Correlation between gene mutation status and molecular subtypes

Stomach Adenocarcinoma (Primary solid tumor)

02 April 2015 | analyses__2015_04_02

Maintainer Information

Citation Information

Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)

Cite as Broad Institute TCGA Genome Data Analysis Center (2015): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1QJ7GDX

Overview

Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 739 genes and 10 molecular subtypes across 289 patients, 2743 significant findings detected with P value < 0.05 and Q value < 0.25.

TP53 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ARID1A mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
RNF43 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
LARP4B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
XYLT2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
B2M mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
BZRAP1 mutation correlated to 'MRNASEQ_CNMF'.
KRAS mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
MLL2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GNG12 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
LMAN1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CDH1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PLEKHA6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
RHOA mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.
SMAD4 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
MTG1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KLF3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
CTCF mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ZBTB20 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GAS6 mutation correlated to 'METHLYATION_CNMF'.
ATP6V1B1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PTEN mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
HLA-A mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FBXW7 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MVK mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FRMD4A mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MBD6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ZBTB7C mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
JARID2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PAX6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PIK3CA mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
APC mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
NLK mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
POLM mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
WBP1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KIAA0182 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SNAPC2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C1QTNF5 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
AOC3 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CIC mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
HLA-B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CD4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ZMYM4 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ZNF43 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
NT5M mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
BCL9L mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TBX4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C7ORF50 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
DDC mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ADAM28 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.
IWS1 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MUC6 mutation correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GXYLT1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
HLA-C mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
PRSS36 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
ZFHX4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
C6ORF89 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SLC16A6 mutation correlated to 'METHLYATION_CNMF'.
PAFAH1B1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
WDR5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
DDX6 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C9ORF131 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ZNF878 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SPG20 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C14ORF43 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FLNB mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GLI1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
WNT16 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
IRF2 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
SPTY2D1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
GPSM3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
STAT2 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PRRG3 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
TP53BP2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
BCOR mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
BCORL1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
RALGAPB mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
BAX mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
ATP2A1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CCDC88A mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
BTBD7 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
ZC3H18 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SLC10A6 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CR2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ARHGAP5 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
RASA1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ZNF48 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
ADAM30 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
SETDB2 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
INPPL1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CTNND1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TFE3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SERPINI1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SOX7 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
LEMD1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ARID1B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PGM5 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FHOD3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CABP5 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TTF1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PHACTR4 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
RBM43 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
CDC25C mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
GPR161 mutation correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
SVIL mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PMEPA1 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.
FILIP1L mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
CTSC mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
PAMR1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
USP21 mutation correlated to 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PAX2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
ZFHX3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
EPHA2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PREPL mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
RGL2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ATP6V1C2 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CDC14A mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
DDX17 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
C19ORF40 mutation correlated to 'MIRSEQ_CNMF'.
ABCC4 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
ZFC3H1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
ZKSCAN5 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
RABGAP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
RNF145 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SNAPC1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.
CCDC153 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
OPTN mutation correlated to 'RPPA_CNMF'.
PLEKHA5 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SREBF2 mutation correlated to 'MIRSEQ_CNMF'.
FASTKD1 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SLC27A3 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
INF2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
C13ORF33 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
AKAP13 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
DYRK4 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
FOXN3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TNFRSF9 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
RHOQ mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
PRPF40B mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
STAT5B mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CFI mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
FERMT2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ALDH3A1 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
GCC2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
NOX5 mutation correlated to 'CN_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KIF13A mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CR1L mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
SCLT1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
STAB1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TP53BP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
IFRD1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SF3B2 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FAM151A mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FHDC1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
TLE2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
HOXD8 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
DDX60 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
BEND3 mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
EIF4G3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MFRP mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
EIF5B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FANCE mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
PALB2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
ISG20L2 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
ITGA6 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
SDAD1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
RTN2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
DNAJC1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
TP53RK mutation correlated to 'RPPA_CNMF'.
CCDC108 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PYGO2 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
C1R mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
FGGY mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
MSH6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
RNF111 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
ABCA6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
WDR7 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ZC3H13 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
IGFBP7 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
HNF1B mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
FAM113B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
RRS1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
WNK4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
RAD51AP2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
PIGB mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
OGDH mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
SERPINB12 mutation correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GATA3 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.
GPR82 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.
ELF3 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
EPHX1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CNBD1 mutation correlated to 'METHLYATION_CNMF'.
SLC26A7 mutation correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
RCOR3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
CASC3 mutation correlated to 'RPPA_CNMF'.
ACVR1B mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
VPS13A mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PLA2G1B mutation correlated to 'MIRSEQ_MATURE_CNMF'.
ZCCHC6 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ITPR2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MLL3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CDK12 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
AKNAD1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ERBB3 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
RSF1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
OSBP2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
EBF3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
LRP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PHKB mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
ABCB6 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
DNAJC18 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.
DLGAP3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KIAA0240 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
ATXN2L mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ZNF608 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KIAA0406 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KIAA1967 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TENC1 mutation correlated to 'MIRSEQ_MATURE_CNMF'.
PLAU mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ALG10 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
CDKL3 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CNMF'.
GLIPR1L2 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
FZD3 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PSME4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GNPNAT1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
ZDHHC7 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
FAM116A mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
C11ORF9 mutation correlated to 'RPPA_CNMF'.
KIAA0195 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TRIP10 mutation correlated to 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FAM193A mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
AXIN2 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C12ORF51 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
UBQLN2 mutation correlated to 'RPPA_CHIERARCHICAL'.
PHACTR2 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
ADNP2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
VPRBP mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PCGF3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
C20ORF160 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
EFHA1 mutation correlated to 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ALPK2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
C16ORF7 mutation correlated to 'MIRSEQ_CNMF'.
HIVEP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
VEZF1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
SBNO1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
WASF3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
RAB14 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
ZNF124 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
RB1CC1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
HIVEP3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
OTX2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CRYGD mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
GPR160 mutation correlated to 'RPPA_CHIERARCHICAL'.
KIN mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SRCIN1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TBC1D22B mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
CDH16 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GLT8D1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
POP1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PIGO mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
NEXN mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
CLDN6 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
MTIF2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
HAUS6 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PLEKHO1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
ASPN mutation correlated to 'MIRSEQ_CNMF'.
HTR1E mutation correlated to 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KLC2 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
BMPR1B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PAPD4 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
KIAA1009 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
C5ORF42 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
YBX2 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SH3KBP1 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.
USP15 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
IGF2BP3 mutation correlated to 'METHLYATION_CNMF'.
PLXNA2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CR1 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
IL2RG mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CNMF'.
FAM70B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
COL12A1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
NFE2L1 mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TCHP mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
UBC mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
XK mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
TMEM41B mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
ENTPD2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
IRS4 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
OR5M3 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
MYEOV mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
C15ORF52 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PKN2 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
IPO11 mutation correlated to 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
INTS12 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
PGBD1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
AQP8 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.
EXO1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PRMT8 mutation correlated to 'RPPA_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ACP1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
RBM6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SLC12A7 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CASP8 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
WHSC1L1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
NEK7 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
BTBD11 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FBXO21 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
NAA25 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
MAMSTR mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
RING1 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
ATM mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
BRWD1 mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PFKP mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
SAFB mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
KCNH4 mutation correlated to 'RPPA_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TMEM63A mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
CTNNA1 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
ZNF626 mutation correlated to 'RPPA_CHIERARCHICAL'.
OPLAH mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
MYOCD mutation correlated to 'CN_CNMF'.
SEC24C mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CEP57 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TMEM55A mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
CASD1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CADPS2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MASTL mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
KBTBD6 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
PLA2G15 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
JHDM1D mutation correlated to 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KCNJ10 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TRUB1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CNMF'.
AGBL5 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
PLAG1 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
HEPACAM2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
CSF3R mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.
RPGR mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
EPB49 mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
LRFN3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GRK4 mutation correlated to 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SERPINB8 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
ERBB4 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
WDR59 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
RUSC2 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
CHST15 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TAF1L mutation correlated to 'MRNASEQ_CNMF'.
USP8 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MYB mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CREM mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
CD93 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
B3GNT5 mutation correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ART1 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
IKBKE mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
TIMM44 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ALDH2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
H2AFY2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.
SOHLH2 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CROT mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GON4L mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
CNKSR2 mutation correlated to 'MIRSEQ_CNMF'.
UHRF1BP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
OR7C1 mutation correlated to 'MRNASEQ_CNMF'.
OLFML3 mutation correlated to 'RPPA_CNMF'.
RINT1 mutation correlated to 'RPPA_CHIERARCHICAL'.
CA2 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
IRS1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FKBP9 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
LMTK3 mutation correlated to 'MRNASEQ_CNMF'.
DNAH5 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GPATCH2 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
KCNH2 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SGOL2 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
ADAMTSL4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CPB2 mutation correlated to 'METHLYATION_CNMF'.
THEMIS mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KRTAP10-9 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
SGK3 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
YIF1A mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
EGR1 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GTF3C4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ACTL6A mutation correlated to 'METHLYATION_CNMF'.
C7ORF49 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
STX2 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CNMF'.
BRSK1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
KIAA1804 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
ZNF711 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
HCRTR2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
C2ORF42 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
KCTD21 mutation correlated to 'MIRSEQ_CNMF'.
SEZ6 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
C7ORF58 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.
STK38 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PTPN4 mutation correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
CTSD mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
EOMES mutation correlated to 'METHLYATION_CNMF'.
AVPR1A mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
OR4K5 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GPR124 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FAAH mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
EYA4 mutation correlated to 'RPPA_CNMF'.
OR2J3 mutation correlated to 'METHLYATION_CNMF'.
MPRIP mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SYNJ2 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KIAA1324L mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GPR141 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
TLR4 mutation correlated to 'METHLYATION_CNMF'.
LIAS mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MAP7D3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ERN2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
FYB mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
NDST2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
TAF7L mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
SAP130 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
SMARCB1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
EPHA5 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
WAPAL mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CEP120 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
RDX mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
SPATA5L1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
TACC2 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CD58 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
KCTD9 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
KIAA1539 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ZFP36L2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TNS4 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
ZBTB49 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CAMTA2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
RERE mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TRAM1L1 mutation correlated to 'METHLYATION_CNMF'.
EXOSC8 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
SUCLG2 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TIGD7 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
ITSN2 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
OGFRL1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KIAA1462 mutation correlated to 'RPPA_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MAP1A mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
NOB1 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.
TNK2 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
CYP7B1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
EDNRB mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
STAU2 mutation correlated to 'RPPA_CHIERARCHICAL'.
ARHGEF17 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
C10ORF120 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
SLC45A4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CSNK1G3 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SLFN12 mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ARFGEF1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
HDLBP mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SYCP2 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TUBE1 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
PTPRJ mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
MDM2 mutation correlated to 'RPPA_CNMF'.
MZF1 mutation correlated to 'CN_CNMF'.
PIGT mutation correlated to 'METHLYATION_CNMF'.
NUPL2 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
NOS3 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
LUC7L3 mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CHRNB3 mutation correlated to 'MIRSEQ_CNMF'.
NARG2 mutation correlated to 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
FLG mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PCBP2 mutation correlated to 'METHLYATION_CNMF'.
PIAS3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
PIWIL2 mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TMEM79 mutation correlated to 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
HIST1H1B mutation correlated to 'METHLYATION_CNMF'.
FGF13 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SCAMP2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
SLC22A16 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
GLYR1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
LRRC43 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
NLRC5 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
EAF2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PHF20 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
UBXN6 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ZNF367 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
NEK8 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ZNF292 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
NT5DC1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
DUSP9 mutation correlated to 'RPPA_CHIERARCHICAL'.
ABCA5 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
GFOD1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ZNF334 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MUT mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.
MGST2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
GPATCH4 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MAP2K1 mutation correlated to 'MRNASEQ_CNMF'.
GANAB mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
YLPM1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PPARGC1B mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TSPYL5 mutation correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
BCKDHA mutation correlated to 'RPPA_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
BRD3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TNKS1BP1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KIRREL2 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
NID2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FOXQ1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
SMAD2 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
LARP1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MIRSEQ_CNMF'.
FAM186B mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
TBC1D23 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
UGP2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
FBN3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
IK mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
FAHD2B mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
GPC4 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CLGN mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
NF1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
LCE1A mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
PRKAR1B mutation correlated to 'MIRSEQ_MATURE_CNMF'.
PPP1R13B mutation correlated to 'RPPA_CHIERARCHICAL'.
DHRS9 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PRICKLE4 mutation correlated to 'MIRSEQ_CNMF'.
TRIM46 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FOXJ1 mutation correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
DCHS1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
HLA-F mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PPL mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PTOV1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
PCCA mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
TAF6 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
ITGA7 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
C11ORF63 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ENOSF1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
SLC38A6 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.
KCNC1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
AMPD3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TRIM27 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
MMP3 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
IDE mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
PLEKHH3 mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
WSB2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
KIAA1609 mutation correlated to 'CN_CNMF'.
AKAP11 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
VASH1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.
SBF1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SCN9A mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KIAA0586 mutation correlated to 'RPPA_CNMF'.
MACF1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
DYRK1A mutation correlated to 'RPPA_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
GALK1 mutation correlated to 'RPPA_CNMF'.
DENND1C mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
CNKSR1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MYCT1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
ATRIP mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ELK3 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MAPK15 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
TM6SF1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
DDX50 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
CCDC27 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.
EPHB6 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
ITGAV mutation correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SAMD9L mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
DUSP11 mutation correlated to 'RPPA_CNMF'.
MRPL2 mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
SLC4A3 mutation correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ZDHHC5 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
GCDH mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
RASA2 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
PIK3R1 mutation correlated to 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CDC5L mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
COL20A1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
NAA16 mutation correlated to 'RPPA_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
NPR3 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.
COX8C mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
ZBTB40 mutation correlated to 'METHLYATION_CNMF'.
TXLNG mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
P2RX1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
CORIN mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
ACSS2 mutation correlated to 'RPPA_CHIERARCHICAL'.
DGKD mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MAGI2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FIGNL1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
USP13 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
CALCRL mutation correlated to 'CN_CNMF'.
DISP2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
MGA mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PPP1R12C mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CNMF'.
UNC50 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.
CNGA4 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
C3 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', and 'MIRSEQ_MATURE_CNMF'.
KANK4 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
ELL2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
KIAA0664 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.
SOS2 mutation correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
ATL3 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PEG3 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SMARCAL1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
THBS1 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PUS7 mutation correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
RALGDS mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CNTROB mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PFAS mutation correlated to 'RPPA_CNMF'.
TCF7 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
GPATCH8 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PSD mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MMEL1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
OSBPL2 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
ROCK1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
LRP12 mutation correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
C19ORF70 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KIAA1217 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
CENPN mutation correlated to 'MRNASEQ_CNMF'.
MAN2B1 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
KIAA0226 mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
ETV1 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
NOL6 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
RNMT mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
HOOK1 mutation correlated to 'MRNASEQ_CNMF'.
CCDC25 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
IQSEC2 mutation correlated to 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
IBTK mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
TDRD3 mutation correlated to 'MIRSEQ_MATURE_CNMF'.
HS6ST2 mutation correlated to 'METHLYATION_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
EPB41L5 mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
ARID5B mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
HECA mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
RHOBTB2 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
EML3 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.
EIF2C4 mutation correlated to 'RPPA_CNMF'.
LSS mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
MMP10 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
SLC7A13 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
FANCA mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CLIP1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
ZNF217 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
SLA mutation correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
HDAC4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
AHI1 mutation correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
CLSTN1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
PPM1H mutation correlated to 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
KYNU mutation correlated to 'RPPA_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
MLL4 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
PHKG2 mutation correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
OR4C16 mutation correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
NUAK1 mutation correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
RASSF5 mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
MTMR11 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

Results

Overview of the results

Table 1. Get Full Table Overview of the association between mutation status of 739 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 2743 significant findings detected.


		Clinical Features	CN CNMF	METHLYATION CNMF	RPPA CNMF	RPPA CHIERARCHICAL	MRNASEQ CNMF	MRNASEQ CHIERARCHICAL	MIRSEQ CNMF	MIRSEQ CHIERARCHICAL	MIRSEQ MATURE CNMF	MIRSEQ MATURE CHIERARCHICAL
	nMutated (%)	nWild-Type	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test
RNF43	49 (17%)	240	1e-05 (0.000739)	1e-05 (0.000739)	0.00238 (0.0222)	0.00049 (0.00834)	1e-05 (0.000739)	1e-05 (0.000739)	1e-05 (0.000739)	1e-05 (0.000739)	0.00312 (0.026)	0.00053 (0.0087)
XYLT2	32 (11%)	257	0.00022 (0.00503)	1e-05 (0.000739)	0.00384 (0.0293)	0.00865 (0.0477)	0.00013 (0.00378)	1e-05 (0.000739)	0.00094 (0.0125)	1e-05 (0.000739)	0.00827 (0.0467)	0.00257 (0.0233)
MLL2	65 (22%)	224	1e-05 (0.000739)	1e-05 (0.000739)	2e-05 (0.00123)	1e-05 (0.000739)	1e-05 (0.000739)	1e-05 (0.000739)	1e-05 (0.000739)	1e-05 (0.000739)	0.0004 (0.00721)	3e-05 (0.00155)
ZBTB20	28 (10%)	261	0.00015 (0.00409)	8e-05 (0.0029)	0.015 (0.065)	0.00865 (0.0477)	2e-05 (0.00123)	1e-05 (0.000739)	1e-05 (0.000739)	1e-05 (0.000739)	0.0064 (0.0393)	0.00278 (0.0245)
ZFHX4	53 (18%)	236	3e-05 (0.00155)	0.00092 (0.0124)	0.0216 (0.0808)	0.0363 (0.11)	1e-05 (0.000739)	1e-05 (0.000739)	3e-05 (0.00155)	6e-05 (0.00238)	0.0233 (0.0853)	0.00082 (0.0116)
PGM5	25 (9%)	264	0.00028 (0.00585)	1e-05 (0.000739)	0.0368 (0.111)	0.00069 (0.0103)	1e-05 (0.000739)	1e-05 (0.000739)	0.00053 (0.0087)	1e-05 (0.000739)	0.00042 (0.00744)	0.00026 (0.00565)
CCDC108	25 (9%)	264	0.00222 (0.0214)	0.00149 (0.0167)	0.00019 (0.00466)	0.00113 (0.014)	1e-05 (0.000739)	9e-05 (0.00308)	6e-05 (0.00238)	1e-05 (0.000739)	0.00343 (0.0274)	0.00041 (0.0073)
MLL3	45 (16%)	244	0.0001 (0.00324)	3e-05 (0.00155)	0.00016 (0.00427)	0.00075 (0.0109)	0.0005 (0.00842)	3e-05 (0.00155)	3e-05 (0.00155)	1e-05 (0.000739)	0.0271 (0.0924)	0.00438 (0.0313)
ADNP2	18 (6%)	271	0.0102 (0.0519)	0.00035 (0.00665)	0.0159 (0.067)	3e-05 (0.00155)	0.0002 (0.00481)	0.00239 (0.0222)	3e-05 (0.00155)	2e-05 (0.00123)	0.0372 (0.112)	0.00979 (0.0507)
ALPK2	19 (7%)	270	0.00032 (0.00632)	0.0493 (0.133)	0.00946 (0.0497)	0.0416 (0.121)	0.0279 (0.094)	0.0122 (0.058)	0.00579 (0.0369)	0.00013 (0.00378)	0.0358 (0.11)	0.0163 (0.0684)
BRD3	16 (6%)	273	0.0166 (0.0691)	0.00998 (0.0512)	0.0202 (0.0776)	0.00251 (0.0229)	1e-05 (0.000739)	0.00213 (0.0208)	0.00018 (0.00454)	0.00551 (0.036)	0.016 (0.0674)	0.0429 (0.122)
ARID1A	90 (31%)	199	1e-05 (0.000739)	1e-05 (0.000739)	0.00032 (0.00632)	4e-05 (0.00184)	1e-05 (0.000739)	1e-05 (0.000739)	1e-05 (0.000739)	4e-05 (0.00184)	0.0678 (0.162)	0.0064 (0.0393)
LARP4B	27 (9%)	262	0.00052 (0.00864)	4e-05 (0.00184)	0.00035 (0.00665)	0.00165 (0.0177)	0.00455 (0.0318)	0.00011 (0.00352)	0.00118 (0.0143)	4e-05 (0.00184)	0.219 (0.339)	0.0189 (0.0743)
B2M	17 (6%)	272	0.0002 (0.00481)	0.00265 (0.0237)	0.0307 (0.1)	0.0255 (0.0898)	0.00056 (0.009)	0.00332 (0.027)	0.0024 (0.0223)	0.00049 (0.00834)	0.3 (0.42)	0.0315 (0.102)
CDH1	29 (10%)	260	0.00016 (0.00427)	0.00012 (0.00366)	0.0378 (0.113)	0.717 (0.784)	0.00383 (0.0293)	0.00012 (0.00366)	0.00189 (0.0193)	0.00024 (0.00537)	0.00791 (0.0455)	0.0109 (0.0539)
ATP6V1B1	20 (7%)	269	0.0033 (0.0269)	0.00032 (0.00632)	0.0551 (0.144)	0.0116 (0.0563)	0.00177 (0.0186)	0.00772 (0.0445)	1e-05 (0.000739)	0.00028 (0.00585)	0.00677 (0.0407)	0.00946 (0.0497)
FBXW7	27 (9%)	262	0.00052 (0.00864)	0.00018 (0.00454)	0.0317 (0.102)	0.0177 (0.0713)	0.0029 (0.0252)	1e-05 (0.000739)	0.0156 (0.0664)	0.00014 (0.00395)	0.0638 (0.156)	0.0383 (0.114)
MBD6	23 (8%)	266	0.00709 (0.042)	0.00486 (0.0332)	0.0246 (0.0882)	0.0117 (0.0566)	0.00302 (0.0256)	0.00077 (0.0112)	0.0268 (0.0922)	4e-05 (0.00184)	0.168 (0.285)	0.00296 (0.0255)
JARID2	28 (10%)	261	2e-05 (0.00123)	0.00026 (0.00565)	0.0144 (0.0636)	0.0001 (0.00324)	1e-05 (0.000739)	1e-05 (0.000739)	0.00044 (0.00767)	2e-05 (0.00123)	0.367 (0.484)	0.00043 (0.00755)
PAX6	18 (6%)	271	0.0399 (0.118)	0.00112 (0.014)	0.186 (0.303)	0.0133 (0.0609)	0.0333 (0.106)	0.00147 (0.0165)	0.00017 (0.00444)	0.0105 (0.0529)	0.0452 (0.126)	0.021 (0.0793)
PIK3CA	57 (20%)	232	1e-05 (0.000739)	1e-05 (0.000739)	0.00222 (0.0214)	0.00243 (0.0224)	4e-05 (0.00184)	1e-05 (0.000739)	0.0179 (0.0719)	0.00053 (0.0087)	0.00014 (0.00395)	0.148 (0.262)
FLNB	24 (8%)	265	0.0003 (0.00609)	4e-05 (0.00184)	0.0125 (0.0588)	0.0313 (0.102)	0.00542 (0.0358)	0.00088 (0.0121)	0.0198 (0.0767)	0.00013 (0.00378)	0.283 (0.402)	0.00072 (0.0107)
BCORL1	20 (7%)	269	0.0004 (0.00721)	0.00174 (0.0184)	3e-05 (0.00155)	0.00012 (0.00366)	2e-05 (0.00123)	0.00051 (0.00855)	0.0001 (0.00324)	3e-05 (0.00155)	0.0612 (0.152)	0.0211 (0.0793)
CCDC88A	20 (7%)	269	0.0198 (0.0766)	0.00087 (0.012)	0.00245 (0.0225)	0.00639 (0.0393)	0.00085 (0.0119)	0.00567 (0.0364)	4e-05 (0.00184)	0.00157 (0.0172)	0.187 (0.304)	0.0297 (0.0979)
INPPL1	22 (8%)	267	0.0021 (0.0207)	0.00369 (0.0288)	0.046 (0.128)	0.00857 (0.0475)	0.00241 (0.0223)	0.00037 (0.00687)	1e-05 (0.000739)	0.0001 (0.00324)	0.114 (0.224)	0.0409 (0.12)
ARID1B	27 (9%)	262	0.00156 (0.0171)	0.00836 (0.047)	0.0275 (0.0932)	0.0327 (0.104)	0.00434 (0.0312)	0.00438 (0.0313)	0.0179 (0.0721)	0.00065 (0.00997)	0.131 (0.241)	0.0378 (0.113)
EPHA2	23 (8%)	266	0.0241 (0.0873)	0.0138 (0.0622)	0.0703 (0.166)	0.0032 (0.0265)	0.00137 (0.0157)	0.00058 (0.00918)	0.00033 (0.00643)	0.0002 (0.00481)	0.00916 (0.0493)	3e-05 (0.00155)
PREPL	22 (8%)	267	0.0356 (0.109)	0.00073 (0.0108)	0.0134 (0.0611)	0.00032 (0.00632)	0.00366 (0.0287)	0.00393 (0.0296)	0.00069 (0.0103)	0.00054 (0.00879)	0.678 (0.752)	0.00593 (0.0376)
DDX17	13 (4%)	276	0.0116 (0.0561)	0.00602 (0.038)	0.0118 (0.0568)	0.0232 (0.0851)	0.0093 (0.0496)	0.00688 (0.041)	0.00798 (0.0458)	0.00022 (0.00503)	0.216 (0.336)	0.0459 (0.127)
PLEKHA5	15 (5%)	274	0.00734 (0.043)	0.00038 (0.00699)	0.0298 (0.0982)	0.0405 (0.119)	0.00051 (0.00855)	0.0226 (0.0833)	0.00028 (0.00585)	5e-05 (0.00208)	0.264 (0.386)	0.00155 (0.0171)
ITPR2	25 (9%)	264	0.0337 (0.106)	0.033 (0.105)	0.00378 (0.0291)	1e-05 (0.000739)	0.00035 (0.00665)	0.017 (0.0699)	0.00038 (0.00699)	0.0007 (0.0104)	0.368 (0.485)	0.0111 (0.0546)
OSBP2	11 (4%)	278	0.0416 (0.121)	0.0346 (0.108)	0.00055 (0.00889)	0.0251 (0.0892)	0.0142 (0.0633)	0.00614 (0.0384)	0.00387 (0.0294)	0.0199 (0.0768)	0.233 (0.352)	0.0475 (0.13)
LRP1	30 (10%)	259	0.00371 (0.0288)	0.00297 (0.0255)	0.00014 (0.00395)	0.00056 (0.009)	0.00122 (0.0147)	0.00018 (0.00454)	0.00081 (0.0115)	0.00057 (0.0091)	0.22 (0.34)	0.0279 (0.0939)
PSME4	35 (12%)	254	0.00014 (0.00395)	1e-05 (0.000739)	0.009 (0.0488)	0.00164 (0.0177)	0.00015 (0.00409)	1e-05 (0.000739)	9e-05 (0.00308)	1e-05 (0.000739)	0.167 (0.285)	0.00303 (0.0257)
KIAA0195	16 (6%)	273	0.0171 (0.0701)	0.00037 (0.00687)	0.00036 (0.00679)	3e-05 (0.00155)	0.00984 (0.0507)	0.00012 (0.00366)	0.00142 (0.0161)	0.00018 (0.00454)	0.0672 (0.161)	1e-05 (0.000739)
KCNJ10	11 (4%)	278	0.0249 (0.0889)	0.0029 (0.0252)	0.00013 (0.00378)	1e-05 (0.000739)	0.00166 (0.0178)	0.00834 (0.0469)	0.00396 (0.0296)	1e-05 (0.000739)	0.48 (0.581)	0.00646 (0.0395)
DNAH5	56 (19%)	233	0.0323 (0.103)	0.00054 (0.00879)	0.00045 (0.00775)	0.145 (0.26)	0.00153 (0.0169)	0.00322 (0.0266)	0.00086 (0.012)	0.00017 (0.00444)	0.0386 (0.115)	0.00557 (0.0361)
MAP7D3	16 (6%)	273	0.0185 (0.0733)	0.026 (0.0909)	0.0313 (0.102)	0.00153 (0.0169)	0.014 (0.0628)	0.00019 (0.00466)	0.0168 (0.0692)	0.00414 (0.0303)	0.313 (0.432)	0.0135 (0.0615)
RERE	21 (7%)	268	0.00103 (0.0133)	8e-05 (0.0029)	0.0318 (0.102)	0.00248 (0.0228)	1e-05 (0.000739)	0.00018 (0.00454)	0.00019 (0.00466)	1e-05 (0.000739)	0.0913 (0.195)	0.00185 (0.0191)
ARFGEF1	24 (8%)	265	0.00287 (0.0251)	0.00045 (0.00775)	0.0005 (0.00842)	1e-05 (0.000739)	1e-05 (0.000739)	1e-05 (0.000739)	2e-05 (0.00123)	1e-05 (0.000739)	0.0616 (0.153)	0.00018 (0.00454)
PTPRJ	24 (8%)	265	0.00066 (0.0101)	0.0108 (0.0538)	0.00068 (0.0103)	0.00229 (0.0217)	5e-05 (0.00208)	0.00267 (0.0238)	1e-05 (0.000739)	0.00037 (0.00687)	0.0151 (0.0653)	0.117 (0.228)
SLC22A16	11 (4%)	278	0.0253 (0.0897)	0.0146 (0.0639)	0.00034 (0.00658)	0.00185 (0.0191)	0.0264 (0.0916)	0.0122 (0.058)	0.0463 (0.128)	0.0195 (0.0758)	0.184 (0.301)	0.0242 (0.0873)
UBXN6	12 (4%)	277	0.0154 (0.0658)	0.00015 (0.00409)	0.397 (0.512)	0.00013 (0.00378)	0.0241 (0.0873)	0.0431 (0.123)	0.00603 (0.038)	9e-05 (0.00308)	0.00463 (0.0321)	0.00828 (0.0467)
FAM186B	10 (3%)	279	0.0406 (0.119)	0.0209 (0.079)	5e-05 (0.00208)	0.00032 (0.00632)	0.0321 (0.103)	0.0254 (0.0898)	0.00815 (0.0463)	1e-05 (0.000739)	0.59 (0.677)	0.0009 (0.0122)
DISP2	15 (5%)	274	0.023 (0.0846)	0.00036 (0.00679)	0.00113 (0.014)	0.0307 (0.1)	0.00443 (0.0315)	0.00824 (0.0467)	0.0015 (0.0167)	0.00217 (0.0211)	0.132 (0.242)	0.0209 (0.079)
HDAC4	22 (8%)	267	0.0006 (0.00937)	1e-05 (0.000739)	8e-05 (0.0029)	3e-05 (0.00155)	8e-05 (0.0029)	1e-05 (0.000739)	0.00086 (0.012)	1e-05 (0.000739)	0.217 (0.337)	0.00026 (0.00565)
LMAN1	22 (8%)	267	0.00233 (0.022)	0.0146 (0.0641)	0.131 (0.242)	0.00612 (0.0384)	0.00037 (0.00687)	1e-05 (0.000739)	0.00013 (0.00378)	0.00053 (0.0087)	0.255 (0.375)	0.00338 (0.0272)
HLA-A	15 (5%)	274	0.0385 (0.115)	0.0187 (0.0736)	0.0709 (0.167)	0.00018 (0.00454)	0.00981 (0.0507)	0.00012 (0.00366)	0.00014 (0.00395)	0.0161 (0.0678)	0.236 (0.355)	0.00134 (0.0155)
KIAA0182	20 (7%)	269	0.00933 (0.0496)	0.0656 (0.159)	0.00417 (0.0303)	1e-05 (0.000739)	0.0603 (0.151)	3e-05 (0.00155)	0.0002 (0.00481)	5e-05 (0.00208)	0.0437 (0.124)	0.0005 (0.00842)
CIC	26 (9%)	263	0.00075 (0.0109)	0.00072 (0.0107)	0.0135 (0.0613)	0.00449 (0.0317)	0.0531 (0.141)	0.00025 (0.00553)	0.0092 (0.0495)	1e-05 (0.000739)	0.371 (0.487)	0.0186 (0.0735)
HLA-B	14 (5%)	275	0.022 (0.0817)	6e-05 (0.00238)	0.00173 (0.0184)	0.00045 (0.00775)	0.00409 (0.0302)	0.00457 (0.0319)	0.00332 (0.027)	0.027 (0.0922)	0.419 (0.533)	0.898 (0.938)
ZNF43	34 (12%)	255	0.00513 (0.0346)	0.00036 (0.00679)	0.193 (0.311)	0.00399 (0.0297)	2e-05 (0.00123)	0.00197 (0.0198)	1e-05 (0.000739)	3e-05 (0.00155)	0.00021 (0.00496)	0.0745 (0.172)
C7ORF50	10 (3%)	279	0.124 (0.235)	0.00119 (0.0144)	0.0103 (0.0522)	0.00118 (0.0143)	0.00634 (0.0392)	0.0153 (0.0657)	0.0114 (0.0555)	0.00157 (0.0172)	0.706 (0.775)	0.0449 (0.125)
PAFAH1B1	12 (4%)	277	0.0249 (0.0889)	0.0141 (0.0632)	0.00709 (0.042)	0.00069 (0.0103)	0.0345 (0.107)	0.0496 (0.134)	0.0267 (0.0921)	0.0164 (0.0687)	0.813 (0.865)	0.113 (0.222)
C14ORF43	20 (7%)	269	0.00041 (0.0073)	0.00017 (0.00444)	0.00936 (0.0496)	4e-05 (0.00184)	0.0592 (0.149)	0.00752 (0.0437)	0.00067 (0.0102)	0.00016 (0.00427)	0.547 (0.642)	0.0127 (0.0595)
WNT16	13 (4%)	276	0.00761 (0.0441)	0.0127 (0.0594)	0.108 (0.216)	0.00265 (0.0237)	0.00029 (0.00597)	1e-05 (0.000739)	0.00148 (0.0166)	0.00269 (0.024)	0.549 (0.644)	0.0242 (0.0873)
BTBD7	18 (6%)	271	0.0104 (0.0527)	0.00235 (0.0221)	0.00019 (0.00466)	0.00047 (0.00804)	0.0637 (0.156)	0.0015 (0.0167)	0.00028 (0.00585)	0.00028 (0.00585)	0.0355 (0.109)	0.0922 (0.196)
ZFHX3	38 (13%)	251	0.00183 (0.019)	7e-05 (0.00267)	5e-05 (0.00208)	0.00118 (0.0143)	0.00015 (0.00409)	1e-05 (0.000739)	6e-05 (0.00238)	1e-05 (0.000739)	0.129 (0.24)	0.0576 (0.147)
CDC14A	15 (5%)	274	0.0122 (0.058)	0.00545 (0.0359)	0.00807 (0.0461)	0.00177 (0.0186)	0.0395 (0.117)	0.00637 (0.0393)	1e-05 (0.000739)	8e-05 (0.0029)	0.197 (0.314)	0.051 (0.137)
RABGAP1	20 (7%)	269	0.00159 (0.0174)	1e-05 (0.000739)	0.0632 (0.155)	0.00535 (0.0357)	1e-05 (0.000739)	1e-05 (0.000739)	0.00022 (0.00503)	1e-05 (0.000739)	0.19 (0.308)	0.00605 (0.0381)
GCC2	10 (3%)	279	0.0239 (0.0869)	0.0436 (0.124)	0.0417 (0.121)	0.00296 (0.0255)	0.00018 (0.00454)	0.00367 (0.0287)	0.00818 (0.0464)	0.00341 (0.0274)	0.893 (0.934)	0.377 (0.493)
STAB1	28 (10%)	261	0.00013 (0.00378)	2e-05 (0.00123)	0.00088 (0.0121)	1e-05 (0.000739)	9e-05 (0.00308)	1e-05 (0.000739)	0.00054 (0.00879)	2e-05 (0.00123)	0.552 (0.647)	0.655 (0.732)
TLE2	19 (7%)	270	0.00714 (0.0422)	0.00013 (0.00378)	0.0236 (0.0862)	0.00641 (0.0393)	8e-05 (0.0029)	0.00015 (0.00409)	0.104 (0.211)	2e-05 (0.00123)	0.319 (0.437)	0.00872 (0.0478)
MFRP	11 (4%)	278	0.143 (0.257)	0.0012 (0.0144)	0.00402 (0.0299)	0.0269 (0.0922)	0.0247 (0.0882)	0.00837 (0.047)	0.0337 (0.106)	0.00371 (0.0288)	0.231 (0.35)	0.0374 (0.112)
EIF5B	18 (6%)	271	0.00594 (0.0376)	0.0129 (0.0599)	0.00033 (0.00643)	4e-05 (0.00184)	0.00645 (0.0395)	0.00383 (0.0293)	0.00028 (0.00585)	0.00074 (0.0109)	0.206 (0.324)	0.1 (0.207)
ZC3H13	29 (10%)	260	0.00059 (0.00928)	4e-05 (0.00184)	1e-05 (0.000739)	2e-05 (0.00123)	0.00145 (0.0163)	0.00016 (0.00427)	2e-05 (0.00123)	2e-05 (0.00123)	0.178 (0.295)	0.156 (0.271)
FAM113B	13 (4%)	276	0.0233 (0.0854)	0.00707 (0.042)	0.00094 (0.0125)	0.0302 (0.0991)	0.00176 (0.0186)	4e-05 (0.00184)	0.00813 (0.0463)	0.00745 (0.0434)	0.269 (0.389)	0.11 (0.219)
HIVEP1	22 (8%)	267	0.0316 (0.102)	0.00305 (0.0258)	0.0524 (0.139)	0.0299 (0.0983)	0.00035 (0.00665)	0.00607 (0.0381)	0.0192 (0.0749)	0.00029 (0.00597)	0.129 (0.24)	0.00939 (0.0497)
C5ORF42	26 (9%)	263	0.0799 (0.178)	0.00077 (0.0112)	0.0216 (0.0808)	1e-05 (0.000739)	0.00068 (0.0103)	0.0119 (0.057)	0.00916 (0.0493)	0.0042 (0.0305)	0.29 (0.41)	0.0105 (0.053)
RBM6	20 (7%)	269	0.0325 (0.104)	0.00292 (0.0254)	0.0242 (0.0873)	0.00043 (0.00755)	0.00028 (0.00585)	0.00115 (0.0142)	0.0007 (0.0104)	3e-05 (0.00155)	0.0767 (0.175)	0.0571 (0.146)
SLC12A7	18 (6%)	271	0.0327 (0.104)	0.0027 (0.024)	0.0573 (0.147)	0.0436 (0.124)	0.00075 (0.0109)	0.0664 (0.16)	0.00225 (0.0215)	0.00115 (0.0142)	0.0282 (0.0945)	0.00015 (0.00409)
UHRF1BP1	15 (5%)	274	0.00105 (0.0134)	0.0065 (0.0396)	0.0612 (0.152)	0.00288 (0.0251)	0.00245 (0.0225)	0.0422 (0.121)	0.0129 (0.06)	0.00187 (0.0192)	0.00145 (0.0163)	0.421 (0.534)
ADAMTSL4	15 (5%)	274	0.0207 (0.0785)	0.00856 (0.0475)	0.00124 (0.0149)	0.00633 (0.0392)	0.0444 (0.125)	0.0254 (0.0898)	0.00033 (0.00643)	0.00211 (0.0207)	0.573 (0.663)	0.185 (0.301)
GPR124	13 (4%)	276	0.224 (0.343)	0.0308 (0.1)	0.0194 (0.0755)	0.00075 (0.0109)	0.00662 (0.04)	0.00396 (0.0296)	0.0008 (0.0114)	0.00093 (0.0124)	0.0814 (0.181)	0.0472 (0.13)
KIAA1324L	21 (7%)	268	0.425 (0.536)	0.00038 (0.00699)	0.0103 (0.0521)	0.00336 (0.0272)	0.0182 (0.0726)	0.00043 (0.00755)	0.0283 (0.0946)	7e-05 (0.00267)	0.16 (0.276)	0.00114 (0.0141)
CAMTA2	16 (6%)	273	0.001 (0.013)	0.00059 (0.00928)	0.0121 (0.0576)	0.0184 (0.0731)	0.0218 (0.081)	0.106 (0.214)	0.00864 (0.0477)	0.031 (0.101)	0.00161 (0.0175)	0.129 (0.24)
MAP1A	15 (5%)	274	0.389 (0.504)	0.0384 (0.115)	0.00081 (0.0115)	0.00557 (0.0361)	0.00327 (0.0268)	0.0225 (0.0831)	0.003 (0.0255)	0.00613 (0.0384)	0.224 (0.343)	0.0413 (0.12)
SYCP2	17 (6%)	272	0.0422 (0.121)	0.0771 (0.175)	0.00012 (0.00366)	0.00996 (0.0511)	0.0165 (0.0688)	0.00666 (0.0402)	0.00061 (0.00947)	0.00041 (0.0073)	0.19 (0.308)	0.0134 (0.0613)
ZNF292	21 (7%)	268	0.00088 (0.0121)	0.00847 (0.0473)	0.00204 (0.0202)	1e-05 (0.000739)	1e-05 (0.000739)	0.0005 (0.00842)	9e-05 (0.00308)	0.00024 (0.00537)	0.193 (0.31)	0.13 (0.24)
DCHS1	29 (10%)	260	0.298 (0.417)	0.00117 (0.0143)	0.00215 (0.021)	0.0066 (0.04)	0.03 (0.0984)	0.0134 (0.0612)	0.0254 (0.0898)	5e-05 (0.00208)	0.335 (0.452)	0.00202 (0.0201)
PPL	16 (6%)	273	0.23 (0.349)	0.0585 (0.149)	0.0161 (0.0676)	0.00061 (0.00947)	0.00042 (0.00744)	0.0387 (0.115)	5e-05 (0.00208)	9e-05 (0.00308)	0.0325 (0.104)	0.021 (0.0793)
ITGA7	14 (5%)	275	0.00419 (0.0304)	0.00842 (0.0472)	0.00028 (0.00585)	0.367 (0.485)	0.00094 (0.0125)	0.00022 (0.00503)	0.0266 (0.0918)	0.00209 (0.0206)	0.0692 (0.164)	0.0416 (0.121)
MGA	25 (9%)	264	0.0011 (0.0138)	0.00012 (0.00366)	0.00183 (0.019)	0.00026 (0.00565)	1e-05 (0.000739)	0.0001 (0.00324)	4e-05 (0.00184)	1e-05 (0.000739)	0.164 (0.282)	0.0563 (0.146)
PEG3	31 (11%)	258	0.183 (0.3)	0.00144 (0.0163)	0.0204 (0.0779)	0.00015 (0.00409)	0.00603 (0.038)	0.00503 (0.0341)	0.0176 (0.0712)	0.00262 (0.0236)	0.131 (0.241)	0.00223 (0.0214)
GPATCH8	23 (8%)	266	0.00184 (0.0191)	0.237 (0.357)	0.0202 (0.0775)	0.0193 (0.0753)	0.00484 (0.0331)	0.00804 (0.046)	0.0107 (0.0534)	0.00936 (0.0496)	0.153 (0.267)	0.0422 (0.121)
IBTK	18 (6%)	271	0.0063 (0.0391)	0.0198 (0.0766)	0.0147 (0.0643)	0.0065 (0.0396)	0.0286 (0.0951)	0.00632 (0.0391)	0.0435 (0.124)	0.00204 (0.0202)	0.364 (0.481)	0.716 (0.784)
MLL4	23 (8%)	266	0.0241 (0.0873)	7e-05 (0.00267)	0.431 (0.542)	0.0402 (0.118)	0.00491 (0.0335)	9e-05 (0.00308)	0.003 (0.0255)	0.00095 (0.0126)	0.467 (0.57)	0.0237 (0.0865)
TP53	137 (47%)	152	1e-05 (0.000739)	1e-05 (0.000739)	0.458 (0.562)	0.403 (0.517)	1e-05 (0.000739)	1e-05 (0.000739)	1e-05 (0.000739)	1e-05 (0.000739)	0.0787 (0.177)	0.00103 (0.0133)
PLEKHA6	20 (7%)	269	0.00943 (0.0497)	0.0316 (0.102)	0.00211 (0.0207)	0.205 (0.324)	0.0619 (0.153)	0.0271 (0.0924)	0.0031 (0.0259)	0.0238 (0.0868)	0.213 (0.332)	0.0209 (0.079)
KLF3	19 (7%)	270	0.0211 (0.0793)	0.00058 (0.00918)	0.00022 (0.00503)	0.0243 (0.0875)	0.0466 (0.129)	0.00052 (0.00864)	0.254 (0.374)	0.00717 (0.0423)	0.409 (0.522)	0.281 (0.401)
PTEN	23 (8%)	266	0.0007 (0.0104)	0.00158 (0.0173)	0.0168 (0.0692)	0.162 (0.28)	0.0001 (0.00324)	0.0313 (0.101)	0.0143 (0.0634)	0.00296 (0.0255)	0.0597 (0.15)	0.12 (0.23)
APC	42 (15%)	247	0.25 (0.37)	0.166 (0.283)	0.022 (0.0816)	0.00016 (0.00427)	0.0134 (0.0612)	0.00236 (0.0221)	9e-05 (0.00308)	0.00127 (0.0151)	0.0852 (0.186)	0.0189 (0.0741)
NLK	12 (4%)	277	0.102 (0.209)	0.0183 (0.0728)	0.00128 (0.0152)	0.00406 (0.03)	0.0245 (0.0879)	0.134 (0.245)	0.00195 (0.0197)	0.0167 (0.0692)	0.271 (0.391)	0.00861 (0.0476)
SNAPC2	11 (4%)	278	0.141 (0.254)	0.0126 (0.0591)	0.0421 (0.121)	0.00011 (0.00352)	0.01 (0.0514)	0.00595 (0.0376)	0.0055 (0.036)	0.00308 (0.0259)	0.322 (0.44)	0.457 (0.561)
C1QTNF5	8 (3%)	281	0.0356 (0.109)	0.0481 (0.131)	0.00112 (0.014)	0.00023 (0.00523)	0.0251 (0.0893)	0.00204 (0.0202)	0.0618 (0.153)	0.0189 (0.0742)	0.588 (0.675)	0.13 (0.24)
BCL9L	24 (8%)	265	0.0601 (0.151)	0.00944 (0.0497)	0.0047 (0.0324)	0.00039 (0.00713)	0.00412 (0.0303)	1e-05 (0.000739)	0.00074 (0.0109)	0.00014 (0.00395)	0.485 (0.586)	0.0502 (0.135)
DDX6	15 (5%)	274	0.00304 (0.0257)	0.155 (0.27)	0.0499 (0.134)	0.0459 (0.128)	0.0339 (0.107)	0.0425 (0.122)	0.00832 (0.0469)	0.0025 (0.0229)	0.282 (0.402)	1 (1.00)
ZNF878	12 (4%)	277	0.0258 (0.0906)	6e-05 (0.00238)	0.0955 (0.2)	0.00023 (0.00523)	0.00067 (0.0102)	0.0139 (0.0627)	0.00247 (0.0227)	4e-05 (0.00184)	0.484 (0.585)	0.368 (0.485)
TP53BP2	14 (5%)	275	0.228 (0.347)	0.0188 (0.074)	0.00394 (0.0296)	0.00739 (0.0432)	0.00652 (0.0397)	0.0261 (0.091)	0.0004 (0.00721)	0.00582 (0.0371)	0.461 (0.565)	0.115 (0.225)
BCOR	21 (7%)	268	0.00022 (0.00503)	5e-05 (0.00208)	0.137 (0.249)	0.00276 (0.0244)	0.00551 (0.036)	0.00024 (0.00537)	0.00165 (0.0177)	0.0267 (0.0921)	0.663 (0.739)	0.149 (0.264)
ATP2A1	15 (5%)	274	0.00375 (0.029)	0.00057 (0.0091)	0.182 (0.298)	0.178 (0.295)	0.00078 (0.0112)	0.00771 (0.0445)	0.00138 (0.0158)	0.0001 (0.00324)	0.111 (0.22)	4e-05 (0.00184)
ZC3H18	18 (6%)	271	0.128 (0.239)	0.0208 (0.0788)	0.0139 (0.0627)	0.163 (0.28)	0.00516 (0.0348)	0.00414 (0.0303)	0.0137 (0.0621)	0.0141 (0.0632)	0.129 (0.24)	0.00608 (0.0381)
CR2	20 (7%)	269	0.0936 (0.198)	0.0926 (0.196)	0.00742 (0.0433)	0.00346 (0.0275)	0.00164 (0.0177)	0.0316 (0.102)	0.00024 (0.00537)	0.00853 (0.0475)	0.147 (0.261)	0.00938 (0.0497)
SOX7	15 (5%)	274	0.0118 (0.0568)	0.013 (0.0603)	0.273 (0.394)	0.00296 (0.0255)	0.0205 (0.0782)	0.156 (0.271)	2e-05 (0.00123)	0.00139 (0.0159)	0.0152 (0.0654)	0.184 (0.301)
TTF1	14 (5%)	275	0.621 (0.703)	0.0352 (0.109)	0.00481 (0.033)	0.0132 (0.0609)	0.0128 (0.0598)	0.589 (0.676)	0.00391 (0.0296)	0.00363 (0.0285)	0.143 (0.258)	0.0242 (0.0873)
SVIL	26 (9%)	263	0.00164 (0.0177)	0.00013 (0.00378)	0.212 (0.331)	0.113 (0.223)	0.00073 (0.0108)	0.00336 (0.0272)	0.00871 (0.0478)	0.00416 (0.0303)	0.252 (0.372)	0.0386 (0.115)
AKAP13	28 (10%)	261	0.457 (0.562)	0.00394 (0.0296)	0.0614 (0.153)	0.0145 (0.0638)	0.178 (0.295)	0.00254 (0.0231)	2e-05 (0.00123)	0.00132 (0.0154)	0.0221 (0.0819)	0.00837 (0.047)
FERMT2	7 (2%)	282	0.252 (0.372)	0.0135 (0.0613)	0.00085 (0.0119)	0.00488 (0.0333)	0.0987 (0.205)	0.00031 (0.00624)	0.436 (0.545)	0.0352 (0.109)	0.0221 (0.0819)	0.00477 (0.0328)
SCLT1	16 (6%)	273	0.178 (0.295)	0.0898 (0.193)	0.00242 (0.0224)	0.0275 (0.0932)	0.0308 (0.1)	0.034 (0.107)	0.00569 (0.0365)	0.00087 (0.012)	0.0865 (0.188)	0.0442 (0.124)
EIF4G3	15 (5%)	274	0.155 (0.27)	0.00639 (0.0393)	5e-05 (0.00208)	0.105 (0.213)	0.0004 (0.00721)	0.0154 (0.0658)	0.0128 (0.0598)	0.00547 (0.0359)	0.426 (0.537)	0.0234 (0.0855)
WDR7	17 (6%)	272	0.00028 (0.00585)	0.0165 (0.0689)	0.323 (0.442)	0.0206 (0.0783)	0.0205 (0.0781)	0.00441 (0.0315)	0.00672 (0.0405)	0.00631 (0.0391)	0.117 (0.227)	0.216 (0.336)
ELF3	11 (4%)	278	0.0417 (0.121)	0.16 (0.276)	0.073 (0.17)	0.0251 (0.0893)	0.00777 (0.0448)	0.011 (0.0543)	0.00027 (0.00583)	0.00098 (0.0129)	0.021 (0.0793)	0.247 (0.367)
EPHX1	9 (3%)	280	0.0554 (0.144)	0.0513 (0.137)	0.00991 (0.051)	0.0235 (0.0857)	0.0112 (0.055)	0.244 (0.364)	0.00185 (0.0191)	0.00025 (0.00553)	0.0394 (0.117)	0.0172 (0.0703)
RCOR3	12 (4%)	277	0.0291 (0.0962)	0.00115 (0.0142)	0.00118 (0.0143)	0.00662 (0.04)	0.00202 (0.0201)	0.0484 (0.132)	0.259 (0.38)	0.00558 (0.0361)	0.65 (0.728)	0.603 (0.688)
VPS13A	32 (11%)	257	0.0243 (0.0874)	0.0957 (0.201)	0.00284 (0.0249)	0.00013 (0.00378)	0.00314 (0.0261)	0.00069 (0.0103)	0.0096 (0.0501)	0.00924 (0.0496)	0.0707 (0.166)	0.345 (0.463)
ATXN2L	17 (6%)	272	0.0166 (0.069)	0.00251 (0.0229)	0.0953 (0.2)	0.00107 (0.0135)	0.00558 (0.0361)	0.00017 (0.00444)	0.00513 (0.0346)	0.00025 (0.00553)	0.353 (0.47)	0.223 (0.342)
ZNF608	15 (5%)	274	0.00191 (0.0195)	0.00091 (0.0123)	0.00446 (0.0315)	0.00298 (0.0255)	0.00984 (0.0507)	0.153 (0.267)	0.0112 (0.0551)	3e-05 (0.00155)	0.382 (0.498)	0.128 (0.24)
KIAA1967	17 (6%)	272	5e-05 (0.00208)	0.00017 (0.00444)	0.0694 (0.165)	0.00018 (0.00454)	4e-05 (0.00184)	1e-05 (0.000739)	0.00372 (0.0288)	1e-05 (0.000739)	0.562 (0.655)	0.185 (0.303)
C12ORF51	30 (10%)	259	0.00024 (0.00537)	7e-05 (0.00267)	0.0483 (0.132)	0.00104 (0.0133)	0.0303 (0.0992)	0.00461 (0.032)	0.0332 (0.105)	0.0548 (0.143)	0.332 (0.449)	0.694 (0.767)
SBNO1	17 (6%)	272	0.12 (0.231)	0.00887 (0.0483)	0.0483 (0.132)	0.00932 (0.0496)	0.0137 (0.062)	0.00563 (0.0362)	0.0253 (0.0897)	0.00167 (0.0179)	0.239 (0.359)	0.0645 (0.157)
CDH16	13 (4%)	276	0.0153 (0.0655)	0.0766 (0.175)	0.00464 (0.0321)	0.04 (0.118)	0.0344 (0.107)	0.0255 (0.0898)	0.0149 (0.0646)	0.00446 (0.0315)	0.459 (0.563)	0.123 (0.234)
POP1	19 (7%)	270	0.663 (0.739)	0.204 (0.322)	0.0495 (0.134)	0.00832 (0.0469)	0.00661 (0.04)	0.00202 (0.0201)	0.00106 (0.0134)	0.00113 (0.014)	0.365 (0.483)	0.0454 (0.126)
PLXNA2	23 (8%)	266	0.145 (0.26)	0.0868 (0.188)	4e-05 (0.00184)	1e-05 (0.000739)	0.00096 (0.0127)	0.00486 (0.0332)	0.00037 (0.00687)	3e-05 (0.00155)	0.166 (0.284)	0.0115 (0.0558)
CR1	25 (9%)	264	0.00456 (0.0318)	0.0557 (0.145)	0.0269 (0.0922)	0.0566 (0.146)	2e-05 (0.00123)	2e-05 (0.00123)	1e-05 (0.000739)	0.00131 (0.0153)	0.0279 (0.0939)	0.519 (0.616)
FAM70B	13 (4%)	276	0.0451 (0.126)	0.002 (0.02)	0.434 (0.544)	0.0774 (0.176)	0.0458 (0.127)	0.00946 (0.0497)	0.0155 (0.0661)	0.00018 (0.00454)	0.298 (0.417)	0.0366 (0.111)
EXO1	16 (6%)	273	0.0168 (0.0692)	8e-05 (0.0029)	0.0259 (0.0906)	1e-05 (0.000739)	0.0813 (0.18)	0.00221 (0.0214)	0.00817 (0.0464)	1e-05 (0.000739)	0.675 (0.749)	0.385 (0.501)
IRS1	20 (7%)	269	0.0196 (0.076)	0.0385 (0.115)	0.0103 (0.0519)	0.0578 (0.147)	0.00331 (0.027)	0.00211 (0.0207)	0.0132 (0.0608)	0.00275 (0.0243)	0.199 (0.317)	0.205 (0.324)
MPRIP	14 (5%)	275	0.0477 (0.131)	0.00483 (0.0331)	0.00912 (0.0493)	0.0213 (0.08)	0.434 (0.544)	0.289 (0.409)	0.0131 (0.0606)	0.00054 (0.00879)	0.68 (0.754)	0.0448 (0.125)
SAP130	11 (4%)	278	0.0643 (0.157)	0.00306 (0.0258)	0.6 (0.686)	0.00117 (0.0143)	0.00224 (0.0214)	0.0167 (0.0692)	0.00395 (0.0296)	0.004 (0.0297)	0.0475 (0.13)	0.0902 (0.194)
GLYR1	13 (4%)	276	0.0947 (0.199)	0.0187 (0.0736)	0.0004 (0.00721)	0.00463 (0.0321)	0.224 (0.343)	0.00979 (0.0507)	0.0389 (0.116)	0.0306 (0.0999)	0.0382 (0.114)	0.245 (0.365)
NLRC5	19 (7%)	270	0.00029 (0.00597)	0.00236 (0.0221)	0.0708 (0.166)	0.0594 (0.15)	0.00019 (0.00466)	3e-05 (0.00155)	0.00641 (0.0393)	0.00031 (0.00624)	0.00967 (0.0502)	0.245 (0.365)
YLPM1	18 (6%)	271	0.0095 (0.0497)	0.00888 (0.0484)	0.0495 (0.134)	0.00673 (0.0405)	0.0816 (0.181)	0.00298 (0.0255)	0.00261 (0.0236)	0.00382 (0.0293)	0.142 (0.257)	0.0824 (0.182)
TNKS1BP1	19 (7%)	270	0.0105 (0.053)	0.0251 (0.0893)	0.00013 (0.00378)	0.0565 (0.146)	0.00441 (0.0315)	0.0216 (0.0806)	0.00656 (0.0399)	0.102 (0.209)	0.455 (0.56)	0.0416 (0.121)
FBN3	28 (10%)	261	0.0318 (0.102)	0.0148 (0.0644)	0.056 (0.145)	0.00156 (0.0171)	0.00046 (0.00789)	1e-05 (0.000739)	0.00058 (0.00918)	3e-05 (0.00155)	0.145 (0.26)	0.271 (0.391)
AMPD3	19 (7%)	270	0.018 (0.0722)	0.0002 (0.00481)	0.00187 (0.0192)	0.0122 (0.058)	0.0721 (0.169)	0.0256 (0.0901)	0.00191 (0.0195)	0.0107 (0.0535)	0.315 (0.433)	0.318 (0.436)
MACF1	45 (16%)	244	0.137 (0.249)	0.00153 (0.0169)	0.0119 (0.0573)	0.103 (0.21)	0.0126 (0.0593)	0.00021 (0.00496)	0.00358 (0.0283)	0.00035 (0.00665)	0.0647 (0.157)	0.00153 (0.0169)
DDX50	11 (4%)	278	0.0842 (0.185)	0.0141 (0.0632)	0.324 (0.442)	0.0342 (0.107)	0.00872 (0.0478)	0.0208 (0.079)	0.0468 (0.129)	0.0151 (0.0653)	0.0762 (0.174)	0.0209 (0.079)
HECA	12 (4%)	277	0.00599 (0.0379)	0.11 (0.219)	0.0171 (0.07)	0.0342 (0.107)	0.00022 (0.00503)	0.0279 (0.094)	0.00012 (0.00366)	0.00318 (0.0263)	0.586 (0.673)	0.268 (0.388)
GNG12	11 (4%)	278	0.079 (0.177)	0.117 (0.227)	0.0418 (0.121)	0.0357 (0.109)	0.00227 (0.0216)	0.0344 (0.107)	0.00385 (0.0293)	0.0009 (0.0122)	0.586 (0.674)	0.128 (0.24)
CTCF	18 (6%)	271	0.00087 (0.012)	0.018 (0.0721)	0.11 (0.219)	0.197 (0.315)	0.00416 (0.0303)	0.00078 (0.0112)	0.00338 (0.0272)	0.0318 (0.102)	0.144 (0.258)	0.255 (0.375)
FRMD4A	18 (6%)	271	0.05 (0.135)	2e-05 (0.00123)	0.00436 (0.0313)	0.0746 (0.172)	0.00544 (0.0359)	0.00396 (0.0296)	0.0116 (0.0563)	0.00045 (0.00775)	0.334 (0.451)	0.0553 (0.144)
ZMYM4	17 (6%)	272	0.118 (0.229)	0.0355 (0.109)	0.00325 (0.0267)	0.132 (0.243)	0.0324 (0.104)	0.00381 (0.0292)	0.0248 (0.0885)	0.0375 (0.112)	0.391 (0.506)	0.474 (0.575)
TBX4	11 (4%)	278	0.041 (0.12)	0.0147 (0.0643)	0.179 (0.296)	0.401 (0.515)	0.0374 (0.112)	0.0166 (0.0691)	0.0348 (0.108)	0.003 (0.0255)	0.585 (0.673)	0.224 (0.343)
GXYLT1	12 (4%)	277	0.056 (0.145)	0.0192 (0.0749)	0.00015 (0.00409)	0.00679 (0.0408)	0.00931 (0.0496)	0.00697 (0.0415)	0.0176 (0.0713)	0.0636 (0.156)	0.221 (0.341)	0.424 (0.535)
C6ORF89	9 (3%)	280	0.452 (0.558)	0.0191 (0.0746)	0.0258 (0.0905)	0.107 (0.215)	0.0202 (0.0776)	0.00779 (0.0448)	0.144 (0.258)	0.0277 (0.0938)	0.0674 (0.161)	0.00868 (0.0478)
SPG20	21 (7%)	268	0.0108 (0.0536)	0.00496 (0.0338)	0.078 (0.176)	0.0807 (0.179)	0.00156 (0.0171)	0.00179 (0.0188)	0.0101 (0.0515)	9e-05 (0.00308)	0.302 (0.421)	0.0573 (0.147)
GPSM3	12 (4%)	277	0.142 (0.256)	0.04 (0.118)	0.00173 (0.0184)	0.259 (0.38)	0.234 (0.353)	0.0283 (0.0946)	0.0268 (0.0922)	0.035 (0.108)	0.0295 (0.0974)	0.0589 (0.149)
RASA1	17 (6%)	272	0.329 (0.447)	0.0906 (0.194)	0.00859 (0.0476)	0.0241 (0.0873)	0.00029 (0.00597)	0.0113 (0.0551)	0.00039 (0.00713)	0.0418 (0.121)	0.639 (0.717)	0.426 (0.537)
CTNND1	19 (7%)	270	3e-05 (0.00155)	0.00014 (0.00395)	0.138 (0.251)	0.2 (0.319)	0.00185 (0.0191)	0.0351 (0.109)	0.0242 (0.0873)	0.00059 (0.00928)	0.222 (0.342)	0.174 (0.291)
FHOD3	26 (9%)	263	0.0426 (0.122)	0.0001 (0.00324)	0.00844 (0.0473)	0.228 (0.347)	0.349 (0.467)	0.0806 (0.179)	0.00221 (0.0214)	0.00015 (0.00409)	0.0972 (0.203)	0.0217 (0.0808)
FILIP1L	17 (6%)	272	0.13 (0.24)	0.0247 (0.0882)	3e-05 (0.00155)	1e-05 (0.000739)	0.0114 (0.0556)	0.0008 (0.0114)	0.0251 (0.0893)	0.0742 (0.172)	0.548 (0.643)	0.103 (0.21)
KIF13A	20 (7%)	269	0.296 (0.416)	0.062 (0.153)	0.0165 (0.0689)	0.0225 (0.0829)	0.00021 (0.00496)	0.0101 (0.0515)	0.00326 (0.0268)	0.002 (0.02)	0.621 (0.703)	0.222 (0.342)
FAM151A	9 (3%)	280	0.0404 (0.119)	0.0525 (0.139)	0.602 (0.687)	0.179 (0.295)	0.0319 (0.102)	0.049 (0.133)	0.014 (0.063)	0.0493 (0.133)	0.424 (0.535)	0.0392 (0.116)
FHDC1	15 (5%)	274	0.00295 (0.0255)	0.0133 (0.061)	0.0306 (0.1)	0.361 (0.479)	0.0285 (0.095)	0.00467 (0.0323)	0.0176 (0.0711)	0.288 (0.408)	0.0538 (0.142)	0.13 (0.24)
PYGO2	7 (2%)	282	0.25 (0.37)	0.00948 (0.0497)	0.311 (0.43)	0.0531 (0.14)	0.00414 (0.0303)	0.0179 (0.0721)	0.00969 (0.0503)	0.00674 (0.0405)	0.136 (0.248)	0.00094 (0.0125)
MSH6	19 (7%)	270	0.0146 (0.0641)	0.0228 (0.084)	0.00742 (0.0433)	0.00872 (0.0478)	0.194 (0.312)	9e-05 (0.00308)	0.201 (0.32)	0.0467 (0.129)	0.282 (0.402)	0.148 (0.262)
WNK4	21 (7%)	268	0.0134 (0.0612)	0.022 (0.0816)	0.00389 (0.0295)	0.0507 (0.136)	0.0831 (0.183)	0.00359 (0.0283)	0.0285 (0.095)	0.0483 (0.132)	0.19 (0.308)	0.204 (0.322)
PIGB	10 (3%)	279	0.139 (0.252)	0.048 (0.131)	0.0426 (0.122)	0.0225 (0.0829)	0.0344 (0.107)	0.122 (0.232)	0.0108 (0.0535)	0.0452 (0.126)	0.517 (0.614)	1 (1.00)
ZCCHC6	13 (4%)	276	0.0159 (0.0672)	0.232 (0.35)	0.0056 (0.0362)	0.0408 (0.119)	0.0347 (0.108)	0.101 (0.208)	6e-05 (0.00238)	0.00118 (0.0143)	0.171 (0.288)	0.128 (0.24)
AKNAD1	18 (6%)	271	0.165 (0.283)	0.0602 (0.151)	0.0259 (0.0907)	0.0141 (0.0632)	0.00849 (0.0473)	0.0112 (0.0551)	0.0357 (0.109)	0.0306 (0.0999)	0.123 (0.233)	0.0843 (0.185)
RSF1	17 (6%)	272	0.353 (0.471)	0.0936 (0.198)	0.0359 (0.11)	0.00307 (0.0258)	0.0342 (0.107)	0.0251 (0.0893)	0.0243 (0.0874)	0.013 (0.0605)	0.192 (0.31)	0.0534 (0.141)
EBF3	12 (4%)	277	0.33 (0.448)	0.00254 (0.0231)	0.0983 (0.204)	0.00407 (0.0301)	0.00857 (0.0475)	0.033 (0.105)	0.0443 (0.124)	0.00056 (0.009)	0.599 (0.685)	0.445 (0.552)
PLAU	7 (2%)	282	0.109 (0.217)	0.279 (0.399)	0.00273 (0.0242)	0.0003 (0.00609)	0.0696 (0.165)	0.0116 (0.0563)	0.0101 (0.0515)	0.00686 (0.041)	0.555 (0.649)	0.0436 (0.124)
HIVEP3	27 (9%)	262	0.863 (0.909)	0.0182 (0.0727)	8e-05 (0.0029)	0.104 (0.211)	0.0043 (0.031)	0.319 (0.437)	0.0022 (0.0213)	0.00097 (0.0128)	0.103 (0.209)	0.0102 (0.0518)
SRCIN1	13 (4%)	276	0.145 (0.26)	0.395 (0.51)	0.00129 (0.0152)	0.00682 (0.0408)	0.0344 (0.107)	0.00908 (0.0491)	0.0654 (0.158)	0.0192 (0.0749)	0.754 (0.815)	0.0452 (0.126)
MTIF2	15 (5%)	274	0.0123 (0.0582)	0.00343 (0.0274)	0.0302 (0.099)	0.0395 (0.117)	0.0233 (0.0854)	0.078 (0.176)	0.00863 (0.0477)	0.224 (0.343)	0.294 (0.414)	0.227 (0.346)
KIAA1009	15 (5%)	274	0.646 (0.725)	0.277 (0.398)	0.00563 (0.0362)	0.00069 (0.0103)	0.0226 (0.0832)	0.00175 (0.0185)	0.0815 (0.181)	0.0224 (0.0826)	0.351 (0.468)	0.00687 (0.041)
COL12A1	46 (16%)	243	0.124 (0.234)	0.00181 (0.0189)	0.00245 (0.0225)	0.192 (0.31)	0.123 (0.233)	0.00803 (0.046)	1e-05 (0.000739)	5e-05 (0.00208)	0.157 (0.271)	0.00063 (0.00974)
IRS4	23 (8%)	266	0.0819 (0.181)	0.00092 (0.0124)	0.00231 (0.0219)	0.00013 (0.00378)	0.085 (0.186)	0.00044 (0.00767)	0.0271 (0.0925)	0.00754 (0.0437)	0.489 (0.589)	0.517 (0.614)
CASP8	18 (6%)	271	0.00336 (0.0272)	0.0774 (0.176)	0.0239 (0.0869)	0.0379 (0.113)	0.0232 (0.085)	0.255 (0.375)	0.155 (0.27)	0.0492 (0.133)	0.0492 (0.133)	0.223 (0.342)
WHSC1L1	16 (6%)	273	0.0788 (0.177)	0.00116 (0.0142)	0.0428 (0.122)	0.007 (0.0416)	0.0149 (0.0648)	0.0609 (0.152)	0.00586 (0.0373)	0.00084 (0.0118)	0.443 (0.551)	0.123 (0.234)
BTBD11	20 (7%)	269	0.181 (0.298)	0.00064 (0.00985)	0.213 (0.332)	0.153 (0.267)	0.014 (0.0628)	0.552 (0.647)	0.00323 (0.0266)	0.00126 (0.015)	0.00046 (0.00789)	0.0418 (0.121)
LRFN3	18 (6%)	271	0.191 (0.309)	0.0201 (0.0775)	0.0128 (0.0598)	0.00098 (0.0129)	0.0514 (0.137)	0.0417 (0.121)	0.0925 (0.196)	0.0145 (0.0638)	0.221 (0.341)	0.00309 (0.0259)
CHST15	13 (4%)	276	0.0722 (0.169)	0.00274 (0.0243)	0.00093 (0.0124)	0.00892 (0.0485)	0.012 (0.0574)	0.0728 (0.17)	0.0143 (0.0635)	0.0214 (0.0802)	0.255 (0.375)	0.365 (0.483)
IKBKE	12 (4%)	277	0.0551 (0.144)	0.0908 (0.194)	0.0139 (0.0627)	0.0384 (0.115)	0.00735 (0.0431)	0.126 (0.237)	0.0172 (0.0701)	0.0036 (0.0284)	0.0181 (0.0725)	0.052 (0.138)
TIMM44	5 (2%)	284	0.152 (0.266)	0.0136 (0.0616)	0.12 (0.231)	0.0134 (0.0612)	0.0424 (0.122)	0.00572 (0.0366)	0.247 (0.367)	0.00022 (0.00503)	0.658 (0.734)	0.0442 (0.124)
CROT	11 (4%)	278	0.0681 (0.162)	0.107 (0.216)	0.0427 (0.122)	0.0053 (0.0355)	0.0246 (0.0882)	0.0481 (0.131)	0.0475 (0.13)	0.0037 (0.0288)	0.385 (0.5)	0.0912 (0.195)
EGR1	10 (3%)	279	0.0366 (0.111)	0.0632 (0.155)	0.00109 (0.0137)	0.0186 (0.0735)	0.0309 (0.1)	0.189 (0.306)	0.0112 (0.055)	0.0289 (0.0958)	0.632 (0.712)	0.367 (0.484)
GTF3C4	12 (4%)	277	0.00517 (0.0348)	0.00578 (0.0369)	0.285 (0.405)	0.0756 (0.174)	0.0154 (0.0658)	0.0125 (0.0588)	0.0439 (0.124)	0.0245 (0.0879)	0.301 (0.421)	0.111 (0.219)
EPHA5	26 (9%)	263	0.15 (0.264)	0.00621 (0.0387)	0.0787 (0.177)	0.556 (0.651)	0.0199 (0.0769)	0.00202 (0.0201)	0.0363 (0.11)	0.0413 (0.12)	0.042 (0.121)	0.129 (0.24)
ZFP36L2	8 (3%)	281	0.499 (0.598)	0.00721 (0.0425)	0.0417 (0.121)	0.0206 (0.0784)	0.729 (0.795)	0.609 (0.692)	0.243 (0.363)	6e-05 (0.00238)	0.0213 (0.0799)	0.00089 (0.0122)
TIGD7	8 (3%)	281	0.112 (0.222)	0.00309 (0.0259)	0.0008 (0.0114)	0.0217 (0.0808)	0.00123 (0.0148)	0.00225 (0.0215)	0.062 (0.153)	0.0001 (0.00324)	0.423 (0.535)	0.246 (0.366)
SLC45A4	18 (6%)	271	0.0166 (0.069)	0.00019 (0.00466)	0.0895 (0.193)	0.00383 (0.0293)	0.0896 (0.193)	0.00135 (0.0156)	0.013 (0.0605)	0.01 (0.0514)	0.0805 (0.179)	0.101 (0.207)
FLG	62 (21%)	227	0.165 (0.282)	0.0683 (0.163)	0.0142 (0.0633)	0.00068 (0.0103)	0.232 (0.35)	0.00422 (0.0305)	0.00028 (0.00585)	0.00317 (0.0263)	0.186 (0.304)	6e-05 (0.00238)
FGF13	9 (3%)	280	0.0341 (0.107)	0.0101 (0.0515)	0.129 (0.24)	0.00269 (0.024)	0.0118 (0.0568)	0.0511 (0.137)	0.0263 (0.0915)	0.0129 (0.06)	0.146 (0.26)	0.314 (0.433)
LRRC43	10 (3%)	279	0.0353 (0.109)	0.035 (0.108)	0.00321 (0.0265)	0.0559 (0.145)	0.012 (0.0573)	0.163 (0.28)	0.0113 (0.0551)	0.00142 (0.0161)	0.218 (0.337)	0.125 (0.235)
ABCA5	20 (7%)	269	0.554 (0.649)	0.0339 (0.107)	0.0996 (0.206)	0.00313 (0.026)	0.0154 (0.0658)	0.309 (0.429)	0.00137 (0.0157)	0.0122 (0.058)	0.0117 (0.0565)	0.0655 (0.158)
PPARGC1B	7 (2%)	282	0.25 (0.37)	0.00361 (0.0284)	0.00281 (0.0247)	0.316 (0.434)	0.0705 (0.166)	7e-05 (0.00267)	0.793 (0.849)	0.0357 (0.109)	0.0103 (0.0519)	0.0177 (0.0713)
KIRREL2	12 (4%)	277	0.102 (0.208)	0.0384 (0.115)	0.0173 (0.0705)	0.0762 (0.174)	0.222 (0.342)	0.0323 (0.103)	0.0167 (0.0692)	0.00055 (0.00889)	0.389 (0.504)	0.003 (0.0255)
NID2	17 (6%)	272	0.00106 (0.0134)	0.0441 (0.124)	0.0634 (0.156)	0.0725 (0.169)	0.00379 (0.0291)	0.0194 (0.0754)	0.00038 (0.00699)	0.00034 (0.00658)	0.707 (0.776)	0.228 (0.347)
GPC4	9 (3%)	280	0.663 (0.739)	0.0442 (0.124)	0.899 (0.939)	0.0564 (0.146)	0.0282 (0.0945)	0.00535 (0.0357)	0.00194 (0.0196)	0.0288 (0.0955)	0.105 (0.213)	0.024 (0.087)
NF1	25 (9%)	264	0.00195 (0.0197)	0.00318 (0.0263)	0.101 (0.208)	0.00298 (0.0255)	0.14 (0.253)	0.00053 (0.0087)	0.0145 (0.0638)	0.0256 (0.09)	0.466 (0.569)	0.728 (0.795)
TRIM46	12 (4%)	277	0.312 (0.431)	0.00313 (0.026)	0.00394 (0.0296)	0.213 (0.332)	0.00292 (0.0254)	0.001 (0.013)	0.0168 (0.0692)	0.0009 (0.0122)	0.209 (0.328)	0.124 (0.235)
PTOV1	9 (3%)	280	0.0316 (0.102)	0.0313 (0.101)	0.402 (0.516)	0.0247 (0.0882)	0.0199 (0.0768)	0.0112 (0.0548)	0.143 (0.258)	0.0051 (0.0345)	0.921 (0.958)	0.628 (0.709)
MMP3	8 (3%)	281	0.196 (0.313)	0.248 (0.368)	0.0261 (0.091)	0.00415 (0.0303)	0.00184 (0.0191)	0.0005 (0.00842)	0.0271 (0.0924)	0.0411 (0.12)	0.17 (0.288)	0.267 (0.388)
WSB2	9 (3%)	280	0.112 (0.221)	0.0636 (0.156)	0.0176 (0.0711)	0.0001 (0.00324)	0.0316 (0.102)	0.225 (0.343)	0.00192 (0.0195)	0.0283 (0.0946)	0.0217 (0.0808)	0.311 (0.43)
SBF1	27 (9%)	262	0.00104 (0.0133)	0.00342 (0.0274)	0.0538 (0.142)	0.631 (0.711)	0.0164 (0.0686)	0.00014 (0.00395)	0.0176 (0.0713)	0.0331 (0.105)	0.188 (0.305)	0.265 (0.386)
EPHB6	11 (4%)	278	0.36 (0.477)	0.0381 (0.114)	0.00812 (0.0463)	0.00428 (0.0309)	0.00233 (0.022)	0.00603 (0.038)	0.422 (0.534)	0.0458 (0.127)	0.389 (0.504)	0.187 (0.305)
GCDH	8 (3%)	281	0.194 (0.312)	0.308 (0.427)	0.00111 (0.0139)	0.0118 (0.0567)	0.0221 (0.0819)	0.0153 (0.0655)	0.0041 (0.0302)	0.0276 (0.0936)	0.893 (0.934)	0.193 (0.311)
THBS1	15 (5%)	274	0.101 (0.208)	0.0256 (0.0901)	0.264 (0.385)	0.137 (0.249)	0.0184 (0.0731)	0.00279 (0.0246)	0.0111 (0.0548)	0.0333 (0.106)	0.255 (0.375)	0.0154 (0.0658)
ROCK1	16 (6%)	273	0.12 (0.23)	0.00535 (0.0357)	0.486 (0.586)	0.0239 (0.0869)	0.0204 (0.0779)	0.00603 (0.038)	0.03 (0.0984)	0.00011 (0.00352)	0.886 (0.928)	0.0727 (0.169)
LRP12	23 (8%)	266	0.0559 (0.145)	0.0821 (0.181)	0.0881 (0.19)	0.00164 (0.0177)	0.0293 (0.0967)	0.182 (0.298)	4e-05 (0.00184)	0.00101 (0.0131)	0.013 (0.0604)	0.00022 (0.00503)
MAN2B1	16 (6%)	273	0.0127 (0.0594)	0.00263 (0.0236)	0.332 (0.45)	0.0846 (0.185)	0.00109 (0.0137)	0.00371 (0.0288)	0.00154 (0.017)	3e-05 (0.00155)	0.395 (0.509)	0.424 (0.536)
RHOBTB2	16 (6%)	273	0.0314 (0.102)	0.0753 (0.173)	0.00082 (0.0116)	0.0757 (0.174)	0.0168 (0.0694)	0.0511 (0.137)	0.00125 (0.0149)	5e-05 (0.00208)	0.243 (0.363)	0.0205 (0.0782)
FANCA	7 (2%)	282	0.251 (0.37)	0.421 (0.534)	0.00349 (0.0277)	0.00012 (0.00366)	0.0214 (0.0802)	0.0146 (0.0639)	0.00995 (0.0511)	0.00687 (0.041)	0.399 (0.512)	0.292 (0.412)
ZNF217	14 (5%)	275	0.453 (0.558)	0.0392 (0.116)	0.0561 (0.145)	0.00137 (0.0157)	0.225 (0.343)	0.0232 (0.085)	0.00033 (0.00643)	0.0139 (0.0627)	0.138 (0.25)	0.014 (0.0628)
AHI1	9 (3%)	280	0.0344 (0.107)	0.332 (0.45)	0.01 (0.0514)	0.00448 (0.0316)	0.0311 (0.101)	0.201 (0.32)	0.0017 (0.0182)	0.00021 (0.00496)	0.0556 (0.145)	0.125 (0.236)
PPM1H	8 (3%)	281	0.221 (0.341)	0.421 (0.534)	8e-05 (0.0029)	1e-05 (0.000739)	0.086 (0.187)	0.0318 (0.102)	0.0278 (0.0938)	0.041 (0.12)	0.141 (0.255)	0.043 (0.123)
PHKG2	12 (4%)	277	0.0158 (0.0668)	0.00093 (0.0124)	0.0137 (0.062)	0.00968 (0.0502)	0.191 (0.309)	0.186 (0.303)	0.132 (0.243)	1e-05 (0.000739)	0.901 (0.94)	0.0113 (0.0554)
MVK	13 (4%)	276	0.0708 (0.166)	0.00085 (0.0119)	0.0537 (0.142)	5e-05 (0.00208)	0.107 (0.215)	0.0106 (0.0533)	0.0155 (0.0661)	5e-05 (0.00208)	0.223 (0.343)	0.121 (0.231)
WBP1	8 (3%)	281	0.453 (0.558)	0.122 (0.233)	0.00983 (0.0507)	0.0113 (0.0554)	0.0109 (0.0541)	0.164 (0.282)	0.00436 (0.0313)	0.00129 (0.0152)	0.465 (0.569)	0.131 (0.241)
CD4	15 (5%)	274	0.00935 (0.0496)	0.00205 (0.0203)	0.173 (0.29)	0.0585 (0.149)	0.151 (0.265)	0.125 (0.236)	0.0321 (0.103)	0.16 (0.276)	0.0131 (0.0608)	0.0296 (0.0974)
HLA-C	13 (4%)	276	0.0365 (0.111)	0.0373 (0.112)	0.0271 (0.0925)	0.0848 (0.186)	0.015 (0.0651)	0.00021 (0.00496)	0.0661 (0.159)	0.213 (0.332)	0.738 (0.803)	0.79 (0.846)
GLI1	17 (6%)	272	0.00565 (0.0363)	0.00559 (0.0361)	0.355 (0.473)	0.155 (0.27)	0.00335 (0.0272)	0.00016 (0.00427)	0.0922 (0.196)	0.00139 (0.0159)	0.281 (0.401)	0.445 (0.552)
SLC10A6	8 (3%)	281	0.178 (0.295)	0.0522 (0.139)	0.115 (0.225)	0.0337 (0.106)	0.00178 (0.0187)	0.1 (0.207)	0.00445 (0.0315)	0.00012 (0.00366)	0.196 (0.314)	0.0171 (0.0701)
TFE3	8 (3%)	281	0.192 (0.309)	0.0143 (0.0635)	0.0437 (0.124)	0.082 (0.181)	0.0662 (0.16)	0.0282 (0.0944)	0.0269 (0.0922)	0.0404 (0.119)	0.514 (0.612)	0.132 (0.242)
SERPINI1	8 (3%)	281	0.221 (0.341)	0.0598 (0.15)	0.0361 (0.11)	0.00104 (0.0133)	0.0199 (0.0768)	0.0913 (0.195)	0.0264 (0.0916)	0.118 (0.228)	0.326 (0.444)	0.0428 (0.122)
LEMD1	4 (1%)	285	0.39 (0.504)	0.0368 (0.111)	0.029 (0.0959)	0.0106 (0.0532)	0.0995 (0.206)	0.474 (0.575)	0.122 (0.232)	0.00125 (0.0149)	0.44 (0.548)	0.0423 (0.121)
PHACTR4	8 (3%)	281	0.799 (0.852)	0.00305 (0.0258)	0.00267 (0.0238)	0.00372 (0.0288)	0.0434 (0.123)	0.427 (0.537)	0.062 (0.153)	0.00217 (0.0211)	0.375 (0.491)	0.369 (0.486)
PAMR1	17 (6%)	272	0.0548 (0.143)	0.0119 (0.0572)	0.00072 (0.0107)	0.00029 (0.00597)	0.408 (0.521)	0.153 (0.267)	0.00445 (0.0315)	0.0119 (0.0569)	0.656 (0.732)	0.459 (0.563)
RNF145	18 (6%)	271	0.0611 (0.152)	0.0118 (0.0568)	0.654 (0.731)	0.341 (0.458)	0.0222 (0.0822)	0.0145 (0.0638)	0.0121 (0.0576)	0.037 (0.112)	0.0537 (0.142)	0.384 (0.5)
PRPF40B	14 (5%)	275	0.0355 (0.109)	0.0755 (0.173)	0.00161 (0.0175)	0.00434 (0.0312)	0.051 (0.137)	0.0529 (0.14)	0.0133 (0.061)	0.00288 (0.0251)	0.116 (0.226)	0.227 (0.346)
STAT5B	12 (4%)	277	0.33 (0.448)	0.148 (0.262)	0.00416 (0.0303)	0.0125 (0.0589)	0.00469 (0.0324)	0.124 (0.234)	0.0442 (0.124)	0.00065 (0.00997)	0.704 (0.774)	0.599 (0.685)
TP53BP1	16 (6%)	273	0.032 (0.103)	0.0425 (0.122)	0.123 (0.234)	0.0701 (0.166)	7e-05 (0.00267)	0.167 (0.285)	0.00799 (0.0458)	0.0201 (0.0774)	0.271 (0.391)	0.445 (0.553)
SF3B2	17 (6%)	272	0.0107 (0.0533)	0.114 (0.224)	0.094 (0.198)	0.208 (0.327)	0.00133 (0.0155)	0.0063 (0.0391)	0.0242 (0.0873)	0.0265 (0.0917)	0.343 (0.461)	0.102 (0.209)
ITGA6	6 (2%)	283	0.134 (0.245)	0.532 (0.628)	0.00966 (0.0502)	0.00063 (0.00974)	0.0151 (0.0653)	0.0365 (0.111)	0.138 (0.251)	0.0292 (0.0964)	0.521 (0.619)	0.13 (0.24)
RTN2	11 (4%)	278	0.027 (0.0922)	0.0361 (0.11)	0.11 (0.219)	0.134 (0.245)	0.0415 (0.121)	0.173 (0.29)	0.0468 (0.129)	0.0465 (0.129)	0.104 (0.211)	0.13 (0.24)
DNAJC1	11 (4%)	278	0.026 (0.0909)	0.0125 (0.059)	0.00387 (0.0294)	0.126 (0.237)	0.00784 (0.0451)	0.0393 (0.116)	0.0699 (0.165)	0.0646 (0.157)	0.948 (0.981)	0.599 (0.685)
HNF1B	6 (2%)	283	0.22 (0.34)	0.0108 (0.0537)	0.0418 (0.121)	0.0822 (0.182)	0.00714 (0.0422)	0.0221 (0.0819)	0.111 (0.22)	0.0286 (0.0952)	0.508 (0.607)	0.291 (0.411)
CDK12	19 (7%)	270	0.149 (0.263)	0.051 (0.137)	0.169 (0.286)	0.00307 (0.0258)	0.00105 (0.0134)	0.0322 (0.103)	0.0329 (0.105)	0.076 (0.174)	0.0328 (0.104)	0.746 (0.81)
PHKB	7 (2%)	282	0.0743 (0.172)	0.00393 (0.0296)	0.0439 (0.124)	0.0206 (0.0784)	0.0927 (0.196)	0.0393 (0.116)	0.078 (0.176)	0.0093 (0.0496)	0.455 (0.56)	0.119 (0.23)
FAM193A	15 (5%)	274	0.0396 (0.117)	0.175 (0.292)	0.171 (0.288)	0.414 (0.527)	0.0471 (0.13)	0.0337 (0.106)	0.0133 (0.061)	0.00366 (0.0287)	0.363 (0.481)	0.269 (0.389)
PCGF3	6 (2%)	283	0.222 (0.342)	0.021 (0.0792)	0.168 (0.286)	0.00343 (0.0274)	0.0541 (0.142)	0.0707 (0.166)	0.0207 (0.0785)	0.0281 (0.0943)	0.0338 (0.107)	0.0912 (0.195)
RB1CC1	10 (3%)	279	0.0251 (0.0893)	0.0064 (0.0393)	0.0926 (0.196)	0.151 (0.266)	0.00814 (0.0463)	0.00088 (0.0121)	0.204 (0.322)	0.014 (0.0628)	0.0985 (0.204)	0.132 (0.242)
OTX2	9 (3%)	280	0.21 (0.329)	0.0523 (0.139)	0.00513 (0.0346)	0.0144 (0.0636)	0.142 (0.256)	0.101 (0.208)	0.00176 (0.0186)	0.0126 (0.0591)	0.119 (0.23)	0.0161 (0.0677)
KIN	11 (4%)	278	0.00946 (0.0497)	0.139 (0.251)	0.00992 (0.0511)	0.0769 (0.175)	0.0136 (0.0618)	0.18 (0.296)	0.00395 (0.0296)	0.00394 (0.0296)	0.266 (0.386)	0.127 (0.238)
PIGO	10 (3%)	279	0.0186 (0.0735)	0.00037 (0.00687)	0.0916 (0.195)	0.00899 (0.0488)	0.0316 (0.102)	0.35 (0.468)	0.339 (0.457)	0.0013 (0.0152)	0.735 (0.801)	0.369 (0.486)
CLDN6	7 (2%)	282	0.109 (0.217)	0.00379 (0.0291)	0.0657 (0.159)	0.0739 (0.171)	0.186 (0.303)	0.025 (0.0891)	0.0487 (0.132)	0.0115 (0.056)	0.0117 (0.0566)	0.0926 (0.196)
HAUS6	11 (4%)	278	0.164 (0.282)	0.04 (0.118)	0.00923 (0.0495)	0.00076 (0.0111)	0.161 (0.277)	0.331 (0.449)	0.00393 (0.0296)	0.00375 (0.029)	0.292 (0.412)	0.171 (0.288)
TCHP	10 (3%)	279	0.24 (0.36)	0.621 (0.703)	0.0145 (0.0638)	0.0282 (0.0945)	0.0374 (0.112)	0.0422 (0.121)	0.0185 (0.0733)	0.0543 (0.143)	0.585 (0.672)	0.314 (0.433)
PGBD1	12 (4%)	277	0.016 (0.0675)	0.0444 (0.125)	0.0551 (0.144)	0.00722 (0.0425)	0.0781 (0.176)	0.05 (0.135)	0.0265 (0.0917)	0.0166 (0.0691)	0.263 (0.384)	0.753 (0.815)
FBXO21	12 (4%)	277	0.0253 (0.0896)	0.159 (0.275)	0.0156 (0.0664)	0.0496 (0.134)	0.0173 (0.0706)	0.00093 (0.0124)	0.0732 (0.17)	0.0819 (0.181)	0.363 (0.48)	1 (1.00)
ATM	30 (10%)	259	0.108 (0.216)	0.00083 (0.0117)	0.144 (0.259)	0.548 (0.643)	0.00255 (0.0232)	0.00617 (0.0385)	0.0128 (0.0598)	0.00739 (0.0432)	0.398 (0.512)	0.648 (0.726)
CEP57	7 (2%)	282	0.0773 (0.176)	0.352 (0.469)	0.129 (0.24)	0.0101 (0.0515)	0.0261 (0.091)	0.00368 (0.0287)	0.049 (0.133)	0.0355 (0.109)	0.554 (0.648)	0.634 (0.713)
CASD1	11 (4%)	278	0.0588 (0.149)	0.00117 (0.0143)	0.396 (0.511)	0.0657 (0.159)	0.00222 (0.0214)	0.133 (0.243)	0.0188 (0.074)	0.00041 (0.0073)	0.144 (0.258)	0.0174 (0.0707)
CADPS2	11 (4%)	278	0.78 (0.838)	0.0783 (0.177)	0.00116 (0.0142)	0.00415 (0.0303)	0.0608 (0.152)	0.00559 (0.0361)	0.128 (0.24)	0.00453 (0.0318)	0.586 (0.673)	0.00694 (0.0414)
USP8	7 (2%)	282	0.494 (0.593)	0.0963 (0.202)	0.027 (0.0922)	0.00532 (0.0356)	0.0336 (0.106)	0.0859 (0.187)	0.0095 (0.0497)	0.00668 (0.0403)	0.322 (0.441)	0.193 (0.31)
MYB	6 (2%)	283	0.408 (0.521)	0.0977 (0.203)	0.45 (0.556)	0.00502 (0.0341)	0.0336 (0.106)	0.00373 (0.0289)	0.0201 (0.0775)	0.0025 (0.0229)
KCNH2	13 (4%)	276	0.103 (0.21)	0.496 (0.595)	0.0203 (0.0776)	0.176 (0.294)	0.0145 (0.0638)	0.144 (0.258)	0.039 (0.116)	0.00759 (0.044)	0.107 (0.215)	0.00138 (0.0158)
OR4K5	12 (4%)	277	0.735 (0.801)	0.372 (0.488)	5e-05 (0.00208)	0.00881 (0.0481)	0.227 (0.346)	0.15 (0.264)	0.0268 (0.0922)	0.00779 (0.0448)	0.875 (0.918)	0.00656 (0.0399)
SYNJ2	16 (6%)	273	0.0554 (0.144)	0.165 (0.282)	0.515 (0.613)	0.0121 (0.0577)	0.0262 (0.0911)	0.0125 (0.0588)	0.00837 (0.047)	0.0651 (0.158)	0.18 (0.296)	0.0183 (0.073)
FYB	11 (4%)	278	0.219 (0.339)	0.0176 (0.0712)	0.18 (0.297)	0.00032 (0.00632)	0.11 (0.218)	0.00188 (0.0193)	0.0196 (0.076)	0.00035 (0.00665)	0.423 (0.535)	0.121 (0.231)
TACC2	30 (10%)	259	0.0299 (0.0983)	0.228 (0.347)	0.123 (0.234)	0.161 (0.278)	0.00543 (0.0358)	0.044 (0.124)	0.0128 (0.0598)	0.0006 (0.00937)	0.332 (0.449)	0.126 (0.237)
TNK2	11 (4%)	278	0.215 (0.335)	0.147 (0.262)	0.0414 (0.121)	0.22 (0.34)	0.0473 (0.13)	0.0348 (0.108)	0.0224 (0.0826)	0.0851 (0.186)	0.0101 (0.0515)	0.248 (0.368)
EDNRB	25 (9%)	264	0.368 (0.485)	0.00309 (0.0259)	0.103 (0.21)	1e-05 (0.000739)	0.012 (0.0574)	0.196 (0.314)	0.00027 (0.00583)	0.00057 (0.0091)	0.114 (0.223)	0.0886 (0.191)
HDLBP	24 (8%)	265	0.00715 (0.0422)	0.0617 (0.153)	0.263 (0.385)	0.255 (0.375)	0.00079 (0.0113)	0.00263 (0.0236)	0.00019 (0.00466)	0.00055 (0.00889)	0.403 (0.517)	0.0527 (0.139)
NOS3	10 (3%)	279	0.572 (0.662)	0.122 (0.232)	0.325 (0.444)	0.00395 (0.0296)	0.0028 (0.0246)	0.00171 (0.0182)	0.0182 (0.0726)	0.0146 (0.0639)	0.534 (0.63)	0.13 (0.241)
ZNF334	12 (4%)	277	0.259 (0.379)	0.24 (0.36)	0.0153 (0.0657)	0.00019 (0.00466)	0.0725 (0.169)	0.00867 (0.0478)	0.00627 (0.039)	0.00091 (0.0123)	0.341 (0.458)	0.132 (0.242)
AKAP11	14 (5%)	275	0.225 (0.344)	0.114 (0.223)	0.0288 (0.0956)	0.0142 (0.0633)	0.0575 (0.147)	0.00595 (0.0376)	0.0507 (0.136)	0.00435 (0.0312)	0.167 (0.285)	0.00856 (0.0475)
CNKSR1	7 (2%)	282	0.248 (0.367)	0.0214 (0.0801)	0.287 (0.408)	0.0165 (0.0689)	0.32 (0.438)	0.00106 (0.0134)	0.0093 (0.0496)	0.036 (0.11)	0.187 (0.304)	0.633 (0.713)
ATRIP	5 (2%)	284	0.511 (0.61)	0.036 (0.11)	0.00249 (0.0228)	0.00064 (0.00985)	0.053 (0.14)	9e-05 (0.00308)	0.202 (0.321)	0.0784 (0.177)	0.0801 (0.179)	0.0441 (0.124)
ELK3	6 (2%)	283	0.454 (0.559)	0.188 (0.305)	0.00295 (0.0255)	0.00496 (0.0338)	0.00189 (0.0193)	0.0917 (0.195)	0.0204 (0.0779)	0.00226 (0.0215)	0.611 (0.695)	0.0904 (0.194)
SAMD9L	18 (6%)	271	0.136 (0.248)	0.0327 (0.104)	0.0526 (0.139)	0.0831 (0.183)	0.00512 (0.0346)	0.0141 (0.0632)	0.0132 (0.0609)	0.0267 (0.0922)	0.468 (0.571)	0.498 (0.598)
COL20A1	18 (6%)	271	0.188 (0.305)	0.012 (0.0573)	0.0158 (0.0668)	0.00536 (0.0357)	0.00753 (0.0437)	0.392 (0.507)	0.165 (0.283)	0.0002 (0.00481)	0.562 (0.655)	0.32 (0.438)
FIGNL1	9 (3%)	280	0.148 (0.263)	0.091 (0.195)	0.00192 (0.0195)	0.00447 (0.0316)	0.0242 (0.0873)	0.104 (0.211)	0.145 (0.26)	0.00558 (0.0361)	0.482 (0.583)	0.0452 (0.126)
ATL3	12 (4%)	277	0.00607 (0.0381)	0.0351 (0.109)	0.202 (0.321)	0.00716 (0.0423)	0.137 (0.25)	0.124 (0.235)	0.00232 (0.0219)	0.00453 (0.0318)	0.47 (0.573)	0.224 (0.343)
PUS7	10 (3%)	279	0.043 (0.123)	0.16 (0.277)	0.0915 (0.195)	0.0193 (0.0753)	0.00804 (0.046)	0.0278 (0.0938)	0.012 (0.0573)	0.0895 (0.193)	0.593 (0.68)	0.628 (0.709)
RALGDS	13 (4%)	276	0.0177 (0.0715)	0.0404 (0.119)	0.375 (0.491)	0.123 (0.233)	0.0677 (0.162)	0.04 (0.118)	0.0151 (0.0653)	0.00576 (0.0368)	0.794 (0.849)	0.368 (0.485)
TCF7	9 (3%)	280	0.0417 (0.121)	0.655 (0.732)	0.0379 (0.113)	0.0191 (0.0748)	0.0419 (0.121)	0.0457 (0.127)	0.146 (0.26)	0.379 (0.495)	0.945 (0.978)	0.751 (0.814)
C19ORF70	6 (2%)	283	0.155 (0.27)	0.0138 (0.0622)	0.0278 (0.0939)	0.271 (0.392)	0.0434 (0.124)	0.117 (0.227)	0.17 (0.288)	0.0285 (0.095)	0.0857 (0.187)	0.00458 (0.0319)
KIAA0226	12 (4%)	277	0.0724 (0.169)	0.0301 (0.0986)	0.264 (0.385)	0.466 (0.569)	0.0161 (0.0676)	0.0813 (0.18)	0.00234 (0.022)	0.00555 (0.0361)	0.486 (0.587)	0.0448 (0.125)
ETV1	10 (3%)	279	0.5 (0.599)	0.176 (0.293)	0.00101 (0.0131)	0.0123 (0.0582)	0.319 (0.438)	0.291 (0.411)	0.00819 (0.0464)	0.0403 (0.118)	0.188 (0.305)	0.0466 (0.129)
NOL6	17 (6%)	272	0.0775 (0.176)	0.00012 (0.00366)	0.00921 (0.0495)	0.167 (0.284)	0.0414 (0.121)	0.0856 (0.186)	0.00507 (0.0344)	1e-05 (0.000739)	0.579 (0.668)	0.449 (0.556)
RNMT	8 (3%)	281	0.111 (0.22)	0.219 (0.339)	0.0035 (0.0278)	0.00995 (0.0511)	0.00346 (0.0275)	0.0511 (0.137)	0.00458 (0.0319)	0.0404 (0.119)	0.464 (0.567)	0.313 (0.432)
LSS	9 (3%)	280	0.0595 (0.15)	0.00535 (0.0357)	5e-05 (0.00208)	0.0334 (0.106)	0.00193 (0.0196)	0.188 (0.306)	0.115 (0.225)	0.04 (0.118)	0.369 (0.485)	0.7 (0.77)
NUAK1	16 (6%)	273	0.496 (0.595)	0.0265 (0.0917)	0.0301 (0.0988)	0.003 (0.0255)	0.0592 (0.149)	0.0404 (0.119)	0.142 (0.256)	0.0645 (0.157)	0.941 (0.975)	0.042 (0.121)
ZBTB7C	15 (5%)	274	0.0308 (0.1)	2e-05 (0.00123)	0.111 (0.22)	0.0834 (0.183)	0.271 (0.391)	0.185 (0.303)	0.0807 (0.179)	0.018 (0.0721)	0.0804 (0.179)	0.00928 (0.0496)
DDC	9 (3%)	280	0.0115 (0.056)	0.503 (0.602)	0.155 (0.27)	0.183 (0.299)	0.0062 (0.0387)	0.0896 (0.193)	0.00176 (0.0186)	0.0125 (0.059)	0.382 (0.498)	0.44 (0.548)
IWS1	12 (4%)	277	0.0472 (0.13)	0.0639 (0.156)	0.152 (0.266)	0.00275 (0.0243)	0.384 (0.5)	0.0931 (0.197)	0.0262 (0.0911)	0.00153 (0.0169)	0.814 (0.865)	0.293 (0.413)
MUC6	34 (12%)	255	0.915 (0.952)	0.12 (0.231)	0.196 (0.314)	0.074 (0.171)	0.00171 (0.0182)	0.00025 (0.00553)	0.00432 (0.0311)	0.00561 (0.0362)	0.0917 (0.195)	0.153 (0.267)
ARHGAP5	17 (6%)	272	0.00539 (0.0357)	0.0154 (0.0658)	0.331 (0.448)	0.591 (0.678)	0.00332 (0.027)	0.0154 (0.0658)	0.124 (0.234)	0.171 (0.288)	0.403 (0.517)	0.0578 (0.147)
SETDB2	10 (3%)	279	0.287 (0.408)	0.0605 (0.151)	0.0203 (0.0776)	0.174 (0.292)	0.00079 (0.0113)	0.113 (0.223)	0.0105 (0.053)	9e-05 (0.00308)	0.704 (0.774)	0.294 (0.414)
CTSC	10 (3%)	279	0.0184 (0.0731)	0.0214 (0.0802)	0.129 (0.24)	0.106 (0.214)	0.0407 (0.119)	8e-05 (0.0029)	0.0566 (0.146)	0.154 (0.269)	0.181 (0.298)	0.627 (0.708)
USP21	13 (4%)	276	0.105 (0.213)	0.0781 (0.176)	0.265 (0.386)	0.0246 (0.0882)	0.347 (0.465)	0.0745 (0.172)	0.0152 (0.0653)	0.00035 (0.00665)	0.459 (0.563)	0.00636 (0.0393)
PAX2	8 (3%)	281	0.245 (0.365)	0.0476 (0.131)	0.00109 (0.0137)	0.00365 (0.0287)	0.0664 (0.16)	0.0253 (0.0897)	0.0613 (0.152)	0.105 (0.213)	0.596 (0.683)	0.534 (0.63)
RGL2	12 (4%)	277	0.105 (0.213)	0.0858 (0.187)	0.0198 (0.0767)	0.00299 (0.0255)	0.0022 (0.0213)	0.138 (0.25)	0.13 (0.24)	0.016 (0.0676)	0.213 (0.332)	0.11 (0.218)
ATP6V1C2	12 (4%)	277	0.0579 (0.147)	0.0298 (0.0982)	0.0929 (0.197)	0.152 (0.267)	0.0151 (0.0653)	0.306 (0.425)	0.00212 (0.0208)	0.0165 (0.0689)	0.123 (0.234)	0.601 (0.687)
ABCC4	17 (6%)	272	0.00974 (0.0505)	0.0654 (0.158)	0.316 (0.434)	0.176 (0.294)	0.0355 (0.109)	0.0281 (0.0943)	0.00456 (0.0318)	0.115 (0.224)	0.112 (0.221)	0.472 (0.574)
ZKSCAN5	9 (3%)	280	0.0305 (0.0997)	0.573 (0.663)	0.0266 (0.0917)	0.634 (0.713)	0.0327 (0.104)	0.0243 (0.0874)	0.115 (0.225)	0.123 (0.234)	0.101 (0.208)	0.246 (0.366)
CCDC153	8 (3%)	281	0.196 (0.314)	0.0174 (0.0707)	0.572 (0.662)	0.37 (0.487)	0.0703 (0.166)	0.0237 (0.0865)	0.169 (0.287)	0.0182 (0.0727)	0.56 (0.654)	0.0455 (0.127)
ALDH3A1	10 (3%)	279	0.119 (0.23)	0.0526 (0.139)	0.0039 (0.0296)	0.0678 (0.162)	0.0573 (0.147)	0.00096 (0.0127)	0.0107 (0.0534)	0.106 (0.214)	0.0486 (0.132)	0.0917 (0.195)
NOX5	14 (5%)	275	0.0366 (0.111)	0.149 (0.263)	0.485 (0.586)	0.368 (0.485)	0.34 (0.457)	0.526 (0.622)	0.00563 (0.0362)	0.00125 (0.0149)	0.261 (0.383)	0.0439 (0.124)
IFRD1	8 (3%)	281	0.113 (0.222)	0.0114 (0.0556)	0.0253 (0.0896)	0.422 (0.534)	0.16 (0.276)	0.139 (0.251)	0.00477 (0.0328)	0.0386 (0.115)	0.384 (0.499)	0.314 (0.433)
FANCE	7 (2%)	282	0.175 (0.293)	0.348 (0.466)	0.00301 (0.0256)	0.00259 (0.0234)	0.0441 (0.124)	0.178 (0.295)	0.0104 (0.0527)	0.0919 (0.196)	0.693 (0.766)	0.29 (0.41)
PALB2	9 (3%)	280	0.209 (0.328)	0.0732 (0.17)	0.0152 (0.0653)	0.0282 (0.0945)	0.00061 (0.00947)	0.00045 (0.00775)	0.117 (0.228)	0.104 (0.212)	0.821 (0.872)	0.699 (0.769)
RNF111	10 (3%)	279	0.0657 (0.159)	0.107 (0.215)	0.00671 (0.0404)	0.0269 (0.0922)	0.313 (0.432)	0.0334 (0.106)	0.0793 (0.178)	0.0294 (0.0971)	0.756 (0.816)	0.23 (0.349)
RAD51AP2	12 (4%)	277	0.425 (0.536)	0.736 (0.802)	0.0201 (0.0774)	0.0319 (0.102)	0.384 (0.5)	0.0151 (0.0652)	0.0108 (0.0537)	0.207 (0.325)	0.108 (0.216)	0.123 (0.234)
SLC26A7	14 (5%)	275	0.108 (0.216)	0.384 (0.5)	0.0955 (0.2)	0.105 (0.213)	0.00719 (0.0424)	0.018 (0.0721)	0.0496 (0.134)	0.281 (0.401)	0.0893 (0.192)	0.00357 (0.0282)
ERBB3	31 (11%)	258	0.0245 (0.088)	0.0878 (0.19)	0.00044 (0.00767)	0.033 (0.105)	0.588 (0.675)	0.0171 (0.0701)	0.0995 (0.206)	0.336 (0.453)	0.182 (0.299)	0.183 (0.299)
KIAA0406	12 (4%)	277	0.466 (0.569)	0.0187 (0.0736)	0.0582 (0.148)	0.00115 (0.0142)	0.0849 (0.186)	0.178 (0.295)	0.132 (0.242)	0.0166 (0.0691)	0.157 (0.272)	0.0242 (0.0873)
FZD3	10 (3%)	279	0.129 (0.24)	0.0358 (0.11)	0.0945 (0.199)	0.154 (0.269)	0.486 (0.587)	0.0117 (0.0565)	0.0112 (0.0548)	0.0121 (0.0577)	0.549 (0.644)	0.123 (0.234)
AXIN2	15 (5%)	274	0.116 (0.226)	0.00518 (0.0348)	0.172 (0.289)	0.192 (0.31)	0.00446 (0.0315)	0.0678 (0.162)	0.0129 (0.0601)	0.00884 (0.0482)	0.218 (0.338)	0.091 (0.195)
VPRBP	12 (4%)	277	0.00593 (0.0376)	0.249 (0.369)	0.0582 (0.148)	0.106 (0.214)	0.00333 (0.027)	0.165 (0.282)	0.017 (0.0699)	0.00172 (0.0183)	0.869 (0.915)	0.753 (0.814)
C20ORF160	8 (3%)	281	0.193 (0.311)	0.378 (0.494)	0.0148 (0.0645)	0.264 (0.385)	0.0342 (0.107)	0.0167 (0.0691)	0.0278 (0.0939)	0.119 (0.23)	0.354 (0.471)	0.267 (0.387)
EFHA1	9 (3%)	280	0.139 (0.251)	0.0634 (0.156)	1 (1.00)	0.103 (0.209)	0.00413 (0.0303)	0.0455 (0.127)	0.0258 (0.0906)	0.0402 (0.118)	0.369 (0.486)	0.0706 (0.166)
WASF3	11 (4%)	278	0.714 (0.782)	0.00022 (0.00503)	1 (1.00)	0.0154 (0.0658)	0.0991 (0.205)	0.035 (0.108)	0.214 (0.333)	0.00226 (0.0215)	0.586 (0.673)	0.883 (0.926)
ZNF124	9 (3%)	280	0.311 (0.43)	0.41 (0.523)	0.0439 (0.124)	0.178 (0.295)	0.00538 (0.0357)	0.0063 (0.0391)	0.145 (0.26)	0.0125 (0.059)	0.401 (0.515)	0.472 (0.574)
TBC1D22B	7 (2%)	282	0.344 (0.462)	0.0233 (0.0854)	0.00271 (0.0241)	0.00058 (0.00918)	0.218 (0.338)	0.0148 (0.0644)	0.436 (0.545)	0.0835 (0.183)	0.385 (0.501)	0.373 (0.488)
GLT8D1	8 (3%)	281	0.114 (0.223)	0.0476 (0.131)	0.0869 (0.188)	0.18 (0.296)	0.0464 (0.128)	0.0876 (0.189)	0.00454 (0.0318)	0.04 (0.118)	0.127 (0.239)	0.475 (0.576)
KLC2	11 (4%)	278	0.408 (0.521)	0.672 (0.747)	0.129 (0.24)	0.0284 (0.0946)	0.0838 (0.184)	0.0174 (0.0709)	0.00557 (0.0361)	0.0153 (0.0657)	0.148 (0.263)	0.753 (0.815)
USP15	6 (2%)	283	0.177 (0.294)	0.119 (0.23)	0.45 (0.556)	0.011 (0.0544)	0.0151 (0.0653)	0.0109 (0.054)	0.021 (0.0792)	0.114 (0.223)	0.482 (0.583)	0.633 (0.713)
UBC	8 (3%)	281	0.455 (0.56)	0.19 (0.308)	0.00546 (0.0359)	0.0115 (0.0559)	0.0763 (0.175)	0.00585 (0.0373)	0.0618 (0.153)	0.0185 (0.0733)	0.863 (0.91)	1 (1.00)
OR5M3	15 (5%)	274	0.493 (0.593)	0.13 (0.24)	0.0353 (0.109)	0.253 (0.373)	0.041 (0.12)	0.0334 (0.106)	0.193 (0.311)	0.0156 (0.0664)	0.0742 (0.172)	0.112 (0.221)
MYEOV	8 (3%)	281	0.0784 (0.177)	0.00956 (0.0499)	0.174 (0.292)	0.00454 (0.0318)	0.0417 (0.121)	0.0509 (0.137)	0.061 (0.152)	0.00132 (0.0154)	0.265 (0.386)	0.0927 (0.196)
C15ORF52	8 (3%)	281	0.111 (0.22)	0.00351 (0.0278)	0.00543 (0.0358)	0.179 (0.296)	0.308 (0.428)	0.0738 (0.171)	0.0625 (0.154)	0.0692 (0.164)	0.0217 (0.0808)	0.0166 (0.0691)
PKN2	10 (3%)	279	0.0649 (0.158)	0.0132 (0.0609)	0.362 (0.48)	0.174 (0.291)	0.243 (0.363)	0.0341 (0.107)	0.0558 (0.145)	0.00898 (0.0488)	0.685 (0.76)	0.00868 (0.0478)
PRMT8	8 (3%)	281	0.0579 (0.147)	0.0758 (0.174)	0.0269 (0.0922)	0.0544 (0.143)	0.0708 (0.166)	0.21 (0.329)	0.00442 (0.0315)	0.041 (0.12)	0.145 (0.26)	0.0358 (0.11)
OPLAH	14 (5%)	275	0.0547 (0.143)	0.0753 (0.173)	0.0932 (0.197)	0.0003 (0.00609)	0.0239 (0.0869)	0.00021 (0.00496)	0.0277 (0.0938)	0.132 (0.243)	0.599 (0.685)	0.323 (0.442)
SEC24C	10 (3%)	279	0.126 (0.237)	0.0394 (0.117)	0.172 (0.29)	0.0616 (0.153)	0.274 (0.395)	0.0281 (0.0944)	0.011 (0.0544)	0.011 (0.0544)	0.241 (0.361)	0.12 (0.231)
WDR59	11 (4%)	278	0.377 (0.492)	0.203 (0.322)	0.0403 (0.119)	0.0156 (0.0663)	0.265 (0.386)	0.0768 (0.175)	0.129 (0.24)	0.0421 (0.121)	0.439 (0.547)	0.0447 (0.125)
RUSC2	19 (7%)	270	0.055 (0.144)	0.00411 (0.0303)	0.0942 (0.199)	0.132 (0.242)	0.0102 (0.0517)	0.0284 (0.0946)	0.00181 (0.0189)	0.0943 (0.199)	0.146 (0.261)	0.19 (0.308)
CD93	11 (4%)	278	0.223 (0.342)	0.0182 (0.0727)	0.0536 (0.141)	5e-05 (0.00208)	0.406 (0.519)	0.071 (0.167)	0.0194 (0.0755)	0.00377 (0.0291)	0.256 (0.376)	0.269 (0.389)
GON4L	10 (3%)	279	0.12 (0.231)	0.00224 (0.0214)	0.278 (0.398)	0.0101 (0.0515)	0.0993 (0.205)	0.00437 (0.0313)	0.205 (0.323)	0.0289 (0.0958)	0.569 (0.66)	0.873 (0.918)
THEMIS	8 (3%)	281	0.0575 (0.147)	0.109 (0.217)	0.0379 (0.113)	0.00451 (0.0317)	0.0436 (0.124)	0.351 (0.469)	0.0607 (0.152)	0.00222 (0.0214)	0.322 (0.441)	0.294 (0.414)
ZNF711	13 (4%)	276	0.204 (0.323)	0.0341 (0.107)	0.0162 (0.0679)	0.0697 (0.165)	0.764 (0.824)	0.105 (0.213)	0.0397 (0.117)	0.0149 (0.0647)	0.12 (0.23)	0.875 (0.918)
SEZ6	10 (3%)	279	0.0638 (0.156)	0.00237 (0.0222)	0.325 (0.443)	0.00381 (0.0292)	0.099 (0.205)	0.00286 (0.025)	0.0564 (0.146)	0.0535 (0.141)	0.976 (1.00)	0.0111 (0.0548)
STK38	6 (2%)	283	0.408 (0.522)	0.108 (0.216)	0.171 (0.289)	0.00403 (0.0299)	0.0254 (0.0897)	0.144 (0.258)	0.0199 (0.0769)	0.0287 (0.0952)	0.692 (0.765)	0.294 (0.414)
PTPN4	9 (3%)	280	0.122 (0.232)	0.0598 (0.15)	0.13 (0.24)	0.171 (0.288)	0.107 (0.215)	0.0283 (0.0946)	0.0255 (0.0898)	0.0133 (0.061)	0.039 (0.116)	0.291 (0.411)
LIAS	5 (2%)	284	0.299 (0.419)	0.0138 (0.0625)	0.399 (0.512)	0.00153 (0.0169)	0.0441 (0.124)	0.302 (0.422)	0.0571 (0.146)	0.0103 (0.0521)	0.251 (0.37)	0.192 (0.31)
TAF7L	7 (2%)	282	0.251 (0.37)	0.00658 (0.04)	0.266 (0.387)	0.438 (0.547)	0.00052 (0.00864)	0.00792 (0.0455)	0.0094 (0.0497)	0.108 (0.216)	0.301 (0.421)	0.827 (0.877)
WAPAL	13 (4%)	276	0.0281 (0.0943)	0.0709 (0.167)	0.0954 (0.2)	0.108 (0.216)	0.00384 (0.0293)	0.217 (0.337)	0.00772 (0.0445)	0.0287 (0.0953)	0.533 (0.629)	0.599 (0.685)
SPATA5L1	7 (2%)	282	0.577 (0.666)	0.00033 (0.00643)	0.0447 (0.125)	0.0742 (0.172)	0.00744 (0.0434)	0.0347 (0.108)	0.794 (0.849)	0.196 (0.314)	0.983 (1.00)	0.725 (0.793)
KIAA1539	6 (2%)	283	0.223 (0.343)	0.0209 (0.079)	0.0028 (0.0246)	0.0816 (0.181)	0.00732 (0.043)	0.0817 (0.181)	0.578 (0.667)	0.0286 (0.0952)	0.441 (0.549)	0.0927 (0.196)
ITSN2	16 (6%)	273	0.274 (0.395)	0.00536 (0.0357)	0.712 (0.781)	0.283 (0.403)	0.0802 (0.179)	0.0268 (0.0922)	0.00081 (0.0115)	0.002 (0.02)	0.144 (0.259)	0.165 (0.283)
OGFRL1	10 (3%)	279	0.186 (0.303)	0.231 (0.35)	0.0033 (0.0269)	0.0012 (0.0144)	0.0542 (0.142)	0.139 (0.251)	0.00826 (0.0467)	0.00141 (0.0161)	0.588 (0.675)	0.314 (0.433)
KIAA1462	22 (8%)	267	0.316 (0.434)	0.0652 (0.158)	0.00223 (0.0214)	0.281 (0.401)	0.23 (0.349)	0.13 (0.24)	0.0168 (0.0692)	0.0291 (0.0961)	0.489 (0.59)	0.0187 (0.0736)
LUC7L3	6 (2%)	283	0.669 (0.743)	0.0599 (0.151)	0.0435 (0.124)	0.0741 (0.172)	0.175 (0.292)	0.00942 (0.0497)	0.578 (0.667)	0.0344 (0.107)	0.057 (0.146)	0.017 (0.0698)
NARG2	11 (4%)	278	0.0675 (0.161)	0.0767 (0.175)	0.0524 (0.139)	0.0231 (0.0848)	0.0651 (0.158)	0.122 (0.233)	0.0342 (0.107)	0.0146 (0.0639)	0.608 (0.691)	0.0238 (0.0868)
NEK8	11 (4%)	278	0.0717 (0.168)	0.736 (0.802)	0.0525 (0.139)	0.00227 (0.0216)	0.0139 (0.0626)	0.184 (0.3)	0.00954 (0.0499)	0.0464 (0.128)	0.265 (0.386)	0.245 (0.365)
GFOD1	13 (4%)	276	0.246 (0.366)	0.616 (0.698)	0.0279 (0.0939)	0.00338 (0.0272)	0.202 (0.321)	0.0907 (0.194)	0.0385 (0.115)	0.0306 (0.1)	0.415 (0.529)	0.713 (0.782)
GPATCH4	8 (3%)	281	0.779 (0.837)	0.253 (0.373)	0.168 (0.285)	0.00346 (0.0275)	0.043 (0.123)	0.334 (0.451)	0.0826 (0.182)	0.0128 (0.0598)	0.215 (0.335)	0.0172 (0.0701)
GANAB	10 (3%)	279	0.0415 (0.121)	0.0156 (0.0663)	0.396 (0.51)	0.0584 (0.148)	0.0157 (0.0664)	0.0012 (0.0144)	0.34 (0.457)	0.0542 (0.142)	0.318 (0.436)	0.459 (0.563)
TSPYL5	9 (3%)	280	0.211 (0.33)	0.0627 (0.155)	0.129 (0.24)	0.692 (0.765)	0.0657 (0.159)	0.0271 (0.0924)	0.0271 (0.0924)	0.0274 (0.0929)	0.00627 (0.039)	0.244 (0.364)
SMAD2	9 (3%)	280	0.25 (0.37)	0.0221 (0.0819)	0.797 (0.851)	0.369 (0.486)	0.00767 (0.0444)	0.0253 (0.0897)	0.145 (0.26)	0.0125 (0.059)	0.495 (0.594)	0.288 (0.409)
DHRS9	9 (3%)	280	0.392 (0.506)	0.0463 (0.128)	0.00966 (0.0502)	0.259 (0.379)	0.00166 (0.0178)	0.066 (0.159)	0.144 (0.259)	0.0287 (0.0953)	0.525 (0.622)	0.633 (0.713)
HLA-F	11 (4%)	278	0.0257 (0.0902)	0.499 (0.598)	0.0363 (0.11)	0.0767 (0.175)	0.168 (0.286)	0.0585 (0.149)	0.00522 (0.035)	0.0857 (0.187)	0.235 (0.355)	0.00164 (0.0177)
KCNC1	7 (2%)	282	0.175 (0.293)	0.0088 (0.0481)	0.452 (0.558)	0.081 (0.18)	0.0156 (0.0664)	0.0314 (0.102)	0.0779 (0.176)	0.00916 (0.0493)	0.542 (0.638)	0.12 (0.231)
PLEKHH3	9 (3%)	280	0.0569 (0.146)	0.485 (0.586)	0.203 (0.322)	0.0654 (0.158)	0.0107 (0.0534)	0.119 (0.23)	0.00181 (0.0189)	0.0498 (0.134)	0.142 (0.256)	0.00538 (0.0357)
SCN9A	28 (10%)	261	0.795 (0.849)	0.0116 (0.0561)	0.295 (0.415)	0.197 (0.315)	0.0102 (0.0519)	0.0801 (0.179)	0.118 (0.228)	0.0132 (0.0609)	0.231 (0.35)	0.0373 (0.112)
DENND1C	7 (2%)	282	0.573 (0.663)	0.505 (0.604)	0.00946 (0.0497)	0.0187 (0.0736)	0.0439 (0.124)	0.427 (0.537)	0.0479 (0.131)	0.0956 (0.2)	0.559 (0.654)	0.0926 (0.196)
NPR3	11 (4%)	278	0.154 (0.269)	0.572 (0.662)	0.0413 (0.12)	0.00416 (0.0303)	0.0364 (0.11)	0.53 (0.626)	0.00531 (0.0355)	0.0699 (0.165)	0.593 (0.68)	0.872 (0.917)
MAGI2	28 (10%)	261	0.375 (0.491)	0.314 (0.433)	0.00329 (0.0269)	0.0438 (0.124)	0.0684 (0.163)	0.371 (0.487)	0.00203 (0.0202)	0.0388 (0.115)	0.176 (0.293)	0.162 (0.279)
KANK4	10 (3%)	279	0.14 (0.253)	0.0454 (0.127)	0.00968 (0.0502)	0.0547 (0.143)	0.16 (0.276)	0.0147 (0.0643)	0.0567 (0.146)	0.014 (0.0628)	0.762 (0.822)	0.123 (0.233)
SOS2	19 (7%)	270	0.0169 (0.0697)	0.0565 (0.146)	0.905 (0.944)	0.312 (0.431)	0.00733 (0.043)	0.00337 (0.0272)	0.755 (0.816)	0.0317 (0.102)	0.114 (0.224)	0.387 (0.503)
SMARCAL1	13 (4%)	276	0.489 (0.59)	0.00681 (0.0408)	0.434 (0.544)	0.139 (0.252)	0.924 (0.961)	0.0247 (0.0882)	0.314 (0.433)	0.0188 (0.0737)	0.971 (1.00)	0.0339 (0.107)
CNTROB	6 (2%)	283	0.406 (0.519)	0.0602 (0.151)	0.0268 (0.0922)	0.0818 (0.181)	0.0249 (0.0889)	0.174 (0.292)	0.02 (0.0772)	7e-05 (0.00267)	0.741 (0.806)	0.291 (0.411)
PSD	16 (6%)	273	0.0877 (0.19)	0.00034 (0.00658)	0.0562 (0.145)	0.229 (0.348)	0.0722 (0.169)	0.0152 (0.0653)	0.00815 (0.0463)	0.00586 (0.0373)	0.22 (0.34)	0.663 (0.739)
KIAA1217	19 (7%)	270	0.165 (0.283)	0.00831 (0.0469)	0.0031 (0.0259)	0.17 (0.288)	0.0863 (0.188)	0.00212 (0.0208)	0.182 (0.298)	0.019 (0.0745)	0.541 (0.637)	0.254 (0.374)
EPB41L5	8 (3%)	281	0.111 (0.219)	0.11 (0.218)	0.0003 (0.00609)	0.00546 (0.0359)	0.00645 (0.0395)	0.0879 (0.19)	0.063 (0.155)	0.0107 (0.0534)	0.0706 (0.166)	0.13 (0.24)
ARID5B	11 (4%)	278	0.222 (0.342)	0.017 (0.07)	0.0185 (0.0732)	0.241 (0.361)	0.147 (0.262)	0.0035 (0.0278)	0.423 (0.535)	0.0467 (0.129)	0.0928 (0.196)	0.129 (0.24)
SLC7A13	9 (3%)	280	0.0349 (0.108)	0.00565 (0.0363)	0.172 (0.29)	0.116 (0.226)	0.0664 (0.16)	0.1 (0.207)	0.0258 (0.0905)	0.0403 (0.118)	0.614 (0.697)	0.223 (0.342)
CLSTN1	11 (4%)	278	0.347 (0.465)	0.0347 (0.108)	0.0428 (0.122)	0.172 (0.289)	0.235 (0.354)	0.429 (0.54)	0.0102 (0.0517)	0.047 (0.13)	0.329 (0.447)	0.129 (0.24)
SMAD4	24 (8%)	265	0.374 (0.49)	0.807 (0.86)	0.0307 (0.1)	0.126 (0.237)	0.00847 (0.0473)	0.341 (0.459)	0.0373 (0.112)	0.381 (0.498)	0.0798 (0.178)	0.366 (0.484)
MTG1	9 (3%)	280	0.0845 (0.185)	0.0152 (0.0653)	0.0366 (0.111)	0.0763 (0.175)	0.325 (0.444)	0.107 (0.215)	0.283 (0.403)	0.0548 (0.143)	0.453 (0.558)	0.0123 (0.0584)
C9ORF131	13 (4%)	276	0.0147 (0.0643)	0.0141 (0.0632)	0.433 (0.544)	0.0696 (0.165)	0.0644 (0.157)	0.0583 (0.148)	0.0651 (0.158)	0.00366 (0.0287)	0.466 (0.569)	0.754 (0.815)
STAT2	10 (3%)	279	0.0254 (0.0898)	0.0933 (0.197)	0.0918 (0.196)	0.0745 (0.172)	0.0142 (0.0634)	0.189 (0.306)	0.0567 (0.146)	0.00144 (0.0163)	0.454 (0.559)	0.627 (0.708)
BAX	6 (2%)	283	0.156 (0.271)	0.0135 (0.0615)	1 (1.00)	0.147 (0.262)	0.202 (0.321)	0.00026 (0.00565)	1 (1.00)	0.0312 (0.101)	0.3 (0.42)	0.563 (0.656)
ZNF48	10 (3%)	279	0.239 (0.36)	0.0135 (0.0613)	0.277 (0.398)	0.153 (0.267)	0.00196 (0.0197)	0.0439 (0.124)	0.0783 (0.177)	0.0544 (0.143)	0.668 (0.743)	0.626 (0.707)
CABP5	5 (2%)	284	0.401 (0.514)	0.0954 (0.2)	0.0779 (0.176)	0.00184 (0.0191)	0.0265 (0.0917)	0.0851 (0.186)	0.306 (0.426)	0.00253 (0.0231)	1 (1.00)	0.127 (0.238)
CDC25C	13 (4%)	276	0.0667 (0.16)	0.0753 (0.173)	0.0142 (0.0633)	0.0263 (0.0913)	0.0947 (0.199)	0.00621 (0.0387)	0.0561 (0.145)	0.12 (0.231)	0.872 (0.917)	0.458 (0.563)
GPR161	12 (4%)	277	0.28 (0.4)	0.655 (0.732)	0.178 (0.295)	0.518 (0.615)	0.0121 (0.0577)	0.0146 (0.0639)	0.0171 (0.0701)	0.0672 (0.161)	0.1 (0.206)	0.697 (0.768)
C13ORF33	7 (2%)	282	0.189 (0.306)	0.0151 (0.0653)	0.0158 (0.067)	0.278 (0.398)	0.0748 (0.172)	0.00031 (0.00624)	0.793 (0.849)	0.226 (0.345)	0.0788 (0.177)	0.628 (0.709)
DYRK4	9 (3%)	280	0.0967 (0.202)	0.00881 (0.0481)	0.598 (0.685)	0.209 (0.328)	0.137 (0.249)	0.028 (0.0943)	0.353 (0.47)	0.0785 (0.177)	0.0223 (0.0823)	0.314 (0.433)
FOXN3	8 (3%)	281	0.112 (0.222)	0.00145 (0.0163)	0.00317 (0.0263)	0.0512 (0.137)	0.221 (0.341)	0.0632 (0.155)	0.243 (0.363)	0.0269 (0.0922)	0.285 (0.405)	0.129 (0.24)
TNFRSF9	10 (3%)	279	0.0405 (0.119)	0.295 (0.415)	0.361 (0.479)	0.485 (0.586)	0.0203 (0.0776)	0.0184 (0.0731)	0.553 (0.648)	0.152 (0.267)	0.535 (0.631)	0.0641 (0.157)
CR1L	11 (4%)	278	0.22 (0.34)	0.349 (0.467)	0.0179 (0.0719)	0.175 (0.292)	0.661 (0.737)	0.0242 (0.0873)	0.0463 (0.128)	0.5 (0.599)	0.177 (0.294)	0.7 (0.77)
HOXD8	7 (2%)	282	0.252 (0.371)	0.352 (0.469)	0.0259 (0.0907)	0.372 (0.488)	0.0211 (0.0793)	0.0966 (0.202)	0.00953 (0.0498)	0.0951 (0.2)	0.301 (0.42)	0.473 (0.575)
DDX60	10 (3%)	279	0.0196 (0.0761)	0.074 (0.172)	0.0143 (0.0634)	0.516 (0.614)	0.0925 (0.196)	0.224 (0.343)	0.0553 (0.144)	0.0445 (0.125)	0.739 (0.804)	0.829 (0.878)
BEND3	12 (4%)	277	0.4 (0.514)	0.135 (0.246)	0.435 (0.545)	0.439 (0.547)	0.00818 (0.0464)	0.0675 (0.161)	0.00209 (0.0206)	0.00452 (0.0318)	0.176 (0.293)	0.111 (0.219)
ABCA6	13 (4%)	276	0.0229 (0.0844)	0.00082 (0.0116)	0.0743 (0.172)	0.201 (0.319)	0.138 (0.251)	0.0633 (0.156)	0.172 (0.289)	0.0314 (0.102)	0.75 (0.813)	0.898 (0.938)
SERPINB12	8 (3%)	281	0.739 (0.804)	0.651 (0.729)	0.169 (0.286)	0.0906 (0.194)	0.0976 (0.203)	0.0274 (0.093)	0.0268 (0.0922)	0.0268 (0.0922)	0.703 (0.772)	0.0598 (0.15)
GPR82	9 (3%)	280	0.73 (0.796)	0.0184 (0.0731)	0.0372 (0.112)	0.0332 (0.105)	0.112 (0.22)	0.0507 (0.136)	0.147 (0.262)	0.0786 (0.177)	0.513 (0.611)	0.752 (0.814)
ACVR1B	11 (4%)	278	0.079 (0.177)	0.103 (0.21)	0.435 (0.544)	0.0716 (0.168)	0.00238 (0.0222)	0.0985 (0.204)	0.0344 (0.107)	0.00325 (0.0267)	0.296 (0.416)	0.125 (0.236)
DNAJC18	13 (4%)	276	0.00946 (0.0497)	0.00106 (0.0134)	0.393 (0.507)	0.0757 (0.174)	0.0599 (0.151)	0.0511 (0.137)	0.316 (0.434)	0.729 (0.795)	0.0184 (0.0731)	0.111 (0.22)
DLGAP3	16 (6%)	273	0.229 (0.348)	0.00614 (0.0384)	0.0328 (0.104)	0.161 (0.277)	0.13 (0.24)	0.399 (0.513)	0.0522 (0.139)	0.00461 (0.032)	0.271 (0.391)	0.217 (0.337)
ALG10	11 (4%)	278	0.361 (0.479)	0.015 (0.065)	0.183 (0.299)	0.175 (0.292)	0.916 (0.954)	0.0171 (0.0701)	0.792 (0.848)	0.046 (0.128)	0.732 (0.798)	0.873 (0.918)
TRIP10	8 (3%)	281	0.189 (0.307)	0.0299 (0.0983)	0.264 (0.386)	0.054 (0.142)	0.148 (0.262)	0.242 (0.363)	0.0265 (0.0917)	0.0106 (0.053)	0.21 (0.329)	0.314 (0.433)
RAB14	8 (3%)	281	0.511 (0.61)	0.23 (0.349)	0.0362 (0.11)	0.00133 (0.0155)	0.694 (0.767)	0.179 (0.296)	0.244 (0.365)	0.0344 (0.107)	0.497 (0.596)	0.12 (0.231)
CRYGD	12 (4%)	277	0.314 (0.433)	0.0126 (0.0593)	0.0951 (0.2)	0.00339 (0.0273)	0.192 (0.31)	0.00527 (0.0353)	0.649 (0.727)	0.0629 (0.155)	0.602 (0.687)	0.882 (0.925)
NEXN	8 (3%)	281	0.274 (0.394)	0.161 (0.277)	0.0096 (0.0501)	0.102 (0.209)	0.021 (0.0793)	0.45 (0.556)	0.00446 (0.0315)	0.116 (0.226)	0.584 (0.672)	0.442 (0.55)
PLEKHO1	7 (2%)	282	0.25 (0.37)	0.188 (0.305)	0.0264 (0.0916)	0.0144 (0.0636)	0.328 (0.446)	0.159 (0.274)	0.00931 (0.0496)	0.0899 (0.193)	0.48 (0.581)	0.636 (0.714)
HTR1E	9 (3%)	280	0.109 (0.217)	0.0464 (0.128)	0.0916 (0.195)	0.153 (0.267)	0.0944 (0.199)	0.602 (0.687)	0.036 (0.11)	0.0497 (0.134)	0.401 (0.515)	0.269 (0.389)
BMPR1B	7 (2%)	282	0.0361 (0.11)	0.0464 (0.128)	1 (1.00)	0.926 (0.962)	0.365 (0.483)	0.152 (0.266)	0.432 (0.543)	0.035 (0.108)	0.545 (0.64)	0.564 (0.657)
NFE2L1	9 (3%)	280	0.489 (0.59)	0.654 (0.731)	0.0864 (0.188)	0.0941 (0.199)	0.0192 (0.0749)	0.133 (0.244)	0.146 (0.261)	0.00661 (0.04)	0.523 (0.621)	0.043 (0.123)
IPO11	12 (4%)	277	0.28 (0.4)	0.0299 (0.0983)	0.107 (0.215)	0.0789 (0.177)	0.148 (0.262)	0.515 (0.612)	0.0171 (0.0701)	0.0162 (0.0679)	0.826 (0.875)	0.0721 (0.169)
MAMSTR	4 (1%)	285	0.471 (0.574)	0.695 (0.767)	0.00921 (0.0495)	0.0184 (0.0731)	0.362 (0.48)	0.0387 (0.115)	0.119 (0.23)	0.0626 (0.155)	0.335 (0.452)	0.129 (0.24)
BRWD1	21 (7%)	268	0.063 (0.155)	0.411 (0.525)	0.661 (0.737)	0.159 (0.275)	0.0479 (0.131)	0.33 (0.448)	0.0318 (0.102)	0.0638 (0.156)	0.139 (0.251)	0.049 (0.133)
PFKP	13 (4%)	276	0.174 (0.292)	0.0795 (0.178)	0.00112 (0.014)	0.0692 (0.164)	0.54 (0.636)	0.0488 (0.132)	0.0657 (0.159)	0.0175 (0.071)	0.264 (0.385)	0.44 (0.548)
KCNH4	6 (2%)	283	0.608 (0.691)	0.23 (0.349)	0.119 (0.23)	0.0177 (0.0715)	0.0973 (0.203)	0.0978 (0.203)	0.111 (0.219)	0.035 (0.108)	0.424 (0.536)	0.00479 (0.0329)
TMEM63A	11 (4%)	278	0.0701 (0.166)	0.0366 (0.111)	0.0969 (0.202)	0.255 (0.375)	0.0653 (0.158)	0.00243 (0.0224)	0.0359 (0.11)	0.0712 (0.167)	0.257 (0.378)	0.79 (0.846)
MASTL	11 (4%)	278	0.0828 (0.182)	0.0477 (0.131)	0.434 (0.544)	0.132 (0.242)	0.003 (0.0255)	0.125 (0.235)	0.0337 (0.106)	0.18 (0.296)	0.211 (0.33)	0.491 (0.591)
KBTBD6	13 (4%)	276	0.00877 (0.048)	0.276 (0.397)	0.0738 (0.171)	0.00879 (0.0481)	0.0735 (0.171)	0.00517 (0.0348)	0.0646 (0.157)	0.122 (0.232)	0.935 (0.97)	0.119 (0.23)
JHDM1D	10 (3%)	279	0.157 (0.272)	0.00753 (0.0437)	0.0616 (0.153)	0.22 (0.34)	0.234 (0.353)	0.362 (0.48)	0.0175 (0.0711)	0.00102 (0.0132)	0.265 (0.386)	0.125 (0.235)
TRUB1	9 (3%)	280	0.212 (0.331)	0.0318 (0.102)	0.00947 (0.0497)	0.078 (0.176)	0.00754 (0.0437)	0.268 (0.388)	0.144 (0.258)	0.125 (0.235)	0.216 (0.335)	0.124 (0.234)
RPGR	8 (3%)	281	0.132 (0.242)	0.00858 (0.0475)	0.0327 (0.104)	0.0534 (0.141)	0.0662 (0.159)	0.001 (0.013)	0.727 (0.794)	0.106 (0.213)	0.658 (0.734)	0.811 (0.864)
EPB49	8 (3%)	281	0.223 (0.342)	0.349 (0.467)	0.307 (0.427)	0.0908 (0.194)	0.0234 (0.0857)	0.323 (0.441)	0.0629 (0.155)	0.0192 (0.0749)	0.606 (0.69)	0.042 (0.121)
GRK4	4 (1%)	285	0.632 (0.712)	0.0371 (0.112)			0.101 (0.207)	0.0673 (0.161)	0.122 (0.232)	0.00133 (0.0155)	0.657 (0.734)	0.001 (0.013)
B3GNT5	10 (3%)	279	0.112 (0.221)	0.418 (0.532)	0.0914 (0.195)	0.518 (0.615)	0.233 (0.352)	0.0212 (0.0796)	0.0114 (0.0556)	0.0217 (0.0809)	0.355 (0.472)	0.123 (0.234)
ALDH2	9 (3%)	280	0.15 (0.264)	0.0627 (0.155)	0.042 (0.121)	0.0456 (0.127)	0.346 (0.464)	0.0269 (0.0922)	0.118 (0.228)	0.156 (0.271)	0.894 (0.935)	0.871 (0.917)
C7ORF49	7 (2%)	282	0.171 (0.288)	0.00849 (0.0473)	0.398 (0.512)	0.302 (0.421)	0.512 (0.61)	0.0395 (0.117)	0.436 (0.545)	0.0965 (0.202)	0.0275 (0.0932)	0.635 (0.713)
BRSK1	12 (4%)	277	0.344 (0.462)	0.305 (0.425)	0.0132 (0.0609)	0.022 (0.0819)	0.139 (0.251)	0.328 (0.446)	0.0169 (0.0696)	0.132 (0.242)	0.752 (0.814)	0.664 (0.739)
GPR141	9 (3%)	280	0.152 (0.266)	0.0624 (0.154)	0.102 (0.209)	0.0122 (0.0579)	0.243 (0.363)	0.0106 (0.053)	0.0259 (0.0906)	0.105 (0.212)	0.552 (0.647)	0.873 (0.918)
SMARCB1	11 (4%)	278	0.0587 (0.149)	0.0446 (0.125)	0.178 (0.295)	0.27 (0.39)	0.0495 (0.134)	0.173 (0.291)	0.791 (0.847)	0.00368 (0.0287)	0.884 (0.926)	0.371 (0.487)
CD58	6 (2%)	283	0.22 (0.34)	0.348 (0.466)	0.0774 (0.176)	0.0484 (0.132)	0.00195 (0.0197)	0.527 (0.623)	0.02 (0.0772)	0.18 (0.296)	0.172 (0.289)	0.293 (0.413)
EXOSC8	5 (2%)	284	0.512 (0.61)	0.228 (0.347)	0.118 (0.228)	0.0137 (0.062)	0.0437 (0.124)	0.0089 (0.0484)	0.0579 (0.147)	0.277 (0.398)	0.0876 (0.189)	0.568 (0.659)
SUCLG2	5 (2%)	284	0.297 (0.417)	0.278 (0.399)	0.0765 (0.175)	0.017 (0.0699)	0.00855 (0.0475)	0.626 (0.708)	0.0575 (0.147)	0.0801 (0.179)	0.436 (0.545)	0.0422 (0.121)
CSNK1G3	7 (2%)	282	0.177 (0.294)	0.188 (0.306)	0.0678 (0.162)	0.0039 (0.0296)	0.0427 (0.122)	0.425 (0.536)	0.436 (0.545)	0.00981 (0.0507)	0.751 (0.814)	0.119 (0.23)
PIAS3	5 (2%)	284	0.0175 (0.0711)	0.0166 (0.069)	0.398 (0.512)	0.449 (0.556)	0.0247 (0.0882)	0.371 (0.487)	0.0556 (0.145)	0.277 (0.398)
PIWIL2	6 (2%)	283	0.177 (0.294)	0.109 (0.217)	0.0668 (0.161)	0.116 (0.226)	0.0431 (0.123)	0.354 (0.471)	0.0204 (0.0778)	0.00238 (0.0222)	0.178 (0.295)	0.0593 (0.15)
TMEM79	6 (2%)	283	0.176 (0.294)	0.0141 (0.0631)	0.166 (0.284)	0.0581 (0.148)	0.248 (0.367)	0.764 (0.824)	0.168 (0.286)	0.028 (0.094)	0.0701 (0.166)	0.0435 (0.124)
EAF2	7 (2%)	282	0.036 (0.11)	0.0132 (0.0609)	0.45 (0.556)	0.748 (0.811)	0.23 (0.349)	0.0764 (0.175)	0.0786 (0.177)	0.00697 (0.0415)	0.894 (0.934)	0.198 (0.316)
NT5DC1	6 (2%)	283	0.222 (0.342)	0.0208 (0.0789)	0.167 (0.284)	0.117 (0.228)	0.0362 (0.11)	0.893 (0.934)	0.111 (0.219)	0.0355 (0.109)	0.135 (0.246)	0.0914 (0.195)
BCKDHA	12 (4%)	277	0.439 (0.547)	0.156 (0.271)	0.054 (0.142)	0.0257 (0.0902)	0.277 (0.398)	0.554 (0.649)	0.0645 (0.157)	0.004 (0.0297)	0.263 (0.385)	0.0238 (0.0866)
LARP1	10 (3%)	279	0.237 (0.357)	0.0146 (0.0641)	0.0436 (0.124)	0.0907 (0.194)	0.143 (0.258)	0.438 (0.547)	0.00089 (0.0122)	0.108 (0.216)	0.426 (0.536)	0.264 (0.385)
FOXJ1	5 (2%)	284	0.297 (0.417)	0.0973 (0.203)	0.207 (0.326)	0.055 (0.144)	0.0548 (0.143)	0.00546 (0.0359)	0.0561 (0.145)	0.0105 (0.053)	0.522 (0.619)	0.0442 (0.124)
IDE	9 (3%)	280	0.114 (0.224)	0.508 (0.606)	0.00931 (0.0496)	0.00809 (0.0462)	0.143 (0.257)	0.0469 (0.129)	0.145 (0.26)	0.376 (0.492)	0.227 (0.346)	0.119 (0.23)
DYRK1A	9 (3%)	280	0.194 (0.311)	0.162 (0.279)	0.00558 (0.0361)	0.0897 (0.193)	0.282 (0.402)	0.265 (0.386)	0.026 (0.0908)	0.04 (0.118)	0.886 (0.928)	0.698 (0.769)
MRPL2	6 (2%)	283	0.15 (0.265)	0.28 (0.401)	0.24 (0.36)	0.0892 (0.192)	0.0147 (0.0643)	0.484 (0.585)	0.0199 (0.0768)	0.0283 (0.0945)	0.655 (0.732)	0.195 (0.313)
SLC4A3	15 (5%)	274	0.0517 (0.138)	0.0525 (0.139)	0.276 (0.396)	0.281 (0.401)	0.105 (0.213)	7e-05 (0.00267)	0.0319 (0.102)	0.0223 (0.0825)	0.113 (0.223)	0.111 (0.22)
PIK3R1	10 (3%)	279	0.766 (0.825)	0.239 (0.36)	0.179 (0.295)	0.0131 (0.0606)	0.0766 (0.175)	0.176 (0.293)	0.00849 (0.0473)	0.0133 (0.0609)	0.0669 (0.161)	0.0922 (0.196)
CDC5L	15 (5%)	274	0.145 (0.26)	0.0144 (0.0637)	0.0143 (0.0634)	0.0712 (0.167)	0.102 (0.209)	0.0722 (0.169)	0.0682 (0.163)	0.00028 (0.00585)	0.524 (0.621)	0.602 (0.687)
NAA16	8 (3%)	281	0.236 (0.356)	0.347 (0.465)	0.00987 (0.0509)	0.0646 (0.157)	0.0824 (0.182)	0.197 (0.314)	0.0274 (0.093)	0.0135 (0.0614)	0.211 (0.33)	0.44 (0.548)
TXLNG	7 (2%)	282	0.181 (0.297)	0.0603 (0.151)	0.00917 (0.0494)	0.00432 (0.0311)	0.352 (0.469)	0.253 (0.373)	0.0483 (0.132)	0.0951 (0.2)	0.204 (0.322)	0.29 (0.41)
CORIN	10 (3%)	279	0.729 (0.796)	0.078 (0.176)	0.0971 (0.203)	0.00711 (0.0421)	0.119 (0.23)	0.0356 (0.109)	0.0785 (0.177)	0.0004 (0.00721)	0.844 (0.892)	0.227 (0.346)
DGKD	6 (2%)	283	0.607 (0.691)	0.42 (0.533)	0.449 (0.556)	0.524 (0.621)	0.0255 (0.0898)	0.139 (0.251)	0.672 (0.746)	0.0188 (0.0738)	0.215 (0.334)	0.0406 (0.119)
USP13	11 (4%)	278	0.277 (0.398)	0.0481 (0.131)	0.0334 (0.106)	0.485 (0.586)	0.0628 (0.155)	0.00928 (0.0496)	0.13 (0.24)	0.221 (0.341)	0.103 (0.21)	0.155 (0.27)
C3	25 (9%)	264	0.026 (0.0908)	0.0565 (0.146)	0.00421 (0.0305)	0.138 (0.251)	0.0746 (0.172)	0.194 (0.312)	0.102 (0.208)	0.153 (0.267)	0.0488 (0.132)	0.295 (0.415)
ELL2	12 (4%)	277	0.133 (0.243)	0.158 (0.273)	0.00088 (0.0121)	0.00853 (0.0475)	0.059 (0.149)	0.0259 (0.0906)	0.0647 (0.157)	0.301 (0.421)	0.813 (0.865)	0.456 (0.56)
OSBPL2	7 (2%)	282	0.758 (0.818)	0.581 (0.669)	0.00537 (0.0357)	0.0001 (0.00324)	0.874 (0.918)	0.0992 (0.205)	0.145 (0.259)	0.00194 (0.0196)	0.102 (0.209)	0.193 (0.31)
IQSEC2	12 (4%)	277	0.104 (0.211)	0.0133 (0.0609)	0.0536 (0.141)	0.0571 (0.146)	0.122 (0.232)	0.658 (0.734)	0.0273 (0.0927)	0.0164 (0.0687)	0.573 (0.663)	0.184 (0.301)
HS6ST2	7 (2%)	282	0.252 (0.372)	0.0366 (0.111)	0.451 (0.556)	0.676 (0.75)	0.0925 (0.196)	0.0871 (0.189)	0.0786 (0.177)	0.0357 (0.109)	0.0278 (0.0939)	0.195 (0.313)
CLIP1	15 (5%)	274	0.623 (0.705)	0.0339 (0.107)	0.214 (0.333)	0.0264 (0.0916)	0.271 (0.391)	0.0108 (0.0537)	0.405 (0.518)	0.205 (0.324)	0.741 (0.805)	0.693 (0.766)
SLA	4 (1%)	285	0.474 (0.575)	0.0373 (0.112)			0.0258 (0.0906)	0.0876 (0.189)	0.359 (0.477)	0.00129 (0.0152)	0.187 (0.304)	0.193 (0.311)
KYNU	10 (3%)	279	0.13 (0.24)	0.595 (0.682)	0.0351 (0.109)	0.267 (0.388)	0.00731 (0.043)	0.0171 (0.0701)	0.0772 (0.176)	0.0538 (0.142)	0.562 (0.655)	0.443 (0.551)
OR4C16	13 (4%)	276	0.146 (0.26)	0.17 (0.288)	0.741 (0.805)	0.467 (0.57)	0.00391 (0.0296)	0.0641 (0.157)	0.00768 (0.0444)	0.0327 (0.104)	0.17 (0.287)	0.456 (0.561)
RHOA	16 (6%)	273	0.125 (0.236)	0.435 (0.544)	1 (1.00)	0.717 (0.784)	0.336 (0.453)	0.98 (1.00)	0.0435 (0.124)	0.0892 (0.192)	0.049 (0.133)	0.268 (0.388)
POLM	10 (3%)	279	0.121 (0.231)	0.103 (0.21)	0.0742 (0.172)	0.00478 (0.0329)	0.382 (0.498)	0.134 (0.245)	0.0774 (0.176)	0.00345 (0.0275)	0.234 (0.353)	0.311 (0.43)
AOC3	13 (4%)	276	0.886 (0.928)	0.101 (0.208)	0.581 (0.669)	0.0613 (0.153)	0.248 (0.368)	0.938 (0.972)	0.314 (0.433)	0.0214 (0.0802)	0.439 (0.547)	0.0467 (0.129)
ADAM28	14 (5%)	275	0.226 (0.344)	0.00736 (0.0431)	0.287 (0.408)	0.0699 (0.165)	0.323 (0.442)	0.0822 (0.182)	0.023 (0.0846)	0.126 (0.236)	0.0993 (0.205)	0.367 (0.484)
PRSS36	11 (4%)	278	0.07 (0.165)	0.0203 (0.0776)	0.266 (0.386)	0.24 (0.36)	0.0798 (0.178)	0.174 (0.292)	0.0684 (0.163)	0.0122 (0.058)	0.983 (1.00)	0.375 (0.491)
IRF2	14 (5%)	275	0.467 (0.57)	0.498 (0.598)	0.0691 (0.164)	0.323 (0.442)	0.35 (0.467)	0.563 (0.656)	0.0216 (0.0808)	0.0277 (0.0938)	0.311 (0.43)	0.789 (0.846)
SPTY2D1	15 (5%)	274	0.677 (0.752)	0.118 (0.229)	0.164 (0.281)	0.231 (0.35)	0.0123 (0.0582)	0.00538 (0.0357)	0.195 (0.313)	0.208 (0.326)	0.131 (0.241)	0.1 (0.207)
PRRG3	8 (3%)	281	0.059 (0.149)	0.0887 (0.191)	0.0877 (0.19)	0.0345 (0.107)	0.101 (0.207)	0.349 (0.467)	0.00417 (0.0303)	0.0685 (0.163)	0.302 (0.421)	0.473 (0.575)
RALGAPB	18 (6%)	271	0.0732 (0.17)	0.147 (0.262)	0.0949 (0.2)	0.00028 (0.00585)	0.579 (0.668)	0.439 (0.547)	0.212 (0.332)	0.0196 (0.0761)	0.578 (0.667)	0.694 (0.766)
ADAM30	14 (5%)	275	0.69 (0.763)	0.597 (0.684)	0.331 (0.448)	0.0854 (0.186)	0.931 (0.967)	0.264 (0.385)	0.0222 (0.082)	0.0101 (0.0515)	0.535 (0.631)	0.265 (0.386)
RBM43	9 (3%)	280	0.851 (0.899)	0.572 (0.662)	0.103 (0.21)	0.125 (0.236)	0.284 (0.404)	0.00557 (0.0361)	0.0368 (0.111)	0.412 (0.525)	0.648 (0.726)	0.441 (0.549)
PMEPA1	6 (2%)	283	0.175 (0.292)	0.413 (0.526)	0.00946 (0.0497)	0.266 (0.386)	0.187 (0.305)	0.165 (0.283)	0.0206 (0.0783)	0.12 (0.231)	0.48 (0.581)	0.633 (0.713)
SNAPC1	7 (2%)	282	0.19 (0.308)	0.0147 (0.0643)	0.399 (0.512)	0.821 (0.871)	0.166 (0.284)	0.527 (0.623)	0.0476 (0.131)	0.0951 (0.2)	0.217 (0.337)	0.313 (0.432)
FASTKD1	11 (4%)	278	0.107 (0.215)	0.26 (0.38)	0.507 (0.606)	0.395 (0.51)	0.166 (0.284)	0.526 (0.622)	0.0197 (0.0763)	0.196 (0.314)	0.158 (0.273)	0.0242 (0.0873)
SLC27A3	9 (3%)	280	0.0579 (0.147)	0.188 (0.305)	0.401 (0.515)	0.18 (0.297)	0.311 (0.43)	0.124 (0.235)	0.0258 (0.0906)	0.00649 (0.0396)	0.41 (0.523)	0.0922 (0.196)
ISG20L2	7 (2%)	282	0.11 (0.218)	0.506 (0.605)	0.0667 (0.16)	0.184 (0.301)	0.042 (0.121)	0.46 (0.564)	0.00962 (0.0501)	0.0895 (0.193)	0.587 (0.674)	0.266 (0.387)
C1R	5 (2%)	284	0.335 (0.452)	0.132 (0.242)	0.448 (0.556)	0.00451 (0.0317)	0.0972 (0.203)	0.00638 (0.0393)	0.309 (0.428)	0.46 (0.564)	0.939 (0.973)	0.385 (0.5)
FGGY	9 (3%)	280	0.646 (0.724)	0.419 (0.533)	0.057 (0.146)	0.138 (0.251)	0.212 (0.331)	0.259 (0.38)	0.0354 (0.109)	0.0442 (0.124)	0.626 (0.707)	0.313 (0.432)
GATA3	16 (6%)	273	0.0847 (0.185)	0.0854 (0.186)	0.0159 (0.067)	0.0704 (0.166)	0.107 (0.215)	0.186 (0.303)	0.0383 (0.114)	0.175 (0.292)	0.819 (0.87)	1 (1.00)
ABCB6	8 (3%)	281	0.0566 (0.146)	0.188 (0.305)	0.00104 (0.0133)	0.15 (0.264)	0.0983 (0.204)	0.471 (0.574)	0.061 (0.152)	0.0272 (0.0925)	0.147 (0.261)	0.315 (0.433)
KIAA0240	12 (4%)	277	0.107 (0.215)	0.583 (0.671)	0.00342 (0.0274)	0.127 (0.239)	0.0947 (0.199)	0.00878 (0.0481)	0.258 (0.378)	0.492 (0.592)	0.464 (0.568)	0.697 (0.768)
CDKL3	7 (2%)	282	0.25 (0.37)	0.368 (0.485)	0.00936 (0.0496)	0.278 (0.398)	0.0143 (0.0634)	0.351 (0.469)	0.0796 (0.178)	0.0931 (0.197)	0.418 (0.532)	0.473 (0.575)
GLIPR1L2	10 (3%)	279	0.263 (0.385)	0.376 (0.491)	0.279 (0.399)	0.0855 (0.186)	0.0142 (0.0633)	0.253 (0.373)	0.0573 (0.147)	0.0287 (0.0953)	0.874 (0.918)	0.0735 (0.171)
ZDHHC7	6 (2%)	283	0.177 (0.294)	0.0128 (0.0598)	0.076 (0.174)	0.614 (0.697)	0.0222 (0.0822)	0.0801 (0.179)	0.17 (0.287)	0.115 (0.225)	0.149 (0.264)	0.297 (0.416)
FAM116A	6 (2%)	283	0.108 (0.216)	0.379 (0.495)	0.172 (0.289)	0.023 (0.0846)	0.565 (0.657)	0.484 (0.585)	0.169 (0.286)	0.0311 (0.101)	0.153 (0.267)	0.128 (0.24)
PHACTR2	13 (4%)	276	0.57 (0.661)	0.00218 (0.0212)	0.397 (0.512)	0.33 (0.448)	0.2 (0.318)	0.12 (0.231)	0.716 (0.784)	0.0244 (0.0878)	0.127 (0.239)	0.505 (0.604)
PAPD4	8 (3%)	281	0.01 (0.0514)	0.109 (0.217)	0.155 (0.27)	0.179 (0.296)	0.0875 (0.189)	0.0164 (0.0687)	0.727 (0.794)	0.215 (0.335)	0.824 (0.874)	1 (1.00)
YBX2	4 (1%)	285	0.601 (0.686)	0.151 (0.265)	0.845 (0.894)	0.332 (0.449)	0.244 (0.364)	0.478 (0.579)	0.12 (0.23)	0.00137 (0.0157)	0.0558 (0.145)	0.00571 (0.0366)
SH3KBP1	13 (4%)	276	0.0667 (0.16)	0.242 (0.362)	0.403 (0.517)	0.105 (0.212)	0.0479 (0.131)	0.116 (0.226)	0.0148 (0.0644)	0.0717 (0.168)	0.384 (0.5)	0.225 (0.343)
IL2RG	6 (2%)	283	0.176 (0.294)	0.0133 (0.061)	0.0149 (0.0648)	0.0736 (0.171)	0.163 (0.28)	0.795 (0.849)	0.17 (0.288)	0.223 (0.342)	0.742 (0.806)	1 (1.00)
XK	5 (2%)	284	0.7 (0.77)	1 (1.00)	0.00902 (0.0489)	0.0176 (0.0712)	0.874 (0.918)	0.887 (0.929)	0.852 (0.9)	0.648 (0.726)	0.939 (0.973)	0.383 (0.499)
INTS12	6 (2%)	283	0.407 (0.52)	0.28 (0.4)	0.0837 (0.184)	0.036 (0.11)	0.486 (0.587)	0.205 (0.323)	0.171 (0.288)	0.0346 (0.108)	0.483 (0.584)	0.193 (0.311)
AQP8	11 (4%)	278	0.026 (0.0909)	0.0685 (0.163)	0.0047 (0.0324)	0.766 (0.825)	0.0865 (0.188)	0.0784 (0.177)	0.0685 (0.163)	0.137 (0.249)	0.191 (0.309)	0.792 (0.848)
ACP1	5 (2%)	284	0.298 (0.417)	0.0369 (0.111)	0.421 (0.534)	0.264 (0.385)	0.308 (0.427)	0.566 (0.657)	0.203 (0.322)	0.136 (0.248)	0.0976 (0.203)	0.042 (0.121)
NEK7	4 (1%)	285	0.474 (0.575)	0.856 (0.904)	0.0768 (0.175)	0.149 (0.264)	0.0179 (0.072)	0.398 (0.512)	0.121 (0.231)	0.43 (0.54)	0.339 (0.457)	0.00574 (0.0367)
NAA25	14 (5%)	275	0.623 (0.705)	0.0164 (0.0688)	0.942 (0.975)	0.707 (0.776)	0.946 (0.978)	0.0251 (0.0893)	1 (1.00)	0.866 (0.913)	0.929 (0.965)	1 (1.00)
RING1	8 (3%)	281	0.434 (0.544)	0.371 (0.487)	0.821 (0.871)	0.15 (0.264)	0.0563 (0.146)	0.0064 (0.0393)	0.0273 (0.0927)	0.119 (0.23)	0.0602 (0.151)	0.229 (0.348)
SAFB	9 (3%)	280	0.239 (0.359)	0.507 (0.606)	0.177 (0.294)	0.0235 (0.0857)	0.0898 (0.193)	0.0183 (0.073)	0.631 (0.711)	0.0871 (0.189)	0.652 (0.73)	0.627 (0.708)
CTNNA1	13 (4%)	276	0.108 (0.216)	0.0831 (0.183)	0.487 (0.587)	0.369 (0.486)	0.0278 (0.0939)	0.0172 (0.0701)	0.362 (0.48)	0.0714 (0.167)	0.562 (0.655)	0.425 (0.536)
PLA2G15	9 (3%)	280	0.267 (0.388)	0.508 (0.607)	0.0428 (0.122)	0.0117 (0.0565)	0.433 (0.544)	0.0547 (0.143)	0.146 (0.26)	0.377 (0.493)	0.983 (1.00)	0.63 (0.71)
AGBL5	12 (4%)	277	0.557 (0.652)	0.0668 (0.16)	0.0591 (0.149)	0.24 (0.36)	0.316 (0.434)	0.0143 (0.0634)	0.0433 (0.123)	0.149 (0.264)	0.654 (0.731)	0.801 (0.853)
PLAG1	11 (4%)	278	0.0875 (0.189)	0.0758 (0.174)	0.705 (0.774)	0.449 (0.556)	0.17 (0.288)	0.557 (0.651)	0.00518 (0.0348)	0.0143 (0.0635)	0.914 (0.952)	0.222 (0.342)
CSF3R	12 (4%)	277	0.0568 (0.146)	0.00093 (0.0124)	0.18 (0.296)	0.396 (0.51)	0.139 (0.252)	0.131 (0.241)	0.0273 (0.0929)	0.064 (0.156)	0.546 (0.641)	0.456 (0.561)
ERBB4	39 (13%)	250	0.437 (0.546)	0.0373 (0.112)	0.0851 (0.186)	0.138 (0.251)	0.0502 (0.135)	0.33 (0.448)	0.14 (0.253)	0.034 (0.107)	0.511 (0.609)	0.198 (0.316)
CREM	4 (1%)	285	0.599 (0.685)	0.0975 (0.203)	0.312 (0.431)	0.0216 (0.0807)	0.115 (0.225)	0.796 (0.85)	0.121 (0.231)	0.00146 (0.0164)	0.0844 (0.185)	0.191 (0.309)
ART1	7 (2%)	282	0.492 (0.592)	0.421 (0.534)	0.167 (0.285)	0.059 (0.149)	0.0636 (0.156)	0.207 (0.326)	0.0487 (0.132)	0.0107 (0.0534)	0.422 (0.534)	0.294 (0.414)
SOHLH2	14 (5%)	275	0.526 (0.623)	0.239 (0.359)	0.57 (0.661)	0.569 (0.66)	0.733 (0.799)	0.581 (0.669)	0.828 (0.877)	0.00443 (0.0315)	0.323 (0.442)	0.0245 (0.088)
CA2	5 (2%)	284	0.296 (0.416)	0.147 (0.262)	0.166 (0.284)	0.00934 (0.0496)	0.202 (0.321)	0.0687 (0.163)	0.199 (0.318)	0.0808 (0.18)	0.492 (0.592)	0.00484 (0.0331)
FKBP9	6 (2%)	283	0.105 (0.213)	0.0609 (0.152)	0.203 (0.322)	0.155 (0.27)	0.169 (0.287)	0.00898 (0.0488)	1 (1.00)	0.0316 (0.102)	0.522 (0.619)	1 (1.00)
GPATCH2	7 (2%)	282	0.179 (0.296)	0.186 (0.304)	0.115 (0.225)	0.00405 (0.03)	0.101 (0.207)	0.231 (0.35)	0.0764 (0.175)	0.00928 (0.0496)	0.351 (0.469)	1 (1.00)
SGOL2	11 (4%)	278	0.0782 (0.176)	0.034 (0.107)	0.0591 (0.149)	0.136 (0.248)	0.0343 (0.107)	0.506 (0.605)	0.213 (0.332)	0.183 (0.299)	0.327 (0.446)	0.792 (0.848)
SGK3	5 (2%)	284	0.512 (0.61)	0.15 (0.264)	0.00262 (0.0236)	0.0816 (0.181)	0.948 (0.981)	0.0339 (0.107)	0.305 (0.425)	0.275 (0.396)
STX2	6 (2%)	283	0.439 (0.547)	0.0205 (0.0781)	0.0431 (0.123)	0.0823 (0.182)	0.697 (0.768)	0.615 (0.698)	0.667 (0.742)	0.224 (0.343)	0.735 (0.8)	0.63 (0.71)
KIAA1804	8 (3%)	281	0.732 (0.798)	0.108 (0.216)	0.822 (0.872)	0.555 (0.649)	1 (1.00)	0.927 (0.963)	0.0262 (0.0911)	0.0416 (0.121)	0.294 (0.414)	0.473 (0.575)
C2ORF42	14 (5%)	275	0.176 (0.294)	0.0957 (0.201)	0.0531 (0.14)	0.0699 (0.165)	0.137 (0.249)	0.00164 (0.0177)	0.0133 (0.0609)	0.0791 (0.177)	0.336 (0.453)	0.698 (0.769)
C7ORF58	15 (5%)	274	0.584 (0.672)	0.00298 (0.0255)	0.215 (0.335)	0.0277 (0.0938)	0.0501 (0.135)	0.0527 (0.139)	0.208 (0.327)	0.102 (0.209)	0.744 (0.808)	0.115 (0.225)
CTSD	7 (2%)	282	0.495 (0.594)	0.236 (0.356)	0.285 (0.405)	0.279 (0.399)	0.127 (0.238)	0.201 (0.32)	0.617 (0.7)	0.00187 (0.0192)	0.486 (0.586)	0.0366 (0.111)
AVPR1A	12 (4%)	277	0.11 (0.219)	0.233 (0.353)	0.0001 (0.00324)	0.0362 (0.11)	0.061 (0.152)	0.125 (0.236)	0.131 (0.241)	0.0653 (0.158)	0.826 (0.876)	0.424 (0.536)
NDST2	8 (3%)	281	0.234 (0.353)	0.349 (0.467)	0.115 (0.225)	0.0992 (0.205)	0.00306 (0.0258)	0.00825 (0.0467)	0.0723 (0.169)	0.118 (0.229)	0.385 (0.5)	0.314 (0.433)
CEP120	10 (3%)	279	0.0425 (0.122)	0.125 (0.235)	0.156 (0.271)	0.179 (0.296)	0.159 (0.275)	0.102 (0.208)	0.0779 (0.176)	0.0448 (0.125)	0.454 (0.559)	0.696 (0.768)
RDX	7 (2%)	282	0.734 (0.8)	0.219 (0.338)	0.00925 (0.0496)	0.0372 (0.112)	0.439 (0.547)	0.165 (0.282)	0.615 (0.698)	0.248 (0.368)	0.447 (0.555)	0.474 (0.575)
TNS4	12 (4%)	277	0.134 (0.245)	0.497 (0.597)	0.0362 (0.11)	0.256 (0.376)	0.0676 (0.162)	0.0237 (0.0865)	0.281 (0.401)	0.599 (0.685)	0.813 (0.865)	0.715 (0.783)
ZBTB49	7 (2%)	282	0.787 (0.845)	0.487 (0.588)	0.287 (0.408)	0.461 (0.565)	0.178 (0.295)	0.203 (0.322)	0.795 (0.849)	0.0494 (0.134)	0.955 (0.987)	0.0353 (0.109)
NOB1	7 (2%)	282	0.17 (0.287)	0.0979 (0.204)	0.398 (0.512)	0.331 (0.449)	0.163 (0.28)	0.45 (0.556)	0.0495 (0.134)	0.268 (0.388)	0.0282 (0.0945)	0.195 (0.313)
ARHGEF17	17 (6%)	272	0.00328 (0.0269)	0.087 (0.189)	0.108 (0.216)	0.212 (0.331)	0.0042 (0.0305)	0.0511 (0.137)	0.221 (0.341)	0.148 (0.262)	0.213 (0.332)	0.217 (0.337)
C10ORF120	5 (2%)	284	1 (1.00)	0.859 (0.907)	0.077 (0.175)	0.0181 (0.0726)			0.202 (0.321)	0.00398 (0.0297)
SLFN12	7 (2%)	282	0.493 (0.593)	0.506 (0.605)	0.103 (0.209)	0.183 (0.3)	0.105 (0.213)	0.187 (0.305)	0.079 (0.177)	0.00846 (0.0473)	0.869 (0.915)	0.0456 (0.127)
TUBE1	7 (2%)	282	0.25 (0.37)	0.147 (0.262)	0.00553 (0.0361)	0.0515 (0.137)	0.0978 (0.203)	0.0946 (0.199)	0.435 (0.544)	0.0114 (0.0556)	0.111 (0.22)	0.292 (0.412)
NUPL2	7 (2%)	282	0.577 (0.667)	0.269 (0.389)	0.00078 (0.0112)	0.0345 (0.107)	0.0998 (0.206)	0.168 (0.286)	0.0795 (0.178)	0.109 (0.217)	0.175 (0.292)	0.471 (0.574)
ZNF367	4 (1%)	285	0.334 (0.451)	0.15 (0.265)	0.4 (0.514)	0.0485 (0.132)	0.306 (0.426)	0.0337 (0.106)	0.56 (0.654)	0.318 (0.436)	0.282 (0.402)	0.383 (0.499)
MUT	6 (2%)	283	0.106 (0.214)	0.06 (0.151)	0.00911 (0.0492)	0.0589 (0.149)	0.0973 (0.203)	0.482 (0.583)	0.0211 (0.0793)	0.116 (0.226)	0.602 (0.687)	0.634 (0.713)
TBC1D23	4 (1%)	285	0.104 (0.211)	0.695 (0.767)	0.076 (0.174)	0.0477 (0.131)	0.395 (0.51)	0.687 (0.761)	0.56 (0.654)	0.318 (0.436)	0.243 (0.363)	0.0422 (0.121)
UGP2	7 (2%)	282	0.108 (0.216)	0.0516 (0.138)	0.287 (0.408)	0.146 (0.26)	0.00747 (0.0435)	0.00873 (0.0479)	0.288 (0.408)	0.0821 (0.181)	0.446 (0.554)	0.627 (0.708)
CLGN	8 (3%)	281	0.195 (0.313)	0.108 (0.216)	0.01 (0.0513)	0.0117 (0.0564)	0.221 (0.341)	0.0621 (0.154)	0.0623 (0.154)	0.104 (0.211)	0.862 (0.909)	0.372 (0.488)
PCCA	8 (3%)	281	0.243 (0.363)	0.0517 (0.138)	0.324 (0.443)	0.0654 (0.158)	0.0998 (0.206)	0.459 (0.563)	0.00453 (0.0318)	0.0101 (0.0515)	0.243 (0.363)	0.316 (0.434)
C11ORF63	15 (5%)	274	0.577 (0.666)	0.0628 (0.155)	0.297 (0.417)	0.083 (0.183)	0.289 (0.409)	0.14 (0.253)	0.0331 (0.105)	0.0651 (0.158)	0.0602 (0.151)	0.00686 (0.041)
SLC38A6	8 (3%)	281	0.456 (0.56)	0.00652 (0.0397)	0.452 (0.558)	0.279 (0.399)	0.0415 (0.121)	0.278 (0.398)	0.0615 (0.153)	0.104 (0.211)	0.106 (0.214)	0.366 (0.484)
VASH1	7 (2%)	282	0.0353 (0.109)	0.192 (0.31)	0.45 (0.556)	0.28 (0.401)	0.509 (0.608)	0.287 (0.407)	0.0774 (0.176)	0.00017 (0.00444)	0.494 (0.594)	1 (1.00)
ITGAV	13 (4%)	276	0.555 (0.649)	0.127 (0.238)	0.768 (0.827)	0.929 (0.965)	0.723 (0.79)	0.3 (0.42)	0.119 (0.23)	0.0109 (0.054)	0.163 (0.281)	0.00128 (0.0152)
ZDHHC5	10 (3%)	279	0.409 (0.522)	0.9 (0.94)	0.0155 (0.0662)	0.0341 (0.107)	0.125 (0.236)	0.448 (0.555)	0.206 (0.325)	0.672 (0.747)	0.722 (0.789)	0.454 (0.559)
COX8C	4 (1%)	285	0.334 (0.451)	0.0695 (0.165)	0.0304 (0.0994)	0.263 (0.385)	0.0999 (0.206)	0.00041 (0.0073)	0.684 (0.758)	0.765 (0.825)	0.298 (0.417)	1 (1.00)
PPP1R12C	5 (2%)	284	0.297 (0.416)	0.0136 (0.0617)	0.21 (0.329)	0.266 (0.386)	0.0535 (0.141)	0.0978 (0.203)	0.306 (0.425)	0.28 (0.4)	0.0289 (0.0958)	0.29 (0.41)
CNGA4	18 (6%)	271	0.477 (0.577)	0.347 (0.465)	0.101 (0.207)	0.0978 (0.203)	0.0173 (0.0705)	0.0067 (0.0404)	0.214 (0.333)	0.0716 (0.168)	0.134 (0.245)	0.463 (0.566)
KIAA0664	13 (4%)	276	0.071 (0.167)	0.0829 (0.182)	0.151 (0.265)	0.0203 (0.0776)	0.235 (0.354)	0.108 (0.216)	0.00811 (0.0463)	0.0797 (0.178)	0.26 (0.381)	1 (1.00)
MMEL1	6 (2%)	283	0.119 (0.23)	0.148 (0.262)	0.452 (0.557)	0.0167 (0.0692)	0.357 (0.474)	0.086 (0.187)	0.109 (0.217)	0.00238 (0.0222)
CCDC25	3 (1%)	286	0.389 (0.504)		0.213 (0.332)	0.0106 (0.0532)	0.361 (0.479)	0.687 (0.761)	0.331 (0.449)	0.00681 (0.0408)
EML3	10 (3%)	279	0.138 (0.251)	0.317 (0.435)	0.0261 (0.091)	0.173 (0.29)	0.131 (0.241)	0.428 (0.538)	0.0109 (0.0538)	0.145 (0.26)	0.423 (0.535)	0.246 (0.366)
MMP10	8 (3%)	281	0.237 (0.357)	0.102 (0.209)	0.129 (0.24)	0.444 (0.551)	0.0438 (0.124)	0.00426 (0.0308)	0.907 (0.945)	0.117 (0.228)	0.544 (0.64)	0.441 (0.549)
RASSF5	4 (1%)	285	0.114 (0.224)	0.067 (0.161)	0.00908 (0.0491)	0.0183 (0.0729)	0.0993 (0.205)	0.221 (0.341)	0.56 (0.654)	0.317 (0.435)	0.774 (0.832)	0.814 (0.865)
BZRAP1	46 (16%)	243	0.101 (0.208)	0.234 (0.354)	0.671 (0.746)	0.864 (0.91)	0.0265 (0.0917)	0.0502 (0.135)	0.957 (0.989)	0.215 (0.334)	0.262 (0.384)	0.144 (0.258)
KRAS	28 (10%)	261	0.136 (0.248)	0.42 (0.534)	0.781 (0.839)	0.216 (0.336)	0.197 (0.315)	0.0111 (0.0547)	0.179 (0.296)	0.163 (0.28)	0.317 (0.435)	0.938 (0.972)
GAS6	16 (6%)	273	0.792 (0.848)	0.0157 (0.0664)	0.332 (0.449)	0.285 (0.405)	0.0903 (0.194)	0.618 (0.701)	0.0966 (0.202)	0.216 (0.335)	0.159 (0.275)	0.198 (0.316)
NT5M	5 (2%)	284	0.511 (0.61)	0.226 (0.345)	0.312 (0.431)	0.263 (0.384)	0.598 (0.685)	0.0338 (0.107)	0.0573 (0.147)	0.275 (0.396)	0.195 (0.313)	0.131 (0.241)
SLC16A6	7 (2%)	282	0.251 (0.371)	0.0203 (0.0776)	0.286 (0.407)	0.841 (0.89)	0.327 (0.446)	0.391 (0.506)	0.289 (0.409)	0.109 (0.218)	0.105 (0.212)	0.292 (0.412)
WDR5	7 (2%)	282	0.343 (0.461)	1 (1.00)	0.634 (0.713)	0.0745 (0.172)	0.974 (1.00)	0.0475 (0.13)	0.0781 (0.176)	0.8 (0.853)	0.44 (0.548)	0.195 (0.313)
C19ORF40	6 (2%)	283	0.576 (0.666)	1 (1.00)	0.173 (0.29)	0.116 (0.226)	0.716 (0.784)	0.539 (0.635)	0.0211 (0.0793)	0.18 (0.296)	0.517 (0.614)	0.129 (0.24)
ZFC3H1	15 (5%)	274	0.215 (0.334)	0.15 (0.264)	0.184 (0.301)	0.0731 (0.17)	0.148 (0.262)	0.0612 (0.152)	0.0809 (0.18)	0.259 (0.38)	0.093 (0.197)	0.0203 (0.0776)
OPTN	9 (3%)	280	0.209 (0.328)	0.16 (0.276)	0.0175 (0.0711)	0.128 (0.239)	0.146 (0.261)	0.0508 (0.136)	0.116 (0.226)	0.125 (0.236)	0.442 (0.55)	0.471 (0.573)
SREBF2	10 (3%)	279	0.766 (0.825)	0.075 (0.173)	0.277 (0.398)	0.0544 (0.143)	0.188 (0.305)	0.304 (0.424)	0.0106 (0.053)	0.363 (0.481)	0.502 (0.602)	0.753 (0.815)
INF2	11 (4%)	278	0.154 (0.269)	0.171 (0.289)	0.0931 (0.197)	0.174 (0.292)	0.0722 (0.169)	0.0518 (0.138)	0.128 (0.24)	0.0472 (0.13)	0.509 (0.608)	0.125 (0.236)
RHOQ	5 (2%)	284	0.514 (0.612)	0.148 (0.262)	0.311 (0.431)	1 (1.00)	0.716 (0.784)	0.6 (0.686)	0.203 (0.322)	0.136 (0.248)	0.0899 (0.193)	0.00549 (0.036)
CFI	12 (4%)	277	0.0717 (0.168)	0.157 (0.272)	0.0723 (0.169)	0.437 (0.546)	0.189 (0.306)	0.0981 (0.204)	0.649 (0.727)	0.0147 (0.0643)	0.427 (0.538)	0.314 (0.433)
SDAD1	7 (2%)	282	0.25 (0.37)	0.0607 (0.152)	0.267 (0.388)	0.0544 (0.143)	0.564 (0.657)	0.00135 (0.0156)	0.293 (0.413)	0.0825 (0.182)	0.546 (0.641)	0.754 (0.815)
TP53RK	6 (2%)	283	0.439 (0.547)	0.936 (0.971)	0.00259 (0.0234)	0.0588 (0.149)	0.426 (0.537)	0.272 (0.392)	0.17 (0.287)	0.842 (0.89)	0.772 (0.831)	0.131 (0.242)
IGFBP7	4 (1%)	285	0.546 (0.641)	0.149 (0.264)			0.1 (0.207)	0.0682 (0.163)	0.12 (0.231)	0.00136 (0.0157)	0.88 (0.923)	0.13 (0.24)
RRS1	7 (2%)	282	0.577 (0.666)	0.446 (0.553)	0.243 (0.363)	0.608 (0.691)	0.0618 (0.153)	0.0006 (0.00937)	0.793 (0.849)	0.0909 (0.195)	0.283 (0.403)	0.474 (0.575)
OGDH	9 (3%)	280	0.213 (0.332)	0.281 (0.401)	0.324 (0.443)	0.0753 (0.173)	0.565 (0.657)	0.109 (0.217)	0.146 (0.261)	0.00361 (0.0284)	0.363 (0.481)	0.0592 (0.149)
CNBD1	13 (4%)	276	0.408 (0.521)	0.0459 (0.128)	0.13 (0.24)	0.658 (0.734)	0.0976 (0.203)	0.101 (0.208)	0.362 (0.479)	0.27 (0.391)	0.791 (0.847)	0.129 (0.24)
CASC3	8 (3%)	281	0.617 (0.7)	0.345 (0.462)	0.00265 (0.0237)	0.907 (0.945)	0.773 (0.832)	0.463 (0.566)	1 (1.00)	0.925 (0.961)	0.539 (0.635)	0.79 (0.847)
PLA2G1B	4 (1%)	285	0.599 (0.685)	0.174 (0.291)	0.221 (0.341)	0.821 (0.871)	0.907 (0.945)	0.714 (0.783)	0.823 (0.873)	0.603 (0.688)	0.0239 (0.0869)	1 (1.00)
TENC1	11 (4%)	278	0.363 (0.481)	0.776 (0.834)	0.15 (0.265)	0.0629 (0.155)	0.372 (0.488)	0.275 (0.396)	0.231 (0.35)	0.221 (0.341)	0.0334 (0.106)	0.696 (0.768)
GNPNAT1	4 (1%)	285	0.602 (0.687)	0.618 (0.7)	1 (1.00)	1 (1.00)	0.246 (0.366)	0.0487 (0.132)	0.558 (0.653)	0.47 (0.573)	0.784 (0.842)	1 (1.00)
C11ORF9	8 (3%)	281	0.195 (0.313)	0.187 (0.305)	0.0132 (0.0608)	0.33 (0.448)	0.419 (0.532)	0.325 (0.443)	0.168 (0.286)	0.214 (0.333)	0.951 (0.983)	1 (1.00)
UBQLN2	5 (2%)	284	0.149 (0.264)	0.491 (0.591)	0.0769 (0.175)	0.0133 (0.061)	0.201 (0.32)	0.255 (0.375)	0.0567 (0.146)	0.277 (0.398)	0.784 (0.842)	0.562 (0.655)
C16ORF7	14 (5%)	275	0.313 (0.432)	0.151 (0.266)	0.276 (0.397)	0.0829 (0.182)	0.932 (0.967)	0.223 (0.342)	0.0273 (0.0929)	0.481 (0.583)	0.876 (0.919)	0.366 (0.484)
VEZF1	5 (2%)	284	0.297 (0.417)	0.344 (0.462)	0.166 (0.283)	0.273 (0.394)	0.797 (0.851)	0.00914 (0.0493)	0.305 (0.425)	0.781 (0.839)	0.938 (0.972)	0.385 (0.501)
GPR160	8 (3%)	281	0.195 (0.313)	0.147 (0.262)	0.176 (0.293)	0.0337 (0.106)	0.464 (0.568)	0.867 (0.913)	0.167 (0.284)	0.222 (0.342)	0.755 (0.816)	0.58 (0.669)
ASPN	6 (2%)	283	0.221 (0.341)	0.0597 (0.15)	0.451 (0.557)	0.116 (0.226)	0.156 (0.271)	0.0924 (0.196)	0.0203 (0.0776)	0.491 (0.591)	0.604 (0.688)	0.376 (0.492)
IGF2BP3	5 (2%)	284	0.601 (0.686)	0.0359 (0.11)	0.309 (0.429)	0.425 (0.536)	0.461 (0.565)	0.425 (0.536)	0.0564 (0.146)	0.0796 (0.178)	0.387 (0.502)	0.195 (0.312)
TMEM41B	4 (1%)	285	0.601 (0.687)	0.857 (0.905)	0.398 (0.512)	0.059 (0.149)			0.359 (0.477)	0.0186 (0.0733)	0.882 (0.925)	0.127 (0.239)
ENTPD2	4 (1%)	285	0.199 (0.317)	0.224 (0.343)	0.209 (0.328)	0.42 (0.533)	0.739 (0.804)	0.713 (0.781)	0.356 (0.473)	0.0184 (0.0731)
ZNF626	15 (5%)	274	0.399 (0.512)	0.157 (0.272)	0.0977 (0.203)	0.0265 (0.0917)	0.626 (0.708)	0.976 (1.00)	1 (1.00)	0.735 (0.801)	0.651 (0.729)	0.166 (0.284)
MYOCD	13 (4%)	276	0.0023 (0.0218)	0.145 (0.26)	0.0511 (0.137)	0.876 (0.919)	0.148 (0.262)	0.545 (0.64)	0.47 (0.573)	0.434 (0.544)	0.0964 (0.202)	0.0515 (0.137)
TMEM55A	3 (1%)	286	0.631 (0.711)		0.211 (0.33)	0.18 (0.296)	0.665 (0.74)	0.00591 (0.0376)	0.795 (0.85)	0.0516 (0.138)
HEPACAM2	8 (3%)	281	0.0839 (0.184)	0.654 (0.731)	0.156 (0.271)	0.708 (0.777)	0.107 (0.214)	0.066 (0.159)	0.334 (0.451)	0.0182 (0.0726)	0.915 (0.952)	0.371 (0.487)
SERPINB8	8 (3%)	281	0.234 (0.353)	0.238 (0.358)	0.784 (0.841)	0.265 (0.386)	0.0648 (0.157)	0.0457 (0.127)	0.727 (0.794)	0.105 (0.212)	0.147 (0.261)	1 (1.00)
TAF1L	23 (8%)	266	0.119 (0.23)	0.147 (0.261)	0.0726 (0.169)	0.154 (0.269)	0.029 (0.0958)	0.845 (0.894)	0.122 (0.232)	0.0622 (0.154)	0.818 (0.869)	0.674 (0.749)
H2AFY2	7 (2%)	282	0.787 (0.845)	0.148 (0.262)	0.129 (0.24)	0.752 (0.814)	0.746 (0.81)	0.886 (0.928)	0.615 (0.698)	0.515 (0.612)	0.0269 (0.0922)	0.291 (0.411)
CNKSR2	12 (4%)	277	0.947 (0.98)	1 (1.00)	0.0808 (0.18)	0.123 (0.233)	0.412 (0.526)	0.153 (0.267)	0.0268 (0.0922)	0.273 (0.393)	0.914 (0.952)	0.752 (0.814)
OR7C1	6 (2%)	283	0.297 (0.417)	0.0595 (0.15)	0.31 (0.429)	0.262 (0.384)	0.0431 (0.123)	0.0685 (0.163)	0.17 (0.288)	0.443 (0.551)	0.491 (0.591)	0.371 (0.487)
OLFML3	4 (1%)	285	0.472 (0.574)	0.618 (0.7)	0.0303 (0.0992)	0.18 (0.297)			0.121 (0.231)	0.0634 (0.156)
RINT1	5 (2%)	284	0.126 (0.237)	0.0597 (0.15)	0.397 (0.512)	0.0483 (0.132)	0.202 (0.321)	0.0981 (0.204)	0.0574 (0.147)	0.0787 (0.177)	0.692 (0.765)	0.289 (0.409)
LMTK3	8 (3%)	281	0.493 (0.593)	0.486 (0.587)	0.572 (0.662)	0.475 (0.576)	0.0464 (0.128)	0.173 (0.291)	0.425 (0.536)	0.118 (0.228)	0.32 (0.438)	0.13 (0.24)
CPB2	9 (3%)	280	0.0565 (0.146)	0.0171 (0.0701)	0.174 (0.292)	0.21 (0.329)	0.0557 (0.145)	0.797 (0.851)	0.116 (0.226)	0.105 (0.212)	0.584 (0.672)	0.752 (0.814)
KRTAP10-9	9 (3%)	280	0.165 (0.282)	0.237 (0.357)	0.0745 (0.172)	0.403 (0.517)	0.0698 (0.165)	0.163 (0.28)	0.116 (0.226)	0.00541 (0.0358)	0.869 (0.914)	0.225 (0.344)
YIF1A	3 (1%)	286	0.545 (0.641)		0.207 (0.326)	0.265 (0.386)	0.245 (0.365)	0.00032 (0.00632)	0.795 (0.849)	0.525 (0.622)
ACTL6A	8 (3%)	281	0.0844 (0.185)	0.00467 (0.0323)	0.266 (0.387)	0.143 (0.257)	0.157 (0.272)	0.462 (0.566)	0.242 (0.362)	0.258 (0.379)	0.915 (0.952)	0.789 (0.846)
HCRTR2	9 (3%)	280	0.454 (0.559)	0.213 (0.332)	0.268 (0.388)	0.557 (0.652)	0.131 (0.241)	0.036 (0.11)	0.502 (0.601)	0.6 (0.686)	0.301 (0.421)	0.0912 (0.195)
KCTD21	7 (2%)	282	0.344 (0.462)	0.936 (0.971)	0.131 (0.241)	0.106 (0.214)	0.0899 (0.193)	0.237 (0.357)	0.00961 (0.0501)	0.09 (0.193)	0.0588 (0.149)	0.292 (0.412)
EOMES	8 (3%)	281	0.0577 (0.147)	0.0466 (0.129)	0.799 (0.852)	0.907 (0.945)	0.357 (0.474)	0.107 (0.215)	0.335 (0.452)	0.181 (0.298)	0.931 (0.966)	0.122 (0.232)
FAAH	4 (1%)	285	0.47 (0.573)	0.543 (0.639)	0.221 (0.341)	0.409 (0.522)	0.54 (0.636)	0.0482 (0.132)	0.686 (0.76)	1 (1.00)
EYA4	15 (5%)	274	0.348 (0.466)	0.815 (0.866)	0.00847 (0.0473)	0.389 (0.504)	0.454 (0.559)	0.829 (0.878)	0.207 (0.326)	0.209 (0.328)	0.862 (0.909)	0.697 (0.768)
OR2J3	6 (2%)	283	0.577 (0.666)	0.0131 (0.0608)	1 (1.00)	0.148 (0.262)	0.608 (0.691)	0.953 (0.985)	1 (1.00)	0.306 (0.425)	0.691 (0.765)	0.29 (0.41)
TLR4	21 (7%)	268	0.721 (0.788)	0.048 (0.131)	0.956 (0.988)	0.423 (0.535)	0.108 (0.216)	0.682 (0.756)	0.0887 (0.191)	0.112 (0.222)	0.46 (0.564)	0.736 (0.802)
ERN2	11 (4%)	278	0.217 (0.337)	0.772 (0.831)	0.666 (0.741)	0.575 (0.664)	0.239 (0.36)	0.0003 (0.00609)	0.672 (0.747)	0.469 (0.572)	0.874 (0.918)	0.366 (0.484)
KCTD9	10 (3%)	279	0.139 (0.251)	0.409 (0.522)	0.58 (0.669)	0.521 (0.619)	0.222 (0.341)	0.00501 (0.0341)	0.0558 (0.145)	0.214 (0.333)	0.274 (0.394)	0.0923 (0.196)
TRAM1L1	13 (4%)	276	0.227 (0.346)	0.00105 (0.0134)	0.275 (0.396)	0.127 (0.239)	0.786 (0.843)	0.652 (0.729)	0.503 (0.602)	0.453 (0.558)	0.923 (0.959)	0.664 (0.739)
CYP7B1	16 (6%)	273	0.86 (0.908)	0.789 (0.846)	0.752 (0.814)	0.489 (0.589)	0.487 (0.588)	0.00129 (0.0152)	0.342 (0.46)	0.512 (0.61)	0.962 (0.993)	0.211 (0.33)
STAU2	8 (3%)	281	0.454 (0.559)	0.695 (0.767)	0.324 (0.442)	0.0055 (0.036)	0.456 (0.561)	0.607 (0.691)	0.425 (0.536)	0.612 (0.695)	0.114 (0.224)	1 (1.00)
MDM2	5 (2%)	284	0.515 (0.613)	0.492 (0.592)	0.0437 (0.124)	0.275 (0.395)	1 (1.00)	1 (1.00)	0.306 (0.425)	0.0995 (0.206)
MZF1	10 (3%)	279	0.0426 (0.122)	0.296 (0.416)	0.479 (0.58)	0.842 (0.89)	0.797 (0.851)	0.76 (0.82)	0.206 (0.324)	0.783 (0.841)	0.0525 (0.139)	0.66 (0.736)
PIGT	8 (3%)	281	0.0863 (0.188)	0.0309 (0.1)	0.524 (0.621)	0.459 (0.563)	0.33 (0.448)	0.234 (0.354)	0.169 (0.287)	0.628 (0.709)	0.13 (0.24)	0.0719 (0.168)
CHRNB3	11 (4%)	278	0.147 (0.261)	0.367 (0.484)	0.741 (0.806)	0.85 (0.898)	0.572 (0.662)	0.583 (0.671)	0.0341 (0.107)	0.183 (0.299)	0.794 (0.849)	1 (1.00)
PCBP2	4 (1%)	285	0.198 (0.316)	0.0356 (0.109)			0.165 (0.282)	0.397 (0.512)	0.119 (0.23)	0.0638 (0.156)	0.193 (0.311)	0.129 (0.24)
HIST1H1B	9 (3%)	280	0.726 (0.793)	0.0191 (0.0747)	0.0611 (0.152)	0.0749 (0.173)	0.0816 (0.181)	0.604 (0.689)	0.146 (0.26)	0.393 (0.508)	0.21 (0.329)	0.266 (0.386)
SCAMP2	6 (2%)	283	0.195 (0.313)	0.0968 (0.202)	0.288 (0.409)	0.678 (0.752)	0.191 (0.309)	0.0428 (0.122)	0.438 (0.547)	0.115 (0.225)	0.426 (0.536)	0.634 (0.713)
PHF20	11 (4%)	278	0.863 (0.91)	0.747 (0.811)	0.176 (0.294)	0.0766 (0.175)	0.0603 (0.151)	0.271 (0.391)	0.13 (0.24)	0.197 (0.314)	0.265 (0.386)	0.0241 (0.0873)
DUSP9	5 (2%)	284	0.862 (0.909)	0.184 (0.301)	0.121 (0.231)	0.0179 (0.072)	0.176 (0.293)	0.183 (0.299)	0.249 (0.369)	0.693 (0.766)
MGST2	3 (1%)	286	0.545 (0.641)	0.0675 (0.161)			0.0983 (0.204)	0.00043 (0.00755)	0.331 (0.449)	0.238 (0.358)
MAP2K1	5 (2%)	284	0.334 (0.451)	0.936 (0.971)	0.745 (0.809)	0.52 (0.617)	0.0441 (0.124)	0.0513 (0.137)	0.308 (0.427)	0.461 (0.565)	0.783 (0.841)	0.473 (0.575)
FOXQ1	3 (1%)	286	0.544 (0.64)				0.361 (0.478)	0.0384 (0.115)	0.328 (0.447)	0.892 (0.934)
IK	6 (2%)	283	0.58 (0.668)	1 (1.00)	0.175 (0.292)	0.314 (0.433)	1 (1.00)	0.914 (0.952)	0.667 (0.742)	0.0145 (0.0638)	0.518 (0.615)	0.755 (0.816)
FAHD2B	5 (2%)	284	0.301 (0.42)	0.15 (0.264)	0.167 (0.285)	0.0591 (0.149)	0.0738 (0.171)	0.599 (0.685)	0.0563 (0.146)	0.00404 (0.0299)
LCE1A	3 (1%)	286	0.115 (0.225)	0.772 (0.831)	0.775 (0.834)	0.102 (0.208)	0.81 (0.863)	0.962 (0.994)	0.103 (0.209)	0.0284 (0.0946)	0.209 (0.328)	0.382 (0.498)
PRKAR1B	5 (2%)	284	0.299 (0.419)	0.0661 (0.159)	0.689 (0.762)	0.153 (0.268)	0.0747 (0.172)	0.0822 (0.182)	0.203 (0.321)	0.528 (0.624)	0.0391 (0.116)	0.565 (0.657)
PPP1R13B	10 (3%)	279	0.2 (0.319)	0.303 (0.423)	0.701 (0.771)	0.0312 (0.101)	0.757 (0.817)	0.266 (0.387)	0.0799 (0.178)	0.129 (0.24)	0.454 (0.559)	0.231 (0.35)
PRICKLE4	6 (2%)	283	0.121 (0.231)	1 (1.00)	0.0679 (0.162)	0.104 (0.211)	0.18 (0.297)	0.0812 (0.18)	0.0203 (0.0776)	0.12 (0.231)	0.337 (0.455)	0.564 (0.657)
TAF6	12 (4%)	277	0.0583 (0.148)	0.294 (0.414)	0.18 (0.296)	0.271 (0.391)	0.141 (0.254)	0.0157 (0.0664)	0.452 (0.557)	0.0924 (0.196)	0.795 (0.849)	0.172 (0.289)
ENOSF1	7 (2%)	282	0.494 (0.593)	0.406 (0.519)	0.0888 (0.192)	0.173 (0.291)	0.624 (0.706)	0.883 (0.926)	0.435 (0.544)	0.048 (0.131)	0.756 (0.816)	0.473 (0.575)
TRIM27	5 (2%)	284	0.148 (0.262)	0.0959 (0.201)	0.399 (0.512)	0.0849 (0.186)	0.0538 (0.142)	0.424 (0.536)	0.0579 (0.147)	0.00026 (0.00565)	0.556 (0.65)	0.195 (0.313)
KIAA1609	7 (2%)	282	0.0355 (0.109)	0.351 (0.469)	0.744 (0.808)	0.611 (0.695)	0.227 (0.346)	0.0746 (0.172)	0.0783 (0.177)	0.0833 (0.183)	0.525 (0.622)	0.191 (0.309)
KIAA0586	10 (3%)	279	0.522 (0.62)	0.701 (0.771)	0.00129 (0.0152)	0.176 (0.294)	0.115 (0.225)	0.112 (0.22)	0.0801 (0.179)	0.0543 (0.143)	0.684 (0.759)	0.246 (0.366)
GALK1	4 (1%)	285	0.391 (0.506)		0.0298 (0.0981)	0.0538 (0.142)	0.598 (0.685)	0.135 (0.247)	0.121 (0.231)	0.249 (0.369)
MYCT1	6 (2%)	283	0.526 (0.623)	0.249 (0.369)	0.166 (0.284)	0.273 (0.394)	0.332 (0.45)	0.421 (0.534)	0.138 (0.251)	0.0156 (0.0664)	0.653 (0.731)	0.375 (0.491)
MAPK15	7 (2%)	282	0.169 (0.287)	0.149 (0.263)	0.527 (0.623)	0.842 (0.891)	0.231 (0.35)	0.0149 (0.0646)	0.437 (0.546)	0.128 (0.24)	0.55 (0.644)	0.383 (0.499)
TM6SF1	6 (2%)	283	0.174 (0.292)	0.0967 (0.202)	0.171 (0.288)	0.278 (0.399)	0.0986 (0.205)	0.228 (0.347)	0.169 (0.287)	0.00266 (0.0238)	0.786 (0.843)	0.756 (0.817)
CCDC27	6 (2%)	283	0.576 (0.665)	0.305 (0.425)	0.606 (0.69)	0.75 (0.813)	0.565 (0.657)	0.0475 (0.13)	0.437 (0.546)	0.305 (0.425)	0.86 (0.908)	1 (1.00)
DUSP11	4 (1%)	285	0.472 (0.574)	0.15 (0.265)	0.0293 (0.0969)	0.0545 (0.143)	0.245 (0.365)	0.689 (0.763)	0.119 (0.23)	0.0635 (0.156)	0.336 (0.453)	0.13 (0.24)
RASA2	8 (3%)	281	0.123 (0.233)	0.307 (0.426)	0.325 (0.443)	0.18 (0.296)	0.716 (0.784)	0.618 (0.701)	0.0614 (0.153)	0.018 (0.0721)	0.743 (0.807)	0.384 (0.499)
ZBTB40	10 (3%)	279	0.432 (0.543)	0.0187 (0.0737)	0.1 (0.207)	0.227 (0.346)	0.54 (0.636)	0.372 (0.488)	0.204 (0.322)	0.132 (0.242)	0.872 (0.917)	0.124 (0.234)
P2RX1	3 (1%)	286	0.547 (0.642)	0.148 (0.262)					1 (1.00)	0.7 (0.77)	0.518 (0.615)	0.0428 (0.122)
ACSS2	9 (3%)	280	0.0699 (0.165)	0.504 (0.603)	0.0622 (0.154)	0.00236 (0.0221)	0.404 (0.517)	0.162 (0.279)	0.183 (0.3)	0.198 (0.316)	0.539 (0.635)	0.375 (0.491)
CALCRL	8 (3%)	281	0.0167 (0.0691)	0.422 (0.534)	0.602 (0.687)	0.208 (0.327)	0.326 (0.444)	0.402 (0.515)	0.169 (0.286)	0.0873 (0.189)	0.894 (0.935)	1 (1.00)
UNC50	3 (1%)	286					0.1 (0.206)	0.0674 (0.161)	0.329 (0.448)	0.00698 (0.0415)
PFAS	9 (3%)	280	0.164 (0.281)	0.334 (0.451)	0.0424 (0.122)	0.406 (0.519)	0.129 (0.24)	0.0718 (0.168)	0.502 (0.602)	0.078 (0.176)	0.991 (1.00)	0.696 (0.768)
CENPN	4 (1%)	285	0.471 (0.573)	0.132 (0.242)	0.21 (0.329)	0.179 (0.296)	0.0262 (0.0911)	0.154 (0.269)	0.122 (0.232)	0.389 (0.504)	0.893 (0.934)	0.376 (0.492)
HOOK1	6 (2%)	283	0.175 (0.293)	0.352 (0.469)	0.206 (0.324)	0.0806 (0.179)	0.0444 (0.124)	0.178 (0.295)	0.168 (0.286)	0.114 (0.224)	0.606 (0.69)	0.194 (0.312)
TDRD3	11 (4%)	278	0.435 (0.545)	0.497 (0.597)	0.179 (0.296)	0.0736 (0.171)	0.773 (0.832)	0.861 (0.908)	0.792 (0.848)	0.242 (0.362)	0.0318 (0.102)	0.696 (0.768)
EIF2C4	10 (3%)	279	0.708 (0.777)	0.342 (0.46)	0.0481 (0.131)	0.296 (0.416)	0.371 (0.487)	0.379 (0.495)	0.842 (0.89)	0.0762 (0.174)	0.307 (0.427)	0.873 (0.918)
MTMR11	8 (3%)	281	1 (1.00)	0.254 (0.374)	0.203 (0.322)	0.156 (0.271)	0.966 (0.998)	0.236 (0.356)	0.425 (0.536)	0.194 (0.311)	0.526 (0.623)	0.0169 (0.0696)
TMEM41A	6 (2%)	283	0.136 (0.247)	0.0597 (0.15)	0.398 (0.512)	0.245 (0.365)	0.564 (0.657)	0.146 (0.26)	0.168 (0.285)	0.443 (0.55)	0.596 (0.683)	0.37 (0.487)
GBP7	9 (3%)	280	0.0677 (0.162)	0.232 (0.35)	0.0923 (0.196)	0.745 (0.809)	0.449 (0.556)	0.392 (0.506)	0.227 (0.346)	0.445 (0.552)	0.804 (0.857)	0.206 (0.325)
PLOD3	14 (5%)	275	0.0988 (0.205)	0.0905 (0.194)	0.405 (0.518)	0.256 (0.376)	0.0991 (0.205)	0.423 (0.535)	0.23 (0.349)	0.152 (0.267)	0.561 (0.654)	0.0588 (0.149)
PLAGL2	7 (2%)	282	0.607 (0.691)	0.835 (0.884)	0.45 (0.556)	0.369 (0.486)	0.308 (0.428)	0.192 (0.31)	1 (1.00)	0.26 (0.381)	0.663 (0.739)	0.752 (0.814)
MAP7D1	12 (4%)	277	0.327 (0.446)	0.241 (0.361)	0.313 (0.432)	0.467 (0.57)	0.0704 (0.166)	0.0881 (0.19)	0.282 (0.402)	0.685 (0.76)	0.874 (0.918)	0.446 (0.553)
SLC16A1	7 (2%)	282	0.574 (0.664)	0.936 (0.971)	0.452 (0.557)	0.131 (0.241)	0.322 (0.44)	0.0715 (0.168)	0.0502 (0.135)	0.249 (0.369)	0.657 (0.733)	0.289 (0.41)
GALNTL1	10 (3%)	279	0.237 (0.357)	0.612 (0.695)	0.108 (0.216)	0.0776 (0.176)	0.802 (0.855)	0.852 (0.9)	0.456 (0.561)	0.546 (0.641)	0.992 (1.00)	0.607 (0.691)
FAM46D	9 (3%)	280	0.43 (0.541)	0.39 (0.505)	0.599 (0.685)	0.152 (0.267)	0.389 (0.504)	0.283 (0.403)	0.908 (0.946)	1 (1.00)	0.329 (0.447)	0.468 (0.571)
ZIM3	10 (3%)	279	0.557 (0.651)	0.584 (0.672)	0.579 (0.667)	0.393 (0.508)	0.913 (0.951)	0.503 (0.602)	0.339 (0.457)	0.327 (0.445)	0.253 (0.373)	0.44 (0.548)
CDKN2A	12 (4%)	277	0.747 (0.811)	0.622 (0.704)	0.403 (0.516)	0.593 (0.68)	0.509 (0.608)	0.816 (0.867)	0.0647 (0.157)	0.527 (0.623)	0.0926 (0.196)	0.111 (0.22)
HEXDC	5 (2%)	284	0.298 (0.417)	0.279 (0.399)	0.168 (0.285)	0.144 (0.258)	0.41 (0.523)	0.372 (0.488)	0.307 (0.426)	0.571 (0.662)	0.298 (0.418)	1 (1.00)
PODN	13 (4%)	276	0.325 (0.443)	0.296 (0.416)	0.153 (0.267)	0.158 (0.273)	0.224 (0.343)	0.408 (0.522)	0.172 (0.29)	0.412 (0.526)	0.333 (0.451)	0.666 (0.741)
KBTBD10	7 (2%)	282	0.0691 (0.164)	0.0616 (0.153)	0.169 (0.286)	0.524 (0.621)	0.433 (0.544)	0.415 (0.528)	0.434 (0.544)	0.273 (0.393)	0.449 (0.556)	0.295 (0.414)
IDH2	4 (1%)	285	0.201 (0.32)	0.531 (0.627)	0.31 (0.43)	0.424 (0.536)	0.355 (0.473)	0.525 (0.622)	0.354 (0.472)	0.251 (0.371)	0.493 (0.593)	0.565 (0.657)
CBLL1	6 (2%)	283	0.394 (0.509)	0.626 (0.708)	0.331 (0.448)	0.638 (0.717)	0.536 (0.632)	0.328 (0.446)	0.5 (0.599)	0.565 (0.657)	0.604 (0.688)	0.566 (0.658)
C1QA	5 (2%)	284	0.3 (0.42)	0.349 (0.467)	0.311 (0.431)	0.423 (0.535)	0.117 (0.228)	0.14 (0.253)	0.305 (0.425)	0.461 (0.565)	0.703 (0.773)	0.369 (0.485)
DAO	11 (4%)	278	0.511 (0.61)	0.0868 (0.188)	0.823 (0.873)	0.708 (0.777)	0.423 (0.535)	0.181 (0.297)	0.791 (0.848)	0.471 (0.574)	0.208 (0.327)	0.282 (0.402)
CETN3	7 (2%)	282	0.251 (0.37)	0.108 (0.216)	0.801 (0.853)	0.172 (0.29)	0.715 (0.783)	0.351 (0.469)	0.0781 (0.176)	0.0823 (0.182)	0.177 (0.294)	0.37 (0.486)
PANK1	8 (3%)	281	0.112 (0.22)	0.152 (0.267)	0.157 (0.272)	0.534 (0.63)	0.24 (0.36)	0.136 (0.248)	0.168 (0.286)	0.772 (0.831)	0.398 (0.512)	1 (1.00)
PRKAB1	6 (2%)	283	0.814 (0.865)	0.58 (0.668)	0.45 (0.556)	0.638 (0.716)	0.904 (0.943)	0.35 (0.468)	0.767 (0.826)	0.945 (0.978)	0.495 (0.594)	1 (1.00)
CYP27B1	5 (2%)	284	0.512 (0.61)	0.654 (0.731)	0.282 (0.402)	0.315 (0.433)	0.733 (0.799)	0.793 (0.849)	0.621 (0.703)	0.651 (0.729)	0.0798 (0.178)	0.372 (0.488)
MSL3	10 (3%)	279	0.239 (0.36)	0.114 (0.224)	0.84 (0.89)	0.697 (0.768)	0.13 (0.24)	0.156 (0.271)	0.123 (0.233)	0.234 (0.354)	0.654 (0.731)	0.882 (0.925)
KDELR3	3 (1%)	286	1 (1.00)	0.696 (0.768)	0.21 (0.329)	0.365 (0.483)			0.463 (0.566)	0.1 (0.206)	0.742 (0.807)	0.753 (0.815)
FBXO48	4 (1%)	285	0.393 (0.508)	0.15 (0.264)	0.421 (0.534)	0.364 (0.481)	0.355 (0.473)	0.256 (0.376)	0.122 (0.232)	0.0623 (0.154)	0.744 (0.808)	0.129 (0.24)
TAS2R42	4 (1%)	285	0.811 (0.864)	0.0558 (0.145)	1 (1.00)	0.646 (0.725)	0.36 (0.478)	0.43 (0.54)	0.217 (0.337)	0.514 (0.611)	0.421 (0.534)	0.129 (0.24)
MOCS2	4 (1%)	285	0.276 (0.396)		0.119 (0.23)	0.819 (0.87)	0.738 (0.803)	0.204 (0.322)	0.121 (0.231)	0.25 (0.37)
PIK3R3	8 (3%)	281	0.0789 (0.177)	0.189 (0.306)	0.797 (0.851)	0.515 (0.613)	0.0685 (0.163)	0.302 (0.422)	0.728 (0.794)	0.303 (0.423)	0.508 (0.606)	0.472 (0.574)
WNT1	8 (3%)	281	0.734 (0.8)	0.206 (0.325)	0.105 (0.213)	1 (1.00)	0.309 (0.429)	0.172 (0.29)	0.426 (0.537)	0.386 (0.502)	0.585 (0.672)	0.268 (0.389)
CTSA	4 (1%)	285	0.204 (0.323)	0.345 (0.462)	1 (1.00)	0.648 (0.726)	0.311 (0.431)	0.979 (1.00)	0.557 (0.651)	0.317 (0.435)	0.938 (0.972)	0.383 (0.499)
EVL	7 (2%)	282	0.0752 (0.173)	0.281 (0.401)	0.306 (0.425)	0.753 (0.814)	0.188 (0.306)	0.174 (0.291)	0.288 (0.408)	0.388 (0.503)	0.299 (0.418)	0.384 (0.5)
NCAPH	10 (3%)	279	0.117 (0.228)	0.895 (0.936)	0.178 (0.295)	0.271 (0.391)	0.448 (0.555)	0.224 (0.343)	0.0574 (0.147)	0.509 (0.608)	0.637 (0.715)	0.628 (0.709)
ANKRD40	5 (2%)	284	0.458 (0.563)	0.534 (0.631)	0.465 (0.569)	0.406 (0.52)	0.105 (0.213)	0.226 (0.344)	0.306 (0.425)	0.569 (0.66)	0.206 (0.324)	0.128 (0.24)
ERBB2	14 (5%)	275	0.761 (0.821)	0.418 (0.532)	0.266 (0.387)	0.564 (0.657)	0.252 (0.371)	0.417 (0.531)	0.112 (0.22)	0.132 (0.243)	0.573 (0.663)	0.444 (0.551)
TBL1XR1	5 (2%)	284	0.403 (0.517)	0.224 (0.343)	1 (1.00)	1 (1.00)	0.715 (0.783)	0.178 (0.295)	0.0566 (0.146)	0.207 (0.325)	0.882 (0.924)	0.565 (0.657)
CCDC148	5 (2%)	284	0.458 (0.562)	0.108 (0.216)	0.689 (0.762)	0.614 (0.697)	0.706 (0.776)	0.92 (0.957)	0.0571 (0.146)	0.277 (0.398)	0.439 (0.547)	0.127 (0.238)
ANKRD23	5 (2%)	284	0.797 (0.851)	0.384 (0.5)	0.281 (0.401)	0.747 (0.81)	0.948 (0.98)	0.351 (0.469)	1 (1.00)	0.736 (0.802)	0.57 (0.661)	0.813 (0.865)
C19ORF26	7 (2%)	282	0.0746 (0.172)	0.305 (0.425)	0.353 (0.471)	0.172 (0.289)	0.107 (0.215)	0.118 (0.229)	0.435 (0.544)	0.129 (0.24)	0.0758 (0.174)	0.472 (0.574)
SOAT1	6 (2%)	283	0.408 (0.521)	0.0607 (0.152)	0.0693 (0.165)	0.315 (0.433)	0.141 (0.254)	0.21 (0.329)	0.169 (0.287)	0.178 (0.295)	0.142 (0.256)	0.631 (0.711)
FAM55C	13 (4%)	276	0.187 (0.304)	0.314 (0.433)	0.268 (0.388)	0.54 (0.636)	0.109 (0.217)	0.364 (0.482)	0.182 (0.298)	0.475 (0.576)	0.489 (0.589)	0.383 (0.499)
SLC25A17	4 (1%)	285	0.105 (0.213)		0.0775 (0.176)	0.906 (0.945)	0.354 (0.472)	0.432 (0.543)	0.562 (0.655)	0.434 (0.544)
NRAS	4 (1%)	285	0.904 (0.943)	0.417 (0.531)	0.847 (0.895)	0.905 (0.944)	0.54 (0.636)	0.645 (0.723)	0.561 (0.654)	0.765 (0.825)	1 (1.00)	0.383 (0.499)
MRI1	4 (1%)	285	0.602 (0.687)	0.28 (0.401)	0.419 (0.533)	0.183 (0.3)	0.295 (0.415)	0.136 (0.248)	0.122 (0.233)	0.062 (0.153)
NUFIP2	7 (2%)	282	0.0571 (0.146)	0.22 (0.34)	0.0873 (0.189)	0.253 (0.373)	0.563 (0.656)	0.662 (0.738)	0.794 (0.849)	0.8 (0.853)	0.692 (0.765)	0.534 (0.63)
ZNF23	3 (1%)	286					0.667 (0.742)	0.221 (0.341)	0.794 (0.849)	0.698 (0.769)
SPHK2	3 (1%)	286	0.545 (0.64)						0.33 (0.448)	0.239 (0.36)
ELOVL2	7 (2%)	282	1 (1.00)	0.317 (0.435)	0.0672 (0.161)	0.0744 (0.172)	0.438 (0.547)	0.342 (0.46)	0.143 (0.258)	0.247 (0.367)	0.324 (0.442)	0.227 (0.346)
ABLIM2	11 (4%)	278	0.0647 (0.157)	0.158 (0.274)	0.152 (0.267)	0.288 (0.409)	0.222 (0.342)	0.465 (0.568)	0.0702 (0.166)	0.338 (0.455)	0.102 (0.209)	0.0938 (0.198)
TPTE2	10 (3%)	279	0.696 (0.768)	0.551 (0.646)	0.177 (0.294)	0.867 (0.913)	0.0604 (0.151)	0.055 (0.144)	0.716 (0.784)	0.213 (0.332)	0.147 (0.261)	0.314 (0.433)
BEST3	11 (4%)	278	0.849 (0.897)	0.704 (0.774)	0.277 (0.398)	0.143 (0.257)	0.594 (0.681)	0.938 (0.972)	0.423 (0.535)	0.924 (0.96)	0.607 (0.691)	0.12 (0.23)
ARHGEF5	5 (2%)	284	0.299 (0.419)	0.225 (0.343)	0.747 (0.81)	0.859 (0.906)	0.716 (0.784)	0.39 (0.504)	0.305 (0.425)	0.101 (0.207)
FAM92B	3 (1%)	286	0.266 (0.386)	0.695 (0.767)			0.866 (0.912)	0.46 (0.564)	0.46 (0.564)	0.892 (0.934)
OR51A7	6 (2%)	283	0.774 (0.833)	0.527 (0.623)	0.196 (0.314)	0.939 (0.973)	0.507 (0.606)	0.703 (0.773)	1 (1.00)	0.945 (0.978)	0.935 (0.97)	0.727 (0.794)
DDX43	10 (3%)	279	0.185 (0.302)	0.362 (0.48)	0.1 (0.206)	0.457 (0.561)	0.816 (0.867)	0.497 (0.597)	0.208 (0.327)	0.783 (0.841)	0.437 (0.546)	0.0915 (0.195)
ZNF701	8 (3%)	281	0.247 (0.367)	0.951 (0.983)	0.324 (0.442)	0.551 (0.646)	0.638 (0.717)	0.347 (0.465)	0.724 (0.791)	0.249 (0.368)	0.624 (0.705)	0.872 (0.917)
LYSMD3	10 (3%)	279	0.187 (0.304)	0.0702 (0.166)	0.36 (0.478)	0.958 (0.989)	0.247 (0.367)	0.461 (0.565)	0.343 (0.461)	0.51 (0.608)	0.915 (0.952)	0.696 (0.768)
DSTN	5 (2%)	284	0.472 (0.574)	0.281 (0.401)	0.0763 (0.175)	0.151 (0.265)	0.243 (0.363)	0.224 (0.343)	0.0566 (0.146)	0.0797 (0.178)	0.389 (0.504)	0.194 (0.312)
PTPDC1	8 (3%)	281	0.933 (0.968)	1 (1.00)	0.573 (0.663)	0.423 (0.535)	0.831 (0.88)	0.372 (0.488)	0.426 (0.537)	0.225 (0.343)	0.502 (0.601)	0.627 (0.708)
KRT24	5 (2%)	284	0.572 (0.662)	0.267 (0.388)	0.0774 (0.176)	0.0845 (0.185)	0.708 (0.776)	0.0861 (0.187)	0.202 (0.321)	0.532 (0.628)	0.656 (0.733)	0.635 (0.714)
EEF2K	9 (3%)	280	0.649 (0.727)	1 (1.00)	0.572 (0.662)	0.252 (0.371)	0.511 (0.61)	0.36 (0.477)	0.284 (0.404)	0.374 (0.49)	0.449 (0.556)	0.294 (0.414)
CNOT6	7 (2%)	282	0.177 (0.294)	0.12 (0.231)	0.571 (0.662)	0.419 (0.533)	0.175 (0.293)	0.205 (0.323)	0.289 (0.409)	0.198 (0.316)	0.639 (0.717)	0.495 (0.594)
SIK1	5 (2%)	284	0.296 (0.416)	0.347 (0.465)	0.119 (0.23)	1 (1.00)	0.461 (0.564)	0.973 (1.00)	0.311 (0.43)	0.569 (0.66)	0.798 (0.851)	1 (1.00)
LINGO4	10 (3%)	279	0.874 (0.918)	0.0672 (0.161)	0.443 (0.55)	0.108 (0.216)	0.587 (0.674)	0.561 (0.654)	0.0788 (0.177)	0.133 (0.244)	0.874 (0.918)	0.699 (0.77)
SERPINA1	7 (2%)	282	0.18 (0.296)	1 (1.00)	0.899 (0.939)	0.561 (0.655)	0.0641 (0.156)	0.45 (0.556)	0.29 (0.41)	0.476 (0.577)	1 (1.00)	0.569 (0.66)
TCEAL5	6 (2%)	283	0.223 (0.342)	0.15 (0.264)	0.166 (0.283)	0.82 (0.871)	0.562 (0.655)	0.919 (0.956)	0.11 (0.218)	0.614 (0.697)	0.121 (0.231)	0.313 (0.432)
PIAS1	10 (3%)	279	0.347 (0.465)	0.528 (0.624)	0.154 (0.269)	0.0756 (0.174)	0.0998 (0.206)	0.29 (0.41)	0.0785 (0.177)	0.132 (0.242)	0.133 (0.244)	0.456 (0.561)
SMAD7	5 (2%)	284	1 (1.00)	0.857 (0.905)	1 (1.00)	0.114 (0.224)	0.848 (0.896)	0.208 (0.327)	0.203 (0.321)	0.78 (0.839)	0.0576 (0.147)	0.13 (0.24)
UPK2	3 (1%)	286	0.544 (0.64)		1 (1.00)	0.367 (0.484)			0.327 (0.446)	0.241 (0.361)
PNMT	8 (3%)	281	0.663 (0.739)	0.894 (0.935)	0.6 (0.686)	0.918 (0.955)	0.751 (0.814)	0.756 (0.817)	0.245 (0.365)	0.892 (0.934)	0.839 (0.888)	1 (1.00)
IGSF21	3 (1%)	286	0.391 (0.506)	0.62 (0.703)			0.359 (0.477)	0.43 (0.541)	0.329 (0.447)	0.529 (0.625)	0.403 (0.516)	0.563 (0.656)
TAS2R10	3 (1%)	286	0.631 (0.711)	0.151 (0.265)			0.709 (0.778)	0.475 (0.576)	0.33 (0.448)	0.24 (0.36)
NBN	13 (4%)	276	0.245 (0.365)	0.196 (0.313)	0.264 (0.385)	0.674 (0.749)	0.733 (0.799)	0.129 (0.24)	0.17 (0.288)	0.824 (0.874)	0.155 (0.27)	0.0945 (0.199)
PHACTR1	9 (3%)	280	0.0556 (0.145)	0.349 (0.467)	0.0935 (0.198)	0.0836 (0.184)	0.0959 (0.201)	0.116 (0.226)	0.182 (0.299)	0.38 (0.496)	0.95 (0.982)	0.37 (0.486)
WNT9A	8 (3%)	281	0.289 (0.409)	0.136 (0.248)	0.449 (0.556)	0.676 (0.75)	0.314 (0.433)	0.386 (0.501)	0.424 (0.535)	0.631 (0.711)	0.245 (0.365)	0.12 (0.231)
PPARG	4 (1%)	285	0.2 (0.318)		0.211 (0.33)	0.365 (0.483)	0.356 (0.473)	0.372 (0.488)	0.121 (0.232)	0.0629 (0.155)
LARP7	3 (1%)	286	1 (1.00)	0.694 (0.767)	0.421 (0.534)	0.366 (0.484)	0.712 (0.781)	0.231 (0.35)	0.46 (0.564)	0.102 (0.208)	0.744 (0.808)	0.563 (0.656)
KIF6	7 (2%)	282	0.223 (0.342)	0.421 (0.534)	0.449 (0.556)	0.37 (0.486)	0.198 (0.316)	0.158 (0.274)	0.336 (0.453)	0.0636 (0.156)	0.819 (0.87)	0.812 (0.864)
IFNA17	4 (1%)	285	1 (1.00)	0.477 (0.578)	0.167 (0.285)	1 (1.00)	0.706 (0.776)	0.371 (0.487)	0.561 (0.655)	0.651 (0.729)	0.832 (0.881)	0.563 (0.656)
TIMP3	6 (2%)	283	0.475 (0.576)	0.419 (0.532)	0.4 (0.514)	0.247 (0.367)	0.664 (0.739)	0.354 (0.472)	0.669 (0.744)	0.167 (0.284)	0.161 (0.278)	0.131 (0.241)
CD3EAP	7 (2%)	282	0.0766 (0.175)	0.282 (0.402)	0.265 (0.386)	0.251 (0.37)	0.229 (0.348)	0.192 (0.31)	0.438 (0.547)	0.0817 (0.181)	0.524 (0.621)	0.634 (0.713)
PARP15	4 (1%)	285	0.472 (0.574)	0.535 (0.631)	0.691 (0.764)	0.819 (0.87)	0.0991 (0.205)	0.223 (0.342)	0.56 (0.654)	0.318 (0.436)	0.479 (0.58)	1 (1.00)
TRIP11	13 (4%)	276	0.413 (0.526)	0.435 (0.545)	0.204 (0.323)	0.388 (0.503)	0.551 (0.646)	0.202 (0.321)	0.765 (0.824)	0.979 (1.00)	0.615 (0.698)	0.545 (0.64)
BCL2L14	3 (1%)	286	1 (1.00)		1 (1.00)	0.423 (0.535)	0.0855 (0.186)	0.0695 (0.165)	0.794 (0.849)	0.0522 (0.139)
CDX2	3 (1%)	286	0.63 (0.71)		0.308 (0.428)	0.425 (0.536)	0.667 (0.742)	0.323 (0.442)	0.329 (0.447)	0.238 (0.358)
SLC7A10	5 (2%)	284	0.476 (0.577)	0.109 (0.217)	0.397 (0.512)	0.903 (0.943)	0.202 (0.321)	0.602 (0.687)	0.306 (0.426)	0.276 (0.397)	0.284 (0.404)	0.289 (0.409)
RGS2	3 (1%)	286	0.631 (0.711)		0.42 (0.534)	0.267 (0.387)	0.867 (0.913)	0.459 (0.563)	0.798 (0.851)	0.102 (0.208)
BTNL8	6 (2%)	283	0.943 (0.976)	0.757 (0.817)	0.0641 (0.156)	0.926 (0.962)	0.126 (0.237)	0.585 (0.672)	0.579 (0.668)	0.54 (0.636)	0.96 (0.991)	0.633 (0.713)
AP3M2	10 (3%)	279	0.11 (0.219)	0.509 (0.608)	0.101 (0.208)	0.0825 (0.182)	0.0867 (0.188)	0.392 (0.506)	0.0585 (0.149)	0.0556 (0.145)	0.69 (0.764)	0.292 (0.412)
KLHDC8B	8 (3%)	281	0.661 (0.737)	0.114 (0.223)	0.824 (0.874)	0.918 (0.955)	0.627 (0.708)	0.586 (0.673)	0.169 (0.287)	0.892 (0.934)	0.959 (0.99)	0.269 (0.389)
FOLH1	11 (4%)	278	0.389 (0.504)	0.498 (0.598)	0.437 (0.546)	0.438 (0.547)	0.583 (0.671)	0.779 (0.837)	1 (1.00)	0.357 (0.475)	0.398 (0.512)	0.898 (0.938)
SFTPC	3 (1%)	286	0.393 (0.508)	0.148 (0.262)	0.422 (0.534)	0.179 (0.296)	0.392 (0.506)	0.688 (0.762)	0.33 (0.448)	0.241 (0.361)	0.403 (0.516)	0.565 (0.657)
CD1E	7 (2%)	282	0.708 (0.777)	0.815 (0.866)	0.898 (0.938)	0.635 (0.713)	0.294 (0.414)	0.175 (0.292)	0.614 (0.697)	0.448 (0.556)	0.154 (0.269)	0.492 (0.592)
SCN10A	28 (10%)	261	0.27 (0.39)	0.51 (0.608)	0.298 (0.417)	0.34 (0.458)	0.145 (0.26)	0.154 (0.269)	0.121 (0.231)	0.718 (0.785)	0.571 (0.662)	0.902 (0.941)
CBLN3	5 (2%)	284	0.126 (0.237)	0.38 (0.496)	0.167 (0.285)	0.247 (0.367)	0.164 (0.282)	0.432 (0.543)	0.202 (0.321)	0.0815 (0.181)	0.571 (0.662)	0.192 (0.31)
STK36	10 (3%)	279	0.449 (0.556)	0.871 (0.917)	0.701 (0.771)	0.331 (0.448)	0.234 (0.354)	0.238 (0.358)	0.342 (0.46)	0.201 (0.32)	0.512 (0.61)	0.0646 (0.157)
AFP	3 (1%)	286	0.545 (0.64)		0.21 (0.329)	1 (1.00)			0.606 (0.69)	0.698 (0.769)
GPX6	4 (1%)	285	0.903 (0.942)	0.628 (0.709)	1 (1.00)	0.315 (0.433)	0.357 (0.475)	0.428 (0.539)	0.216 (0.335)	0.763 (0.822)	0.573 (0.663)	0.755 (0.816)
CASP1	4 (1%)	285	0.812 (0.864)	0.623 (0.705)	0.0772 (0.176)	0.614 (0.697)	0.555 (0.649)	0.937 (0.971)	0.354 (0.472)	0.431 (0.542)	0.48 (0.581)	0.635 (0.714)
PIK3C2G	10 (3%)	279	0.125 (0.236)	0.063 (0.155)	0.399 (0.512)	0.256 (0.376)	0.0657 (0.159)	0.0825 (0.182)	0.0567 (0.146)	0.118 (0.229)	0.421 (0.534)	0.178 (0.295)
TOX	9 (3%)	280	0.685 (0.759)	0.343 (0.461)	0.599 (0.685)	0.64 (0.718)	0.788 (0.845)	0.584 (0.672)	0.837 (0.886)	0.696 (0.768)	0.87 (0.916)	0.154 (0.269)
SP6	3 (1%)	286	0.544 (0.64)	0.151 (0.265)	0.211 (0.33)	0.142 (0.256)			0.326 (0.445)	0.24 (0.36)	0.88 (0.923)	0.567 (0.659)
CHST9	6 (2%)	283	0.407 (0.52)	0.224 (0.343)	0.451 (0.556)	0.124 (0.234)	0.661 (0.737)	0.902 (0.941)	0.579 (0.668)	0.26 (0.381)	0.178 (0.295)	0.755 (0.816)
TAC4	3 (1%)	286	0.629 (0.71)	0.618 (0.701)			0.621 (0.703)	0.222 (0.342)	0.329 (0.447)	0.241 (0.361)
FAM82A1	4 (1%)	285	0.333 (0.451)		0.4 (0.514)	0.269 (0.389)	0.165 (0.282)	0.375 (0.491)	0.12 (0.23)	0.839 (0.888)
KRT222	5 (2%)	284	0.388 (0.503)	0.859 (0.907)	0.0772 (0.176)	0.247 (0.367)	0.705 (0.775)	0.0722 (0.169)	0.203 (0.321)	0.137 (0.249)	0.881 (0.924)	0.566 (0.657)

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TP53 MUTATED	60	28	17	24	6
TP53 WILD-TYPE	19	98	10	19	6

Figure S1. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S2. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TP53 MUTATED	53	38	7	21
TP53 WILD-TYPE	18	38	27	42

Figure S2. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.56

Table S3. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TP53 MUTATED	41	37	39
TP53 WILD-TYPE	37	49	46

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S4. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TP53 MUTATED	19	39	23	36
TP53 WILD-TYPE	14	39	28	51

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S5. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TP53 MUTATED	24	17	16	18	43
TP53 WILD-TYPE	41	42	26	16	14

Figure S3. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S6. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TP53 MUTATED	20	1	13	23	27	26	8
TP53 WILD-TYPE	16	20	35	33	12	11	12

Figure S4. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S7. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TP53 MUTATED	56	33	48
TP53 WILD-TYPE	70	63	19

Figure S5. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S8. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TP53 MUTATED	30	35	21	51
TP53 WILD-TYPE	26	70	39	17

Figure S6. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 0.18

Table S9. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TP53 MUTATED	24	6	27	19	11	18
TP53 WILD-TYPE	10	12	32	19	8	25

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00103 (Fisher's exact test), Q value = 0.013

Table S10. Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TP53 MUTATED	69	14	22
TP53 WILD-TYPE	53	37	16

Figure S7. Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S11. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARID1A MUTATED	3	64	8	11	3
ARID1A WILD-TYPE	76	62	19	32	9

Figure S8. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S12. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARID1A MUTATED	8	34	20	12
ARID1A WILD-TYPE	63	42	14	51

Figure S9. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0063

Table S13. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ARID1A MUTATED	38	18	21
ARID1A WILD-TYPE	40	68	64

Figure S10. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S14. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ARID1A MUTATED	15	14	27	21
ARID1A WILD-TYPE	18	64	24	66

Figure S11. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S15. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ARID1A MUTATED	40	19	11	7	5
ARID1A WILD-TYPE	25	40	31	27	52

Figure S12. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S16. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ARID1A MUTATED	11	13	9	20	10	4	15
ARID1A WILD-TYPE	25	8	39	36	29	33	5

Figure S13. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S17. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ARID1A MUTATED	59	23	8
ARID1A WILD-TYPE	67	73	59

Figure S14. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S18. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ARID1A MUTATED	31	35	14	10
ARID1A WILD-TYPE	25	70	46	58

Figure S15. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.16

Table S19. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ARID1A MUTATED	7	8	22	13	2	9
ARID1A WILD-TYPE	27	10	37	25	17	34

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0064 (Fisher's exact test), Q value = 0.039

Table S20. Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ARID1A MUTATED	32	10	19
ARID1A WILD-TYPE	90	41	19

Figure S16. Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S21. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RNF43 MUTATED	1	37	5	3	2
RNF43 WILD-TYPE	78	89	22	40	10

Figure S17. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S22. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RNF43 MUTATED	1	27	6	3
RNF43 WILD-TYPE	70	49	28	60

Figure S18. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00238 (Fisher's exact test), Q value = 0.022

Table S23. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RNF43 MUTATED	22	7	13
RNF43 WILD-TYPE	56	79	72

Figure S19. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.0083

Table S24. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RNF43 MUTATED	7	10	18	7
RNF43 WILD-TYPE	26	68	33	80

Figure S20. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S25. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RNF43 MUTATED	22	2	4	11	1
RNF43 WILD-TYPE	43	57	38	23	56

Figure S21. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S26. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RNF43 MUTATED	5	0	0	10	10	1	14
RNF43 WILD-TYPE	31	21	48	46	29	36	6

Figure S22. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S27. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RNF43 MUTATED	40	6	3
RNF43 WILD-TYPE	86	90	64

Figure S23. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S28. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RNF43 MUTATED	27	17	4	1
RNF43 WILD-TYPE	29	88	56	67

Figure S24. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00312 (Fisher's exact test), Q value = 0.026

Table S29. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RNF43 MUTATED	5	5	11	10	0	1
RNF43 WILD-TYPE	29	13	48	28	19	42

Figure S25. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.0087

Table S30. Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RNF43 MUTATED	17	2	13
RNF43 WILD-TYPE	105	49	25

Figure S26. Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.0086

Table S31. Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LARP4B MUTATED	1	22	2	1	1
LARP4B WILD-TYPE	78	104	25	42	11

Figure S27. Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LARP4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S32. Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LARP4B MUTATED	2	16	0	1
LARP4B WILD-TYPE	69	60	34	62

Figure S28. Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LARP4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.0066

Table S33. Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LARP4B MUTATED	16	2	6
LARP4B WILD-TYPE	62	84	79

Figure S29. Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LARP4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00165 (Fisher's exact test), Q value = 0.018

Table S34. Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LARP4B MUTATED	4	5	12	3
LARP4B WILD-TYPE	29	73	39	84

Figure S30. Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00455 (Fisher's exact test), Q value = 0.032

Table S35. Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LARP4B MUTATED	13	3	2	4	1
LARP4B WILD-TYPE	52	56	40	30	56

Figure S31. Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LARP4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0035

Table S36. Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LARP4B MUTATED	6	0	0	3	7	1	6
LARP4B WILD-TYPE	30	21	48	53	32	36	14

Figure S32. Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00118 (Fisher's exact test), Q value = 0.014

Table S37. Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LARP4B MUTATED	21	4	2
LARP4B WILD-TYPE	105	92	65

Figure S33. Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S38. Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LARP4B MUTATED	15	9	2	1
LARP4B WILD-TYPE	41	96	58	67

Figure S34. Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.34

Table S39. Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LARP4B MUTATED	5	2	7	4	0	1
LARP4B WILD-TYPE	29	16	52	34	19	42

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.074

Table S40. Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LARP4B MUTATED	9	2	8
LARP4B WILD-TYPE	113	49	30

Figure S35. Get High-res Image Gene #4: 'LARP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.005

Table S41. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
XYLT2 MUTATED	1	25	1	3	1
XYLT2 WILD-TYPE	78	101	26	40	11

Figure S36. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'XYLT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S42. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
XYLT2 MUTATED	2	22	5	1
XYLT2 WILD-TYPE	69	54	29	62

Figure S37. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'XYLT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00384 (Fisher's exact test), Q value = 0.029

Table S43. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
XYLT2 MUTATED	16	4	7
XYLT2 WILD-TYPE	62	82	78

Figure S38. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'XYLT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00865 (Fisher's exact test), Q value = 0.048

Table S44. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
XYLT2 MUTATED	6	4	11	6
XYLT2 WILD-TYPE	27	74	40	81

Figure S39. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0038

Table S45. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
XYLT2 MUTATED	18	3	2	4	2
XYLT2 WILD-TYPE	47	56	40	30	55

Figure S40. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S46. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
XYLT2 MUTATED	5	0	1	4	7	1	11
XYLT2 WILD-TYPE	31	21	47	52	32	36	9

Figure S41. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.012

Table S47. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
XYLT2 MUTATED	24	5	3
XYLT2 WILD-TYPE	102	91	64

Figure S42. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S48. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
XYLT2 MUTATED	17	12	2	1
XYLT2 WILD-TYPE	39	93	58	67

Figure S43. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00827 (Fisher's exact test), Q value = 0.047

Table S49. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
XYLT2 MUTATED	3	3	9	10	0	1
XYLT2 WILD-TYPE	31	15	50	28	19	42

Figure S44. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00257 (Fisher's exact test), Q value = 0.023

Table S50. Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
XYLT2 MUTATED	13	2	11
XYLT2 WILD-TYPE	109	49	27

Figure S45. Get High-res Image Gene #5: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0048

Table S51. Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
B2M MUTATED	0	16	0	0	0
B2M WILD-TYPE	79	110	27	43	12

Figure S46. Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'B2M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00265 (Fisher's exact test), Q value = 0.024

Table S52. Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
B2M MUTATED	1	11	3	1
B2M WILD-TYPE	70	65	31	62

Figure S47. Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'B2M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.1

Table S53. Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
B2M MUTATED	8	1	4
B2M WILD-TYPE	70	85	81

Figure S48. Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'B2M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0255 (Fisher's exact test), Q value = 0.09

Table S54. Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
B2M MUTATED	2	2	7	2
B2M WILD-TYPE	31	76	44	85

Figure S49. Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.009

Table S55. Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
B2M MUTATED	11	1	1	2	0
B2M WILD-TYPE	54	58	41	32	57

Figure S50. Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'B2M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00332 (Fisher's exact test), Q value = 0.027

Table S56. Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
B2M MUTATED	2	1	0	3	4	0	5
B2M WILD-TYPE	34	20	48	53	35	37	15

Figure S51. Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0024 (Fisher's exact test), Q value = 0.022

Table S57. Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
B2M MUTATED	14	3	0
B2M WILD-TYPE	112	93	67

Figure S52. Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'B2M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.0083

Table S58. Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
B2M MUTATED	10	5	2	0
B2M WILD-TYPE	46	100	58	68

Figure S53. Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.42

Table S59. Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
B2M MUTATED	2	2	6	5	0	1
B2M WILD-TYPE	32	16	53	33	19	42

'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0315 (Fisher's exact test), Q value = 0.1

Table S60. Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
B2M MUTATED	7	2	7
B2M WILD-TYPE	115	49	31

Figure S54. Get High-res Image Gene #6: 'B2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BZRAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S61. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BZRAP1 MUTATED	8	28	4	6	0
BZRAP1 WILD-TYPE	71	98	23	37	12

'BZRAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.35

Table S62. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BZRAP1 MUTATED	10	11	10	12
BZRAP1 WILD-TYPE	61	65	24	51

'BZRAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.75

Table S63. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BZRAP1 MUTATED	13	13	10
BZRAP1 WILD-TYPE	65	73	75

'BZRAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 0.91

Table S64. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BZRAP1 MUTATED	5	11	9	11
BZRAP1 WILD-TYPE	28	67	42	76

'BZRAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.092

Table S65. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BZRAP1 MUTATED	18	10	6	2	5
BZRAP1 WILD-TYPE	47	49	36	32	52

Figure S55. Get High-res Image Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BZRAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0502 (Fisher's exact test), Q value = 0.13

Table S66. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BZRAP1 MUTATED	10	5	8	6	3	3	6
BZRAP1 WILD-TYPE	26	16	40	50	36	34	14

'BZRAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 0.99

Table S67. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BZRAP1 MUTATED	21	15	10
BZRAP1 WILD-TYPE	105	81	57

'BZRAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.33

Table S68. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BZRAP1 MUTATED	6	23	7	10
BZRAP1 WILD-TYPE	50	82	53	58

'BZRAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.38

Table S69. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BZRAP1 MUTATED	5	1	8	10	5	5
BZRAP1 WILD-TYPE	29	17	51	28	14	38

'BZRAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.26

Table S70. Gene #7: 'BZRAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BZRAP1 MUTATED	25	5	4
BZRAP1 WILD-TYPE	97	46	34

'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.25

Table S71. Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KRAS MUTATED	4	16	2	3	3
KRAS WILD-TYPE	75	110	25	40	9

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.53

Table S72. Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KRAS MUTATED	4	10	2	5
KRAS WILD-TYPE	67	66	32	58

'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 0.84

Table S73. Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KRAS MUTATED	10	8	8
KRAS WILD-TYPE	68	78	77

'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.34

Table S74. Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KRAS MUTATED	4	5	9	8
KRAS WILD-TYPE	29	73	42	79

'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.32

Table S75. Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KRAS MUTATED	10	4	3	4	2
KRAS WILD-TYPE	55	55	39	30	55

'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.055

Table S76. Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KRAS MUTATED	6	0	1	5	5	1	5
KRAS WILD-TYPE	30	21	47	51	34	36	15

Figure S56. Get High-res Image Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.3

Table S77. Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KRAS MUTATED	17	7	4
KRAS WILD-TYPE	109	89	63

'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.28

Table S78. Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KRAS MUTATED	10	9	5	4
KRAS WILD-TYPE	46	96	55	64

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.44

Table S79. Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KRAS MUTATED	4	1	3	2	4	3
KRAS WILD-TYPE	30	17	56	36	15	40

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 0.97

Table S80. Gene #8: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KRAS MUTATED	11	3	3
KRAS WILD-TYPE	111	48	35

'MLL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S81. Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MLL2 MUTATED	5	48	3	4	4
MLL2 WILD-TYPE	74	78	24	39	8

Figure S57. Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S82. Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MLL2 MUTATED	3	31	11	4
MLL2 WILD-TYPE	68	45	23	59

Figure S58. Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S83. Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MLL2 MUTATED	36	6	15
MLL2 WILD-TYPE	42	80	70

Figure S59. Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S84. Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MLL2 MUTATED	13	13	24	7
MLL2 WILD-TYPE	20	65	27	80

Figure S60. Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S85. Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MLL2 MUTATED	32	6	7	7	5
MLL2 WILD-TYPE	33	53	35	27	52

Figure S61. Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S86. Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MLL2 MUTATED	10	4	1	13	12	2	15
MLL2 WILD-TYPE	26	17	47	43	27	35	5

Figure S62. Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S87. Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MLL2 MUTATED	52	5	8
MLL2 WILD-TYPE	74	91	59

Figure S63. Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S88. Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MLL2 MUTATED	29	26	4	6
MLL2 WILD-TYPE	27	79	56	62

Figure S64. Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.0072

Table S89. Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MLL2 MUTATED	5	6	18	11	0	2
MLL2 WILD-TYPE	29	12	41	27	19	41

Figure S65. Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S90. Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MLL2 MUTATED	21	3	18
MLL2 WILD-TYPE	101	48	20

Figure S66. Get High-res Image Gene #9: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.18

Table S91. Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GNG12 MUTATED	0	8	1	1	1
GNG12 WILD-TYPE	79	118	26	42	11

'GNG12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.23

Table S92. Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GNG12 MUTATED	0	4	2	1
GNG12 WILD-TYPE	71	72	32	62

'GNG12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.12

Table S93. Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GNG12 MUTATED	7	1	2
GNG12 WILD-TYPE	71	85	83

Figure S67. Get High-res Image Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GNG12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 0.11

Table S94. Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GNG12 MUTATED	0	2	6	2
GNG12 WILD-TYPE	33	76	45	85

Figure S68. Get High-res Image Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00227 (Fisher's exact test), Q value = 0.022

Table S95. Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GNG12 MUTATED	8	1	0	1	0
GNG12 WILD-TYPE	57	58	42	33	57

Figure S69. Get High-res Image Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GNG12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0344 (Fisher's exact test), Q value = 0.11

Table S96. Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GNG12 MUTATED	3	0	0	2	2	0	3
GNG12 WILD-TYPE	33	21	48	54	37	37	17

Figure S70. Get High-res Image Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00385 (Fisher's exact test), Q value = 0.029

Table S97. Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GNG12 MUTATED	10	0	1
GNG12 WILD-TYPE	116	96	66

Figure S71. Get High-res Image Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.012

Table S98. Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GNG12 MUTATED	7	4	0	0
GNG12 WILD-TYPE	49	101	60	68

Figure S72. Get High-res Image Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.67

Table S99. Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GNG12 MUTATED	1	1	3	2	0	0
GNG12 WILD-TYPE	33	17	56	36	19	43

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.24

Table S100. Gene #10: 'GNG12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GNG12 MUTATED	4	0	3
GNG12 WILD-TYPE	118	51	35

'LMAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00233 (Fisher's exact test), Q value = 0.022

Table S101. Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LMAN1 MUTATED	0	17	2	2	1
LMAN1 WILD-TYPE	79	109	25	41	11

Figure S73. Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LMAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.064

Table S102. Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LMAN1 MUTATED	1	11	3	3
LMAN1 WILD-TYPE	70	65	31	60

Figure S74. Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LMAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S103. Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LMAN1 MUTATED	10	5	4
LMAN1 WILD-TYPE	68	81	81

'LMAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00612 (Fisher's exact test), Q value = 0.038

Table S104. Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LMAN1 MUTATED	6	4	7	2
LMAN1 WILD-TYPE	27	74	44	85

Figure S75. Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.0069

Table S105. Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LMAN1 MUTATED	11	1	2	5	0
LMAN1 WILD-TYPE	54	58	40	29	57

Figure S76. Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LMAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S106. Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LMAN1 MUTATED	4	0	0	3	4	0	8
LMAN1 WILD-TYPE	32	21	48	53	35	37	12

Figure S77. Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0038

Table S107. Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LMAN1 MUTATED	19	2	1
LMAN1 WILD-TYPE	107	94	66

Figure S78. Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.0087

Table S108. Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LMAN1 MUTATED	10	10	2	0
LMAN1 WILD-TYPE	46	95	58	68

Figure S79. Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.37

Table S109. Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LMAN1 MUTATED	3	3	6	2	0	1
LMAN1 WILD-TYPE	31	15	53	36	19	42

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00338 (Fisher's exact test), Q value = 0.027

Table S110. Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LMAN1 MUTATED	5	2	8
LMAN1 WILD-TYPE	117	49	30

Figure S80. Get High-res Image Gene #11: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0043

Table S111. Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDH1 MUTATED	0	22	3	3	0
CDH1 WILD-TYPE	79	104	24	40	12

Figure S81. Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0037

Table S112. Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDH1 MUTATED	2	7	0	15
CDH1 WILD-TYPE	69	69	34	48

Figure S82. Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.11

Table S113. Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CDH1 MUTATED	6	16	6
CDH1 WILD-TYPE	72	70	79

Figure S83. Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.78

Table S114. Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CDH1 MUTATED	2	9	5	12
CDH1 WILD-TYPE	31	69	46	75

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00383 (Fisher's exact test), Q value = 0.029

Table S115. Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CDH1 MUTATED	4	14	2	4	2
CDH1 WILD-TYPE	61	45	40	30	55

Figure S84. Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0037

Table S116. Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CDH1 MUTATED	1	0	15	4	4	1	1
CDH1 WILD-TYPE	35	21	33	52	35	36	19

Figure S85. Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00189 (Fisher's exact test), Q value = 0.019

Table S117. Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CDH1 MUTATED	11	17	1
CDH1 WILD-TYPE	115	79	66

Figure S86. Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.0054

Table S118. Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CDH1 MUTATED	7	7	14	1
CDH1 WILD-TYPE	49	98	46	67

Figure S87. Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00791 (Fisher's exact test), Q value = 0.045

Table S119. Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CDH1 MUTATED	0	2	6	2	3	11
CDH1 WILD-TYPE	34	16	53	36	16	32

Figure S88. Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.054

Table S120. Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CDH1 MUTATED	10	12	2
CDH1 WILD-TYPE	112	39	36

Figure S89. Get High-res Image Gene #12: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00943 (Fisher's exact test), Q value = 0.05

Table S121. Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLEKHA6 MUTATED	1	16	0	2	0
PLEKHA6 WILD-TYPE	78	110	27	41	12

Figure S90. Get High-res Image Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.1

Table S122. Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLEKHA6 MUTATED	1	10	2	3
PLEKHA6 WILD-TYPE	70	66	32	60

Figure S91. Get High-res Image Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00211 (Fisher's exact test), Q value = 0.021

Table S123. Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PLEKHA6 MUTATED	13	2	4
PLEKHA6 WILD-TYPE	65	84	81

Figure S92. Get High-res Image Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.32

Table S124. Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PLEKHA6 MUTATED	3	3	7	6
PLEKHA6 WILD-TYPE	30	75	44	81

'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 0.15

Table S125. Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PLEKHA6 MUTATED	9	3	1	3	1
PLEKHA6 WILD-TYPE	56	56	41	31	56

'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 0.092

Table S126. Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PLEKHA6 MUTATED	5	0	1	2	4	1	4
PLEKHA6 WILD-TYPE	31	21	47	54	35	36	16

Figure S93. Get High-res Image Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0031 (Fisher's exact test), Q value = 0.026

Table S127. Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PLEKHA6 MUTATED	16	2	2
PLEKHA6 WILD-TYPE	110	94	65

Figure S94. Get High-res Image Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.087

Table S128. Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PLEKHA6 MUTATED	9	7	1	3
PLEKHA6 WILD-TYPE	47	98	59	65

Figure S95. Get High-res Image Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.33

Table S129. Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PLEKHA6 MUTATED	4	1	6	3	2	0
PLEKHA6 WILD-TYPE	30	17	53	35	17	43

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.079

Table S130. Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PLEKHA6 MUTATED	11	0	5
PLEKHA6 WILD-TYPE	111	51	33

Figure S96. Get High-res Image Gene #13: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RHOA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S131. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RHOA MUTATED	1	12	1	2	0
RHOA WILD-TYPE	78	114	26	41	12

'RHOA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.54

Table S132. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RHOA MUTATED	2	4	2	6
RHOA WILD-TYPE	69	72	32	57

'RHOA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S133. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RHOA MUTATED	4	5	5
RHOA WILD-TYPE	74	81	80

'RHOA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.78

Table S134. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RHOA MUTATED	3	5	2	4
RHOA WILD-TYPE	30	73	49	83

'RHOA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.45

Table S135. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RHOA MUTATED	3	4	2	4	1
RHOA WILD-TYPE	62	55	40	30	56

'RHOA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S136. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RHOA MUTATED	2	1	4	3	2	1	1
RHOA WILD-TYPE	34	20	44	53	37	36	19

'RHOA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.12

Table S137. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RHOA MUTATED	5	10	1
RHOA WILD-TYPE	121	86	66

Figure S97. Get High-res Image Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RHOA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0892 (Fisher's exact test), Q value = 0.19

Table S138. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RHOA MUTATED	1	9	5	1
RHOA WILD-TYPE	55	96	55	67

'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.13

Table S139. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RHOA MUTATED	0	3	3	0	1	4
RHOA WILD-TYPE	34	15	56	38	18	39

Figure S98. Get High-res Image Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.39

Table S140. Gene #14: 'RHOA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RHOA MUTATED	5	5	1
RHOA WILD-TYPE	117	46	37

'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.49

Table S141. Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SMAD4 MUTATED	5	10	2	7	0
SMAD4 WILD-TYPE	74	116	25	36	12

'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 0.86

Table S142. Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SMAD4 MUTATED	4	7	3	6
SMAD4 WILD-TYPE	67	69	31	57

'SMAD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 0.1

Table S143. Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SMAD4 MUTATED	10	8	2
SMAD4 WILD-TYPE	68	78	83

Figure S99. Get High-res Image Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SMAD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.24

Table S144. Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SMAD4 MUTATED	3	2	5	10
SMAD4 WILD-TYPE	30	76	46	77

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00847 (Fisher's exact test), Q value = 0.047

Table S145. Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SMAD4 MUTATED	7	3	7	4	0
SMAD4 WILD-TYPE	58	56	35	30	57

Figure S100. Get High-res Image Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.46

Table S146. Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SMAD4 MUTATED	4	2	3	5	5	0	2
SMAD4 WILD-TYPE	32	19	45	51	34	37	18

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.11

Table S147. Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SMAD4 MUTATED	12	11	1
SMAD4 WILD-TYPE	114	85	66

Figure S101. Get High-res Image Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.5

Table S148. Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SMAD4 MUTATED	7	8	6	3
SMAD4 WILD-TYPE	49	97	54	65

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 0.18

Table S149. Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SMAD4 MUTATED	1	1	4	8	0	3
SMAD4 WILD-TYPE	33	17	55	30	19	40

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.48

Table S150. Gene #15: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SMAD4 MUTATED	8	4	5
SMAD4 WILD-TYPE	114	47	33

'MTG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.19

Table S151. Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MTG1 MUTATED	0	6	2	0	0
MTG1 WILD-TYPE	79	120	25	43	12

'MTG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.065

Table S152. Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MTG1 MUTATED	0	5	2	0
MTG1 WILD-TYPE	71	71	32	63

Figure S102. Get High-res Image Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MTG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.11

Table S153. Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MTG1 MUTATED	6	1	1
MTG1 WILD-TYPE	72	85	84

Figure S103. Get High-res Image Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MTG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.17

Table S154. Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MTG1 MUTATED	2	1	4	1
MTG1 WILD-TYPE	31	77	47	86

'MTG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.44

Table S155. Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MTG1 MUTATED	4	1	1	1	0
MTG1 WILD-TYPE	61	58	41	33	57

'MTG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.21

Table S156. Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MTG1 MUTATED	0	0	1	1	3	0	2
MTG1 WILD-TYPE	36	21	47	55	36	37	18

'MTG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.4

Table S157. Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MTG1 MUTATED	6	1	2
MTG1 WILD-TYPE	120	95	65

'MTG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0548 (Fisher's exact test), Q value = 0.14

Table S158. Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MTG1 MUTATED	5	1	1	2
MTG1 WILD-TYPE	51	104	59	66

'MTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.56

Table S159. Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MTG1 MUTATED	1	2	1	1	0	1
MTG1 WILD-TYPE	33	16	58	37	19	42

'MTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.058

Table S160. Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MTG1 MUTATED	1	1	4
MTG1 WILD-TYPE	121	50	34

Figure S104. Get High-res Image Gene #16: 'MTG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.079

Table S161. Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KLF3 MUTATED	2	14	3	0	0
KLF3 WILD-TYPE	77	112	24	43	12

Figure S105. Get High-res Image Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.0092

Table S162. Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KLF3 MUTATED	2	12	3	0
KLF3 WILD-TYPE	69	64	31	63

Figure S106. Get High-res Image Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KLF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.005

Table S163. Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KLF3 MUTATED	12	1	2
KLF3 WILD-TYPE	66	85	83

Figure S107. Get High-res Image Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KLF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.088

Table S164. Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KLF3 MUTATED	1	2	8	4
KLF3 WILD-TYPE	32	76	43	83

Figure S108. Get High-res Image Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.13

Table S165. Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KLF3 MUTATED	9	2	2	4	1
KLF3 WILD-TYPE	56	57	40	30	56

Figure S109. Get High-res Image Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KLF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.0086

Table S166. Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KLF3 MUTATED	1	0	2	4	4	0	7
KLF3 WILD-TYPE	35	21	46	52	35	37	13

Figure S110. Get High-res Image Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.37

Table S167. Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KLF3 MUTATED	12	4	3
KLF3 WILD-TYPE	114	92	64

'KLF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00717 (Fisher's exact test), Q value = 0.042

Table S168. Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KLF3 MUTATED	10	4	2	3
KLF3 WILD-TYPE	46	101	58	65

Figure S111. Get High-res Image Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.52

Table S169. Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KLF3 MUTATED	2	3	4	5	0	3
KLF3 WILD-TYPE	32	15	55	33	19	40

'KLF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.4

Table S170. Gene #17: 'KLF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KLF3 MUTATED	10	2	5
KLF3 WILD-TYPE	112	49	33

'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00087 (Fisher's exact test), Q value = 0.012

Table S171. Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTCF MUTATED	1	17	0	0	0
CTCF WILD-TYPE	78	109	27	43	12

Figure S112. Get High-res Image Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.072

Table S172. Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTCF MUTATED	0	8	3	5
CTCF WILD-TYPE	71	68	31	58

Figure S113. Get High-res Image Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTCF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.22

Table S173. Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CTCF MUTATED	8	5	2
CTCF WILD-TYPE	70	81	83

'CTCF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.32

Table S174. Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CTCF MUTATED	2	2	6	5
CTCF WILD-TYPE	31	76	45	82

'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00416 (Fisher's exact test), Q value = 0.03

Table S175. Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CTCF MUTATED	9	2	1	4	0
CTCF WILD-TYPE	56	57	41	30	57

Figure S114. Get High-res Image Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00078 (Fisher's exact test), Q value = 0.011

Table S176. Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CTCF MUTATED	5	0	1	1	4	0	5
CTCF WILD-TYPE	31	21	47	55	35	37	15

Figure S115. Get High-res Image Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00338 (Fisher's exact test), Q value = 0.027

Table S177. Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CTCF MUTATED	14	4	0
CTCF WILD-TYPE	112	92	67

Figure S116. Get High-res Image Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.1

Table S178. Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CTCF MUTATED	6	8	4	0
CTCF WILD-TYPE	50	97	56	68

Figure S117. Get High-res Image Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.26

Table S179. Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CTCF MUTATED	3	0	4	6	0	1
CTCF WILD-TYPE	31	18	55	32	19	42

'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.38

Table S180. Gene #18: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CTCF MUTATED	9	1	4
CTCF WILD-TYPE	113	50	34

'ZBTB20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0041

Table S181. Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZBTB20 MUTATED	0	23	2	2	1
ZBTB20 WILD-TYPE	79	103	25	41	11

Figure S118. Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0029

Table S182. Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZBTB20 MUTATED	0	15	2	3
ZBTB20 WILD-TYPE	71	61	32	60

Figure S119. Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.065

Table S183. Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZBTB20 MUTATED	13	3	7
ZBTB20 WILD-TYPE	65	83	78

Figure S120. Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZBTB20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00865 (Fisher's exact test), Q value = 0.048

Table S184. Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZBTB20 MUTATED	5	4	10	4
ZBTB20 WILD-TYPE	28	74	41	83

Figure S121. Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S185. Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZBTB20 MUTATED	15	1	2	7	1
ZBTB20 WILD-TYPE	50	58	40	27	56

Figure S122. Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S186. Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZBTB20 MUTATED	4	1	0	5	7	0	9
ZBTB20 WILD-TYPE	32	20	48	51	32	37	11

Figure S123. Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S187. Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZBTB20 MUTATED	24	3	1
ZBTB20 WILD-TYPE	102	93	66

Figure S124. Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S188. Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZBTB20 MUTATED	16	10	1	1
ZBTB20 WILD-TYPE	40	95	59	67

Figure S125. Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0064 (Fisher's exact test), Q value = 0.039

Table S189. Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZBTB20 MUTATED	1	4	6	6	0	0
ZBTB20 WILD-TYPE	33	14	53	32	19	43

Figure S126. Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00278 (Fisher's exact test), Q value = 0.025

Table S190. Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZBTB20 MUTATED	10	0	7
ZBTB20 WILD-TYPE	112	51	31

Figure S127. Get High-res Image Gene #19: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GAS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S191. Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GAS6 MUTATED	3	9	1	2	1
GAS6 WILD-TYPE	76	117	26	41	11

'GAS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.066

Table S192. Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GAS6 MUTATED	2	9	0	1
GAS6 WILD-TYPE	69	67	34	62

Figure S128. Get High-res Image Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GAS6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.45

Table S193. Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GAS6 MUTATED	7	3	4
GAS6 WILD-TYPE	71	83	81

'GAS6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.41

Table S194. Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GAS6 MUTATED	0	5	5	4
GAS6 WILD-TYPE	33	73	46	83

'GAS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0903 (Fisher's exact test), Q value = 0.19

Table S195. Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GAS6 MUTATED	7	2	1	0	1
GAS6 WILD-TYPE	58	57	41	34	56

'GAS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.7

Table S196. Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GAS6 MUTATED	2	0	1	4	1	1	2
GAS6 WILD-TYPE	34	21	47	52	38	36	18

'GAS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0966 (Fisher's exact test), Q value = 0.2

Table S197. Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GAS6 MUTATED	11	2	3
GAS6 WILD-TYPE	115	94	64

'GAS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.34

Table S198. Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GAS6 MUTATED	6	5	1	4
GAS6 WILD-TYPE	50	100	59	64

'GAS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.28

Table S199. Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GAS6 MUTATED	2	3	3	2	1	0
GAS6 WILD-TYPE	32	15	56	36	18	43

'GAS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.32

Table S200. Gene #20: 'GAS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GAS6 MUTATED	6	1	4
GAS6 WILD-TYPE	116	50	34

'ATP6V1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0033 (Fisher's exact test), Q value = 0.027

Table S201. Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATP6V1B1 MUTATED	0	16	2	2	0
ATP6V1B1 WILD-TYPE	79	110	25	41	12

Figure S129. Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0063

Table S202. Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATP6V1B1 MUTATED	0	11	3	1
ATP6V1B1 WILD-TYPE	71	65	31	62

Figure S130. Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.14

Table S203. Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ATP6V1B1 MUTATED	9	2	4
ATP6V1B1 WILD-TYPE	69	84	81

'ATP6V1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.056

Table S204. Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ATP6V1B1 MUTATED	5	4	5	1
ATP6V1B1 WILD-TYPE	28	74	46	86

Figure S131. Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00177 (Fisher's exact test), Q value = 0.019

Table S205. Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ATP6V1B1 MUTATED	11	2	3	1	0
ATP6V1B1 WILD-TYPE	54	57	39	33	57

Figure S132. Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00772 (Fisher's exact test), Q value = 0.045

Table S206. Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ATP6V1B1 MUTATED	3	0	1	6	2	0	5
ATP6V1B1 WILD-TYPE	33	21	47	50	37	37	15

Figure S133. Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S207. Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ATP6V1B1 MUTATED	19	0	1
ATP6V1B1 WILD-TYPE	107	96	66

Figure S134. Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.0058

Table S208. Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ATP6V1B1 MUTATED	11	7	0	2
ATP6V1B1 WILD-TYPE	45	98	60	66

Figure S135. Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00677 (Fisher's exact test), Q value = 0.041

Table S209. Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ATP6V1B1 MUTATED	2	5	5	2	0	0
ATP6V1B1 WILD-TYPE	32	13	54	36	19	43

Figure S136. Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00946 (Fisher's exact test), Q value = 0.05

Table S210. Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ATP6V1B1 MUTATED	8	0	6
ATP6V1B1 WILD-TYPE	114	51	32

Figure S137. Get High-res Image Gene #21: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.01

Table S211. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PTEN MUTATED	2	18	0	0	2
PTEN WILD-TYPE	77	108	27	43	10

Figure S138. Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00158 (Fisher's exact test), Q value = 0.017

Table S212. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PTEN MUTATED	2	9	5	0
PTEN WILD-TYPE	69	67	29	63

Figure S139. Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.069

Table S213. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PTEN MUTATED	11	2	6
PTEN WILD-TYPE	67	84	79

Figure S140. Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.28

Table S214. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PTEN MUTATED	2	4	8	5
PTEN WILD-TYPE	31	74	43	82

'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0032

Table S215. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PTEN MUTATED	15	2	1	3	1
PTEN WILD-TYPE	50	57	41	31	56

Figure S141. Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.1

Table S216. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PTEN MUTATED	4	4	1	5	5	0	3
PTEN WILD-TYPE	32	17	47	51	34	37	17

Figure S142. Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.063

Table S217. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PTEN MUTATED	16	6	1
PTEN WILD-TYPE	110	90	66

Figure S143. Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00296 (Fisher's exact test), Q value = 0.026

Table S218. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PTEN MUTATED	11	8	3	1
PTEN WILD-TYPE	45	97	57	67

Figure S144. Get High-res Image Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 0.15

Table S219. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PTEN MUTATED	3	1	6	6	0	0
PTEN WILD-TYPE	31	17	53	32	19	43

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S220. Gene #22: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PTEN MUTATED	10	1	5
PTEN WILD-TYPE	112	50	33

'HLA-A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.11

Table S221. Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HLA-A MUTATED	1	11	2	0	1
HLA-A WILD-TYPE	78	115	25	43	11

Figure S145. Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.074

Table S222. Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HLA-A MUTATED	1	6	3	0
HLA-A WILD-TYPE	70	70	31	63

Figure S146. Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HLA-A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.17

Table S223. Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HLA-A MUTATED	8	2	3
HLA-A WILD-TYPE	70	84	82

'HLA-A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0045

Table S224. Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HLA-A MUTATED	5	2	6	0
HLA-A WILD-TYPE	28	76	45	87

Figure S147. Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00981 (Fisher's exact test), Q value = 0.051

Table S225. Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HLA-A MUTATED	9	1	0	3	2
HLA-A WILD-TYPE	56	58	42	31	55

Figure S148. Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HLA-A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0037

Table S226. Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HLA-A MUTATED	1	0	0	4	4	0	6
HLA-A WILD-TYPE	35	21	48	52	35	37	14

Figure S149. Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0039

Table S227. Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HLA-A MUTATED	14	0	1
HLA-A WILD-TYPE	112	96	66

Figure S150. Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.068

Table S228. Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HLA-A MUTATED	7	6	0	2
HLA-A WILD-TYPE	49	99	60	66

Figure S151. Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.36

Table S229. Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HLA-A MUTATED	1	2	3	3	0	0
HLA-A WILD-TYPE	33	16	56	35	19	43

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00134 (Fisher's exact test), Q value = 0.016

Table S230. Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HLA-A MUTATED	3	0	6
HLA-A WILD-TYPE	119	51	32

Figure S152. Get High-res Image Gene #23: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.0086

Table S231. Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FBXW7 MUTATED	2	23	1	1	0
FBXW7 WILD-TYPE	77	103	26	42	12

Figure S153. Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0045

Table S232. Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FBXW7 MUTATED	2	17	1	3
FBXW7 WILD-TYPE	69	59	33	60

Figure S154. Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FBXW7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.1

Table S233. Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FBXW7 MUTATED	13	4	7
FBXW7 WILD-TYPE	65	82	78

Figure S155. Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FBXW7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0177 (Fisher's exact test), Q value = 0.071

Table S234. Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FBXW7 MUTATED	5	4	10	5
FBXW7 WILD-TYPE	28	74	41	82

Figure S156. Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0029 (Fisher's exact test), Q value = 0.025

Table S235. Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FBXW7 MUTATED	14	3	1	3	2
FBXW7 WILD-TYPE	51	56	41	31	55

Figure S157. Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S236. Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FBXW7 MUTATED	4	0	2	2	3	2	10
FBXW7 WILD-TYPE	32	21	46	54	36	35	10

Figure S158. Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.066

Table S237. Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FBXW7 MUTATED	19	4	4
FBXW7 WILD-TYPE	107	92	63

Figure S159. Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0039

Table S238. Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FBXW7 MUTATED	15	6	3	3
FBXW7 WILD-TYPE	41	99	57	65

Figure S160. Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.16

Table S239. Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FBXW7 MUTATED	4	2	7	8	0	1
FBXW7 WILD-TYPE	30	16	52	30	19	42

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.11

Table S240. Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FBXW7 MUTATED	12	2	8
FBXW7 WILD-TYPE	110	49	30

Figure S161. Get High-res Image Gene #24: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.17

Table S241. Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MVK MUTATED	0	8	1	3	1
MVK WILD-TYPE	79	118	26	40	11

'MVK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.012

Table S242. Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MVK MUTATED	0	8	1	0
MVK WILD-TYPE	71	68	33	63

Figure S162. Get High-res Image Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MVK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 0.14

Table S243. Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MVK MUTATED	7	1	3
MVK WILD-TYPE	71	85	82

'MVK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S244. Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MVK MUTATED	2	1	8	0
MVK WILD-TYPE	31	77	43	87

Figure S163. Get High-res Image Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.22

Table S245. Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MVK MUTATED	7	1	1	1	1
MVK WILD-TYPE	58	58	41	33	56

'MVK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.053

Table S246. Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MVK MUTATED	1	1	0	2	3	0	4
MVK WILD-TYPE	35	20	48	54	36	37	16

Figure S164. Get High-res Image Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.066

Table S247. Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MVK MUTATED	11	1	1
MVK WILD-TYPE	115	95	66

Figure S165. Get High-res Image Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MVK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S248. Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MVK MUTATED	10	2	1	0
MVK WILD-TYPE	46	103	59	68

Figure S166. Get High-res Image Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.34

Table S249. Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MVK MUTATED	0	2	1	2	0	1
MVK WILD-TYPE	34	16	58	36	19	42

'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S250. Gene #25: 'MVK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MVK MUTATED	2	1	3
MVK WILD-TYPE	120	50	35

'FRMD4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.05 (Fisher's exact test), Q value = 0.13

Table S251. Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FRMD4A MUTATED	1	12	3	1	0
FRMD4A WILD-TYPE	78	114	24	42	12

'FRMD4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S252. Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FRMD4A MUTATED	0	13	2	1
FRMD4A WILD-TYPE	71	63	32	62

Figure S167. Get High-res Image Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FRMD4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00436 (Fisher's exact test), Q value = 0.031

Table S253. Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FRMD4A MUTATED	10	1	3
FRMD4A WILD-TYPE	68	85	82

Figure S168. Get High-res Image Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FRMD4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0746 (Fisher's exact test), Q value = 0.17

Table S254. Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FRMD4A MUTATED	3	3	6	2
FRMD4A WILD-TYPE	30	75	45	85

'FRMD4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00544 (Fisher's exact test), Q value = 0.036

Table S255. Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FRMD4A MUTATED	11	1	2	2	1
FRMD4A WILD-TYPE	54	58	40	32	56

Figure S169. Get High-res Image Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FRMD4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00396 (Fisher's exact test), Q value = 0.03

Table S256. Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FRMD4A MUTATED	3	0	0	3	5	1	5
FRMD4A WILD-TYPE	33	21	48	53	34	36	15

Figure S170. Get High-res Image Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.056

Table S257. Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FRMD4A MUTATED	14	3	1
FRMD4A WILD-TYPE	112	93	66

Figure S171. Get High-res Image Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.0078

Table S258. Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FRMD4A MUTATED	11	4	2	1
FRMD4A WILD-TYPE	45	101	58	67

Figure S172. Get High-res Image Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.45

Table S259. Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FRMD4A MUTATED	3	2	5	5	0	1
FRMD4A WILD-TYPE	31	16	54	33	19	42

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0553 (Fisher's exact test), Q value = 0.14

Table S260. Gene #26: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FRMD4A MUTATED	9	1	6
FRMD4A WILD-TYPE	113	50	32

'MBD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00709 (Fisher's exact test), Q value = 0.042

Table S261. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MBD6 MUTATED	1	16	2	1	2
MBD6 WILD-TYPE	78	110	25	42	10

Figure S173. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MBD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00486 (Fisher's exact test), Q value = 0.033

Table S262. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MBD6 MUTATED	2	12	0	3
MBD6 WILD-TYPE	69	64	34	60

Figure S174. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MBD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.088

Table S263. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MBD6 MUTATED	12	4	4
MBD6 WILD-TYPE	66	82	81

Figure S175. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MBD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 0.057

Table S264. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MBD6 MUTATED	4	2	9	5
MBD6 WILD-TYPE	29	76	42	82

Figure S176. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00302 (Fisher's exact test), Q value = 0.026

Table S265. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MBD6 MUTATED	12	2	1	2	1
MBD6 WILD-TYPE	53	57	41	32	56

Figure S177. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MBD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00077 (Fisher's exact test), Q value = 0.011

Table S266. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MBD6 MUTATED	2	0	2	2	6	0	6
MBD6 WILD-TYPE	34	21	46	54	33	37	14

Figure S178. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.092

Table S267. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MBD6 MUTATED	16	3	4
MBD6 WILD-TYPE	110	93	63

Figure S179. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S268. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MBD6 MUTATED	14	6	1	2
MBD6 WILD-TYPE	42	99	59	66

Figure S180. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.29

Table S269. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MBD6 MUTATED	2	2	6	3	0	0
MBD6 WILD-TYPE	32	16	53	35	19	43

'MBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00296 (Fisher's exact test), Q value = 0.026

Table S270. Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MBD6 MUTATED	3	3	7
MBD6 WILD-TYPE	119	48	31

Figure S181. Get High-res Image Gene #27: 'MBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.1

Table S271. Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZBTB7C MUTATED	1	12	2	0	0
ZBTB7C WILD-TYPE	78	114	25	43	12

Figure S182. Get High-res Image Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB7C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S272. Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZBTB7C MUTATED	0	12	1	0
ZBTB7C WILD-TYPE	71	64	33	63

Figure S183. Get High-res Image Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB7C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S273. Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZBTB7C MUTATED	5	1	6
ZBTB7C WILD-TYPE	73	85	79

'ZBTB7C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0834 (Fisher's exact test), Q value = 0.18

Table S274. Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZBTB7C MUTATED	0	3	6	3
ZBTB7C WILD-TYPE	33	75	45	84

'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.39

Table S275. Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZBTB7C MUTATED	6	1	2	2	1
ZBTB7C WILD-TYPE	59	58	40	32	56

'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.3

Table S276. Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZBTB7C MUTATED	1	0	1	4	4	0	2
ZBTB7C WILD-TYPE	35	21	47	52	35	37	18

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0807 (Fisher's exact test), Q value = 0.18

Table S277. Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZBTB7C MUTATED	11	2	2
ZBTB7C WILD-TYPE	115	94	65

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.072

Table S278. Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZBTB7C MUTATED	8	4	1	2
ZBTB7C WILD-TYPE	48	101	59	66

Figure S184. Get High-res Image Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 0.18

Table S279. Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZBTB7C MUTATED	2	3	6	3	0	0
ZBTB7C WILD-TYPE	32	15	53	35	19	43

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00928 (Fisher's exact test), Q value = 0.05

Table S280. Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZBTB7C MUTATED	6	1	7
ZBTB7C WILD-TYPE	116	50	31

Figure S185. Get High-res Image Gene #28: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S281. Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
JARID2 MUTATED	0	22	3	0	3
JARID2 WILD-TYPE	79	104	24	43	9

Figure S186. Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'JARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0057

Table S282. Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
JARID2 MUTATED	1	15	3	2
JARID2 WILD-TYPE	70	61	31	61

Figure S187. Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'JARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.064

Table S283. Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
JARID2 MUTATED	13	3	7
JARID2 WILD-TYPE	65	83	78

Figure S188. Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'JARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0032

Table S284. Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
JARID2 MUTATED	5	4	12	2
JARID2 WILD-TYPE	28	74	39	85

Figure S189. Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S285. Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
JARID2 MUTATED	17	1	3	5	0
JARID2 WILD-TYPE	48	58	39	29	57

Figure S190. Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'JARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S286. Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
JARID2 MUTATED	3	0	0	7	7	0	9
JARID2 WILD-TYPE	33	21	48	49	32	37	11

Figure S191. Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.0077

Table S287. Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
JARID2 MUTATED	22	4	2
JARID2 WILD-TYPE	104	92	65

Figure S192. Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S288. Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
JARID2 MUTATED	18	7	1	2
JARID2 WILD-TYPE	38	98	59	66

Figure S193. Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.48

Table S289. Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
JARID2 MUTATED	3	3	6	5	1	1
JARID2 WILD-TYPE	31	15	53	33	18	42

'JARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00043 (Fisher's exact test), Q value = 0.0075

Table S290. Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
JARID2 MUTATED	8	1	10
JARID2 WILD-TYPE	114	50	28

Figure S194. Get High-res Image Gene #29: 'JARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 0.12

Table S291. Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PAX6 MUTATED	1	13	0	3	1
PAX6 WILD-TYPE	78	113	27	40	11

Figure S195. Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.014

Table S292. Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PAX6 MUTATED	0	11	2	2
PAX6 WILD-TYPE	71	65	32	61

Figure S196. Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAX6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.3

Table S293. Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PAX6 MUTATED	8	3	4
PAX6 WILD-TYPE	70	83	81

'PAX6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.061

Table S294. Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PAX6 MUTATED	3	4	7	1
PAX6 WILD-TYPE	30	74	44	86

Figure S197. Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.11

Table S295. Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PAX6 MUTATED	8	1	2	4	1
PAX6 WILD-TYPE	57	58	40	30	56

Figure S198. Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PAX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00147 (Fisher's exact test), Q value = 0.017

Table S296. Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PAX6 MUTATED	2	0	1	3	4	0	6
PAX6 WILD-TYPE	34	21	47	53	35	37	14

Figure S199. Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0044

Table S297. Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PAX6 MUTATED	16	2	0
PAX6 WILD-TYPE	110	94	67

Figure S200. Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.053

Table S298. Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PAX6 MUTATED	8	8	1	1
PAX6 WILD-TYPE	48	97	59	67

Figure S201. Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 0.13

Table S299. Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PAX6 MUTATED	1	3	3	5	1	0
PAX6 WILD-TYPE	33	15	56	33	18	43

Figure S202. Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.079

Table S300. Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PAX6 MUTATED	8	0	5
PAX6 WILD-TYPE	114	51	33

Figure S203. Get High-res Image Gene #30: 'PAX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S301. Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIK3CA MUTATED	3	40	5	6	3
PIK3CA WILD-TYPE	76	86	22	37	9

Figure S204. Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S302. Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIK3CA MUTATED	4	19	23	5
PIK3CA WILD-TYPE	67	57	11	58

Figure S205. Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.021

Table S303. Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PIK3CA MUTATED	24	8	20
PIK3CA WILD-TYPE	54	78	65

Figure S206. Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00243 (Fisher's exact test), Q value = 0.022

Table S304. Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PIK3CA MUTATED	10	11	19	12
PIK3CA WILD-TYPE	23	67	32	75

Figure S207. Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S305. Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PIK3CA MUTATED	26	10	4	9	3
PIK3CA WILD-TYPE	39	49	38	25	54

Figure S208. Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S306. Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PIK3CA MUTATED	4	16	4	12	8	0	8
PIK3CA WILD-TYPE	32	5	44	44	31	37	12

Figure S209. Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.072

Table S307. Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PIK3CA MUTATED	34	16	7
PIK3CA WILD-TYPE	92	80	60

Figure S210. Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.0087

Table S308. Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PIK3CA MUTATED	16	27	11	3
PIK3CA WILD-TYPE	40	78	49	65

Figure S211. Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0039

Table S309. Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PIK3CA MUTATED	2	3	21	11	0	4
PIK3CA WILD-TYPE	32	15	38	27	19	39

Figure S212. Get High-res Image Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S310. Gene #31: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PIK3CA MUTATED	24	6	11
PIK3CA WILD-TYPE	98	45	27

'APC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.37

Table S311. Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
APC MUTATED	12	22	5	2	1
APC WILD-TYPE	67	104	22	41	11

'APC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.28

Table S312. Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
APC MUTATED	10	14	3	4
APC WILD-TYPE	61	62	31	59

'APC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.082

Table S313. Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
APC MUTATED	17	6	12
APC WILD-TYPE	61	80	73

Figure S213. Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'APC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0043

Table S314. Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
APC MUTATED	7	7	16	5
APC WILD-TYPE	26	71	35	82

Figure S214. Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.061

Table S315. Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
APC MUTATED	16	2	6	6	8
APC WILD-TYPE	49	57	36	28	49

Figure S215. Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'APC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00236 (Fisher's exact test), Q value = 0.022

Table S316. Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
APC MUTATED	3	0	2	11	11	5	6
APC WILD-TYPE	33	21	46	45	28	32	14

Figure S216. Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0031

Table S317. Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
APC MUTATED	30	4	8
APC WILD-TYPE	96	92	59

Figure S217. Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'APC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00127 (Fisher's exact test), Q value = 0.015

Table S318. Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
APC MUTATED	16	13	2	11
APC WILD-TYPE	40	92	58	57

Figure S218. Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 0.19

Table S319. Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
APC MUTATED	4	4	11	5	1	1
APC WILD-TYPE	30	14	48	33	18	42

'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.074

Table S320. Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
APC MUTATED	19	1	6
APC WILD-TYPE	103	50	32

Figure S219. Get High-res Image Gene #32: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NLK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S321. Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NLK MUTATED	1	10	1	0	0
NLK WILD-TYPE	78	116	26	43	12

'NLK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.073

Table S322. Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NLK MUTATED	1	7	1	0
NLK WILD-TYPE	70	69	33	63

Figure S220. Get High-res Image Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NLK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00128 (Fisher's exact test), Q value = 0.015

Table S323. Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NLK MUTATED	8	0	2
NLK WILD-TYPE	70	86	83

Figure S221. Get High-res Image Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NLK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00406 (Fisher's exact test), Q value = 0.03

Table S324. Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NLK MUTATED	0	1	7	2
NLK WILD-TYPE	33	77	44	85

Figure S222. Get High-res Image Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NLK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.088

Table S325. Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NLK MUTATED	7	0	1	1	1
NLK WILD-TYPE	58	59	41	33	56

Figure S223. Get High-res Image Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NLK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.24

Table S326. Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NLK MUTATED	2	0	0	2	2	1	3
NLK WILD-TYPE	34	21	48	54	37	36	17

'NLK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00195 (Fisher's exact test), Q value = 0.02

Table S327. Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NLK MUTATED	11	0	1
NLK WILD-TYPE	115	96	66

Figure S224. Get High-res Image Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NLK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.069

Table S328. Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NLK MUTATED	6	5	1	0
NLK WILD-TYPE	50	100	59	68

Figure S225. Get High-res Image Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.39

Table S329. Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NLK MUTATED	1	2	4	1	1	0
NLK WILD-TYPE	33	16	55	37	18	43

'NLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00861 (Fisher's exact test), Q value = 0.048

Table S330. Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NLK MUTATED	4	0	5
NLK WILD-TYPE	118	51	33

Figure S226. Get High-res Image Gene #33: 'NLK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'POLM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S331. Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
POLM MUTATED	1	8	0	0	1
POLM WILD-TYPE	78	118	27	43	11

'POLM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.21

Table S332. Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
POLM MUTATED	1	6	0	1
POLM WILD-TYPE	70	70	34	62

'POLM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 0.17

Table S333. Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
POLM MUTATED	4	0	4
POLM WILD-TYPE	74	86	81

'POLM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00478 (Fisher's exact test), Q value = 0.033

Table S334. Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
POLM MUTATED	2	0	5	1
POLM WILD-TYPE	31	78	46	86

Figure S227. Get High-res Image Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'POLM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.5

Table S335. Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
POLM MUTATED	5	1	1	2	1
POLM WILD-TYPE	60	58	41	32	56

'POLM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.25

Table S336. Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
POLM MUTATED	2	0	0	2	2	1	3
POLM WILD-TYPE	34	21	48	54	37	36	17

'POLM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.18

Table S337. Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
POLM MUTATED	8	1	1
POLM WILD-TYPE	118	95	66

'POLM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00345 (Fisher's exact test), Q value = 0.028

Table S338. Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
POLM MUTATED	6	4	0	0
POLM WILD-TYPE	50	101	60	68

Figure S228. Get High-res Image Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'POLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.35

Table S339. Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
POLM MUTATED	0	0	3	3	0	0
POLM WILD-TYPE	34	18	56	35	19	43

'POLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.43

Table S340. Gene #34: 'POLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
POLM MUTATED	4	0	2
POLM WILD-TYPE	118	51	36

'TMEM41A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.25

Table S341. Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM41A MUTATED	0	4	2	0	0
TMEM41A WILD-TYPE	79	122	25	43	12

'TMEM41A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 0.15

Table S342. Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TMEM41A MUTATED	0	4	1	0
TMEM41A WILD-TYPE	71	72	33	63

'TMEM41A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.51

Table S343. Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TMEM41A MUTATED	2	0	2
TMEM41A WILD-TYPE	76	86	83

'TMEM41A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.37

Table S344. Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TMEM41A MUTATED	0	2	2	0
TMEM41A WILD-TYPE	33	76	49	87

'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.66

Table S345. Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TMEM41A MUTATED	3	1	1	1	0
TMEM41A WILD-TYPE	62	58	41	33	57

'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.26

Table S346. Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TMEM41A MUTATED	1	0	0	1	2	0	2
TMEM41A WILD-TYPE	35	21	48	55	37	37	18

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.29

Table S347. Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TMEM41A MUTATED	5	1	0
TMEM41A WILD-TYPE	121	95	67

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 0.55

Table S348. Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TMEM41A MUTATED	2	3	1	0
TMEM41A WILD-TYPE	54	102	59	68

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.68

Table S349. Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TMEM41A MUTATED	0	1	1	2	0	1
TMEM41A WILD-TYPE	34	17	58	36	19	42

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.49

Table S350. Gene #35: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TMEM41A MUTATED	2	1	2
TMEM41A WILD-TYPE	120	50	36

'WBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.56

Table S351. Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WBP1 MUTATED	1	6	1	0	0
WBP1 WILD-TYPE	78	120	26	43	12

'WBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S352. Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WBP1 MUTATED	0	5	1	2
WBP1 WILD-TYPE	71	71	33	61

'WBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00983 (Fisher's exact test), Q value = 0.051

Table S353. Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
WBP1 MUTATED	6	0	2
WBP1 WILD-TYPE	72	86	83

Figure S229. Get High-res Image Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.055

Table S354. Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
WBP1 MUTATED	1	2	5	0
WBP1 WILD-TYPE	32	76	46	87

Figure S230. Get High-res Image Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.054

Table S355. Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
WBP1 MUTATED	5	0	0	2	0
WBP1 WILD-TYPE	60	59	42	32	57

Figure S231. Get High-res Image Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.28

Table S356. Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
WBP1 MUTATED	2	0	0	1	3	0	1
WBP1 WILD-TYPE	34	21	48	55	36	37	19

'WBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00436 (Fisher's exact test), Q value = 0.031

Table S357. Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
WBP1 MUTATED	8	0	0
WBP1 WILD-TYPE	118	96	67

Figure S232. Get High-res Image Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00129 (Fisher's exact test), Q value = 0.015

Table S358. Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
WBP1 MUTATED	6	2	0	0
WBP1 WILD-TYPE	50	103	60	68

Figure S233. Get High-res Image Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.57

Table S359. Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
WBP1 MUTATED	1	1	4	1	0	0
WBP1 WILD-TYPE	33	17	55	37	19	43

'WBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S360. Gene #36: 'WBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
WBP1 MUTATED	4	0	3
WBP1 WILD-TYPE	118	51	35

'KIAA0182 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00933 (Fisher's exact test), Q value = 0.05

Table S361. Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA0182 MUTATED	1	16	0	2	1
KIAA0182 WILD-TYPE	78	110	27	41	11

Figure S234. Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0182 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.16

Table S362. Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA0182 MUTATED	3	9	1	1
KIAA0182 WILD-TYPE	68	67	33	62

'KIAA0182 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00417 (Fisher's exact test), Q value = 0.03

Table S363. Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA0182 MUTATED	11	1	5
KIAA0182 WILD-TYPE	67	85	80

Figure S235. Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA0182 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S364. Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA0182 MUTATED	3	1	12	1
KIAA0182 WILD-TYPE	30	77	39	86

Figure S236. Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0182 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.15

Table S365. Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA0182 MUTATED	8	1	3	3	1
KIAA0182 WILD-TYPE	57	58	39	31	56

'KIAA0182 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S366. Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA0182 MUTATED	2	0	0	3	2	1	8
KIAA0182 WILD-TYPE	34	21	48	53	37	36	12

Figure S237. Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0182 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0048

Table S367. Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA0182 MUTATED	16	0	4
KIAA0182 WILD-TYPE	110	96	63

Figure S238. Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0182 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S368. Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA0182 MUTATED	12	6	0	2
KIAA0182 WILD-TYPE	44	99	60	66

Figure S239. Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0182 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.12

Table S369. Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA0182 MUTATED	1	1	2	6	1	0
KIAA0182 WILD-TYPE	33	17	57	32	18	43

Figure S240. Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIAA0182 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 5e-04 (Fisher's exact test), Q value = 0.0084

Table S370. Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA0182 MUTATED	4	0	7
KIAA0182 WILD-TYPE	118	51	31

Figure S241. Get High-res Image Gene #37: 'KIAA0182 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.25

Table S371. Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SNAPC2 MUTATED	0	8	1	2	0
SNAPC2 WILD-TYPE	79	118	26	41	12

'SNAPC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.059

Table S372. Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SNAPC2 MUTATED	0	7	2	1
SNAPC2 WILD-TYPE	71	69	32	62

Figure S242. Get High-res Image Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SNAPC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 0.12

Table S373. Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SNAPC2 MUTATED	5	0	3
SNAPC2 WILD-TYPE	73	86	82

Figure S243. Get High-res Image Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SNAPC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0035

Table S374. Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SNAPC2 MUTATED	0	1	7	0
SNAPC2 WILD-TYPE	33	77	44	87

Figure S244. Get High-res Image Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.051

Table S375. Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SNAPC2 MUTATED	6	0	0	3	1
SNAPC2 WILD-TYPE	59	59	42	31	56

Figure S245. Get High-res Image Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00595 (Fisher's exact test), Q value = 0.038

Table S376. Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SNAPC2 MUTATED	1	0	0	2	3	0	4
SNAPC2 WILD-TYPE	35	21	48	54	36	37	16

Figure S246. Get High-res Image Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0055 (Fisher's exact test), Q value = 0.036

Table S377. Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SNAPC2 MUTATED	10	1	0
SNAPC2 WILD-TYPE	116	95	67

Figure S247. Get High-res Image Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00308 (Fisher's exact test), Q value = 0.026

Table S378. Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SNAPC2 MUTATED	7	3	1	0
SNAPC2 WILD-TYPE	49	102	59	68

Figure S248. Get High-res Image Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.44

Table S379. Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SNAPC2 MUTATED	0	2	4	2	0	1
SNAPC2 WILD-TYPE	34	16	55	36	19	42

'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.56

Table S380. Gene #38: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SNAPC2 MUTATED	5	1	3
SNAPC2 WILD-TYPE	117	50	35

'C1QTNF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.11

Table S381. Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C1QTNF5 MUTATED	0	5	3	0	0
C1QTNF5 WILD-TYPE	79	121	24	43	12

Figure S249. Get High-res Image Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C1QTNF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.13

Table S382. Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C1QTNF5 MUTATED	0	3	2	0
C1QTNF5 WILD-TYPE	71	73	32	63

Figure S250. Get High-res Image Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C1QTNF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.014

Table S383. Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C1QTNF5 MUTATED	7	0	1
C1QTNF5 WILD-TYPE	71	86	84

Figure S251. Get High-res Image Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C1QTNF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0052

Table S384. Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C1QTNF5 MUTATED	2	0	6	0
C1QTNF5 WILD-TYPE	31	78	45	87

Figure S252. Get High-res Image Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C1QTNF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.089

Table S385. Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C1QTNF5 MUTATED	4	0	0	2	0
C1QTNF5 WILD-TYPE	61	59	42	32	57

Figure S253. Get High-res Image Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C1QTNF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00204 (Fisher's exact test), Q value = 0.02

Table S386. Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C1QTNF5 MUTATED	0	1	0	0	2	0	3
C1QTNF5 WILD-TYPE	36	20	48	56	37	37	17

Figure S254. Get High-res Image Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.15

Table S387. Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C1QTNF5 MUTATED	7	1	0
C1QTNF5 WILD-TYPE	119	95	67

'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.074

Table S388. Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C1QTNF5 MUTATED	5	2	1	0
C1QTNF5 WILD-TYPE	51	103	59	68

Figure S255. Get High-res Image Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.67

Table S389. Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C1QTNF5 MUTATED	0	1	2	0	0	1
C1QTNF5 WILD-TYPE	34	17	57	38	19	42

'C1QTNF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S390. Gene #39: 'C1QTNF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C1QTNF5 MUTATED	1	1	2
C1QTNF5 WILD-TYPE	121	50	36

'AOC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 0.93

Table S391. Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AOC3 MUTATED	3	8	1	1	0
AOC3 WILD-TYPE	76	118	26	42	12

'AOC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S392. Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AOC3 MUTATED	3	6	2	0
AOC3 WILD-TYPE	68	70	32	63

'AOC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.67

Table S393. Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
AOC3 MUTATED	4	2	3
AOC3 WILD-TYPE	74	84	82

'AOC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 0.15

Table S394. Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
AOC3 MUTATED	0	3	5	1
AOC3 WILD-TYPE	33	75	46	86

'AOC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.37

Table S395. Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
AOC3 MUTATED	6	1	2	0	3
AOC3 WILD-TYPE	59	58	40	34	54

'AOC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 0.97

Table S396. Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
AOC3 MUTATED	1	1	1	4	2	2	1
AOC3 WILD-TYPE	35	20	47	52	37	35	19

'AOC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S397. Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
AOC3 MUTATED	8	2	3
AOC3 WILD-TYPE	118	94	64

'AOC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.08

Table S398. Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
AOC3 MUTATED	6	3	0	4
AOC3 WILD-TYPE	50	102	60	64

Figure S256. Get High-res Image Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AOC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.55

Table S399. Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
AOC3 MUTATED	3	0	2	1	2	1
AOC3 WILD-TYPE	31	18	57	37	17	42

'AOC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0467 (Fisher's exact test), Q value = 0.13

Table S400. Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
AOC3 MUTATED	5	0	4
AOC3 WILD-TYPE	117	51	34

Figure S257. Get High-res Image Gene #40: 'AOC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.011

Table S401. Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CIC MUTATED	1	21	0	3	1
CIC WILD-TYPE	78	105	27	40	11

Figure S258. Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CIC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.011

Table S402. Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CIC MUTATED	1	14	1	3
CIC WILD-TYPE	70	62	33	60

Figure S259. Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CIC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.061

Table S403. Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CIC MUTATED	14	4	6
CIC WILD-TYPE	64	82	79

Figure S260. Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CIC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00449 (Fisher's exact test), Q value = 0.032

Table S404. Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CIC MUTATED	6	4	10	4
CIC WILD-TYPE	27	74	41	83

Figure S261. Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0531 (Fisher's exact test), Q value = 0.14

Table S405. Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CIC MUTATED	10	3	3	4	1
CIC WILD-TYPE	55	56	39	30	56

'CIC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0055

Table S406. Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CIC MUTATED	6	0	0	4	6	0	5
CIC WILD-TYPE	30	21	48	52	33	37	15

Figure S262. Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0092 (Fisher's exact test), Q value = 0.049

Table S407. Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CIC MUTATED	19	4	3
CIC WILD-TYPE	107	92	64

Figure S263. Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CIC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S408. Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CIC MUTATED	15	8	3	0
CIC WILD-TYPE	41	97	57	68

Figure S264. Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.49

Table S409. Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CIC MUTATED	2	1	7	4	0	1
CIC WILD-TYPE	32	17	52	34	19	42

'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.074

Table S410. Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CIC MUTATED	6	2	7
CIC WILD-TYPE	116	49	31

Figure S265. Get High-res Image Gene #41: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.082

Table S411. Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HLA-B MUTATED	0	10	3	1	0
HLA-B WILD-TYPE	79	116	24	42	12

Figure S266. Get High-res Image Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0024

Table S412. Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HLA-B MUTATED	0	5	6	0
HLA-B WILD-TYPE	71	71	28	63

Figure S267. Get High-res Image Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HLA-B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00173 (Fisher's exact test), Q value = 0.018

Table S413. Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HLA-B MUTATED	10	1	2
HLA-B WILD-TYPE	68	85	83

Figure S268. Get High-res Image Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HLA-B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.0078

Table S414. Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HLA-B MUTATED	3	1	8	1
HLA-B WILD-TYPE	30	77	43	86

Figure S269. Get High-res Image Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00409 (Fisher's exact test), Q value = 0.03

Table S415. Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HLA-B MUTATED	7	0	2	3	0
HLA-B WILD-TYPE	58	59	40	31	57

Figure S270. Get High-res Image Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HLA-B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00457 (Fisher's exact test), Q value = 0.032

Table S416. Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HLA-B MUTATED	3	1	0	1	3	0	4
HLA-B WILD-TYPE	33	20	48	55	36	37	16

Figure S271. Get High-res Image Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00332 (Fisher's exact test), Q value = 0.027

Table S417. Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HLA-B MUTATED	12	2	0
HLA-B WILD-TYPE	114	94	67

Figure S272. Get High-res Image Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.092

Table S418. Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HLA-B MUTATED	6	6	2	0
HLA-B WILD-TYPE	50	99	58	68

Figure S273. Get High-res Image Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.53

Table S419. Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HLA-B MUTATED	0	1	5	2	0	1
HLA-B WILD-TYPE	34	17	54	36	19	42

'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 0.94

Table S420. Gene #42: 'HLA-B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HLA-B MUTATED	5	2	2
HLA-B WILD-TYPE	117	49	36

'CD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00935 (Fisher's exact test), Q value = 0.05

Table S421. Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CD4 MUTATED	1	13	0	0	1
CD4 WILD-TYPE	78	113	27	43	11

Figure S274. Get High-res Image Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00205 (Fisher's exact test), Q value = 0.02

Table S422. Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CD4 MUTATED	1	11	0	2
CD4 WILD-TYPE	70	65	34	61

Figure S275. Get High-res Image Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.29

Table S423. Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CD4 MUTATED	7	2	4
CD4 WILD-TYPE	71	84	81

'CD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.15

Table S424. Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CD4 MUTATED	3	4	5	1
CD4 WILD-TYPE	30	74	46	86

'CD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.27

Table S425. Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CD4 MUTATED	7	2	1	3	1
CD4 WILD-TYPE	58	57	41	31	56

'CD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S426. Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CD4 MUTATED	2	0	1	5	3	0	3
CD4 WILD-TYPE	34	21	47	51	36	37	17

'CD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.1

Table S427. Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CD4 MUTATED	11	1	3
CD4 WILD-TYPE	115	95	64

Figure S276. Get High-res Image Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.28

Table S428. Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CD4 MUTATED	6	6	1	2
CD4 WILD-TYPE	50	99	59	66

'CD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.061

Table S429. Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CD4 MUTATED	3	5	3	1	0	1
CD4 WILD-TYPE	31	13	56	37	19	42

Figure S277. Get High-res Image Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.097

Table S430. Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CD4 MUTATED	6	1	6
CD4 WILD-TYPE	116	50	32

Figure S278. Get High-res Image Gene #43: 'CD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZMYM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.23

Table S431. Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZMYM4 MUTATED	1	10	3	2	1
ZMYM4 WILD-TYPE	78	116	24	41	11

'ZMYM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.11

Table S432. Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZMYM4 MUTATED	1	6	4	1
ZMYM4 WILD-TYPE	70	70	30	62

Figure S279. Get High-res Image Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZMYM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00325 (Fisher's exact test), Q value = 0.027

Table S433. Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZMYM4 MUTATED	11	1	4
ZMYM4 WILD-TYPE	67	85	81

Figure S280. Get High-res Image Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZMYM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S434. Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZMYM4 MUTATED	2	4	7	3
ZMYM4 WILD-TYPE	31	74	44	84

'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.1

Table S435. Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZMYM4 MUTATED	9	1	2	2	1
ZMYM4 WILD-TYPE	56	58	40	32	56

Figure S281. Get High-res Image Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00381 (Fisher's exact test), Q value = 0.029

Table S436. Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZMYM4 MUTATED	3	1	0	3	3	0	5
ZMYM4 WILD-TYPE	33	20	48	53	36	37	15

Figure S282. Get High-res Image Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.089

Table S437. Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZMYM4 MUTATED	13	3	1
ZMYM4 WILD-TYPE	113	93	66

Figure S283. Get High-res Image Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0375 (Fisher's exact test), Q value = 0.11

Table S438. Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZMYM4 MUTATED	6	9	1	1
ZMYM4 WILD-TYPE	50	96	59	67

Figure S284. Get High-res Image Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.51

Table S439. Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZMYM4 MUTATED	1	2	3	4	0	1
ZMYM4 WILD-TYPE	33	16	56	34	19	42

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.58

Table S440. Gene #44: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZMYM4 MUTATED	8	1	2
ZMYM4 WILD-TYPE	114	50	36

'ZNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.035

Table S441. Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF43 MUTATED	2	24	3	4	1
ZNF43 WILD-TYPE	77	102	24	39	11

Figure S285. Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.0068

Table S442. Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF43 MUTATED	3	16	7	2
ZNF43 WILD-TYPE	68	60	27	61

Figure S286. Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.31

Table S443. Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZNF43 MUTATED	14	8	8
ZNF43 WILD-TYPE	64	78	77

'ZNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00399 (Fisher's exact test), Q value = 0.03

Table S444. Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZNF43 MUTATED	4	5	14	7
ZNF43 WILD-TYPE	29	73	37	80

Figure S287. Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S445. Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF43 MUTATED	20	2	1	6	3
ZNF43 WILD-TYPE	45	57	41	28	54

Figure S288. Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00197 (Fisher's exact test), Q value = 0.02

Table S446. Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF43 MUTATED	5	2	3	6	6	1	9
ZNF43 WILD-TYPE	31	19	45	50	33	36	11

Figure S289. Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S447. Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF43 MUTATED	28	4	2
ZNF43 WILD-TYPE	98	92	65

Figure S290. Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S448. Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF43 MUTATED	16	14	2	2
ZNF43 WILD-TYPE	40	91	58	66

Figure S291. Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.005

Table S449. Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZNF43 MUTATED	1	7	10	5	1	0
ZNF43 WILD-TYPE	33	11	49	33	18	43

Figure S292. Get High-res Image Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.17

Table S450. Gene #45: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZNF43 MUTATED	15	2	7
ZNF43 WILD-TYPE	107	49	31

'NT5M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.61

Table S451. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NT5M MUTATED	0	4	0	1	0
NT5M WILD-TYPE	79	122	27	42	12

'NT5M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.35

Table S452. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NT5M MUTATED	0	2	1	0
NT5M WILD-TYPE	71	74	33	63

'NT5M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.43

Table S453. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NT5M MUTATED	2	1	0
NT5M WILD-TYPE	76	85	85

'NT5M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.38

Table S454. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NT5M MUTATED	0	0	2	1
NT5M WILD-TYPE	33	78	49	86

'NT5M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.69

Table S455. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NT5M MUTATED	2	1	0	1	0
NT5M WILD-TYPE	63	58	42	33	57

'NT5M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 0.11

Table S456. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NT5M MUTATED	1	0	0	0	1	0	2
NT5M WILD-TYPE	35	21	48	56	38	37	18

Figure S293. Get High-res Image Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NT5M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.15

Table S457. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NT5M MUTATED	5	0	0
NT5M WILD-TYPE	121	96	67

'NT5M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.4

Table S458. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NT5M MUTATED	2	3	0	0
NT5M WILD-TYPE	54	102	60	68

'NT5M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.31

Table S459. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NT5M MUTATED	1	0	0	2	0	0
NT5M WILD-TYPE	33	18	59	36	19	43

'NT5M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S460. Gene #46: 'NT5M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NT5M MUTATED	1	0	2
NT5M WILD-TYPE	121	51	36

'GBP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.16

Table S461. Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GBP7 MUTATED	0	8	1	0	0
GBP7 WILD-TYPE	79	118	26	43	12

'GBP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.35

Table S462. Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GBP7 MUTATED	1	4	1	0
GBP7 WILD-TYPE	70	72	33	63

'GBP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0923 (Fisher's exact test), Q value = 0.2

Table S463. Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GBP7 MUTATED	6	1	2
GBP7 WILD-TYPE	72	85	83

'GBP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 0.81

Table S464. Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GBP7 MUTATED	1	3	3	2
GBP7 WILD-TYPE	32	75	48	85

'GBP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S465. Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GBP7 MUTATED	3	1	2	1	0
GBP7 WILD-TYPE	62	58	40	33	57

'GBP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S466. Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GBP7 MUTATED	2	0	0	2	2	0	1
GBP7 WILD-TYPE	34	21	48	54	37	37	19

'GBP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.35

Table S467. Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GBP7 MUTATED	5	4	0
GBP7 WILD-TYPE	121	92	67

'GBP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.55

Table S468. Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GBP7 MUTATED	3	2	3	1
GBP7 WILD-TYPE	53	103	57	67

'GBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 0.86

Table S469. Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GBP7 MUTATED	0	1	2	1	0	2
GBP7 WILD-TYPE	34	17	57	37	19	41

'GBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.32

Table S470. Gene #47: 'GBP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GBP7 MUTATED	2	3	1
GBP7 WILD-TYPE	120	48	37

'BCL9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.15

Table S471. Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BCL9L MUTATED	2	16	3	2	0
BCL9L WILD-TYPE	77	110	24	41	12

'BCL9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00944 (Fisher's exact test), Q value = 0.05

Table S472. Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BCL9L MUTATED	2	12	4	2
BCL9L WILD-TYPE	69	64	30	61

Figure S294. Get High-res Image Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCL9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0047 (Fisher's exact test), Q value = 0.032

Table S473. Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BCL9L MUTATED	13	2	7
BCL9L WILD-TYPE	65	84	78

Figure S295. Get High-res Image Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCL9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.0071

Table S474. Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BCL9L MUTATED	4	4	12	2
BCL9L WILD-TYPE	29	74	39	85

Figure S296. Get High-res Image Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00412 (Fisher's exact test), Q value = 0.03

Table S475. Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BCL9L MUTATED	12	2	1	5	2
BCL9L WILD-TYPE	53	57	41	29	55

Figure S297. Get High-res Image Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S476. Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BCL9L MUTATED	2	1	0	1	7	1	10
BCL9L WILD-TYPE	34	20	48	55	32	36	10

Figure S298. Get High-res Image Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.011

Table S477. Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BCL9L MUTATED	19	4	1
BCL9L WILD-TYPE	107	92	66

Figure S299. Get High-res Image Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0039

Table S478. Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BCL9L MUTATED	12	10	1	1
BCL9L WILD-TYPE	44	95	59	67

Figure S300. Get High-res Image Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.59

Table S479. Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BCL9L MUTATED	4	1	6	5	1	1
BCL9L WILD-TYPE	30	17	53	33	18	42

'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0502 (Fisher's exact test), Q value = 0.13

Table S480. Gene #48: 'BCL9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BCL9L MUTATED	9	2	7
BCL9L WILD-TYPE	113	49	31

'TBX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.12

Table S481. Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TBX4 MUTATED	0	10	0	1	0
TBX4 WILD-TYPE	79	116	27	42	12

Figure S301. Get High-res Image Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TBX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.064

Table S482. Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TBX4 MUTATED	0	7	1	1
TBX4 WILD-TYPE	71	69	33	62

Figure S302. Get High-res Image Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TBX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.3

Table S483. Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TBX4 MUTATED	5	1	3
TBX4 WILD-TYPE	73	85	82

'TBX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.51

Table S484. Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TBX4 MUTATED	1	2	4	2
TBX4 WILD-TYPE	32	76	47	85

'TBX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.11

Table S485. Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TBX4 MUTATED	4	0	0	3	1
TBX4 WILD-TYPE	61	59	42	31	56

Figure S303. Get High-res Image Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TBX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.069

Table S486. Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TBX4 MUTATED	1	0	0	1	3	0	3
TBX4 WILD-TYPE	35	21	48	55	36	37	17

Figure S304. Get High-res Image Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.11

Table S487. Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TBX4 MUTATED	9	2	0
TBX4 WILD-TYPE	117	94	67

Figure S305. Get High-res Image Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.003 (Fisher's exact test), Q value = 0.026

Table S488. Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TBX4 MUTATED	7	3	1	0
TBX4 WILD-TYPE	49	102	59	68

Figure S306. Get High-res Image Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.67

Table S489. Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TBX4 MUTATED	1	1	3	2	0	0
TBX4 WILD-TYPE	33	17	56	36	19	43

'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S490. Gene #49: 'TBX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TBX4 MUTATED	3	1	3
TBX4 WILD-TYPE	119	50	35

'C7ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.24

Table S491. Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C7ORF50 MUTATED	0	7	2	1	0
C7ORF50 WILD-TYPE	79	119	25	42	12

'C7ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.014

Table S492. Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C7ORF50 MUTATED	0	8	2	0
C7ORF50 WILD-TYPE	71	68	32	63

Figure S307. Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.052

Table S493. Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C7ORF50 MUTATED	6	0	2
C7ORF50 WILD-TYPE	72	86	83

Figure S308. Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C7ORF50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00118 (Fisher's exact test), Q value = 0.014

Table S494. Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C7ORF50 MUTATED	1	1	6	0
C7ORF50 WILD-TYPE	32	77	45	87

Figure S309. Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00634 (Fisher's exact test), Q value = 0.039

Table S495. Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C7ORF50 MUTATED	6	0	1	0	0
C7ORF50 WILD-TYPE	59	59	41	34	57

Figure S310. Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.066

Table S496. Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C7ORF50 MUTATED	0	0	0	3	1	0	3
C7ORF50 WILD-TYPE	36	21	48	53	38	37	17

Figure S311. Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.056

Table S497. Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C7ORF50 MUTATED	9	1	0
C7ORF50 WILD-TYPE	117	95	67

Figure S312. Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00157 (Fisher's exact test), Q value = 0.017

Table S498. Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C7ORF50 MUTATED	7	2	1	0
C7ORF50 WILD-TYPE	49	103	59	68

Figure S313. Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.77

Table S499. Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C7ORF50 MUTATED	1	1	5	2	0	1
C7ORF50 WILD-TYPE	33	17	54	36	19	42

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 0.13

Table S500. Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C7ORF50 MUTATED	4	1	5
C7ORF50 WILD-TYPE	118	50	33

Figure S314. Get High-res Image Gene #50: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.056

Table S501. Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DDC MUTATED	0	7	0	0	2
DDC WILD-TYPE	79	119	27	43	10

Figure S315. Get High-res Image Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.6

Table S502. Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DDC MUTATED	1	2	2	1
DDC WILD-TYPE	70	74	32	62

'DDC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.27

Table S503. Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DDC MUTATED	5	1	2
DDC WILD-TYPE	73	85	83

'DDC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.3

Table S504. Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DDC MUTATED	1	2	4	1
DDC WILD-TYPE	32	76	47	86

'DDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0062 (Fisher's exact test), Q value = 0.039

Table S505. Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DDC MUTATED	6	0	1	0	0
DDC WILD-TYPE	59	59	41	34	57

Figure S316. Get High-res Image Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0896 (Fisher's exact test), Q value = 0.19

Table S506. Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DDC MUTATED	3	0	0	3	0	0	1
DDC WILD-TYPE	33	21	48	53	39	37	19

'DDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.019

Table S507. Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DDC MUTATED	9	0	0
DDC WILD-TYPE	117	96	67

Figure S317. Get High-res Image Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.059

Table S508. Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DDC MUTATED	5	4	0	0
DDC WILD-TYPE	51	101	60	68

Figure S318. Get High-res Image Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.5

Table S509. Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DDC MUTATED	0	1	3	2	0	0
DDC WILD-TYPE	34	17	56	36	19	43

'DDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.55

Table S510. Gene #51: 'DDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DDC MUTATED	5	0	1
DDC WILD-TYPE	117	51	37

'ADAM28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.34

Table S511. Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ADAM28 MUTATED	2	10	0	1	1
ADAM28 WILD-TYPE	77	116	27	42	11

'ADAM28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00736 (Fisher's exact test), Q value = 0.043

Table S512. Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ADAM28 MUTATED	2	8	0	0
ADAM28 WILD-TYPE	69	68	34	63

Figure S319. Get High-res Image Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADAM28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.41

Table S513. Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ADAM28 MUTATED	6	3	2
ADAM28 WILD-TYPE	72	83	83

'ADAM28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0699 (Fisher's exact test), Q value = 0.17

Table S514. Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ADAM28 MUTATED	1	2	6	2
ADAM28 WILD-TYPE	32	76	45	85

'ADAM28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.44

Table S515. Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ADAM28 MUTATED	5	1	3	2	1
ADAM28 WILD-TYPE	60	58	39	32	56

'ADAM28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0822 (Fisher's exact test), Q value = 0.18

Table S516. Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ADAM28 MUTATED	1	0	0	5	2	1	3
ADAM28 WILD-TYPE	35	21	48	51	37	36	17

'ADAM28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.085

Table S517. Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ADAM28 MUTATED	11	1	2
ADAM28 WILD-TYPE	115	95	65

Figure S320. Get High-res Image Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADAM28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.24

Table S518. Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ADAM28 MUTATED	5	7	1	1
ADAM28 WILD-TYPE	51	98	59	67

'ADAM28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0993 (Fisher's exact test), Q value = 0.21

Table S519. Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ADAM28 MUTATED	0	2	3	3	0	0
ADAM28 WILD-TYPE	34	16	56	35	19	43

'ADAM28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.48

Table S520. Gene #52: 'ADAM28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ADAM28 MUTATED	4	1	3
ADAM28 WILD-TYPE	118	50	35

'IWS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.13

Table S521. Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IWS1 MUTATED	0	9	0	2	1
IWS1 WILD-TYPE	79	117	27	41	11

Figure S321. Get High-res Image Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IWS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.16

Table S522. Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IWS1 MUTATED	0	5	2	1
IWS1 WILD-TYPE	71	71	32	62

'IWS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.27

Table S523. Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IWS1 MUTATED	6	2	2
IWS1 WILD-TYPE	72	84	83

'IWS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00275 (Fisher's exact test), Q value = 0.024

Table S524. Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IWS1 MUTATED	2	2	6	0
IWS1 WILD-TYPE	31	76	45	87

Figure S322. Get High-res Image Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IWS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.5

Table S525. Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IWS1 MUTATED	5	1	1	2	1
IWS1 WILD-TYPE	60	58	41	32	56

'IWS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0931 (Fisher's exact test), Q value = 0.2

Table S526. Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IWS1 MUTATED	1	1	1	1	3	0	3
IWS1 WILD-TYPE	35	20	47	55	36	37	17

'IWS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.091

Table S527. Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IWS1 MUTATED	10	1	1
IWS1 WILD-TYPE	116	95	66

Figure S323. Get High-res Image Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IWS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00153 (Fisher's exact test), Q value = 0.017

Table S528. Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IWS1 MUTATED	7	5	0	0
IWS1 WILD-TYPE	49	100	60	68

Figure S324. Get High-res Image Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IWS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.87

Table S529. Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IWS1 MUTATED	0	0	2	2	0	1
IWS1 WILD-TYPE	34	18	57	36	19	42

'IWS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.41

Table S530. Gene #53: 'IWS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IWS1 MUTATED	3	0	2
IWS1 WILD-TYPE	119	51	36

'MUC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 0.95

Table S531. Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MUC6 MUTATED	8	18	3	4	1
MUC6 WILD-TYPE	71	108	24	39	11

'MUC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S532. Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MUC6 MUTATED	7	13	5	3
MUC6 WILD-TYPE	64	63	29	60

'MUC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.31

Table S533. Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MUC6 MUTATED	13	7	8
MUC6 WILD-TYPE	65	79	77

'MUC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.074 (Fisher's exact test), Q value = 0.17

Table S534. Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MUC6 MUTATED	5	8	10	5
MUC6 WILD-TYPE	28	70	41	82

'MUC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00171 (Fisher's exact test), Q value = 0.018

Table S535. Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MUC6 MUTATED	17	2	3	2	6
MUC6 WILD-TYPE	48	57	39	32	51

Figure S325. Get High-res Image Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MUC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0055

Table S536. Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MUC6 MUTATED	6	1	0	6	6	3	8
MUC6 WILD-TYPE	30	20	48	50	33	34	12

Figure S326. Get High-res Image Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00432 (Fisher's exact test), Q value = 0.031

Table S537. Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MUC6 MUTATED	23	4	7
MUC6 WILD-TYPE	103	92	60

Figure S327. Get High-res Image Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MUC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00561 (Fisher's exact test), Q value = 0.036

Table S538. Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MUC6 MUTATED	12	14	1	7
MUC6 WILD-TYPE	44	91	59	61

Figure S328. Get High-res Image Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0917 (Fisher's exact test), Q value = 0.2

Table S539. Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MUC6 MUTATED	5	3	6	8	1	1
MUC6 WILD-TYPE	29	15	53	30	18	42

'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.27

Table S540. Gene #54: 'MUC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MUC6 MUTATED	17	2	5
MUC6 WILD-TYPE	105	49	33

'GXYLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.15

Table S541. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GXYLT1 MUTATED	0	10	1	1	0
GXYLT1 WILD-TYPE	79	116	26	42	12

'GXYLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.075

Table S542. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GXYLT1 MUTATED	0	7	3	2
GXYLT1 WILD-TYPE	71	69	31	61

Figure S329. Get High-res Image Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GXYLT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0041

Table S543. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GXYLT1 MUTATED	10	0	2
GXYLT1 WILD-TYPE	68	86	83

Figure S330. Get High-res Image Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GXYLT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00679 (Fisher's exact test), Q value = 0.041

Table S544. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GXYLT1 MUTATED	5	2	4	1
GXYLT1 WILD-TYPE	28	76	47	86

Figure S331. Get High-res Image Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GXYLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00931 (Fisher's exact test), Q value = 0.05

Table S545. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GXYLT1 MUTATED	8	1	1	1	0
GXYLT1 WILD-TYPE	57	58	41	33	57

Figure S332. Get High-res Image Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GXYLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00697 (Fisher's exact test), Q value = 0.041

Table S546. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GXYLT1 MUTATED	3	0	0	2	2	0	4
GXYLT1 WILD-TYPE	33	21	48	54	37	37	16

Figure S333. Get High-res Image Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.071

Table S547. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GXYLT1 MUTATED	10	2	0
GXYLT1 WILD-TYPE	116	94	67

Figure S334. Get High-res Image Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0636 (Fisher's exact test), Q value = 0.16

Table S548. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GXYLT1 MUTATED	6	4	1	1
GXYLT1 WILD-TYPE	50	101	59	67

'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S549. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GXYLT1 MUTATED	0	1	5	4	0	1
GXYLT1 WILD-TYPE	34	17	54	34	19	42

'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S550. Gene #55: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GXYLT1 MUTATED	7	1	3
GXYLT1 WILD-TYPE	115	50	35

'HLA-C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.11

Table S551. Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HLA-C MUTATED	0	11	1	1	0
HLA-C WILD-TYPE	79	115	26	42	12

Figure S335. Get High-res Image Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.11

Table S552. Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HLA-C MUTATED	0	4	3	1
HLA-C WILD-TYPE	71	72	31	62

Figure S336. Get High-res Image Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HLA-C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.092

Table S553. Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HLA-C MUTATED	8	1	3
HLA-C WILD-TYPE	70	85	82

Figure S337. Get High-res Image Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HLA-C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0848 (Fisher's exact test), Q value = 0.19

Table S554. Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HLA-C MUTATED	0	3	6	3
HLA-C WILD-TYPE	33	75	45	84

'HLA-C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.065

Table S555. Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HLA-C MUTATED	7	0	1	3	1
HLA-C WILD-TYPE	58	59	41	31	56

Figure S338. Get High-res Image Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HLA-C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.005

Table S556. Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HLA-C MUTATED	2	0	0	1	2	1	6
HLA-C WILD-TYPE	34	21	48	55	37	36	14

Figure S339. Get High-res Image Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HLA-C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.16

Table S557. Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HLA-C MUTATED	10	2	1
HLA-C WILD-TYPE	116	94	66

'HLA-C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.33

Table S558. Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HLA-C MUTATED	4	7	1	1
HLA-C WILD-TYPE	52	98	59	67

'HLA-C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.8

Table S559. Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HLA-C MUTATED	2	0	2	3	0	1
HLA-C WILD-TYPE	32	18	57	35	19	42

'HLA-C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S560. Gene #56: 'HLA-C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HLA-C MUTATED	6	1	1
HLA-C WILD-TYPE	116	50	37

'PRSS36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.17

Table S561. Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRSS36 MUTATED	0	7	2	1	1
PRSS36 WILD-TYPE	79	119	25	42	11

'PRSS36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.078

Table S562. Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRSS36 MUTATED	0	5	1	0
PRSS36 WILD-TYPE	71	71	33	63

Figure S340. Get High-res Image Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRSS36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.39

Table S563. Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PRSS36 MUTATED	6	2	3
PRSS36 WILD-TYPE	72	84	82

'PRSS36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.36

Table S564. Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PRSS36 MUTATED	1	3	5	2
PRSS36 WILD-TYPE	32	75	46	85

'PRSS36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 0.18

Table S565. Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PRSS36 MUTATED	5	1	2	0	0
PRSS36 WILD-TYPE	60	58	40	34	57

'PRSS36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.29

Table S566. Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PRSS36 MUTATED	2	0	0	3	1	0	2
PRSS36 WILD-TYPE	34	21	48	53	38	37	18

'PRSS36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.16

Table S567. Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PRSS36 MUTATED	8	3	0
PRSS36 WILD-TYPE	118	93	67

'PRSS36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.058

Table S568. Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PRSS36 MUTATED	6	1	3	1
PRSS36 WILD-TYPE	50	104	57	67

Figure S341. Get High-res Image Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PRSS36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S569. Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PRSS36 MUTATED	1	0	3	1	0	1
PRSS36 WILD-TYPE	33	18	56	37	19	42

'PRSS36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.49

Table S570. Gene #57: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PRSS36 MUTATED	2	2	2
PRSS36 WILD-TYPE	120	49	36

'ZFHX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S571. Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZFHX4 MUTATED	6	36	1	4	5
ZFHX4 WILD-TYPE	73	90	26	39	7

Figure S342. Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZFHX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00092 (Fisher's exact test), Q value = 0.012

Table S572. Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZFHX4 MUTATED	6	22	8	5
ZFHX4 WILD-TYPE	65	54	26	58

Figure S343. Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFHX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.081

Table S573. Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZFHX4 MUTATED	19	8	18
ZFHX4 WILD-TYPE	59	78	67

Figure S344. Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZFHX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0363 (Fisher's exact test), Q value = 0.11

Table S574. Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZFHX4 MUTATED	7	11	16	11
ZFHX4 WILD-TYPE	26	67	35	76

Figure S345. Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZFHX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S575. Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZFHX4 MUTATED	27	4	5	7	5
ZFHX4 WILD-TYPE	38	55	37	27	52

Figure S346. Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S576. Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZFHX4 MUTATED	11	3	0	9	9	4	12
ZFHX4 WILD-TYPE	25	18	48	47	30	33	8

Figure S347. Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S577. Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZFHX4 MUTATED	38	9	6
ZFHX4 WILD-TYPE	88	87	61

Figure S348. Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0024

Table S578. Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZFHX4 MUTATED	23	18	5	7
ZFHX4 WILD-TYPE	33	87	55	61

Figure S349. Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.085

Table S579. Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZFHX4 MUTATED	5	4	13	10	4	1
ZFHX4 WILD-TYPE	29	14	46	28	15	42

Figure S350. Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00082 (Fisher's exact test), Q value = 0.012

Table S580. Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZFHX4 MUTATED	22	2	13
ZFHX4 WILD-TYPE	100	49	25

Figure S351. Get High-res Image Gene #58: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C6ORF89 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.56

Table S581. Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C6ORF89 MUTATED	1	6	1	0	0
C6ORF89 WILD-TYPE	78	120	26	43	12

'C6ORF89 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.075

Table S582. Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C6ORF89 MUTATED	1	7	1	0
C6ORF89 WILD-TYPE	70	69	33	63

Figure S352. Get High-res Image Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C6ORF89 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.091

Table S583. Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C6ORF89 MUTATED	5	0	2
C6ORF89 WILD-TYPE	73	86	83

Figure S353. Get High-res Image Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C6ORF89 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.21

Table S584. Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C6ORF89 MUTATED	1	1	4	1
C6ORF89 WILD-TYPE	32	77	47	86

'C6ORF89 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.078

Table S585. Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C6ORF89 MUTATED	6	0	0	2	1
C6ORF89 WILD-TYPE	59	59	42	32	56

Figure S354. Get High-res Image Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C6ORF89 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00779 (Fisher's exact test), Q value = 0.045

Table S586. Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C6ORF89 MUTATED	0	0	0	1	4	1	3
C6ORF89 WILD-TYPE	36	21	48	55	35	36	17

Figure S355. Get High-res Image Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.26

Table S587. Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C6ORF89 MUTATED	7	1	1
C6ORF89 WILD-TYPE	119	95	66

'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0277 (Fisher's exact test), Q value = 0.094

Table S588. Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C6ORF89 MUTATED	4	5	0	0
C6ORF89 WILD-TYPE	52	100	60	68

Figure S356. Get High-res Image Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 0.16

Table S589. Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C6ORF89 MUTATED	3	2	1	3	0	0
C6ORF89 WILD-TYPE	31	16	58	35	19	43

'C6ORF89 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00868 (Fisher's exact test), Q value = 0.048

Table S590. Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C6ORF89 MUTATED	4	0	5
C6ORF89 WILD-TYPE	118	51	33

Figure S357. Get High-res Image Gene #59: 'C6ORF89 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC16A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.37

Table S591. Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC16A6 MUTATED	0	6	0	1	0
SLC16A6 WILD-TYPE	79	120	27	42	12

'SLC16A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.078

Table S592. Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC16A6 MUTATED	0	5	1	0
SLC16A6 WILD-TYPE	71	71	33	63

Figure S358. Get High-res Image Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC16A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.41

Table S593. Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC16A6 MUTATED	4	1	1
SLC16A6 WILD-TYPE	74	85	84

'SLC16A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 0.89

Table S594. Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC16A6 MUTATED	0	2	2	2
SLC16A6 WILD-TYPE	33	76	49	85

'SLC16A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.45

Table S595. Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC16A6 MUTATED	4	1	1	1	0
SLC16A6 WILD-TYPE	61	58	41	33	57

'SLC16A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.51

Table S596. Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC16A6 MUTATED	2	0	0	2	2	0	1
SLC16A6 WILD-TYPE	34	21	48	54	37	37	19

'SLC16A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.41

Table S597. Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC16A6 MUTATED	5	2	0
SLC16A6 WILD-TYPE	121	94	67

'SLC16A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.22

Table S598. Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC16A6 MUTATED	2	5	0	0
SLC16A6 WILD-TYPE	54	100	60	68

'SLC16A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S599. Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLC16A6 MUTATED	2	1	0	2	0	0
SLC16A6 WILD-TYPE	32	17	59	36	19	43

'SLC16A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.41

Table S600. Gene #60: 'SLC16A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLC16A6 MUTATED	3	0	2
SLC16A6 WILD-TYPE	119	51	36

'PAFAH1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.089

Table S601. Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PAFAH1B1 MUTATED	0	10	1	0	0
PAFAH1B1 WILD-TYPE	79	116	26	43	12

Figure S359. Get High-res Image Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.063

Table S602. Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PAFAH1B1 MUTATED	0	7	1	1
PAFAH1B1 WILD-TYPE	71	69	33	62

Figure S360. Get High-res Image Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00709 (Fisher's exact test), Q value = 0.042

Table S603. Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PAFAH1B1 MUTATED	7	0	3
PAFAH1B1 WILD-TYPE	71	86	82

Figure S361. Get High-res Image Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.01

Table S604. Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PAFAH1B1 MUTATED	1	2	7	0
PAFAH1B1 WILD-TYPE	32	76	44	87

Figure S362. Get High-res Image Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PAFAH1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.11

Table S605. Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PAFAH1B1 MUTATED	7	1	2	1	0
PAFAH1B1 WILD-TYPE	58	58	40	33	57

Figure S363. Get High-res Image Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0496 (Fisher's exact test), Q value = 0.13

Table S606. Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PAFAH1B1 MUTATED	2	0	0	3	3	0	3
PAFAH1B1 WILD-TYPE	34	21	48	53	36	37	17

Figure S364. Get High-res Image Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.092

Table S607. Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PAFAH1B1 MUTATED	10	1	1
PAFAH1B1 WILD-TYPE	116	95	66

Figure S365. Get High-res Image Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.069

Table S608. Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PAFAH1B1 MUTATED	7	3	1	1
PAFAH1B1 WILD-TYPE	49	102	59	67

Figure S366. Get High-res Image Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.87

Table S609. Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PAFAH1B1 MUTATED	2	0	4	2	0	1
PAFAH1B1 WILD-TYPE	32	18	55	36	19	42

'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.22

Table S610. Gene #61: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PAFAH1B1 MUTATED	4	1	4
PAFAH1B1 WILD-TYPE	118	50	34

'WDR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.46

Table S611. Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WDR5 MUTATED	0	5	1	1	0
WDR5 WILD-TYPE	79	121	26	42	12

'WDR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S612. Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WDR5 MUTATED	1	2	0	1
WDR5 WILD-TYPE	70	74	34	62

'WDR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.71

Table S613. Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
WDR5 MUTATED	3	3	1
WDR5 WILD-TYPE	75	83	84

'WDR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.17

Table S614. Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
WDR5 MUTATED	2	0	3	2
WDR5 WILD-TYPE	31	78	48	85

'WDR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S615. Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
WDR5 MUTATED	1	2	1	1	1
WDR5 WILD-TYPE	64	57	41	33	56

'WDR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.13

Table S616. Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
WDR5 MUTATED	4	0	0	1	1	0	0
WDR5 WILD-TYPE	32	21	48	55	38	37	20

Figure S367. Get High-res Image Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WDR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.18

Table S617. Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
WDR5 MUTATED	6	1	0
WDR5 WILD-TYPE	120	95	67

'WDR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 0.85

Table S618. Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
WDR5 MUTATED	1	4	1	1
WDR5 WILD-TYPE	55	101	59	67

'WDR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.55

Table S619. Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
WDR5 MUTATED	1	1	2	0	0	0
WDR5 WILD-TYPE	33	17	57	38	19	43

'WDR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.31

Table S620. Gene #62: 'WDR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
WDR5 MUTATED	2	0	2
WDR5 WILD-TYPE	120	51	36

'DDX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00304 (Fisher's exact test), Q value = 0.026

Table S621. Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DDX6 MUTATED	0	13	1	0	1
DDX6 WILD-TYPE	79	113	26	43	11

Figure S368. Get High-res Image Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.27

Table S622. Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DDX6 MUTATED	0	4	2	3
DDX6 WILD-TYPE	71	72	32	60

'DDX6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.13

Table S623. Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DDX6 MUTATED	7	1	5
DDX6 WILD-TYPE	71	85	80

Figure S369. Get High-res Image Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DDX6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0459 (Fisher's exact test), Q value = 0.13

Table S624. Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DDX6 MUTATED	4	4	4	1
DDX6 WILD-TYPE	29	74	47	86

Figure S370. Get High-res Image Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S625. Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DDX6 MUTATED	7	1	2	1	0
DDX6 WILD-TYPE	58	58	40	33	57

Figure S371. Get High-res Image Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DDX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 0.12

Table S626. Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DDX6 MUTATED	3	0	0	3	2	0	3
DDX6 WILD-TYPE	33	21	48	53	37	37	17

Figure S372. Get High-res Image Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DDX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00832 (Fisher's exact test), Q value = 0.047

Table S627. Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DDX6 MUTATED	12	3	0
DDX6 WILD-TYPE	114	93	67

Figure S373. Get High-res Image Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0025 (Fisher's exact test), Q value = 0.023

Table S628. Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DDX6 MUTATED	9	3	2	1
DDX6 WILD-TYPE	47	102	58	67

Figure S374. Get High-res Image Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.4

Table S629. Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DDX6 MUTATED	0	0	5	3	0	1
DDX6 WILD-TYPE	34	18	54	35	19	42

'DDX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S630. Gene #63: 'DDX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DDX6 MUTATED	6	2	1
DDX6 WILD-TYPE	116	49	37

'C9ORF131 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.064

Table S631. Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C9ORF131 MUTATED	1	10	0	0	2
C9ORF131 WILD-TYPE	78	116	27	43	10

Figure S375. Get High-res Image Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C9ORF131 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.063

Table S632. Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C9ORF131 MUTATED	0	7	1	1
C9ORF131 WILD-TYPE	71	69	33	62

Figure S376. Get High-res Image Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C9ORF131 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.54

Table S633. Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C9ORF131 MUTATED	5	3	2
C9ORF131 WILD-TYPE	73	83	83

'C9ORF131 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 0.16

Table S634. Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C9ORF131 MUTATED	2	1	5	2
C9ORF131 WILD-TYPE	31	77	46	85

'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.16

Table S635. Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C9ORF131 MUTATED	5	1	1	3	0
C9ORF131 WILD-TYPE	60	58	41	31	57

'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0583 (Fisher's exact test), Q value = 0.15

Table S636. Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C9ORF131 MUTATED	2	0	0	3	2	0	3
C9ORF131 WILD-TYPE	34	21	48	53	37	37	17

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.16

Table S637. Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C9ORF131 MUTATED	10	2	1
C9ORF131 WILD-TYPE	116	94	66

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00366 (Fisher's exact test), Q value = 0.029

Table S638. Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C9ORF131 MUTATED	8	2	2	1
C9ORF131 WILD-TYPE	48	103	58	67

Figure S377. Get High-res Image Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.57

Table S639. Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C9ORF131 MUTATED	1	1	4	1	0	0
C9ORF131 WILD-TYPE	33	17	55	37	19	43

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 0.82

Table S640. Gene #64: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C9ORF131 MUTATED	4	1	2
C9ORF131 WILD-TYPE	118	50	36

'PLOD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0988 (Fisher's exact test), Q value = 0.2

Table S641. Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLOD3 MUTATED	2	10	0	0	1
PLOD3 WILD-TYPE	77	116	27	43	11

'PLOD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.19

Table S642. Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLOD3 MUTATED	2	8	1	1
PLOD3 WILD-TYPE	69	68	33	62

'PLOD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.52

Table S643. Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PLOD3 MUTATED	6	3	3
PLOD3 WILD-TYPE	72	83	82

'PLOD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.38

Table S644. Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PLOD3 MUTATED	3	3	4	2
PLOD3 WILD-TYPE	30	75	47	85

'PLOD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.21

Table S645. Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PLOD3 MUTATED	8	1	1	2	2
PLOD3 WILD-TYPE	57	58	41	32	55

'PLOD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.53

Table S646. Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PLOD3 MUTATED	3	0	1	2	4	2	2
PLOD3 WILD-TYPE	33	21	47	54	35	35	18

'PLOD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.35

Table S647. Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PLOD3 MUTATED	9	2	3
PLOD3 WILD-TYPE	117	94	64

'PLOD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.27

Table S648. Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PLOD3 MUTATED	6	5	1	2
PLOD3 WILD-TYPE	50	100	59	66

'PLOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.65

Table S649. Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PLOD3 MUTATED	3	2	3	2	0	1
PLOD3 WILD-TYPE	31	16	56	36	19	42

'PLOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0588 (Fisher's exact test), Q value = 0.15

Table S650. Gene #65: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PLOD3 MUTATED	5	1	5
PLOD3 WILD-TYPE	117	50	33

'ZNF878 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.091

Table S651. Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF878 MUTATED	0	10	0	1	1
ZNF878 WILD-TYPE	79	116	27	42	11

Figure S378. Get High-res Image Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF878 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0024

Table S652. Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF878 MUTATED	0	9	0	0
ZNF878 WILD-TYPE	71	67	34	63

Figure S379. Get High-res Image Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF878 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 0.2

Table S653. Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZNF878 MUTATED	6	1	3
ZNF878 WILD-TYPE	72	85	82

'ZNF878 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0052

Table S654. Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZNF878 MUTATED	0	1	8	1
ZNF878 WILD-TYPE	33	77	43	86

Figure S380. Get High-res Image Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.01

Table S655. Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF878 MUTATED	8	0	0	0	1
ZNF878 WILD-TYPE	57	59	42	34	56

Figure S381. Get High-res Image Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.063

Table S656. Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF878 MUTATED	0	0	0	3	3	0	3
ZNF878 WILD-TYPE	36	21	48	53	36	37	17

Figure S382. Get High-res Image Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00247 (Fisher's exact test), Q value = 0.023

Table S657. Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF878 MUTATED	11	1	0
ZNF878 WILD-TYPE	115	95	67

Figure S383. Get High-res Image Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S658. Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF878 MUTATED	9	2	1	0
ZNF878 WILD-TYPE	47	103	59	68

Figure S384. Get High-res Image Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.59

Table S659. Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZNF878 MUTATED	1	1	4	2	0	0
ZNF878 WILD-TYPE	33	17	55	36	19	43

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.49

Table S660. Gene #66: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZNF878 MUTATED	4	1	3
ZNF878 WILD-TYPE	118	50	35

'SPG20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.054

Table S661. Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SPG20 MUTATED	2	14	0	2	3
SPG20 WILD-TYPE	77	112	27	41	9

Figure S385. Get High-res Image Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPG20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00496 (Fisher's exact test), Q value = 0.034

Table S662. Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SPG20 MUTATED	0	9	3	2
SPG20 WILD-TYPE	71	67	31	61

Figure S386. Get High-res Image Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPG20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 0.18

Table S663. Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SPG20 MUTATED	10	5	3
SPG20 WILD-TYPE	68	81	82

'SPG20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0807 (Fisher's exact test), Q value = 0.18

Table S664. Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SPG20 MUTATED	4	3	7	4
SPG20 WILD-TYPE	29	75	44	83

'SPG20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.017

Table S665. Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SPG20 MUTATED	13	2	1	1	2
SPG20 WILD-TYPE	52	57	41	33	55

Figure S387. Get High-res Image Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SPG20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00179 (Fisher's exact test), Q value = 0.019

Table S666. Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SPG20 MUTATED	4	1	1	3	2	1	7
SPG20 WILD-TYPE	32	20	47	53	37	36	13

Figure S388. Get High-res Image Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.052

Table S667. Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SPG20 MUTATED	16	3	2
SPG20 WILD-TYPE	110	93	65

Figure S389. Get High-res Image Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0031

Table S668. Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SPG20 MUTATED	13	5	2	1
SPG20 WILD-TYPE	43	100	58	67

Figure S390. Get High-res Image Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.42

Table S669. Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SPG20 MUTATED	2	0	3	5	0	1
SPG20 WILD-TYPE	32	18	56	33	19	42

'SPG20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0573 (Fisher's exact test), Q value = 0.15

Table S670. Gene #67: 'SPG20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SPG20 MUTATED	5	1	5
SPG20 WILD-TYPE	117	50	33

'C14ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.0073

Table S671. Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C14ORF43 MUTATED	0	18	0	2	0
C14ORF43 WILD-TYPE	79	108	27	41	12

Figure S391. Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C14ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0044

Table S672. Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C14ORF43 MUTATED	0	13	1	2
C14ORF43 WILD-TYPE	71	63	33	61

Figure S392. Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C14ORF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00936 (Fisher's exact test), Q value = 0.05

Table S673. Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C14ORF43 MUTATED	11	2	4
C14ORF43 WILD-TYPE	67	84	81

Figure S393. Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C14ORF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S674. Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C14ORF43 MUTATED	0	3	12	2
C14ORF43 WILD-TYPE	33	75	39	85

Figure S394. Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.15

Table S675. Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C14ORF43 MUTATED	9	2	2	1	1
C14ORF43 WILD-TYPE	56	57	40	33	56

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00752 (Fisher's exact test), Q value = 0.044

Table S676. Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C14ORF43 MUTATED	4	0	0	4	3	0	4
C14ORF43 WILD-TYPE	32	21	48	52	36	37	16

Figure S395. Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.01

Table S677. Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C14ORF43 MUTATED	17	2	1
C14ORF43 WILD-TYPE	109	94	66

Figure S396. Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0043

Table S678. Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C14ORF43 MUTATED	11	7	2	0
C14ORF43 WILD-TYPE	45	98	58	68

Figure S397. Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.64

Table S679. Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C14ORF43 MUTATED	3	1	5	4	0	1
C14ORF43 WILD-TYPE	31	17	54	34	19	42

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.06

Table S680. Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C14ORF43 MUTATED	5	2	7
C14ORF43 WILD-TYPE	117	49	31

Figure S398. Get High-res Image Gene #68: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.0061

Table S681. Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FLNB MUTATED	0	20	1	2	1
FLNB WILD-TYPE	79	106	26	41	11

Figure S399. Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FLNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S682. Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FLNB MUTATED	1	16	0	4
FLNB WILD-TYPE	70	60	34	59

Figure S400. Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FLNB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.059

Table S683. Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FLNB MUTATED	13	4	4
FLNB WILD-TYPE	65	82	81

Figure S401. Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FLNB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.1

Table S684. Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FLNB MUTATED	2	4	10	5
FLNB WILD-TYPE	31	74	41	82

Figure S402. Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00542 (Fisher's exact test), Q value = 0.036

Table S685. Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FLNB MUTATED	12	3	1	3	1
FLNB WILD-TYPE	53	56	41	31	56

Figure S403. Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FLNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00088 (Fisher's exact test), Q value = 0.012

Table S686. Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FLNB MUTATED	3	0	1	3	5	1	7
FLNB WILD-TYPE	33	21	47	53	34	36	13

Figure S404. Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.077

Table S687. Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FLNB MUTATED	17	5	2
FLNB WILD-TYPE	109	91	65

Figure S405. Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FLNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0038

Table S688. Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FLNB MUTATED	13	8	2	1
FLNB WILD-TYPE	43	97	58	67

Figure S406. Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.4

Table S689. Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FLNB MUTATED	5	3	3	5	1	2
FLNB WILD-TYPE	29	15	56	33	18	41

'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00072 (Fisher's exact test), Q value = 0.011

Table S690. Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FLNB MUTATED	7	2	10
FLNB WILD-TYPE	115	49	28

Figure S407. Get High-res Image Gene #69: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GLI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00565 (Fisher's exact test), Q value = 0.036

Table S691. Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GLI1 MUTATED	0	12	2	1	2
GLI1 WILD-TYPE	79	114	25	42	10

Figure S408. Get High-res Image Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00559 (Fisher's exact test), Q value = 0.036

Table S692. Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GLI1 MUTATED	0	8	2	1
GLI1 WILD-TYPE	71	68	32	62

Figure S409. Get High-res Image Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GLI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.47

Table S693. Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GLI1 MUTATED	7	3	5
GLI1 WILD-TYPE	71	83	80

'GLI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.27

Table S694. Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GLI1 MUTATED	3	3	6	3
GLI1 WILD-TYPE	30	75	45	84

'GLI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00335 (Fisher's exact test), Q value = 0.027

Table S695. Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GLI1 MUTATED	10	2	1	2	0
GLI1 WILD-TYPE	55	57	41	32	57

Figure S410. Get High-res Image Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GLI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0043

Table S696. Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GLI1 MUTATED	3	0	0	5	1	0	6
GLI1 WILD-TYPE	33	21	48	51	38	37	14

Figure S411. Get High-res Image Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 0.2

Table S697. Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GLI1 MUTATED	12	3	2
GLI1 WILD-TYPE	114	93	65

'GLI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00139 (Fisher's exact test), Q value = 0.016

Table S698. Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GLI1 MUTATED	9	6	2	0
GLI1 WILD-TYPE	47	99	58	68

Figure S412. Get High-res Image Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.4

Table S699. Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GLI1 MUTATED	0	1	4	4	0	1
GLI1 WILD-TYPE	34	17	55	34	19	42

'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.55

Table S700. Gene #70: 'GLI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GLI1 MUTATED	6	1	3
GLI1 WILD-TYPE	116	50	35

'PLAGL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.69

Table S701. Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLAGL2 MUTATED	1	4	1	0	0
PLAGL2 WILD-TYPE	78	122	26	43	12

'PLAGL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 0.88

Table S702. Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLAGL2 MUTATED	1	3	1	2
PLAGL2 WILD-TYPE	70	73	33	61

'PLAGL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.56

Table S703. Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PLAGL2 MUTATED	3	1	2
PLAGL2 WILD-TYPE	75	85	83

'PLAGL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S704. Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PLAGL2 MUTATED	0	1	3	2
PLAGL2 WILD-TYPE	33	77	48	85

'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.43

Table S705. Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PLAGL2 MUTATED	4	1	0	0	1
PLAGL2 WILD-TYPE	61	58	42	34	56

'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.31

Table S706. Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PLAGL2 MUTATED	2	0	0	0	2	1	1
PLAGL2 WILD-TYPE	34	21	48	56	37	36	19

'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S707. Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PLAGL2 MUTATED	3	2	2
PLAGL2 WILD-TYPE	123	94	65

'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.38

Table S708. Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PLAGL2 MUTATED	3	1	2	1
PLAGL2 WILD-TYPE	53	104	58	67

'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.74

Table S709. Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PLAGL2 MUTATED	1	0	2	1	2	1
PLAGL2 WILD-TYPE	33	18	57	37	17	42

'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 0.81

Table S710. Gene #71: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PLAGL2 MUTATED	4	1	2
PLAGL2 WILD-TYPE	118	50	36

'WNT16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00761 (Fisher's exact test), Q value = 0.044

Table S711. Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WNT16 MUTATED	0	12	1	0	0
WNT16 WILD-TYPE	79	114	26	43	12

Figure S413. Get High-res Image Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WNT16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.059

Table S712. Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WNT16 MUTATED	0	7	2	1
WNT16 WILD-TYPE	71	69	32	62

Figure S414. Get High-res Image Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WNT16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S713. Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
WNT16 MUTATED	6	1	4
WNT16 WILD-TYPE	72	85	81

'WNT16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00265 (Fisher's exact test), Q value = 0.024

Table S714. Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
WNT16 MUTATED	2	1	7	1
WNT16 WILD-TYPE	31	77	44	86

Figure S415. Get High-res Image Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WNT16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.006

Table S715. Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
WNT16 MUTATED	10	1	0	1	0
WNT16 WILD-TYPE	55	58	42	33	57

Figure S416. Get High-res Image Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WNT16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S716. Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
WNT16 MUTATED	2	1	0	1	1	0	7
WNT16 WILD-TYPE	34	20	48	55	38	37	13

Figure S417. Get High-res Image Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00148 (Fisher's exact test), Q value = 0.017

Table S717. Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
WNT16 MUTATED	12	1	0
WNT16 WILD-TYPE	114	95	67

Figure S418. Get High-res Image Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00269 (Fisher's exact test), Q value = 0.024

Table S718. Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
WNT16 MUTATED	6	7	0	0
WNT16 WILD-TYPE	50	98	60	68

Figure S419. Get High-res Image Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.64

Table S719. Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
WNT16 MUTATED	2	1	3	2	0	0
WNT16 WILD-TYPE	32	17	56	36	19	43

'WNT16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.087

Table S720. Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
WNT16 MUTATED	4	0	4
WNT16 WILD-TYPE	118	51	34

Figure S420. Get High-res Image Gene #72: 'WNT16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IRF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.57

Table S721. Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IRF2 MUTATED	2	9	1	1	1
IRF2 WILD-TYPE	77	117	26	42	11

'IRF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.6

Table S722. Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IRF2 MUTATED	2	5	1	1
IRF2 WILD-TYPE	69	71	33	62

'IRF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.16

Table S723. Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IRF2 MUTATED	8	2	3
IRF2 WILD-TYPE	70	84	82

'IRF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.44

Table S724. Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IRF2 MUTATED	2	2	5	4
IRF2 WILD-TYPE	31	76	46	83

'IRF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.47

Table S725. Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IRF2 MUTATED	6	2	1	1	1
IRF2 WILD-TYPE	59	57	41	33	56

'IRF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.66

Table S726. Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IRF2 MUTATED	3	0	1	3	1	1	2
IRF2 WILD-TYPE	33	21	47	53	38	36	18

'IRF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.081

Table S727. Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IRF2 MUTATED	11	1	2
IRF2 WILD-TYPE	115	95	65

Figure S421. Get High-res Image Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IRF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0277 (Fisher's exact test), Q value = 0.094

Table S728. Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IRF2 MUTATED	7	5	1	1
IRF2 WILD-TYPE	49	100	59	67

Figure S422. Get High-res Image Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.43

Table S729. Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IRF2 MUTATED	1	0	5	1	1	0
IRF2 WILD-TYPE	33	18	54	37	18	43

'IRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S730. Gene #73: 'IRF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IRF2 MUTATED	6	1	1
IRF2 WILD-TYPE	116	50	37

'SPTY2D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.75

Table S731. Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SPTY2D1 MUTATED	3	9	2	1	0
SPTY2D1 WILD-TYPE	76	117	25	42	12

'SPTY2D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.23

Table S732. Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SPTY2D1 MUTATED	3	8	0	2
SPTY2D1 WILD-TYPE	68	68	34	61

'SPTY2D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.28

Table S733. Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SPTY2D1 MUTATED	7	2	5
SPTY2D1 WILD-TYPE	71	84	80

'SPTY2D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.35

Table S734. Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SPTY2D1 MUTATED	1	4	6	3
SPTY2D1 WILD-TYPE	32	74	45	84

'SPTY2D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.058

Table S735. Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SPTY2D1 MUTATED	8	0	2	1	1
SPTY2D1 WILD-TYPE	57	59	40	33	56

Figure S423. Get High-res Image Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SPTY2D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00538 (Fisher's exact test), Q value = 0.036

Table S736. Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SPTY2D1 MUTATED	2	0	0	2	2	1	5
SPTY2D1 WILD-TYPE	34	21	48	54	37	36	15

Figure S424. Get High-res Image Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.31

Table S737. Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SPTY2D1 MUTATED	9	2	4
SPTY2D1 WILD-TYPE	117	94	63

'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.33

Table S738. Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SPTY2D1 MUTATED	6	5	1	3
SPTY2D1 WILD-TYPE	50	100	59	65

'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S739. Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SPTY2D1 MUTATED	2	1	5	5	0	0
SPTY2D1 WILD-TYPE	32	17	54	33	19	43

'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.21

Table S740. Gene #74: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SPTY2D1 MUTATED	7	1	5
SPTY2D1 WILD-TYPE	115	50	33

'GPSM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.26

Table S741. Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPSM3 MUTATED	1	6	1	2	2
GPSM3 WILD-TYPE	78	120	26	41	10

'GPSM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 0.12

Table S742. Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPSM3 MUTATED	1	7	0	1
GPSM3 WILD-TYPE	70	69	34	62

Figure S425. Get High-res Image Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPSM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00173 (Fisher's exact test), Q value = 0.018

Table S743. Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GPSM3 MUTATED	7	1	0
GPSM3 WILD-TYPE	71	85	85

Figure S426. Get High-res Image Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPSM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.38

Table S744. Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GPSM3 MUTATED	2	2	3	1
GPSM3 WILD-TYPE	31	76	48	86

'GPSM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.35

Table S745. Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GPSM3 MUTATED	4	0	3	2	2
GPSM3 WILD-TYPE	61	59	39	32	55

'GPSM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0283 (Fisher's exact test), Q value = 0.095

Table S746. Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GPSM3 MUTATED	1	0	0	5	2	0	3
GPSM3 WILD-TYPE	35	21	48	51	37	37	17

Figure S427. Get High-res Image Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPSM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.092

Table S747. Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GPSM3 MUTATED	10	1	1
GPSM3 WILD-TYPE	116	95	66

Figure S428. Get High-res Image Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPSM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.035 (Fisher's exact test), Q value = 0.11

Table S748. Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GPSM3 MUTATED	6	4	0	2
GPSM3 WILD-TYPE	50	101	60	66

Figure S429. Get High-res Image Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPSM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.097

Table S749. Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GPSM3 MUTATED	1	2	0	2	0	0
GPSM3 WILD-TYPE	33	16	59	36	19	43

Figure S430. Get High-res Image Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GPSM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0589 (Fisher's exact test), Q value = 0.15

Table S750. Gene #75: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GPSM3 MUTATED	2	0	3
GPSM3 WILD-TYPE	120	51	35

'STAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.09

Table S751. Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STAT2 MUTATED	0	5	2	1	2
STAT2 WILD-TYPE	79	121	25	42	10

Figure S431. Get High-res Image Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'STAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 0.2

Table S752. Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STAT2 MUTATED	0	5	1	1
STAT2 WILD-TYPE	71	71	33	62

'STAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0918 (Fisher's exact test), Q value = 0.2

Table S753. Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
STAT2 MUTATED	6	1	2
STAT2 WILD-TYPE	72	85	83

'STAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.17

Table S754. Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
STAT2 MUTATED	1	2	5	1
STAT2 WILD-TYPE	32	76	46	86

'STAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.063

Table S755. Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
STAT2 MUTATED	6	0	1	1	0
STAT2 WILD-TYPE	59	59	41	33	57

Figure S432. Get High-res Image Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.31

Table S756. Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
STAT2 MUTATED	1	0	0	3	2	0	2
STAT2 WILD-TYPE	35	21	48	53	37	37	18

'STAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.15

Table S757. Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
STAT2 MUTATED	8	2	0
STAT2 WILD-TYPE	118	94	67

'STAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00144 (Fisher's exact test), Q value = 0.016

Table S758. Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
STAT2 MUTATED	7	2	1	0
STAT2 WILD-TYPE	49	103	59	68

Figure S433. Get High-res Image Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'STAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.56

Table S759. Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
STAT2 MUTATED	1	2	1	1	0	1
STAT2 WILD-TYPE	33	16	58	37	19	42

'STAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S760. Gene #76: 'STAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
STAT2 MUTATED	3	1	2
STAT2 WILD-TYPE	119	50	36

'PRRG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.059 (Fisher's exact test), Q value = 0.15

Table S761. Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRRG3 MUTATED	0	8	0	0	0
PRRG3 WILD-TYPE	79	118	27	43	12

'PRRG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 0.19

Table S762. Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRRG3 MUTATED	0	1	2	3
PRRG3 WILD-TYPE	71	75	32	60

'PRRG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 0.19

Table S763. Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PRRG3 MUTATED	4	0	3
PRRG3 WILD-TYPE	74	86	82

'PRRG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0345 (Fisher's exact test), Q value = 0.11

Table S764. Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PRRG3 MUTATED	1	2	4	0
PRRG3 WILD-TYPE	32	76	47	87

Figure S434. Get High-res Image Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PRRG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S765. Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PRRG3 MUTATED	4	0	1	1	0
PRRG3 WILD-TYPE	61	59	41	33	57

'PRRG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.47

Table S766. Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PRRG3 MUTATED	2	1	0	1	1	0	1
PRRG3 WILD-TYPE	34	20	48	55	38	37	19

'PRRG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00417 (Fisher's exact test), Q value = 0.03

Table S767. Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PRRG3 MUTATED	8	0	0
PRRG3 WILD-TYPE	118	96	67

Figure S435. Get High-res Image Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRRG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0685 (Fisher's exact test), Q value = 0.16

Table S768. Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PRRG3 MUTATED	3	5	0	0
PRRG3 WILD-TYPE	53	100	60	68

'PRRG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.42

Table S769. Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PRRG3 MUTATED	0	0	4	1	0	0
PRRG3 WILD-TYPE	34	18	55	37	19	43

'PRRG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.57

Table S770. Gene #77: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PRRG3 MUTATED	4	0	1
PRRG3 WILD-TYPE	118	51	37

'TP53BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.35

Table S771. Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TP53BP2 MUTATED	1	9	1	1	1
TP53BP2 WILD-TYPE	78	117	26	42	11

'TP53BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.074

Table S772. Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TP53BP2 MUTATED	2	6	4	0
TP53BP2 WILD-TYPE	69	70	30	63

Figure S436. Get High-res Image Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53BP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00394 (Fisher's exact test), Q value = 0.03

Table S773. Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TP53BP2 MUTATED	8	0	4
TP53BP2 WILD-TYPE	70	86	81

Figure S437. Get High-res Image Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TP53BP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00739 (Fisher's exact test), Q value = 0.043

Table S774. Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TP53BP2 MUTATED	2	2	7	1
TP53BP2 WILD-TYPE	31	76	44	86

Figure S438. Get High-res Image Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TP53BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00652 (Fisher's exact test), Q value = 0.04

Table S775. Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TP53BP2 MUTATED	9	0	1	1	2
TP53BP2 WILD-TYPE	56	59	41	33	55

Figure S439. Get High-res Image Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TP53BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0261 (Fisher's exact test), Q value = 0.091

Table S776. Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TP53BP2 MUTATED	0	2	0	3	4	1	3
TP53BP2 WILD-TYPE	36	19	48	53	35	36	17

Figure S440. Get High-res Image Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.0072

Table S777. Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TP53BP2 MUTATED	13	0	1
TP53BP2 WILD-TYPE	113	96	66

Figure S441. Get High-res Image Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00582 (Fisher's exact test), Q value = 0.037

Table S778. Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TP53BP2 MUTATED	7	6	1	0
TP53BP2 WILD-TYPE	49	99	59	68

Figure S442. Get High-res Image Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.56

Table S779. Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TP53BP2 MUTATED	3	1	3	2	1	0
TP53BP2 WILD-TYPE	31	17	56	36	18	43

'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.22

Table S780. Gene #78: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TP53BP2 MUTATED	7	0	3
TP53BP2 WILD-TYPE	115	51	35

'BCOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.005

Table S781. Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BCOR MUTATED	0	18	2	0	1
BCOR WILD-TYPE	79	108	25	43	11

Figure S443. Get High-res Image Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S782. Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BCOR MUTATED	0	5	8	2
BCOR WILD-TYPE	71	71	26	61

Figure S444. Get High-res Image Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.25

Table S783. Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BCOR MUTATED	9	3	6
BCOR WILD-TYPE	69	83	79

'BCOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00276 (Fisher's exact test), Q value = 0.024

Table S784. Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BCOR MUTATED	3	5	9	1
BCOR WILD-TYPE	30	73	42	86

Figure S445. Get High-res Image Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00551 (Fisher's exact test), Q value = 0.036

Table S785. Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BCOR MUTATED	10	2	2	3	0
BCOR WILD-TYPE	55	57	40	31	57

Figure S446. Get High-res Image Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.0054

Table S786. Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BCOR MUTATED	5	4	0	1	3	0	4
BCOR WILD-TYPE	31	17	48	55	36	37	16

Figure S447. Get High-res Image Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00165 (Fisher's exact test), Q value = 0.018

Table S787. Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BCOR MUTATED	17	3	1
BCOR WILD-TYPE	109	93	66

Figure S448. Get High-res Image Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0267 (Fisher's exact test), Q value = 0.092

Table S788. Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BCOR MUTATED	7	11	2	1
BCOR WILD-TYPE	49	94	58	67

Figure S449. Get High-res Image Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.74

Table S789. Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BCOR MUTATED	1	1	5	4	0	2
BCOR WILD-TYPE	33	17	54	34	19	41

'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.26

Table S790. Gene #79: 'BCOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BCOR MUTATED	6	2	5
BCOR WILD-TYPE	116	49	33

'BCORL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.0072

Table S791. Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BCORL1 MUTATED	1	17	0	0	2
BCORL1 WILD-TYPE	78	109	27	43	10

Figure S450. Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCORL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00174 (Fisher's exact test), Q value = 0.018

Table S792. Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BCORL1 MUTATED	0	11	3	3
BCORL1 WILD-TYPE	71	65	31	60

Figure S451. Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCORL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S793. Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BCORL1 MUTATED	14	2	1
BCORL1 WILD-TYPE	64	84	84

Figure S452. Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCORL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0037

Table S794. Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BCORL1 MUTATED	5	1	9	2
BCORL1 WILD-TYPE	28	77	42	85

Figure S453. Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S795. Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BCORL1 MUTATED	12	0	1	5	0
BCORL1 WILD-TYPE	53	59	41	29	57

Figure S454. Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00051 (Fisher's exact test), Q value = 0.0085

Table S796. Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BCORL1 MUTATED	2	1	0	4	5	0	6
BCORL1 WILD-TYPE	34	20	48	52	34	37	14

Figure S455. Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0032

Table S797. Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BCORL1 MUTATED	18	1	1
BCORL1 WILD-TYPE	108	95	66

Figure S456. Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S798. Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BCORL1 MUTATED	10	10	0	0
BCORL1 WILD-TYPE	46	95	60	68

Figure S457. Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0612 (Fisher's exact test), Q value = 0.15

Table S799. Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BCORL1 MUTATED	1	1	8	3	0	0
BCORL1 WILD-TYPE	33	17	51	35	19	43

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 0.079

Table S800. Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BCORL1 MUTATED	8	0	5
BCORL1 WILD-TYPE	114	51	33

Figure S458. Get High-res Image Gene #80: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RALGAPB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 0.17

Table S801. Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RALGAPB MUTATED	3	11	2	0	2
RALGAPB WILD-TYPE	76	115	25	43	10

'RALGAPB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S802. Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RALGAPB MUTATED	3	8	2	1
RALGAPB WILD-TYPE	68	68	32	62

'RALGAPB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.2

Table S803. Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RALGAPB MUTATED	9	3	4
RALGAPB WILD-TYPE	69	83	81

'RALGAPB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.0058

Table S804. Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RALGAPB MUTATED	4	2	9	1
RALGAPB WILD-TYPE	29	76	42	86

Figure S459. Get High-res Image Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RALGAPB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.67

Table S805. Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RALGAPB MUTATED	6	2	3	1	2
RALGAPB WILD-TYPE	59	57	39	33	55

'RALGAPB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.55

Table S806. Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RALGAPB MUTATED	2	0	1	3	3	2	3
RALGAPB WILD-TYPE	34	21	47	53	36	35	17

'RALGAPB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.33

Table S807. Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RALGAPB MUTATED	11	3	4
RALGAPB WILD-TYPE	115	93	63

'RALGAPB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0196 (Fisher's exact test), Q value = 0.076

Table S808. Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RALGAPB MUTATED	9	4	3	2
RALGAPB WILD-TYPE	47	101	57	66

Figure S460. Get High-res Image Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RALGAPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.67

Table S809. Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RALGAPB MUTATED	4	1	3	1	0	2
RALGAPB WILD-TYPE	30	17	56	37	19	41

'RALGAPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.77

Table S810. Gene #81: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RALGAPB MUTATED	6	2	3
RALGAPB WILD-TYPE	116	49	35

'BAX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.27

Table S811. Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BAX MUTATED	0	3	1	1	1
BAX WILD-TYPE	79	123	26	42	11

'BAX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.061

Table S812. Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BAX MUTATED	0	5	0	0
BAX WILD-TYPE	71	71	34	63

Figure S461. Get High-res Image Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BAX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S813. Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BAX MUTATED	2	2	2
BAX WILD-TYPE	76	84	83

'BAX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S814. Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BAX MUTATED	1	0	3	2
BAX WILD-TYPE	32	78	48	85

'BAX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.32

Table S815. Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BAX MUTATED	3	0	1	1	0
BAX WILD-TYPE	62	59	41	33	57

'BAX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0057

Table S816. Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BAX MUTATED	0	0	0	1	0	0	4
BAX WILD-TYPE	36	21	48	55	39	37	16

Figure S462. Get High-res Image Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BAX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S817. Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BAX MUTATED	3	2	1
BAX WILD-TYPE	123	94	66

'BAX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.1

Table S818. Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BAX MUTATED	4	1	1	0
BAX WILD-TYPE	52	104	59	68

Figure S463. Get High-res Image Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.42

Table S819. Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BAX MUTATED	0	0	0	2	0	1
BAX WILD-TYPE	34	18	59	36	19	42

'BAX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.66

Table S820. Gene #82: 'BAX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BAX MUTATED	2	0	1
BAX WILD-TYPE	120	51	37

'ATP2A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00375 (Fisher's exact test), Q value = 0.029

Table S821. Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATP2A1 MUTATED	0	10	2	0	2
ATP2A1 WILD-TYPE	79	116	25	43	10

Figure S464. Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP2A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00057 (Fisher's exact test), Q value = 0.0091

Table S822. Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATP2A1 MUTATED	1	11	0	1
ATP2A1 WILD-TYPE	70	65	34	62

Figure S465. Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP2A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.3

Table S823. Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ATP2A1 MUTATED	5	1	5
ATP2A1 WILD-TYPE	73	85	80

'ATP2A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S824. Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ATP2A1 MUTATED	2	4	4	1
ATP2A1 WILD-TYPE	31	74	47	86

'ATP2A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00078 (Fisher's exact test), Q value = 0.011

Table S825. Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ATP2A1 MUTATED	7	0	2	5	0
ATP2A1 WILD-TYPE	58	59	40	29	57

Figure S466. Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATP2A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00771 (Fisher's exact test), Q value = 0.045

Table S826. Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ATP2A1 MUTATED	1	0	0	5	6	0	2
ATP2A1 WILD-TYPE	35	21	48	51	33	37	18

Figure S467. Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00138 (Fisher's exact test), Q value = 0.016

Table S827. Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ATP2A1 MUTATED	13	2	0
ATP2A1 WILD-TYPE	113	94	67

Figure S468. Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0032

Table S828. Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ATP2A1 MUTATED	10	4	0	1
ATP2A1 WILD-TYPE	46	101	60	67

Figure S469. Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S829. Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ATP2A1 MUTATED	2	3	4	3	0	0
ATP2A1 WILD-TYPE	32	15	55	35	19	43

'ATP2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S830. Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ATP2A1 MUTATED	3	0	9
ATP2A1 WILD-TYPE	119	51	29

Figure S470. Get High-res Image Gene #83: 'ATP2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.077

Table S831. Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC88A MUTATED	1	15	1	1	1
CCDC88A WILD-TYPE	78	111	26	42	11

Figure S471. Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC88A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00087 (Fisher's exact test), Q value = 0.012

Table S832. Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CCDC88A MUTATED	0	9	4	1
CCDC88A WILD-TYPE	71	67	30	62

Figure S472. Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC88A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00245 (Fisher's exact test), Q value = 0.023

Table S833. Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CCDC88A MUTATED	12	2	3
CCDC88A WILD-TYPE	66	84	82

Figure S473. Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CCDC88A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00639 (Fisher's exact test), Q value = 0.039

Table S834. Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CCDC88A MUTATED	6	3	6	2
CCDC88A WILD-TYPE	27	75	45	85

Figure S474. Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.012

Table S835. Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CCDC88A MUTATED	12	2	2	3	0
CCDC88A WILD-TYPE	53	57	40	31	57

Figure S475. Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00567 (Fisher's exact test), Q value = 0.036

Table S836. Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CCDC88A MUTATED	6	1	0	4	5	0	3
CCDC88A WILD-TYPE	30	20	48	52	34	37	17

Figure S476. Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S837. Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CCDC88A MUTATED	18	1	1
CCDC88A WILD-TYPE	108	95	66

Figure S477. Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00157 (Fisher's exact test), Q value = 0.017

Table S838. Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CCDC88A MUTATED	10	8	1	1
CCDC88A WILD-TYPE	46	97	59	67

Figure S478. Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.3

Table S839. Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CCDC88A MUTATED	2	1	8	1	0	1
CCDC88A WILD-TYPE	32	17	51	37	19	42

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0297 (Fisher's exact test), Q value = 0.098

Table S840. Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CCDC88A MUTATED	6	1	6
CCDC88A WILD-TYPE	116	50	32

Figure S479. Get High-res Image Gene #84: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.053

Table S841. Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BTBD7 MUTATED	0	14	2	2	0
BTBD7 WILD-TYPE	79	112	25	41	12

Figure S480. Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BTBD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00235 (Fisher's exact test), Q value = 0.022

Table S842. Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BTBD7 MUTATED	1	11	1	1
BTBD7 WILD-TYPE	70	65	33	62

Figure S481. Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BTBD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0047

Table S843. Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BTBD7 MUTATED	12	1	2
BTBD7 WILD-TYPE	66	85	83

Figure S482. Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BTBD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00047 (Fisher's exact test), Q value = 0.008

Table S844. Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BTBD7 MUTATED	3	4	8	0
BTBD7 WILD-TYPE	30	74	43	87

Figure S483. Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.16

Table S845. Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BTBD7 MUTATED	7	1	3	4	1
BTBD7 WILD-TYPE	58	58	39	30	56

'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0015 (Fisher's exact test), Q value = 0.017

Table S846. Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BTBD7 MUTATED	2	0	0	6	3	0	5
BTBD7 WILD-TYPE	34	21	48	50	36	37	15

Figure S484. Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0058

Table S847. Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BTBD7 MUTATED	16	1	1
BTBD7 WILD-TYPE	110	95	66

Figure S485. Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.0058

Table S848. Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BTBD7 MUTATED	10	7	1	0
BTBD7 WILD-TYPE	46	98	59	68

Figure S486. Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.11

Table S849. Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BTBD7 MUTATED	0	3	3	5	0	1
BTBD7 WILD-TYPE	34	15	56	33	19	42

Figure S487. Get High-res Image Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 0.2

Table S850. Gene #85: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BTBD7 MUTATED	6	1	5
BTBD7 WILD-TYPE	116	50	33

'ZC3H18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.24

Table S851. Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZC3H18 MUTATED	3	12	1	0	1
ZC3H18 WILD-TYPE	76	114	26	43	11

'ZC3H18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.079

Table S852. Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZC3H18 MUTATED	4	9	2	0
ZC3H18 WILD-TYPE	67	67	32	63

Figure S488. Get High-res Image Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZC3H18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.063

Table S853. Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZC3H18 MUTATED	9	3	1
ZC3H18 WILD-TYPE	69	83	84

Figure S489. Get High-res Image Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZC3H18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.28

Table S854. Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZC3H18 MUTATED	3	2	5	3
ZC3H18 WILD-TYPE	30	76	46	84

'ZC3H18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00516 (Fisher's exact test), Q value = 0.035

Table S855. Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZC3H18 MUTATED	9	0	3	3	1
ZC3H18 WILD-TYPE	56	59	39	31	56

Figure S490. Get High-res Image Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZC3H18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00414 (Fisher's exact test), Q value = 0.03

Table S856. Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZC3H18 MUTATED	3	0	0	2	6	1	4
ZC3H18 WILD-TYPE	33	21	48	54	33	36	16

Figure S491. Get High-res Image Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.062

Table S857. Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZC3H18 MUTATED	14	2	2
ZC3H18 WILD-TYPE	112	94	65

Figure S492. Get High-res Image Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.063

Table S858. Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZC3H18 MUTATED	9	5	1	3
ZC3H18 WILD-TYPE	47	100	59	65

Figure S493. Get High-res Image Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S859. Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZC3H18 MUTATED	4	2	5	2	0	0
ZC3H18 WILD-TYPE	30	16	54	36	19	43

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00608 (Fisher's exact test), Q value = 0.038

Table S860. Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZC3H18 MUTATED	5	1	7
ZC3H18 WILD-TYPE	117	50	31

Figure S494. Get High-res Image Gene #86: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC10A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S861. Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC10A6 MUTATED	0	6	1	0	0
SLC10A6 WILD-TYPE	79	120	26	43	12

'SLC10A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.14

Table S862. Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC10A6 MUTATED	0	5	0	1
SLC10A6 WILD-TYPE	71	71	34	62

'SLC10A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.22

Table S863. Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC10A6 MUTATED	3	0	4
SLC10A6 WILD-TYPE	75	86	81

'SLC10A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S864. Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC10A6 MUTATED	1	2	4	0
SLC10A6 WILD-TYPE	32	76	47	87

Figure S495. Get High-res Image Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC10A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00178 (Fisher's exact test), Q value = 0.019

Table S865. Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC10A6 MUTATED	7	0	1	0	0
SLC10A6 WILD-TYPE	58	59	41	34	57

Figure S496. Get High-res Image Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC10A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.21

Table S866. Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC10A6 MUTATED	2	0	0	2	4	0	0
SLC10A6 WILD-TYPE	34	21	48	54	35	37	20

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00445 (Fisher's exact test), Q value = 0.032

Table S867. Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC10A6 MUTATED	8	0	0
SLC10A6 WILD-TYPE	118	96	67

Figure S497. Get High-res Image Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0037

Table S868. Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC10A6 MUTATED	7	1	0	0
SLC10A6 WILD-TYPE	49	104	60	68

Figure S498. Get High-res Image Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.31

Table S869. Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLC10A6 MUTATED	3	1	1	1	0	0
SLC10A6 WILD-TYPE	31	17	58	37	19	43

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.07

Table S870. Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLC10A6 MUTATED	2	0	4
SLC10A6 WILD-TYPE	120	51	34

Figure S499. Get High-res Image Gene #87: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 0.2

Table S871. Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CR2 MUTATED	4	13	0	1	2
CR2 WILD-TYPE	75	113	27	42	10

'CR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.2

Table S872. Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CR2 MUTATED	3	8	5	2
CR2 WILD-TYPE	68	68	29	61

'CR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00742 (Fisher's exact test), Q value = 0.043

Table S873. Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CR2 MUTATED	10	1	4
CR2 WILD-TYPE	68	85	81

Figure S500. Get High-res Image Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00346 (Fisher's exact test), Q value = 0.028

Table S874. Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CR2 MUTATED	4	6	5	0
CR2 WILD-TYPE	29	72	46	87

Figure S501. Get High-res Image Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00164 (Fisher's exact test), Q value = 0.018

Table S875. Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CR2 MUTATED	12	0	3	1	4
CR2 WILD-TYPE	53	59	39	33	53

Figure S502. Get High-res Image Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0316 (Fisher's exact test), Q value = 0.1

Table S876. Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CR2 MUTATED	3	1	0	6	5	1	4
CR2 WILD-TYPE	33	20	48	50	34	36	16

Figure S503. Get High-res Image Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0054

Table S877. Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CR2 MUTATED	16	0	4
CR2 WILD-TYPE	110	96	63

Figure S504. Get High-res Image Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00853 (Fisher's exact test), Q value = 0.047

Table S878. Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CR2 MUTATED	8	9	0	3
CR2 WILD-TYPE	48	96	60	65

Figure S505. Get High-res Image Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S879. Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CR2 MUTATED	4	2	3	4	1	0
CR2 WILD-TYPE	30	16	56	34	18	43

'CR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00938 (Fisher's exact test), Q value = 0.05

Table S880. Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CR2 MUTATED	8	0	6
CR2 WILD-TYPE	114	51	32

Figure S506. Get High-res Image Gene #88: 'CR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARHGAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00539 (Fisher's exact test), Q value = 0.036

Table S881. Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARHGAP5 MUTATED	0	12	2	1	2
ARHGAP5 WILD-TYPE	79	114	25	42	10

Figure S507. Get High-res Image Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.066

Table S882. Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARHGAP5 MUTATED	0	8	3	3
ARHGAP5 WILD-TYPE	71	68	31	60

Figure S508. Get High-res Image Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.45

Table S883. Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ARHGAP5 MUTATED	7	3	4
ARHGAP5 WILD-TYPE	71	83	81

'ARHGAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.68

Table S884. Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ARHGAP5 MUTATED	1	4	5	4
ARHGAP5 WILD-TYPE	32	74	46	83

'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00332 (Fisher's exact test), Q value = 0.027

Table S885. Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ARHGAP5 MUTATED	10	2	1	2	0
ARHGAP5 WILD-TYPE	55	57	41	32	57

Figure S509. Get High-res Image Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.066

Table S886. Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ARHGAP5 MUTATED	2	1	0	4	4	0	4
ARHGAP5 WILD-TYPE	34	20	48	52	35	37	16

Figure S510. Get High-res Image Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.23

Table S887. Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ARHGAP5 MUTATED	11	5	1
ARHGAP5 WILD-TYPE	115	91	66

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.29

Table S888. Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ARHGAP5 MUTATED	7	5	3	2
ARHGAP5 WILD-TYPE	49	100	57	66

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S889. Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ARHGAP5 MUTATED	1	2	2	3	2	1
ARHGAP5 WILD-TYPE	33	16	57	35	17	42

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0578 (Fisher's exact test), Q value = 0.15

Table S890. Gene #89: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ARHGAP5 MUTATED	5	1	5
ARHGAP5 WILD-TYPE	117	50	33

'RASA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.45

Table S891. Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RASA1 MUTATED	5	9	2	0	1
RASA1 WILD-TYPE	74	117	25	43	11

'RASA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0906 (Fisher's exact test), Q value = 0.19

Table S892. Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RASA1 MUTATED	3	5	3	0
RASA1 WILD-TYPE	68	71	31	63

'RASA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00859 (Fisher's exact test), Q value = 0.048

Table S893. Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RASA1 MUTATED	10	1	5
RASA1 WILD-TYPE	68	85	80

Figure S511. Get High-res Image Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RASA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0241 (Fisher's exact test), Q value = 0.087

Table S894. Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RASA1 MUTATED	2	4	8	2
RASA1 WILD-TYPE	31	74	43	85

Figure S512. Get High-res Image Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RASA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.006

Table S895. Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RASA1 MUTATED	7	0	7	2	0
RASA1 WILD-TYPE	58	59	35	32	57

Figure S513. Get High-res Image Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RASA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.055

Table S896. Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RASA1 MUTATED	1	1	0	7	4	0	3
RASA1 WILD-TYPE	35	20	48	49	35	37	17

Figure S514. Get High-res Image Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00039 (Fisher's exact test), Q value = 0.0071

Table S897. Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RASA1 MUTATED	15	2	0
RASA1 WILD-TYPE	111	94	67

Figure S515. Get High-res Image Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0418 (Fisher's exact test), Q value = 0.12

Table S898. Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RASA1 MUTATED	8	5	1	3
RASA1 WILD-TYPE	48	100	59	65

Figure S516. Get High-res Image Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.72

Table S899. Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RASA1 MUTATED	1	1	5	3	0	1
RASA1 WILD-TYPE	33	17	54	35	19	42

'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.54

Table S900. Gene #90: 'RASA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RASA1 MUTATED	7	1	3
RASA1 WILD-TYPE	115	50	35

'ZNF48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.36

Table S901. Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF48 MUTATED	1	8	1	0	0
ZNF48 WILD-TYPE	78	118	26	43	12

'ZNF48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.061

Table S902. Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF48 MUTATED	1	3	4	0
ZNF48 WILD-TYPE	70	73	30	63

Figure S517. Get High-res Image Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.4

Table S903. Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZNF48 MUTATED	4	1	4
ZNF48 WILD-TYPE	74	85	81

'ZNF48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.27

Table S904. Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZNF48 MUTATED	2	1	4	2
ZNF48 WILD-TYPE	31	77	47	85

'ZNF48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00196 (Fisher's exact test), Q value = 0.02

Table S905. Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF48 MUTATED	7	0	1	0	0
ZNF48 WILD-TYPE	58	59	41	34	57

Figure S518. Get High-res Image Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.12

Table S906. Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF48 MUTATED	1	0	0	3	1	0	3
ZNF48 WILD-TYPE	35	21	48	53	38	37	17

Figure S519. Get High-res Image Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.18

Table S907. Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF48 MUTATED	8	1	1
ZNF48 WILD-TYPE	118	95	66

'ZNF48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0544 (Fisher's exact test), Q value = 0.14

Table S908. Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF48 MUTATED	5	3	2	0
ZNF48 WILD-TYPE	51	102	58	68

'ZNF48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.74

Table S909. Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZNF48 MUTATED	1	1	3	0	0	1
ZNF48 WILD-TYPE	33	17	56	38	19	42

'ZNF48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.71

Table S910. Gene #91: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZNF48 MUTATED	3	1	2
ZNF48 WILD-TYPE	119	50	36

'ADAM30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.76

Table S911. Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ADAM30 MUTATED	2	9	1	2	0
ADAM30 WILD-TYPE	77	117	26	41	12

'ADAM30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.68

Table S912. Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ADAM30 MUTATED	2	4	2	1
ADAM30 WILD-TYPE	69	72	32	62

'ADAM30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.45

Table S913. Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ADAM30 MUTATED	7	3	4
ADAM30 WILD-TYPE	71	83	81

'ADAM30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0854 (Fisher's exact test), Q value = 0.19

Table S914. Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ADAM30 MUTATED	3	2	6	3
ADAM30 WILD-TYPE	30	76	45	84

'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 0.97

Table S915. Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ADAM30 MUTATED	4	2	2	2	2
ADAM30 WILD-TYPE	61	57	40	32	55

'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S916. Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ADAM30 MUTATED	3	1	0	2	3	1	2
ADAM30 WILD-TYPE	33	20	48	54	36	36	18

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.082

Table S917. Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ADAM30 MUTATED	11	1	2
ADAM30 WILD-TYPE	115	95	65

Figure S520. Get High-res Image Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.052

Table S918. Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ADAM30 MUTATED	7	3	0	4
ADAM30 WILD-TYPE	49	102	60	64

Figure S521. Get High-res Image Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.63

Table S919. Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ADAM30 MUTATED	2	0	2	2	1	0
ADAM30 WILD-TYPE	32	18	57	36	18	43

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S920. Gene #92: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ADAM30 MUTATED	5	0	2
ADAM30 WILD-TYPE	117	51	36

'SETDB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.41

Table S921. Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SETDB2 MUTATED	1	7	0	1	1
SETDB2 WILD-TYPE	78	119	27	42	11

'SETDB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 0.15

Table S922. Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SETDB2 MUTATED	0	4	1	0
SETDB2 WILD-TYPE	71	72	33	63

'SETDB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.078

Table S923. Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SETDB2 MUTATED	6	0	4
SETDB2 WILD-TYPE	72	86	81

Figure S522. Get High-res Image Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SETDB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.29

Table S924. Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SETDB2 MUTATED	2	3	4	1
SETDB2 WILD-TYPE	31	75	47	86

'SETDB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.011

Table S925. Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SETDB2 MUTATED	8	0	0	0	1
SETDB2 WILD-TYPE	57	59	42	34	56

Figure S523. Get High-res Image Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SETDB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.22

Table S926. Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SETDB2 MUTATED	2	0	0	2	1	1	3
SETDB2 WILD-TYPE	34	21	48	54	38	36	17

'SETDB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.053

Table S927. Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SETDB2 MUTATED	9	1	0
SETDB2 WILD-TYPE	117	95	67

Figure S524. Get High-res Image Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SETDB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0031

Table S928. Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SETDB2 MUTATED	8	2	0	0
SETDB2 WILD-TYPE	48	103	60	68

Figure S525. Get High-res Image Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SETDB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.77

Table S929. Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SETDB2 MUTATED	1	0	2	2	0	0
SETDB2 WILD-TYPE	33	18	57	36	19	43

'SETDB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.41

Table S930. Gene #93: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SETDB2 MUTATED	3	0	2
SETDB2 WILD-TYPE	119	51	36

'INPPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0021 (Fisher's exact test), Q value = 0.021

Table S931. Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
INPPL1 MUTATED	0	16	1	3	2
INPPL1 WILD-TYPE	79	110	26	40	10

Figure S526. Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INPPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00369 (Fisher's exact test), Q value = 0.029

Table S932. Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
INPPL1 MUTATED	0	8	3	1
INPPL1 WILD-TYPE	71	68	31	62

Figure S527. Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'INPPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.046 (Fisher's exact test), Q value = 0.13

Table S933. Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
INPPL1 MUTATED	11	3	6
INPPL1 WILD-TYPE	67	83	79

Figure S528. Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'INPPL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00857 (Fisher's exact test), Q value = 0.048

Table S934. Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
INPPL1 MUTATED	3	4	10	3
INPPL1 WILD-TYPE	30	74	41	84

Figure S529. Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00241 (Fisher's exact test), Q value = 0.022

Table S935. Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
INPPL1 MUTATED	13	2	2	3	1
INPPL1 WILD-TYPE	52	57	40	31	56

Figure S530. Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'INPPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.0069

Table S936. Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
INPPL1 MUTATED	5	1	1	5	2	0	7
INPPL1 WILD-TYPE	31	20	47	51	37	37	13

Figure S531. Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S937. Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
INPPL1 MUTATED	20	2	0
INPPL1 WILD-TYPE	106	94	67

Figure S532. Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0032

Table S938. Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
INPPL1 MUTATED	13	7	1	1
INPPL1 WILD-TYPE	43	98	59	67

Figure S533. Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S939. Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
INPPL1 MUTATED	1	1	4	5	0	0
INPPL1 WILD-TYPE	33	17	55	33	19	43

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 0.12

Table S940. Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
INPPL1 MUTATED	7	0	4
INPPL1 WILD-TYPE	115	51	34

Figure S534. Get High-res Image Gene #94: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S941. Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTNND1 MUTATED	0	17	0	0	2
CTNND1 WILD-TYPE	79	109	27	43	10

Figure S535. Get High-res Image Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTNND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0039

Table S942. Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTNND1 MUTATED	0	12	3	1
CTNND1 WILD-TYPE	71	64	31	62

Figure S536. Get High-res Image Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTNND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.25

Table S943. Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CTNND1 MUTATED	9	3	6
CTNND1 WILD-TYPE	69	83	79

'CTNND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.32

Table S944. Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CTNND1 MUTATED	4	3	6	5
CTNND1 WILD-TYPE	29	75	45	82

'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00185 (Fisher's exact test), Q value = 0.019

Table S945. Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CTNND1 MUTATED	10	2	1	4	0
CTNND1 WILD-TYPE	55	57	41	30	57

Figure S537. Get High-res Image Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0351 (Fisher's exact test), Q value = 0.11

Table S946. Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CTNND1 MUTATED	2	1	2	3	4	0	5
CTNND1 WILD-TYPE	34	20	46	53	35	37	15

Figure S538. Get High-res Image Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.087

Table S947. Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CTNND1 MUTATED	14	4	1
CTNND1 WILD-TYPE	112	92	66

Figure S539. Get High-res Image Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00059 (Fisher's exact test), Q value = 0.0093

Table S948. Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CTNND1 MUTATED	9	9	1	0
CTNND1 WILD-TYPE	47	96	59	68

Figure S540. Get High-res Image Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.34

Table S949. Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CTNND1 MUTATED	1	2	7	4	0	1
CTNND1 WILD-TYPE	33	16	52	34	19	42

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.29

Table S950. Gene #95: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CTNND1 MUTATED	12	1	2
CTNND1 WILD-TYPE	110	50	36

'TFE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.31

Table S951. Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TFE3 MUTATED	0	7	0	1	0
TFE3 WILD-TYPE	79	119	27	42	12

'TFE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.064

Table S952. Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TFE3 MUTATED	0	5	2	0
TFE3 WILD-TYPE	71	71	32	63

Figure S541. Get High-res Image Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TFE3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.12

Table S953. Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TFE3 MUTATED	4	1	0
TFE3 WILD-TYPE	74	85	85

Figure S542. Get High-res Image Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TFE3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.082 (Fisher's exact test), Q value = 0.18

Table S954. Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TFE3 MUTATED	1	0	3	1
TFE3 WILD-TYPE	32	78	48	86

'TFE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.16

Table S955. Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TFE3 MUTATED	5	0	0	1	1
TFE3 WILD-TYPE	60	59	42	33	56

'TFE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.094

Table S956. Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TFE3 MUTATED	0	0	0	1	2	1	3
TFE3 WILD-TYPE	36	21	48	55	37	36	17

Figure S543. Get High-res Image Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.092

Table S957. Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TFE3 MUTATED	7	0	1
TFE3 WILD-TYPE	119	96	66

Figure S544. Get High-res Image Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.12

Table S958. Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TFE3 MUTATED	4	4	0	0
TFE3 WILD-TYPE	52	101	60	68

Figure S545. Get High-res Image Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.61

Table S959. Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TFE3 MUTATED	2	1	2	2	0	0
TFE3 WILD-TYPE	32	17	57	36	19	43

'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S960. Gene #96: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TFE3 MUTATED	4	0	3
TFE3 WILD-TYPE	118	51	35

'SERPINI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S961. Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SERPINI1 MUTATED	0	6	0	2	0
SERPINI1 WILD-TYPE	79	120	27	41	12

'SERPINI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.15

Table S962. Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SERPINI1 MUTATED	0	4	1	0
SERPINI1 WILD-TYPE	71	72	33	63

'SERPINI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.11

Table S963. Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SERPINI1 MUTATED	6	1	1
SERPINI1 WILD-TYPE	72	85	84

Figure S546. Get High-res Image Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SERPINI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00104 (Fisher's exact test), Q value = 0.013

Table S964. Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SERPINI1 MUTATED	1	1	6	0
SERPINI1 WILD-TYPE	32	77	45	87

Figure S547. Get High-res Image Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SERPINI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.077

Table S965. Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SERPINI1 MUTATED	4	0	3	0	0
SERPINI1 WILD-TYPE	61	59	39	34	57

Figure S548. Get High-res Image Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SERPINI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0913 (Fisher's exact test), Q value = 0.19

Table S966. Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SERPINI1 MUTATED	1	1	0	3	0	0	2
SERPINI1 WILD-TYPE	35	20	48	53	39	37	18

'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.092

Table S967. Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SERPINI1 MUTATED	7	0	1
SERPINI1 WILD-TYPE	119	96	66

Figure S549. Get High-res Image Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.23

Table S968. Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SERPINI1 MUTATED	4	3	0	1
SERPINI1 WILD-TYPE	52	102	60	67

'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.44

Table S969. Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SERPINI1 MUTATED	0	1	1	2	0	0
SERPINI1 WILD-TYPE	34	17	58	36	19	43

'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.12

Table S970. Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SERPINI1 MUTATED	1	0	3
SERPINI1 WILD-TYPE	121	51	35

Figure S550. Get High-res Image Gene #97: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SOX7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.057

Table S971. Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SOX7 MUTATED	0	10	2	1	2
SOX7 WILD-TYPE	79	116	25	42	10

Figure S551. Get High-res Image Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SOX7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.06

Table S972. Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SOX7 MUTATED	0	8	1	2
SOX7 WILD-TYPE	71	68	33	61

Figure S552. Get High-res Image Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SOX7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.39

Table S973. Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SOX7 MUTATED	6	2	4
SOX7 WILD-TYPE	72	84	81

'SOX7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00296 (Fisher's exact test), Q value = 0.026

Table S974. Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SOX7 MUTATED	5	4	3	0
SOX7 WILD-TYPE	28	74	48	87

Figure S553. Get High-res Image Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SOX7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.078

Table S975. Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SOX7 MUTATED	6	1	3	4	0
SOX7 WILD-TYPE	59	58	39	30	57

Figure S554. Get High-res Image Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SOX7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.27

Table S976. Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SOX7 MUTATED	4	0	1	5	2	0	2
SOX7 WILD-TYPE	32	21	47	51	37	37	18

'SOX7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S977. Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SOX7 MUTATED	15	0	0
SOX7 WILD-TYPE	111	96	67

Figure S555. Get High-res Image Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SOX7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00139 (Fisher's exact test), Q value = 0.016

Table S978. Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SOX7 MUTATED	6	9	0	0
SOX7 WILD-TYPE	50	96	60	68

Figure S556. Get High-res Image Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SOX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.065

Table S979. Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SOX7 MUTATED	1	4	4	1	0	0
SOX7 WILD-TYPE	33	14	55	37	19	43

Figure S557. Get High-res Image Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SOX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.3

Table S980. Gene #98: 'SOX7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SOX7 MUTATED	5	1	4
SOX7 WILD-TYPE	117	50	34

'LEMD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.5

Table S981. Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LEMD1 MUTATED	0	2	1	0	0
LEMD1 WILD-TYPE	79	124	26	43	12

'LEMD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.11

Table S982. Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LEMD1 MUTATED	0	4	0	0
LEMD1 WILD-TYPE	71	72	34	63

Figure S558. Get High-res Image Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LEMD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.096

Table S983. Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LEMD1 MUTATED	3	0	0
LEMD1 WILD-TYPE	75	86	85

Figure S559. Get High-res Image Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LEMD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.053

Table S984. Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LEMD1 MUTATED	0	0	3	0
LEMD1 WILD-TYPE	33	78	48	87

Figure S560. Get High-res Image Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0995 (Fisher's exact test), Q value = 0.21

Table S985. Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LEMD1 MUTATED	3	0	0	0	0
LEMD1 WILD-TYPE	62	59	42	34	57

'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.58

Table S986. Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LEMD1 MUTATED	0	0	0	1	2	0	0
LEMD1 WILD-TYPE	36	21	48	55	37	37	20

'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S987. Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LEMD1 MUTATED	4	0	0
LEMD1 WILD-TYPE	122	96	67

'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00125 (Fisher's exact test), Q value = 0.015

Table S988. Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LEMD1 MUTATED	4	0	0	0
LEMD1 WILD-TYPE	52	105	60	68

Figure S561. Get High-res Image Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LEMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.55

Table S989. Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LEMD1 MUTATED	1	1	2	0	0	0
LEMD1 WILD-TYPE	33	17	57	38	19	43

'LEMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0423 (Fisher's exact test), Q value = 0.12

Table S990. Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LEMD1 MUTATED	1	0	3
LEMD1 WILD-TYPE	121	51	35

Figure S562. Get High-res Image Gene #99: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARID1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.017

Table S991. Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARID1B MUTATED	1	21	1	2	1
ARID1B WILD-TYPE	78	105	26	41	11

Figure S563. Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00836 (Fisher's exact test), Q value = 0.047

Table S992. Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARID1B MUTATED	1	11	3	2
ARID1B WILD-TYPE	70	65	31	61

Figure S564. Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.093

Table S993. Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ARID1B MUTATED	14	5	6
ARID1B WILD-TYPE	64	81	79

Figure S565. Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ARID1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0327 (Fisher's exact test), Q value = 0.1

Table S994. Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ARID1B MUTATED	5	5	10	5
ARID1B WILD-TYPE	28	73	41	82

Figure S566. Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARID1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00434 (Fisher's exact test), Q value = 0.031

Table S995. Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ARID1B MUTATED	14	4	3	2	1
ARID1B WILD-TYPE	51	55	39	32	56

Figure S567. Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARID1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00438 (Fisher's exact test), Q value = 0.031

Table S996. Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ARID1B MUTATED	7	2	1	4	3	1	6
ARID1B WILD-TYPE	29	19	47	52	36	36	14

Figure S568. Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARID1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.072

Table S997. Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ARID1B MUTATED	19	5	3
ARID1B WILD-TYPE	107	91	64

Figure S569. Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARID1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.01

Table S998. Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ARID1B MUTATED	11	13	2	1
ARID1B WILD-TYPE	45	92	58	67

Figure S570. Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARID1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S999. Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ARID1B MUTATED	2	2	6	4	0	0
ARID1B WILD-TYPE	32	16	53	34	19	43

'ARID1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.11

Table S1000. Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ARID1B MUTATED	7	1	6
ARID1B WILD-TYPE	115	50	32

Figure S571. Get High-res Image Gene #100: 'ARID1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0058

Table S1001. Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PGM5 MUTATED	0	18	3	1	2
PGM5 WILD-TYPE	79	108	24	42	10

Figure S572. Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PGM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1002. Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PGM5 MUTATED	0	16	4	1
PGM5 WILD-TYPE	71	60	30	62

Figure S573. Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PGM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.11

Table S1003. Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PGM5 MUTATED	11	3	5
PGM5 WILD-TYPE	67	83	80

Figure S574. Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PGM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.01

Table S1004. Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PGM5 MUTATED	3	3	11	2
PGM5 WILD-TYPE	30	75	40	85

Figure S575. Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1005. Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PGM5 MUTATED	16	1	4	2	0
PGM5 WILD-TYPE	49	58	38	32	57

Figure S576. Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PGM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1006. Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PGM5 MUTATED	0	0	2	8	5	0	8
PGM5 WILD-TYPE	36	21	46	48	34	37	12

Figure S577. Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.0087

Table S1007. Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PGM5 MUTATED	20	2	3
PGM5 WILD-TYPE	106	94	64

Figure S578. Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1008. Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PGM5 MUTATED	17	6	1	1
PGM5 WILD-TYPE	39	99	59	67

Figure S579. Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.0074

Table S1009. Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PGM5 MUTATED	5	5	1	7	0	1
PGM5 WILD-TYPE	29	13	58	31	19	42

Figure S580. Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0057

Table S1010. Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PGM5 MUTATED	8	1	10
PGM5 WILD-TYPE	114	50	28

Figure S581. Get High-res Image Gene #101: 'PGM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.12

Table S1011. Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FHOD3 MUTATED	3	18	1	2	2
FHOD3 WILD-TYPE	76	108	26	41	10

Figure S582. Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FHOD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0032

Table S1012. Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FHOD3 MUTATED	1	13	3	0
FHOD3 WILD-TYPE	70	63	31	63

Figure S583. Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FHOD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00844 (Fisher's exact test), Q value = 0.047

Table S1013. Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FHOD3 MUTATED	13	3	5
FHOD3 WILD-TYPE	65	83	80

Figure S584. Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FHOD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.35

Table S1014. Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FHOD3 MUTATED	2	4	8	7
FHOD3 WILD-TYPE	31	74	43	80

'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.47

Table S1015. Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FHOD3 MUTATED	8	3	4	5	3
FHOD3 WILD-TYPE	57	56	38	29	54

'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0806 (Fisher's exact test), Q value = 0.18

Table S1016. Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FHOD3 MUTATED	3	1	1	7	7	1	3
FHOD3 WILD-TYPE	33	20	47	49	32	36	17

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00221 (Fisher's exact test), Q value = 0.021

Table S1017. Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FHOD3 MUTATED	20	4	2
FHOD3 WILD-TYPE	106	92	65

Figure S585. Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0041

Table S1018. Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FHOD3 MUTATED	14	8	1	3
FHOD3 WILD-TYPE	42	97	59	65

Figure S586. Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 0.2

Table S1019. Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FHOD3 MUTATED	1	2	6	5	1	0
FHOD3 WILD-TYPE	33	16	53	33	18	43

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.081

Table S1020. Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FHOD3 MUTATED	10	0	5
FHOD3 WILD-TYPE	112	51	33

Figure S587. Get High-res Image Gene #102: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CABP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.51

Table S1021. Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CABP5 MUTATED	0	2	1	1	0
CABP5 WILD-TYPE	79	124	26	42	12

'CABP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 0.2

Table S1022. Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CABP5 MUTATED	0	3	1	0
CABP5 WILD-TYPE	71	73	33	63

'CABP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 0.18

Table S1023. Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CABP5 MUTATED	3	0	1
CABP5 WILD-TYPE	75	86	84

'CABP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00184 (Fisher's exact test), Q value = 0.019

Table S1024. Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CABP5 MUTATED	0	0	4	0
CABP5 WILD-TYPE	33	78	47	87

Figure S588. Get High-res Image Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CABP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.092

Table S1025. Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CABP5 MUTATED	4	0	0	0	0
CABP5 WILD-TYPE	61	59	42	34	57

Figure S589. Get High-res Image Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CABP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0851 (Fisher's exact test), Q value = 0.19

Table S1026. Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CABP5 MUTATED	0	0	0	1	1	0	2
CABP5 WILD-TYPE	36	21	48	55	38	37	18

'CABP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.43

Table S1027. Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CABP5 MUTATED	4	1	0
CABP5 WILD-TYPE	122	95	67

'CABP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00253 (Fisher's exact test), Q value = 0.023

Table S1028. Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CABP5 MUTATED	4	0	1	0
CABP5 WILD-TYPE	52	105	59	68

Figure S590. Get High-res Image Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CABP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1029. Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CABP5 MUTATED	1	0	1	1	0	1
CABP5 WILD-TYPE	33	18	58	37	19	42

'CABP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.24

Table S1030. Gene #103: 'CABP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CABP5 MUTATED	1	1	2
CABP5 WILD-TYPE	121	50	36

'TTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.7

Table S1031. Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TTF1 MUTATED	3	8	0	2	1
TTF1 WILD-TYPE	76	118	27	41	11

'TTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.11

Table S1032. Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TTF1 MUTATED	1	6	2	0
TTF1 WILD-TYPE	70	70	32	63

Figure S591. Get High-res Image Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TTF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00481 (Fisher's exact test), Q value = 0.033

Table S1033. Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TTF1 MUTATED	9	1	2
TTF1 WILD-TYPE	69	85	83

Figure S592. Get High-res Image Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TTF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.061

Table S1034. Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TTF1 MUTATED	3	2	6	1
TTF1 WILD-TYPE	30	76	45	86

Figure S593. Get High-res Image Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.06

Table S1035. Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TTF1 MUTATED	8	1	0	0	3
TTF1 WILD-TYPE	57	58	42	34	54

Figure S594. Get High-res Image Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.68

Table S1036. Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TTF1 MUTATED	2	1	0	3	3	2	1
TTF1 WILD-TYPE	34	20	48	53	36	35	19

'TTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00391 (Fisher's exact test), Q value = 0.03

Table S1037. Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TTF1 MUTATED	11	0	3
TTF1 WILD-TYPE	115	96	64

Figure S595. Get High-res Image Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00363 (Fisher's exact test), Q value = 0.029

Table S1038. Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TTF1 MUTATED	8	3	0	3
TTF1 WILD-TYPE	48	102	60	65

Figure S596. Get High-res Image Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.26

Table S1039. Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TTF1 MUTATED	4	0	2	2	0	0
TTF1 WILD-TYPE	30	18	57	36	19	43

'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.087

Table S1040. Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TTF1 MUTATED	4	0	4
TTF1 WILD-TYPE	118	51	34

Figure S597. Get High-res Image Gene #104: 'TTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHACTR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 0.85

Table S1041. Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PHACTR4 MUTATED	1	5	1	1	0
PHACTR4 WILD-TYPE	78	121	26	42	12

'PHACTR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00305 (Fisher's exact test), Q value = 0.026

Table S1042. Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PHACTR4 MUTATED	0	7	1	0
PHACTR4 WILD-TYPE	71	69	33	63

Figure S598. Get High-res Image Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHACTR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00267 (Fisher's exact test), Q value = 0.024

Table S1043. Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PHACTR4 MUTATED	5	0	0
PHACTR4 WILD-TYPE	73	86	85

Figure S599. Get High-res Image Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PHACTR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00372 (Fisher's exact test), Q value = 0.029

Table S1044. Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PHACTR4 MUTATED	1	0	4	0
PHACTR4 WILD-TYPE	32	78	47	87

Figure S600. Get High-res Image Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHACTR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0434 (Fisher's exact test), Q value = 0.12

Table S1045. Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PHACTR4 MUTATED	4	0	0	1	0
PHACTR4 WILD-TYPE	61	59	42	33	57

Figure S601. Get High-res Image Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PHACTR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.54

Table S1046. Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PHACTR4 MUTATED	1	0	0	1	2	0	1
PHACTR4 WILD-TYPE	35	21	48	55	37	37	19

'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.15

Table S1047. Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PHACTR4 MUTATED	7	1	0
PHACTR4 WILD-TYPE	119	95	67

'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00217 (Fisher's exact test), Q value = 0.021

Table S1048. Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PHACTR4 MUTATED	6	1	1	0
PHACTR4 WILD-TYPE	50	104	59	68

Figure S602. Get High-res Image Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.49

Table S1049. Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PHACTR4 MUTATED	0	0	5	2	0	1
PHACTR4 WILD-TYPE	34	18	54	36	19	42

'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S1050. Gene #105: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PHACTR4 MUTATED	4	1	3
PHACTR4 WILD-TYPE	118	50	35

'RBM43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 0.9

Table S1051. Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RBM43 MUTATED	2	6	0	1	0
RBM43 WILD-TYPE	77	120	27	42	12

'RBM43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.66

Table S1052. Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RBM43 MUTATED	2	1	2	2
RBM43 WILD-TYPE	69	75	32	61

'RBM43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.21

Table S1053. Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RBM43 MUTATED	6	2	1
RBM43 WILD-TYPE	72	84	84

'RBM43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S1054. Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RBM43 MUTATED	3	1	3	2
RBM43 WILD-TYPE	30	77	48	85

'RBM43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.4

Table S1055. Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RBM43 MUTATED	4	1	0	0	3
RBM43 WILD-TYPE	61	58	42	34	54

'RBM43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00557 (Fisher's exact test), Q value = 0.036

Table S1056. Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RBM43 MUTATED	5	0	0	0	1	2	0
RBM43 WILD-TYPE	31	21	48	56	38	35	20

Figure S603. Get High-res Image Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RBM43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.11

Table S1057. Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RBM43 MUTATED	7	0	2
RBM43 WILD-TYPE	119	96	65

Figure S604. Get High-res Image Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RBM43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.53

Table S1058. Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RBM43 MUTATED	2	5	0	2
RBM43 WILD-TYPE	54	100	60	66

'RBM43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.73

Table S1059. Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RBM43 MUTATED	1	0	3	1	1	0
RBM43 WILD-TYPE	33	18	56	37	18	43

'RBM43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.55

Table S1060. Gene #106: 'RBM43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RBM43 MUTATED	5	0	1
RBM43 WILD-TYPE	117	51	37

'CDC25C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.16

Table S1061. Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDC25C MUTATED	0	10	1	2	0
CDC25C WILD-TYPE	79	116	26	41	12

'CDC25C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0753 (Fisher's exact test), Q value = 0.17

Table S1062. Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDC25C MUTATED	1	7	2	1
CDC25C WILD-TYPE	70	69	32	62

'CDC25C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.063

Table S1063. Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CDC25C MUTATED	8	1	2
CDC25C WILD-TYPE	70	85	83

Figure S605. Get High-res Image Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDC25C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.091

Table S1064. Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CDC25C MUTATED	2	1	6	2
CDC25C WILD-TYPE	31	77	45	85

Figure S606. Get High-res Image Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDC25C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.2

Table S1065. Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CDC25C MUTATED	5	1	0	3	1
CDC25C WILD-TYPE	60	58	42	31	56

'CDC25C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00621 (Fisher's exact test), Q value = 0.039

Table S1066. Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CDC25C MUTATED	1	0	0	4	1	0	4
CDC25C WILD-TYPE	35	21	48	52	38	37	16

Figure S607. Get High-res Image Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDC25C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.15

Table S1067. Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CDC25C MUTATED	9	4	0
CDC25C WILD-TYPE	117	92	67

'CDC25C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S1068. Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CDC25C MUTATED	6	4	2	1
CDC25C WILD-TYPE	50	101	58	67

'CDC25C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.92

Table S1069. Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CDC25C MUTATED	1	1	2	2	0	3
CDC25C WILD-TYPE	33	17	57	36	19	40

'CDC25C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.56

Table S1070. Gene #107: 'CDC25C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CDC25C MUTATED	5	1	3
CDC25C WILD-TYPE	117	50	35

'GPR161 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.4

Table S1071. Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPR161 MUTATED	2	8	1	0	1
GPR161 WILD-TYPE	77	118	26	43	11

'GPR161 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.73

Table S1072. Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPR161 MUTATED	1	4	1	2
GPR161 WILD-TYPE	70	72	33	61

'GPR161 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S1073. Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GPR161 MUTATED	5	1	3
GPR161 WILD-TYPE	73	85	82

'GPR161 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.62

Table S1074. Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GPR161 MUTATED	2	2	3	2
GPR161 WILD-TYPE	31	76	48	85

'GPR161 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.058

Table S1075. Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GPR161 MUTATED	5	0	4	1	0
GPR161 WILD-TYPE	60	59	38	33	57

Figure S608. Get High-res Image Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPR161 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.064

Table S1076. Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GPR161 MUTATED	3	0	0	6	0	0	1
GPR161 WILD-TYPE	33	21	48	50	39	37	19

Figure S609. Get High-res Image Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR161 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.07

Table S1077. Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GPR161 MUTATED	10	2	0
GPR161 WILD-TYPE	116	94	67

Figure S610. Get High-res Image Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR161 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0672 (Fisher's exact test), Q value = 0.16

Table S1078. Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GPR161 MUTATED	5	5	2	0
GPR161 WILD-TYPE	51	100	58	68

'GPR161 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.21

Table S1079. Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GPR161 MUTATED	0	2	3	3	0	0
GPR161 WILD-TYPE	34	16	56	35	19	43

'GPR161 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.77

Table S1080. Gene #108: 'GPR161 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GPR161 MUTATED	5	1	2
GPR161 WILD-TYPE	117	50	36

'SVIL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00164 (Fisher's exact test), Q value = 0.018

Table S1081. Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SVIL MUTATED	1	21	2	2	0
SVIL WILD-TYPE	78	105	25	41	12

Figure S611. Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SVIL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0038

Table S1082. Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SVIL MUTATED	1	16	1	3
SVIL WILD-TYPE	70	60	33	60

Figure S612. Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SVIL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.33

Table S1083. Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SVIL MUTATED	9	4	9
SVIL WILD-TYPE	69	82	76

'SVIL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.22

Table S1084. Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SVIL MUTATED	1	6	9	6
SVIL WILD-TYPE	32	72	42	81

'SVIL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.011

Table S1085. Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SVIL MUTATED	14	4	4	3	0
SVIL WILD-TYPE	51	55	38	31	57

Figure S613. Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SVIL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00336 (Fisher's exact test), Q value = 0.027

Table S1086. Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SVIL MUTATED	5	0	2	7	5	0	6
SVIL WILD-TYPE	31	21	46	49	34	37	14

Figure S614. Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00871 (Fisher's exact test), Q value = 0.048

Table S1087. Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SVIL MUTATED	19	4	3
SVIL WILD-TYPE	107	92	64

Figure S615. Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SVIL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00416 (Fisher's exact test), Q value = 0.03

Table S1088. Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SVIL MUTATED	12	9	3	2
SVIL WILD-TYPE	44	96	57	66

Figure S616. Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.37

Table S1089. Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SVIL MUTATED	2	3	8	5	0	2
SVIL WILD-TYPE	32	15	51	33	19	41

'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.11

Table S1090. Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SVIL MUTATED	9	3	8
SVIL WILD-TYPE	113	48	30

Figure S617. Get High-res Image Gene #109: 'SVIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PMEPA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S1091. Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PMEPA1 MUTATED	0	6	0	0	0
PMEPA1 WILD-TYPE	79	120	27	43	12

'PMEPA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.53

Table S1092. Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PMEPA1 MUTATED	0	1	1	2
PMEPA1 WILD-TYPE	71	75	33	61

'PMEPA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00946 (Fisher's exact test), Q value = 0.05

Table S1093. Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PMEPA1 MUTATED	5	0	1
PMEPA1 WILD-TYPE	73	86	84

Figure S618. Get High-res Image Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PMEPA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.39

Table S1094. Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PMEPA1 MUTATED	2	1	2	1
PMEPA1 WILD-TYPE	31	77	49	86

'PMEPA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.3

Table S1095. Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PMEPA1 MUTATED	3	1	0	2	0
PMEPA1 WILD-TYPE	62	58	42	32	57

'PMEPA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.28

Table S1096. Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PMEPA1 MUTATED	3	0	0	1	1	0	1
PMEPA1 WILD-TYPE	33	21	48	55	38	37	19

'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.078

Table S1097. Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PMEPA1 MUTATED	6	0	0
PMEPA1 WILD-TYPE	120	96	67

Figure S619. Get High-res Image Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S1098. Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PMEPA1 MUTATED	1	5	0	0
PMEPA1 WILD-TYPE	55	100	60	68

'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.58

Table S1099. Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PMEPA1 MUTATED	1	0	3	0	0	0
PMEPA1 WILD-TYPE	33	18	56	38	19	43

'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.71

Table S1100. Gene #110: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PMEPA1 MUTATED	3	0	1
PMEPA1 WILD-TYPE	119	51	37

'FILIP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S1101. Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FILIP1L MUTATED	1	12	1	3	0
FILIP1L WILD-TYPE	78	114	26	40	12

'FILIP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.088

Table S1102. Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FILIP1L MUTATED	3	8	3	0
FILIP1L WILD-TYPE	68	68	31	63

Figure S620. Get High-res Image Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FILIP1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S1103. Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FILIP1L MUTATED	13	0	3
FILIP1L WILD-TYPE	65	86	82

Figure S621. Get High-res Image Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FILIP1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1104. Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FILIP1L MUTATED	1	1	12	2
FILIP1L WILD-TYPE	32	77	39	85

Figure S622. Get High-res Image Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FILIP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.056

Table S1105. Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FILIP1L MUTATED	9	0	2	1	2
FILIP1L WILD-TYPE	56	59	40	33	55

Figure S623. Get High-res Image Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FILIP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-04 (Fisher's exact test), Q value = 0.011

Table S1106. Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FILIP1L MUTATED	2	0	0	4	1	1	6
FILIP1L WILD-TYPE	34	21	48	52	38	36	14

Figure S624. Get High-res Image Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FILIP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.089

Table S1107. Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FILIP1L MUTATED	13	2	2
FILIP1L WILD-TYPE	113	94	65

Figure S625. Get High-res Image Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FILIP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0742 (Fisher's exact test), Q value = 0.17

Table S1108. Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FILIP1L MUTATED	7	7	1	2
FILIP1L WILD-TYPE	49	98	59	66

'FILIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.64

Table S1109. Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FILIP1L MUTATED	3	1	5	4	0	1
FILIP1L WILD-TYPE	31	17	54	34	19	42

'FILIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.21

Table S1110. Gene #111: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FILIP1L MUTATED	8	1	5
FILIP1L WILD-TYPE	114	50	33

'CTSC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.073

Table S1111. Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTSC MUTATED	0	10	0	0	0
CTSC WILD-TYPE	79	116	27	43	12

Figure S626. Get High-res Image Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTSC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.08

Table S1112. Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTSC MUTATED	0	5	1	0
CTSC WILD-TYPE	71	71	33	63

Figure S627. Get High-res Image Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTSC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S1113. Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CTSC MUTATED	5	1	1
CTSC WILD-TYPE	73	85	84

'CTSC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.21

Table S1114. Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CTSC MUTATED	1	1	4	1
CTSC WILD-TYPE	32	77	47	86

'CTSC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.12

Table S1115. Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CTSC MUTATED	6	2	0	1	0
CTSC WILD-TYPE	59	57	42	33	57

Figure S628. Get High-res Image Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTSC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0029

Table S1116. Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CTSC MUTATED	3	0	0	1	0	0	5
CTSC WILD-TYPE	33	21	48	55	39	37	15

Figure S629. Get High-res Image Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTSC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.15

Table S1117. Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CTSC MUTATED	8	2	0
CTSC WILD-TYPE	118	94	67

'CTSC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.27

Table S1118. Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CTSC MUTATED	4	4	2	0
CTSC WILD-TYPE	52	101	58	68

'CTSC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.3

Table S1119. Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CTSC MUTATED	1	1	0	3	0	1
CTSC WILD-TYPE	33	17	59	35	19	42

'CTSC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S1120. Gene #112: 'CTSC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CTSC MUTATED	3	1	2
CTSC WILD-TYPE	119	50	36

'PAMR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.14

Table S1121. Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PAMR1 MUTATED	1	13	2	1	0
PAMR1 WILD-TYPE	78	113	25	42	12

'PAMR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.057

Table S1122. Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PAMR1 MUTATED	0	7	2	1
PAMR1 WILD-TYPE	71	69	32	62

Figure S630. Get High-res Image Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAMR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.011

Table S1123. Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PAMR1 MUTATED	10	0	7
PAMR1 WILD-TYPE	68	86	78

Figure S631. Get High-res Image Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PAMR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.006

Table S1124. Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PAMR1 MUTATED	3	5	9	0
PAMR1 WILD-TYPE	30	73	42	87

Figure S632. Get High-res Image Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.52

Table S1125. Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PAMR1 MUTATED	7	2	3	3	2
PAMR1 WILD-TYPE	58	57	39	31	55

'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.27

Table S1126. Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PAMR1 MUTATED	4	2	0	4	4	1	2
PAMR1 WILD-TYPE	32	19	48	52	35	36	18

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00445 (Fisher's exact test), Q value = 0.032

Table S1127. Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PAMR1 MUTATED	14	2	1
PAMR1 WILD-TYPE	112	94	66

Figure S633. Get High-res Image Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.057

Table S1128. Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PAMR1 MUTATED	8	7	1	1
PAMR1 WILD-TYPE	48	98	59	67

Figure S634. Get High-res Image Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.73

Table S1129. Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PAMR1 MUTATED	1	0	5	2	0	1
PAMR1 WILD-TYPE	33	18	54	36	19	42

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.56

Table S1130. Gene #113: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PAMR1 MUTATED	5	1	3
PAMR1 WILD-TYPE	117	50	35

'USP21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S1131. Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
USP21 MUTATED	1	9	1	0	1
USP21 WILD-TYPE	78	117	26	43	11

'USP21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.18

Table S1132. Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
USP21 MUTATED	1	5	2	0
USP21 WILD-TYPE	70	71	32	63

'USP21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S1133. Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
USP21 MUTATED	6	2	3
USP21 WILD-TYPE	72	84	82

'USP21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.088

Table S1134. Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
USP21 MUTATED	4	2	4	1
USP21 WILD-TYPE	29	76	47	86

Figure S635. Get High-res Image Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'USP21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.46

Table S1135. Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
USP21 MUTATED	6	1	1	1	2
USP21 WILD-TYPE	59	58	41	33	55

'USP21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.17

Table S1136. Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
USP21 MUTATED	2	0	0	3	4	0	2
USP21 WILD-TYPE	34	21	48	53	35	37	18

'USP21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.065

Table S1137. Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
USP21 MUTATED	11	1	1
USP21 WILD-TYPE	115	95	66

Figure S636. Get High-res Image Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'USP21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.0066

Table S1138. Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
USP21 MUTATED	9	1	1	2
USP21 WILD-TYPE	47	104	59	66

Figure S637. Get High-res Image Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'USP21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.56

Table S1139. Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
USP21 MUTATED	2	0	4	2	0	0
USP21 WILD-TYPE	32	18	55	36	19	43

'USP21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00636 (Fisher's exact test), Q value = 0.039

Table S1140. Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
USP21 MUTATED	3	0	5
USP21 WILD-TYPE	119	51	33

Figure S638. Get High-res Image Gene #114: 'USP21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PAX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.37

Table S1141. Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PAX2 MUTATED	0	6	1	1	0
PAX2 WILD-TYPE	79	120	26	42	12

'PAX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.13

Table S1142. Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PAX2 MUTATED	0	3	3	1
PAX2 WILD-TYPE	71	73	31	62

Figure S639. Get High-res Image Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.014

Table S1143. Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PAX2 MUTATED	7	0	1
PAX2 WILD-TYPE	71	86	84

Figure S640. Get High-res Image Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PAX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00365 (Fisher's exact test), Q value = 0.029

Table S1144. Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PAX2 MUTATED	2	1	5	0
PAX2 WILD-TYPE	31	77	46	87

Figure S641. Get High-res Image Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PAX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 0.16

Table S1145. Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PAX2 MUTATED	5	0	0	1	1
PAX2 WILD-TYPE	60	59	42	33	56

'PAX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.09

Table S1146. Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PAX2 MUTATED	2	0	0	1	1	0	3
PAX2 WILD-TYPE	34	21	48	55	38	37	17

Figure S642. Get High-res Image Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PAX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.15

Table S1147. Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PAX2 MUTATED	7	1	0
PAX2 WILD-TYPE	119	95	67

'PAX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S1148. Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PAX2 MUTATED	4	3	1	0
PAX2 WILD-TYPE	52	102	59	68

'PAX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.68

Table S1149. Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PAX2 MUTATED	0	0	4	1	0	1
PAX2 WILD-TYPE	34	18	55	37	19	42

'PAX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.63

Table S1150. Gene #115: 'PAX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PAX2 MUTATED	5	1	0
PAX2 WILD-TYPE	117	50	38

'ZFHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00183 (Fisher's exact test), Q value = 0.019

Table S1151. Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZFHX3 MUTATED	3	28	2	4	1
ZFHX3 WILD-TYPE	76	98	25	39	11

Figure S643. Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZFHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0027

Table S1152. Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZFHX3 MUTATED	3	21	4	3
ZFHX3 WILD-TYPE	68	55	30	60

Figure S644. Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFHX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S1153. Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZFHX3 MUTATED	22	4	7
ZFHX3 WILD-TYPE	56	82	78

Figure S645. Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZFHX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00118 (Fisher's exact test), Q value = 0.014

Table S1154. Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZFHX3 MUTATED	7	7	14	5
ZFHX3 WILD-TYPE	26	71	37	82

Figure S646. Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0041

Table S1155. Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZFHX3 MUTATED	17	3	4	7	1
ZFHX3 WILD-TYPE	48	56	38	27	56

Figure S647. Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1156. Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZFHX3 MUTATED	8	0	0	7	10	0	7
ZFHX3 WILD-TYPE	28	21	48	49	29	37	13

Figure S648. Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0024

Table S1157. Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZFHX3 MUTATED	30	5	3
ZFHX3 WILD-TYPE	96	91	64

Figure S649. Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1158. Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZFHX3 MUTATED	20	11	3	4
ZFHX3 WILD-TYPE	36	94	57	64

Figure S650. Get High-res Image Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S1159. Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZFHX3 MUTATED	3	4	9	9	3	2
ZFHX3 WILD-TYPE	31	14	50	29	16	41

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.15

Table S1160. Gene #116: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZFHX3 MUTATED	18	3	9
ZFHX3 WILD-TYPE	104	48	29

'EPHA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.087

Table S1161. Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPHA2 MUTATED	1	14	4	2	1
EPHA2 WILD-TYPE	78	112	23	41	11

Figure S651. Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPHA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.062

Table S1162. Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPHA2 MUTATED	3	13	2	2
EPHA2 WILD-TYPE	68	63	32	61

Figure S652. Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPHA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0703 (Fisher's exact test), Q value = 0.17

Table S1163. Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EPHA2 MUTATED	9	3	3
EPHA2 WILD-TYPE	69	83	82

'EPHA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0032 (Fisher's exact test), Q value = 0.026

Table S1164. Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EPHA2 MUTATED	3	3	8	1
EPHA2 WILD-TYPE	30	75	43	86

Figure S653. Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.016

Table S1165. Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EPHA2 MUTATED	10	0	4	6	2
EPHA2 WILD-TYPE	55	59	38	28	55

Figure S654. Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00058 (Fisher's exact test), Q value = 0.0092

Table S1166. Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EPHA2 MUTATED	2	0	1	7	6	0	6
EPHA2 WILD-TYPE	34	21	47	49	33	37	14

Figure S655. Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.0064

Table S1167. Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EPHA2 MUTATED	19	2	2
EPHA2 WILD-TYPE	107	94	65

Figure S656. Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0048

Table S1168. Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EPHA2 MUTATED	12	9	1	1
EPHA2 WILD-TYPE	44	96	59	67

Figure S657. Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00916 (Fisher's exact test), Q value = 0.049

Table S1169. Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EPHA2 MUTATED	3	6	4	4	0	1
EPHA2 WILD-TYPE	31	12	55	34	19	42

Figure S658. Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S1170. Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EPHA2 MUTATED	5	2	11
EPHA2 WILD-TYPE	117	49	27

Figure S659. Get High-res Image Gene #117: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PREPL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.11

Table S1171. Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PREPL MUTATED	1	15	1	4	1
PREPL WILD-TYPE	78	111	26	39	11

Figure S660. Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PREPL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00073 (Fisher's exact test), Q value = 0.011

Table S1172. Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PREPL MUTATED	1	12	4	1
PREPL WILD-TYPE	70	64	30	62

Figure S661. Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PREPL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.061

Table S1173. Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PREPL MUTATED	12	3	4
PREPL WILD-TYPE	66	83	81

Figure S662. Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PREPL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.0063

Table S1174. Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PREPL MUTATED	6	2	9	2
PREPL WILD-TYPE	27	76	42	85

Figure S663. Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PREPL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00366 (Fisher's exact test), Q value = 0.029

Table S1175. Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PREPL MUTATED	11	3	0	5	2
PREPL WILD-TYPE	54	56	42	29	55

Figure S664. Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PREPL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00393 (Fisher's exact test), Q value = 0.03

Table S1176. Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PREPL MUTATED	2	2	1	4	7	0	5
PREPL WILD-TYPE	34	19	47	52	32	37	15

Figure S665. Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PREPL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.01

Table S1177. Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PREPL MUTATED	18	3	1
PREPL WILD-TYPE	108	93	66

Figure S666. Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PREPL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.0088

Table S1178. Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PREPL MUTATED	12	6	3	1
PREPL WILD-TYPE	44	99	57	67

Figure S667. Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PREPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 0.75

Table S1179. Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PREPL MUTATED	3	2	6	3	1	1
PREPL WILD-TYPE	31	16	53	35	18	42

'PREPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00593 (Fisher's exact test), Q value = 0.038

Table S1180. Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PREPL MUTATED	6	2	8
PREPL WILD-TYPE	116	49	30

Figure S668. Get High-res Image Gene #118: 'PREPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RGL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S1181. Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RGL2 MUTATED	1	8	2	0	1
RGL2 WILD-TYPE	78	118	25	43	11

'RGL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0858 (Fisher's exact test), Q value = 0.19

Table S1182. Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RGL2 MUTATED	1	7	1	1
RGL2 WILD-TYPE	70	69	33	62

'RGL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.077

Table S1183. Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RGL2 MUTATED	6	0	4
RGL2 WILD-TYPE	72	86	81

Figure S669. Get High-res Image Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RGL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00299 (Fisher's exact test), Q value = 0.026

Table S1184. Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RGL2 MUTATED	0	2	7	1
RGL2 WILD-TYPE	33	76	44	86

Figure S670. Get High-res Image Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RGL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0022 (Fisher's exact test), Q value = 0.021

Table S1185. Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RGL2 MUTATED	8	0	0	1	1
RGL2 WILD-TYPE	57	59	42	33	56

Figure S671. Get High-res Image Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RGL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.25

Table S1186. Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RGL2 MUTATED	1	0	0	3	2	1	3
RGL2 WILD-TYPE	35	21	48	53	37	36	17

'RGL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S1187. Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RGL2 MUTATED	9	2	1
RGL2 WILD-TYPE	117	94	66

'RGL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.068

Table S1188. Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RGL2 MUTATED	7	3	1	1
RGL2 WILD-TYPE	49	102	59	67

Figure S672. Get High-res Image Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.33

Table S1189. Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RGL2 MUTATED	2	3	2	1	0	1
RGL2 WILD-TYPE	32	15	57	37	19	42

'RGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.22

Table S1190. Gene #119: 'RGL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RGL2 MUTATED	4	1	4
RGL2 WILD-TYPE	118	50	34

'ATP6V1C2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.15

Table S1191. Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATP6V1C2 MUTATED	0	9	1	1	1
ATP6V1C2 WILD-TYPE	79	117	26	42	11

'ATP6V1C2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.098

Table S1192. Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATP6V1C2 MUTATED	0	7	2	2
ATP6V1C2 WILD-TYPE	71	69	32	61

Figure S673. Get High-res Image Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.2

Table S1193. Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ATP6V1C2 MUTATED	6	1	2
ATP6V1C2 WILD-TYPE	72	85	83

'ATP6V1C2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.27

Table S1194. Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ATP6V1C2 MUTATED	2	1	4	2
ATP6V1C2 WILD-TYPE	31	77	47	85

'ATP6V1C2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.065

Table S1195. Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ATP6V1C2 MUTATED	6	0	2	2	0
ATP6V1C2 WILD-TYPE	59	59	40	32	57

Figure S674. Get High-res Image Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.43

Table S1196. Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ATP6V1C2 MUTATED	3	0	1	3	1	0	2
ATP6V1C2 WILD-TYPE	33	21	47	53	38	37	18

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00212 (Fisher's exact test), Q value = 0.021

Table S1197. Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ATP6V1C2 MUTATED	11	1	0
ATP6V1C2 WILD-TYPE	115	95	67

Figure S675. Get High-res Image Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.069

Table S1198. Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ATP6V1C2 MUTATED	6	5	1	0
ATP6V1C2 WILD-TYPE	50	100	59	68

Figure S676. Get High-res Image Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S1199. Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ATP6V1C2 MUTATED	0	2	6	1	0	1
ATP6V1C2 WILD-TYPE	34	16	53	37	19	42

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 0.69

Table S1200. Gene #120: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ATP6V1C2 MUTATED	5	2	3
ATP6V1C2 WILD-TYPE	117	49	35

'CDC14A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.058

Table S1201. Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDC14A MUTATED	0	13	1	1	0
CDC14A WILD-TYPE	79	113	26	42	12

Figure S677. Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDC14A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00545 (Fisher's exact test), Q value = 0.036

Table S1202. Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDC14A MUTATED	0	8	2	1
CDC14A WILD-TYPE	71	68	32	62

Figure S678. Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDC14A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00807 (Fisher's exact test), Q value = 0.046

Table S1203. Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CDC14A MUTATED	7	0	5
CDC14A WILD-TYPE	71	86	80

Figure S679. Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDC14A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00177 (Fisher's exact test), Q value = 0.019

Table S1204. Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CDC14A MUTATED	1	4	7	0
CDC14A WILD-TYPE	32	74	44	87

Figure S680. Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.12

Table S1205. Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CDC14A MUTATED	7	1	1	4	1
CDC14A WILD-TYPE	58	58	41	30	56

Figure S681. Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDC14A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00637 (Fisher's exact test), Q value = 0.039

Table S1206. Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CDC14A MUTATED	2	1	0	2	6	0	3
CDC14A WILD-TYPE	34	20	48	54	33	37	17

Figure S682. Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1207. Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CDC14A MUTATED	15	0	0
CDC14A WILD-TYPE	111	96	67

Figure S683. Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0029

Table S1208. Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CDC14A MUTATED	9	6	0	0
CDC14A WILD-TYPE	47	99	60	68

Figure S684. Get High-res Image Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.31

Table S1209. Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CDC14A MUTATED	2	0	4	4	0	0
CDC14A WILD-TYPE	32	18	55	34	19	43

'CDC14A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.051 (Fisher's exact test), Q value = 0.14

Table S1210. Gene #121: 'CDC14A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CDC14A MUTATED	6	0	4
CDC14A WILD-TYPE	116	51	34

'DDX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.056

Table S1211. Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DDX17 MUTATED	0	12	0	1	0
DDX17 WILD-TYPE	79	114	27	42	12

Figure S685. Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00602 (Fisher's exact test), Q value = 0.038

Table S1212. Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DDX17 MUTATED	0	8	1	1
DDX17 WILD-TYPE	71	68	33	62

Figure S686. Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DDX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.057

Table S1213. Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DDX17 MUTATED	9	1	3
DDX17 WILD-TYPE	69	85	82

Figure S687. Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DDX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.085

Table S1214. Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DDX17 MUTATED	3	3	6	1
DDX17 WILD-TYPE	30	75	45	86

Figure S688. Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0093 (Fisher's exact test), Q value = 0.05

Table S1215. Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DDX17 MUTATED	6	0	2	3	0
DDX17 WILD-TYPE	59	59	40	31	57

Figure S689. Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DDX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00688 (Fisher's exact test), Q value = 0.041

Table S1216. Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DDX17 MUTATED	1	0	0	2	5	0	3
DDX17 WILD-TYPE	35	21	48	54	34	37	17

Figure S690. Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00798 (Fisher's exact test), Q value = 0.046

Table S1217. Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DDX17 MUTATED	11	2	0
DDX17 WILD-TYPE	115	94	67

Figure S691. Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.005

Table S1218. Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DDX17 MUTATED	9	3	0	1
DDX17 WILD-TYPE	47	102	60	67

Figure S692. Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.34

Table S1219. Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DDX17 MUTATED	2	0	3	4	0	0
DDX17 WILD-TYPE	32	18	56	34	19	43

'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0459 (Fisher's exact test), Q value = 0.13

Table S1220. Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DDX17 MUTATED	5	0	4
DDX17 WILD-TYPE	117	51	34

Figure S693. Get High-res Image Gene #122: 'DDX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C19ORF40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.67

Table S1221. Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C19ORF40 MUTATED	1	5	0	0	0
C19ORF40 WILD-TYPE	78	121	27	43	12

'C19ORF40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1222. Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C19ORF40 MUTATED	1	1	0	1
C19ORF40 WILD-TYPE	70	75	34	62

'C19ORF40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.29

Table S1223. Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C19ORF40 MUTATED	3	0	3
C19ORF40 WILD-TYPE	75	86	82

'C19ORF40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S1224. Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C19ORF40 MUTATED	1	2	3	0
C19ORF40 WILD-TYPE	32	76	48	87

'C19ORF40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.78

Table S1225. Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C19ORF40 MUTATED	2	1	1	1	0
C19ORF40 WILD-TYPE	63	58	41	33	57

'C19ORF40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.64

Table S1226. Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C19ORF40 MUTATED	2	0	0	2	1	0	0
C19ORF40 WILD-TYPE	34	21	48	54	38	37	20

'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.079

Table S1227. Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C19ORF40 MUTATED	6	0	0
C19ORF40 WILD-TYPE	120	96	67

Figure S694. Get High-res Image Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S1228. Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C19ORF40 MUTATED	2	4	0	0
C19ORF40 WILD-TYPE	54	101	60	68

'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.61

Table S1229. Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C19ORF40 MUTATED	0	1	1	1	0	0
C19ORF40 WILD-TYPE	34	17	58	37	19	43

'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S1230. Gene #123: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C19ORF40 MUTATED	1	0	2
C19ORF40 WILD-TYPE	121	51	36

'ABCC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00974 (Fisher's exact test), Q value = 0.05

Table S1231. Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ABCC4 MUTATED	1	14	1	0	1
ABCC4 WILD-TYPE	78	112	26	43	11

Figure S695. Get High-res Image Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.16

Table S1232. Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ABCC4 MUTATED	0	6	2	4
ABCC4 WILD-TYPE	71	70	32	59

'ABCC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.43

Table S1233. Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ABCC4 MUTATED	7	3	6
ABCC4 WILD-TYPE	71	83	79

'ABCC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S1234. Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ABCC4 MUTATED	3	6	5	2
ABCC4 WILD-TYPE	30	72	46	85

'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.11

Table S1235. Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ABCC4 MUTATED	9	1	3	2	1
ABCC4 WILD-TYPE	56	58	39	32	56

Figure S696. Get High-res Image Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0281 (Fisher's exact test), Q value = 0.094

Table S1236. Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ABCC4 MUTATED	3	0	0	4	4	1	4
ABCC4 WILD-TYPE	33	21	48	52	35	36	16

Figure S697. Get High-res Image Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00456 (Fisher's exact test), Q value = 0.032

Table S1237. Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ABCC4 MUTATED	14	2	1
ABCC4 WILD-TYPE	112	94	66

Figure S698. Get High-res Image Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.22

Table S1238. Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ABCC4 MUTATED	7	6	1	3
ABCC4 WILD-TYPE	49	99	59	65

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.22

Table S1239. Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ABCC4 MUTATED	2	0	7	1	1	0
ABCC4 WILD-TYPE	32	18	52	37	18	43

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.57

Table S1240. Gene #124: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ABCC4 MUTATED	8	1	2
ABCC4 WILD-TYPE	114	50	36

'ZFC3H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.33

Table S1241. Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZFC3H1 MUTATED	1	10	1	2	1
ZFC3H1 WILD-TYPE	78	116	26	41	11

'ZFC3H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S1242. Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZFC3H1 MUTATED	1	7	1	2
ZFC3H1 WILD-TYPE	70	69	33	61

'ZFC3H1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.3

Table S1243. Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZFC3H1 MUTATED	7	4	2
ZFC3H1 WILD-TYPE	71	82	83

'ZFC3H1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0731 (Fisher's exact test), Q value = 0.17

Table S1244. Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZFC3H1 MUTATED	0	2	6	5
ZFC3H1 WILD-TYPE	33	76	45	82

'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S1245. Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZFC3H1 MUTATED	8	1	2	2	2
ZFC3H1 WILD-TYPE	57	58	40	32	55

'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0612 (Fisher's exact test), Q value = 0.15

Table S1246. Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZFC3H1 MUTATED	4	0	1	3	4	0	3
ZFC3H1 WILD-TYPE	32	21	47	53	35	37	17

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.18

Table S1247. Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZFC3H1 MUTATED	11	2	2
ZFC3H1 WILD-TYPE	115	94	65

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.38

Table S1248. Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZFC3H1 MUTATED	6	5	2	2
ZFC3H1 WILD-TYPE	50	100	58	66

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 0.2

Table S1249. Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZFC3H1 MUTATED	1	2	3	2	3	0
ZFC3H1 WILD-TYPE	33	16	56	36	16	43

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.078

Table S1250. Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZFC3H1 MUTATED	6	0	5
ZFC3H1 WILD-TYPE	116	51	33

Figure S699. Get High-res Image Gene #125: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZKSCAN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.1

Table S1251. Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZKSCAN5 MUTATED	0	8	0	0	1
ZKSCAN5 WILD-TYPE	79	118	27	43	11

Figure S700. Get High-res Image Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.66

Table S1252. Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZKSCAN5 MUTATED	1	3	2	2
ZKSCAN5 WILD-TYPE	70	73	32	61

'ZKSCAN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.092

Table S1253. Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZKSCAN5 MUTATED	5	0	2
ZKSCAN5 WILD-TYPE	73	86	83

Figure S701. Get High-res Image Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.71

Table S1254. Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZKSCAN5 MUTATED	1	3	2	1
ZKSCAN5 WILD-TYPE	32	75	49	86

'ZKSCAN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.1

Table S1255. Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZKSCAN5 MUTATED	5	0	2	2	0
ZKSCAN5 WILD-TYPE	60	59	40	32	57

Figure S702. Get High-res Image Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.087

Table S1256. Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZKSCAN5 MUTATED	2	0	0	5	0	0	2
ZKSCAN5 WILD-TYPE	34	21	48	51	39	37	18

Figure S703. Get High-res Image Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.23

Table S1257. Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZKSCAN5 MUTATED	7	2	0
ZKSCAN5 WILD-TYPE	119	94	67

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S1258. Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZKSCAN5 MUTATED	4	4	0	1
ZKSCAN5 WILD-TYPE	52	101	60	67

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S1259. Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZKSCAN5 MUTATED	0	2	3	3	0	0
ZKSCAN5 WILD-TYPE	34	16	56	35	19	43

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.37

Table S1260. Gene #126: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZKSCAN5 MUTATED	6	0	2
ZKSCAN5 WILD-TYPE	116	51	36

'RABGAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00159 (Fisher's exact test), Q value = 0.017

Table S1261. Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RABGAP1 MUTATED	0	15	1	1	2
RABGAP1 WILD-TYPE	79	111	26	42	10

Figure S704. Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RABGAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1262. Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RABGAP1 MUTATED	0	15	2	0
RABGAP1 WILD-TYPE	71	61	32	63

Figure S705. Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RABGAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 0.16

Table S1263. Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RABGAP1 MUTATED	9	2	5
RABGAP1 WILD-TYPE	69	84	80

'RABGAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00535 (Fisher's exact test), Q value = 0.036

Table S1264. Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RABGAP1 MUTATED	2	3	9	2
RABGAP1 WILD-TYPE	31	75	42	85

Figure S706. Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1265. Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RABGAP1 MUTATED	12	0	0	3	0
RABGAP1 WILD-TYPE	53	59	42	31	57

Figure S707. Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RABGAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1266. Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RABGAP1 MUTATED	0	0	0	3	5	0	7
RABGAP1 WILD-TYPE	36	21	48	53	34	37	13

Figure S708. Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.005

Table S1267. Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RABGAP1 MUTATED	17	3	0
RABGAP1 WILD-TYPE	109	93	67

Figure S709. Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1268. Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RABGAP1 MUTATED	15	3	2	0
RABGAP1 WILD-TYPE	41	102	58	68

Figure S710. Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.31

Table S1269. Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RABGAP1 MUTATED	5	1	4	5	0	1
RABGAP1 WILD-TYPE	29	17	55	33	19	42

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00605 (Fisher's exact test), Q value = 0.038

Table S1270. Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RABGAP1 MUTATED	6	2	8
RABGAP1 WILD-TYPE	116	49	30

Figure S711. Get High-res Image Gene #127: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RNF145 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.15

Table S1271. Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RNF145 MUTATED	2	10	1	2	3
RNF145 WILD-TYPE	77	116	26	41	9

'RNF145 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.057

Table S1272. Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RNF145 MUTATED	1	9	3	1
RNF145 WILD-TYPE	70	67	31	62

Figure S712. Get High-res Image Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF145 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.73

Table S1273. Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RNF145 MUTATED	6	4	4
RNF145 WILD-TYPE	72	82	81

'RNF145 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.46

Table S1274. Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RNF145 MUTATED	4	4	3	3
RNF145 WILD-TYPE	29	74	48	84

'RNF145 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.082

Table S1275. Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RNF145 MUTATED	10	3	1	1	1
RNF145 WILD-TYPE	55	56	41	33	56

Figure S713. Get High-res Image Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RNF145 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.064

Table S1276. Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RNF145 MUTATED	5	0	0	6	1	1	3
RNF145 WILD-TYPE	31	21	48	50	38	36	17

Figure S714. Get High-res Image Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RNF145 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.058

Table S1277. Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RNF145 MUTATED	14	3	1
RNF145 WILD-TYPE	112	93	66

Figure S715. Get High-res Image Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RNF145 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.037 (Fisher's exact test), Q value = 0.11

Table S1278. Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RNF145 MUTATED	8	6	3	1
RNF145 WILD-TYPE	48	99	57	67

Figure S716. Get High-res Image Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RNF145 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 0.14

Table S1279. Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RNF145 MUTATED	1	4	5	1	0	1
RNF145 WILD-TYPE	33	14	54	37	19	42

'RNF145 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.5

Table S1280. Gene #128: 'RNF145 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RNF145 MUTATED	6	2	4
RNF145 WILD-TYPE	116	49	34

'SNAPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.31

Table S1281. Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SNAPC1 MUTATED	0	4	1	1	1
SNAPC1 WILD-TYPE	79	122	26	42	11

'SNAPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.064

Table S1282. Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SNAPC1 MUTATED	0	5	2	0
SNAPC1 WILD-TYPE	71	71	32	63

Figure S717. Get High-res Image Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SNAPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.51

Table S1283. Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SNAPC1 MUTATED	2	0	2
SNAPC1 WILD-TYPE	76	86	83

'SNAPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 0.87

Table S1284. Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SNAPC1 MUTATED	1	1	1	1
SNAPC1 WILD-TYPE	32	77	50	86

'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.28

Table S1285. Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SNAPC1 MUTATED	4	1	2	0	0
SNAPC1 WILD-TYPE	61	58	40	34	57

'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.62

Table S1286. Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SNAPC1 MUTATED	1	0	1	2	1	0	2
SNAPC1 WILD-TYPE	35	21	47	54	38	37	18

'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.13

Table S1287. Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SNAPC1 MUTATED	6	0	1
SNAPC1 WILD-TYPE	120	96	66

Figure S718. Get High-res Image Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0951 (Fisher's exact test), Q value = 0.2

Table S1288. Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SNAPC1 MUTATED	4	2	0	1
SNAPC1 WILD-TYPE	52	103	60	67

'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.34

Table S1289. Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SNAPC1 MUTATED	0	1	2	3	0	0
SNAPC1 WILD-TYPE	34	17	57	35	19	43

'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.43

Table S1290. Gene #129: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SNAPC1 MUTATED	4	0	2
SNAPC1 WILD-TYPE	118	51	36

'CCDC153 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.31

Table S1291. Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC153 MUTATED	0	7	0	1	0
CCDC153 WILD-TYPE	79	119	27	42	12

'CCDC153 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.071

Table S1292. Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CCDC153 MUTATED	0	6	0	1
CCDC153 WILD-TYPE	71	70	34	62

Figure S719. Get High-res Image Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC153 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.66

Table S1293. Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CCDC153 MUTATED	3	1	3
CCDC153 WILD-TYPE	75	85	82

'CCDC153 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.49

Table S1294. Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CCDC153 MUTATED	2	2	2	1
CCDC153 WILD-TYPE	31	76	49	86

'CCDC153 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0703 (Fisher's exact test), Q value = 0.17

Table S1295. Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CCDC153 MUTATED	5	1	0	1	0
CCDC153 WILD-TYPE	60	58	42	33	57

'CCDC153 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.087

Table S1296. Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CCDC153 MUTATED	2	0	0	1	1	0	3
CCDC153 WILD-TYPE	34	21	48	55	38	37	17

Figure S720. Get High-res Image Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC153 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.29

Table S1297. Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CCDC153 MUTATED	6	2	0
CCDC153 WILD-TYPE	120	94	67

'CCDC153 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.073

Table S1298. Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CCDC153 MUTATED	5	2	1	0
CCDC153 WILD-TYPE	51	103	59	68

Figure S721. Get High-res Image Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC153 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.65

Table S1299. Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CCDC153 MUTATED	0	1	4	1	0	1
CCDC153 WILD-TYPE	34	17	55	37	19	42

'CCDC153 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0455 (Fisher's exact test), Q value = 0.13

Table S1300. Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CCDC153 MUTATED	2	1	4
CCDC153 WILD-TYPE	120	50	34

Figure S722. Get High-res Image Gene #130: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OPTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.33

Table S1301. Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OPTN MUTATED	0	7	1	1	0
OPTN WILD-TYPE	79	119	26	42	12

'OPTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.28

Table S1302. Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OPTN MUTATED	0	4	0	2
OPTN WILD-TYPE	71	72	34	61

'OPTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.071

Table S1303. Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OPTN MUTATED	6	0	3
OPTN WILD-TYPE	72	86	82

Figure S723. Get High-res Image Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OPTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.24

Table S1304. Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OPTN MUTATED	2	2	4	1
OPTN WILD-TYPE	31	76	47	86

'OPTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.26

Table S1305. Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OPTN MUTATED	3	0	2	3	1
OPTN WILD-TYPE	62	59	40	31	56

'OPTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0508 (Fisher's exact test), Q value = 0.14

Table S1306. Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OPTN MUTATED	2	0	0	2	2	0	3
OPTN WILD-TYPE	34	21	48	54	37	37	17

'OPTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S1307. Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OPTN MUTATED	7	2	0
OPTN WILD-TYPE	119	94	67

'OPTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S1308. Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OPTN MUTATED	4	4	0	1
OPTN WILD-TYPE	52	101	60	67

'OPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.55

Table S1309. Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OPTN MUTATED	0	0	3	2	0	0
OPTN WILD-TYPE	34	18	56	36	19	43

'OPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.57

Table S1310. Gene #131: 'OPTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OPTN MUTATED	4	0	1
OPTN WILD-TYPE	118	51	37

'PLEKHA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00734 (Fisher's exact test), Q value = 0.043

Table S1311. Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLEKHA5 MUTATED	0	11	0	2	2
PLEKHA5 WILD-TYPE	79	115	27	41	10

Figure S724. Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.007

Table S1312. Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLEKHA5 MUTATED	0	9	2	0
PLEKHA5 WILD-TYPE	71	67	32	63

Figure S725. Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.098

Table S1313. Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PLEKHA5 MUTATED	8	1	4
PLEKHA5 WILD-TYPE	70	85	81

Figure S726. Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.12

Table S1314. Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PLEKHA5 MUTATED	3	2	6	2
PLEKHA5 WILD-TYPE	30	76	45	85

Figure S727. Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00051 (Fisher's exact test), Q value = 0.0085

Table S1315. Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PLEKHA5 MUTATED	9	1	0	3	0
PLEKHA5 WILD-TYPE	56	58	42	31	57

Figure S728. Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.083

Table S1316. Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PLEKHA5 MUTATED	2	1	0	4	2	0	4
PLEKHA5 WILD-TYPE	34	20	48	52	37	37	16

Figure S729. Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0058

Table S1317. Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PLEKHA5 MUTATED	14	1	0
PLEKHA5 WILD-TYPE	112	95	67

Figure S730. Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S1318. Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PLEKHA5 MUTATED	10	5	0	0
PLEKHA5 WILD-TYPE	46	100	60	68

Figure S731. Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S1319. Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PLEKHA5 MUTATED	1	2	4	2	0	0
PLEKHA5 WILD-TYPE	33	16	55	36	19	43

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00155 (Fisher's exact test), Q value = 0.017

Table S1320. Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PLEKHA5 MUTATED	3	0	6
PLEKHA5 WILD-TYPE	119	51	32

Figure S732. Get High-res Image Gene #132: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SREBF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 0.82

Table S1321. Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SREBF2 MUTATED	2	7	0	1	0
SREBF2 WILD-TYPE	77	119	27	42	12

'SREBF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 0.17

Table S1322. Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SREBF2 MUTATED	0	5	0	3
SREBF2 WILD-TYPE	71	71	34	60

'SREBF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.4

Table S1323. Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SREBF2 MUTATED	4	1	4
SREBF2 WILD-TYPE	74	85	81

'SREBF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0544 (Fisher's exact test), Q value = 0.14

Table S1324. Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SREBF2 MUTATED	1	5	3	0
SREBF2 WILD-TYPE	32	73	48	87

'SREBF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.31

Table S1325. Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SREBF2 MUTATED	3	1	0	2	0
SREBF2 WILD-TYPE	62	58	42	32	57

'SREBF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.42

Table S1326. Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SREBF2 MUTATED	2	0	0	1	2	0	1
SREBF2 WILD-TYPE	34	21	48	55	37	37	19

'SREBF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.053

Table S1327. Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SREBF2 MUTATED	9	1	0
SREBF2 WILD-TYPE	117	95	67

Figure S733. Get High-res Image Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SREBF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.48

Table S1328. Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SREBF2 MUTATED	4	4	1	1
SREBF2 WILD-TYPE	52	101	59	67

'SREBF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.6

Table S1329. Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SREBF2 MUTATED	1	1	4	0	0	1
SREBF2 WILD-TYPE	33	17	55	38	19	42

'SREBF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 0.81

Table S1330. Gene #133: 'SREBF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SREBF2 MUTATED	4	1	2
SREBF2 WILD-TYPE	118	50	36

'FASTKD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.21

Table S1331. Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FASTKD1 MUTATED	0	7	1	2	1
FASTKD1 WILD-TYPE	79	119	26	41	11

'FASTKD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.38

Table S1332. Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FASTKD1 MUTATED	2	6	2	1
FASTKD1 WILD-TYPE	69	70	32	62

'FASTKD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.61

Table S1333. Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FASTKD1 MUTATED	4	2	5
FASTKD1 WILD-TYPE	74	84	80

'FASTKD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.51

Table S1334. Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FASTKD1 MUTATED	2	3	4	2
FASTKD1 WILD-TYPE	31	75	47	85

'FASTKD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.28

Table S1335. Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FASTKD1 MUTATED	5	1	2	1	0
FASTKD1 WILD-TYPE	60	58	40	33	57

'FASTKD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.62

Table S1336. Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FASTKD1 MUTATED	1	1	1	2	2	0	2
FASTKD1 WILD-TYPE	35	20	47	54	37	37	18

'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.076

Table S1337. Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FASTKD1 MUTATED	8	0	3
FASTKD1 WILD-TYPE	118	96	64

Figure S734. Get High-res Image Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.31

Table S1338. Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FASTKD1 MUTATED	4	5	0	2
FASTKD1 WILD-TYPE	52	100	60	66

'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.27

Table S1339. Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FASTKD1 MUTATED	3	2	2	1	0	0
FASTKD1 WILD-TYPE	31	16	57	37	19	43

'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.087

Table S1340. Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FASTKD1 MUTATED	4	0	4
FASTKD1 WILD-TYPE	118	51	34

Figure S735. Get High-res Image Gene #134: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAP7D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.45

Table S1341. Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAP7D1 MUTATED	1	9	1	1	0
MAP7D1 WILD-TYPE	78	117	26	42	12

'MAP7D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.36

Table S1342. Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAP7D1 MUTATED	2	5	3	1
MAP7D1 WILD-TYPE	69	71	31	62

'MAP7D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.43

Table S1343. Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MAP7D1 MUTATED	3	2	6
MAP7D1 WILD-TYPE	75	84	79

'MAP7D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.57

Table S1344. Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MAP7D1 MUTATED	1	4	4	2
MAP7D1 WILD-TYPE	32	74	47	85

'MAP7D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 0.17

Table S1345. Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MAP7D1 MUTATED	7	1	0	1	2
MAP7D1 WILD-TYPE	58	58	42	33	55

'MAP7D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0881 (Fisher's exact test), Q value = 0.19

Table S1346. Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MAP7D1 MUTATED	3	0	0	2	1	2	3
MAP7D1 WILD-TYPE	33	21	48	54	38	35	17

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.4

Table S1347. Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MAP7D1 MUTATED	8	2	2
MAP7D1 WILD-TYPE	118	94	65

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 0.76

Table S1348. Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MAP7D1 MUTATED	4	4	2	2
MAP7D1 WILD-TYPE	52	101	58	66

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 0.92

Table S1349. Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MAP7D1 MUTATED	2	1	4	2	0	1
MAP7D1 WILD-TYPE	32	17	55	36	19	42

'MAP7D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 0.55

Table S1350. Gene #135: 'MAP7D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MAP7D1 MUTATED	6	1	3
MAP7D1 WILD-TYPE	116	50	35

'SLC27A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.15

Table S1351. Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC27A3 MUTATED	0	8	0	0	0
SLC27A3 WILD-TYPE	79	118	27	43	12

'SLC27A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.31

Table S1352. Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC27A3 MUTATED	0	4	1	1
SLC27A3 WILD-TYPE	71	72	33	62

'SLC27A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.51

Table S1353. Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC27A3 MUTATED	3	1	4
SLC27A3 WILD-TYPE	75	85	81

'SLC27A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S1354. Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC27A3 MUTATED	1	2	4	1
SLC27A3 WILD-TYPE	32	76	47	86

'SLC27A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.43

Table S1355. Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC27A3 MUTATED	3	1	2	2	0
SLC27A3 WILD-TYPE	62	58	40	32	57

'SLC27A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.23

Table S1356. Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC27A3 MUTATED	1	0	0	2	3	0	2
SLC27A3 WILD-TYPE	35	21	48	54	36	37	18

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.091

Table S1357. Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC27A3 MUTATED	8	1	0
SLC27A3 WILD-TYPE	118	95	67

Figure S736. Get High-res Image Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00649 (Fisher's exact test), Q value = 0.04

Table S1358. Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC27A3 MUTATED	6	2	0	1
SLC27A3 WILD-TYPE	50	103	60	67

Figure S737. Get High-res Image Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.52

Table S1359. Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLC27A3 MUTATED	2	0	1	2	1	0
SLC27A3 WILD-TYPE	32	18	58	36	18	43

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 0.2

Table S1360. Gene #136: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLC27A3 MUTATED	3	0	3
SLC27A3 WILD-TYPE	119	51	35

'INF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.27

Table S1361. Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
INF2 MUTATED	1	8	1	0	1
INF2 WILD-TYPE	78	118	26	43	11

'INF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.29

Table S1362. Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
INF2 MUTATED	1	6	1	1
INF2 WILD-TYPE	70	70	33	62

'INF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0931 (Fisher's exact test), Q value = 0.2

Table S1363. Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
INF2 MUTATED	6	1	2
INF2 WILD-TYPE	72	85	83

'INF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.29

Table S1364. Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
INF2 MUTATED	3	3	2	1
INF2 WILD-TYPE	30	75	49	86

'INF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.17

Table S1365. Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
INF2 MUTATED	6	0	2	2	1
INF2 WILD-TYPE	59	59	40	32	56

'INF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0518 (Fisher's exact test), Q value = 0.14

Table S1366. Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
INF2 MUTATED	2	0	0	4	2	0	3
INF2 WILD-TYPE	34	21	48	52	37	37	17

'INF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.24

Table S1367. Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
INF2 MUTATED	8	1	2
INF2 WILD-TYPE	118	95	65

'INF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 0.13

Table S1368. Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
INF2 MUTATED	5	5	0	1
INF2 WILD-TYPE	51	100	60	67

Figure S738. Get High-res Image Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.61

Table S1369. Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
INF2 MUTATED	0	1	3	3	0	1
INF2 WILD-TYPE	34	17	56	35	19	42

'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S1370. Gene #137: 'INF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
INF2 MUTATED	5	0	3
INF2 WILD-TYPE	117	51	35

'C13ORF33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.31

Table S1371. Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C13ORF33 MUTATED	0	4	1	1	1
C13ORF33 WILD-TYPE	79	122	26	42	11

'C13ORF33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.065

Table S1372. Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C13ORF33 MUTATED	0	5	2	0
C13ORF33 WILD-TYPE	71	71	32	63

Figure S739. Get High-res Image Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C13ORF33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.067

Table S1373. Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C13ORF33 MUTATED	5	1	0
C13ORF33 WILD-TYPE	73	85	85

Figure S740. Get High-res Image Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C13ORF33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.4

Table S1374. Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C13ORF33 MUTATED	1	1	3	1
C13ORF33 WILD-TYPE	32	77	48	86

'C13ORF33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0748 (Fisher's exact test), Q value = 0.17

Table S1375. Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C13ORF33 MUTATED	4	0	1	0	0
C13ORF33 WILD-TYPE	61	59	41	34	57

'C13ORF33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.0062

Table S1376. Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C13ORF33 MUTATED	0	0	0	1	0	0	4
C13ORF33 WILD-TYPE	36	21	48	55	39	37	16

Figure S741. Get High-res Image Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S1377. Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C13ORF33 MUTATED	4	2	1
C13ORF33 WILD-TYPE	122	94	66

'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.35

Table S1378. Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C13ORF33 MUTATED	3	3	1	0
C13ORF33 WILD-TYPE	53	102	59	68

'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 0.18

Table S1379. Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C13ORF33 MUTATED	1	0	0	4	0	1
C13ORF33 WILD-TYPE	33	18	59	34	19	42

'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.71

Table S1380. Gene #138: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C13ORF33 MUTATED	3	1	2
C13ORF33 WILD-TYPE	119	50	36

'AKAP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.56

Table S1381. Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AKAP13 MUTATED	4	16	3	4	1
AKAP13 WILD-TYPE	75	110	24	39	11

'AKAP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00394 (Fisher's exact test), Q value = 0.03

Table S1382. Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AKAP13 MUTATED	4	13	0	2
AKAP13 WILD-TYPE	67	63	34	61

Figure S742. Get High-res Image Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AKAP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0614 (Fisher's exact test), Q value = 0.15

Table S1383. Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
AKAP13 MUTATED	12	4	10
AKAP13 WILD-TYPE	66	82	75

'AKAP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.064

Table S1384. Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
AKAP13 MUTATED	3	6	12	5
AKAP13 WILD-TYPE	30	72	39	82

Figure S743. Get High-res Image Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S1385. Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
AKAP13 MUTATED	10	2	5	4	4
AKAP13 WILD-TYPE	55	57	37	30	53

'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00254 (Fisher's exact test), Q value = 0.023

Table S1386. Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
AKAP13 MUTATED	5	0	0	8	9	2	1
AKAP13 WILD-TYPE	31	21	48	48	30	35	19

Figure S744. Get High-res Image Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S1387. Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
AKAP13 MUTATED	23	1	4
AKAP13 WILD-TYPE	103	95	63

Figure S745. Get High-res Image Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00132 (Fisher's exact test), Q value = 0.015

Table S1388. Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
AKAP13 MUTATED	13	9	1	5
AKAP13 WILD-TYPE	43	96	59	63

Figure S746. Get High-res Image Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.082

Table S1389. Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
AKAP13 MUTATED	1	3	7	5	0	0
AKAP13 WILD-TYPE	33	15	52	33	19	43

Figure S747. Get High-res Image Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00837 (Fisher's exact test), Q value = 0.047

Table S1390. Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
AKAP13 MUTATED	10	0	6
AKAP13 WILD-TYPE	112	51	32

Figure S748. Get High-res Image Gene #139: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DYRK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 0.2

Table S1391. Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DYRK4 MUTATED	0	7	0	1	1
DYRK4 WILD-TYPE	79	119	27	42	11

'DYRK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00881 (Fisher's exact test), Q value = 0.048

Table S1392. Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DYRK4 MUTATED	0	6	1	0
DYRK4 WILD-TYPE	71	70	33	63

Figure S749. Get High-res Image Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DYRK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.68

Table S1393. Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DYRK4 MUTATED	4	2	2
DYRK4 WILD-TYPE	74	84	83

'DYRK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.33

Table S1394. Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DYRK4 MUTATED	1	1	4	2
DYRK4 WILD-TYPE	32	77	47	85

'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.25

Table S1395. Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DYRK4 MUTATED	5	2	2	0	0
DYRK4 WILD-TYPE	60	57	40	34	57

'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.094

Table S1396. Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DYRK4 MUTATED	1	0	1	2	1	0	4
DYRK4 WILD-TYPE	35	21	47	54	38	37	16

Figure S750. Get High-res Image Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.47

Table S1397. Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DYRK4 MUTATED	5	1	3
DYRK4 WILD-TYPE	121	95	64

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 0.18

Table S1398. Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DYRK4 MUTATED	5	2	1	1
DYRK4 WILD-TYPE	51	103	59	67

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.082

Table S1399. Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DYRK4 MUTATED	1	1	0	4	0	0
DYRK4 WILD-TYPE	33	17	59	34	19	43

Figure S751. Get High-res Image Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S1400. Gene #140: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DYRK4 MUTATED	4	0	2
DYRK4 WILD-TYPE	118	51	36

'FOXN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.22

Table S1401. Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FOXN3 MUTATED	0	7	1	0	0
FOXN3 WILD-TYPE	79	119	26	43	12

'FOXN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.016

Table S1402. Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FOXN3 MUTATED	0	7	0	0
FOXN3 WILD-TYPE	71	69	34	63

Figure S752. Get High-res Image Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FOXN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00317 (Fisher's exact test), Q value = 0.026

Table S1403. Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FOXN3 MUTATED	6	0	1
FOXN3 WILD-TYPE	72	86	84

Figure S753. Get High-res Image Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FOXN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0512 (Fisher's exact test), Q value = 0.14

Table S1404. Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FOXN3 MUTATED	1	0	4	2
FOXN3 WILD-TYPE	32	78	47	85

'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S1405. Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FOXN3 MUTATED	3	2	0	2	0
FOXN3 WILD-TYPE	62	57	42	32	57

'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0632 (Fisher's exact test), Q value = 0.16

Table S1406. Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FOXN3 MUTATED	1	0	1	0	3	0	2
FOXN3 WILD-TYPE	35	21	47	56	36	37	18

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.36

Table S1407. Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FOXN3 MUTATED	6	1	1
FOXN3 WILD-TYPE	120	95	66

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.092

Table S1408. Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FOXN3 MUTATED	5	2	0	1
FOXN3 WILD-TYPE	51	103	60	67

Figure S754. Get High-res Image Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.41

Table S1409. Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FOXN3 MUTATED	1	2	2	2	0	0
FOXN3 WILD-TYPE	33	16	57	36	19	43

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S1410. Gene #141: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FOXN3 MUTATED	4	0	3
FOXN3 WILD-TYPE	118	51	35

'SLC16A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 0.66

Table S1411. Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC16A1 MUTATED	1	5	0	0	0
SLC16A1 WILD-TYPE	78	121	27	43	12

'SLC16A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.97

Table S1412. Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC16A1 MUTATED	1	2	1	1
SLC16A1 WILD-TYPE	70	74	33	62

'SLC16A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.56

Table S1413. Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC16A1 MUTATED	3	1	1
SLC16A1 WILD-TYPE	75	85	84

'SLC16A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S1414. Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC16A1 MUTATED	2	2	1	0
SLC16A1 WILD-TYPE	31	76	50	87

'SLC16A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.44

Table S1415. Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC16A1 MUTATED	4	0	1	1	1
SLC16A1 WILD-TYPE	61	59	41	33	56

'SLC16A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0715 (Fisher's exact test), Q value = 0.17

Table S1416. Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC16A1 MUTATED	1	0	0	1	1	1	3
SLC16A1 WILD-TYPE	35	21	48	55	38	36	17

'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.13

Table S1417. Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC16A1 MUTATED	6	0	1
SLC16A1 WILD-TYPE	120	96	66

'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.37

Table S1418. Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC16A1 MUTATED	3	2	0	2
SLC16A1 WILD-TYPE	53	103	60	66

'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.73

Table S1419. Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLC16A1 MUTATED	2	0	2	1	0	0
SLC16A1 WILD-TYPE	32	18	57	37	19	43

'SLC16A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.41

Table S1420. Gene #142: 'SLC16A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLC16A1 MUTATED	3	0	2
SLC16A1 WILD-TYPE	119	51	36

'TNFRSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.12

Table S1421. Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TNFRSF9 MUTATED	1	7	0	0	2
TNFRSF9 WILD-TYPE	78	119	27	43	10

Figure S755. Get High-res Image Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNFRSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.42

Table S1422. Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TNFRSF9 MUTATED	1	5	0	2
TNFRSF9 WILD-TYPE	70	71	34	61

'TNFRSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.48

Table S1423. Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TNFRSF9 MUTATED	4	3	1
TNFRSF9 WILD-TYPE	74	83	84

'TNFRSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.59

Table S1424. Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TNFRSF9 MUTATED	2	1	2	3
TNFRSF9 WILD-TYPE	31	77	49	84

'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.078

Table S1425. Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TNFRSF9 MUTATED	6	1	0	2	0
TNFRSF9 WILD-TYPE	59	58	42	32	57

Figure S756. Get High-res Image Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.073

Table S1426. Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TNFRSF9 MUTATED	2	0	0	1	3	0	3
TNFRSF9 WILD-TYPE	34	21	48	55	36	37	17

Figure S757. Get High-res Image Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.65

Table S1427. Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TNFRSF9 MUTATED	6	3	1
TNFRSF9 WILD-TYPE	120	93	66

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.27

Table S1428. Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TNFRSF9 MUTATED	4	4	2	0
TNFRSF9 WILD-TYPE	52	101	58	68

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.63

Table S1429. Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TNFRSF9 MUTATED	2	0	3	2	0	0
TNFRSF9 WILD-TYPE	32	18	56	36	19	43

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0641 (Fisher's exact test), Q value = 0.16

Table S1430. Gene #143: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TNFRSF9 MUTATED	7	0	0
TNFRSF9 WILD-TYPE	115	51	38

'RHOQ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.61

Table S1431. Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RHOQ MUTATED	0	4	0	1	0
RHOQ WILD-TYPE	79	122	27	42	12

'RHOQ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S1432. Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RHOQ MUTATED	0	3	0	0
RHOQ WILD-TYPE	71	73	34	63

'RHOQ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.43

Table S1433. Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RHOQ MUTATED	2	1	0
RHOQ WILD-TYPE	76	85	85

'RHOQ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1434. Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RHOQ MUTATED	0	1	1	1
RHOQ WILD-TYPE	33	77	50	86

'RHOQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.78

Table S1435. Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RHOQ MUTATED	2	1	1	1	0
RHOQ WILD-TYPE	63	58	41	33	57

'RHOQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.69

Table S1436. Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RHOQ MUTATED	1	0	0	2	1	0	1
RHOQ WILD-TYPE	35	21	48	54	38	37	19

'RHOQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.32

Table S1437. Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RHOQ MUTATED	4	0	1
RHOQ WILD-TYPE	122	96	66

'RHOQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.25

Table S1438. Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RHOQ MUTATED	3	1	0	1
RHOQ WILD-TYPE	53	104	60	67

'RHOQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0899 (Fisher's exact test), Q value = 0.19

Table S1439. Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RHOQ MUTATED	0	1	0	2	0	0
RHOQ WILD-TYPE	34	17	59	36	19	43

'RHOQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00549 (Fisher's exact test), Q value = 0.036

Table S1440. Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RHOQ MUTATED	0	0	3
RHOQ WILD-TYPE	122	51	35

Figure S758. Get High-res Image Gene #144: 'RHOQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRPF40B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.11

Table S1441. Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRPF40B MUTATED	1	12	1	0	0
PRPF40B WILD-TYPE	78	114	26	43	12

Figure S759. Get High-res Image Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRPF40B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.17

Table S1442. Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRPF40B MUTATED	1	7	2	1
PRPF40B WILD-TYPE	70	69	32	62

'PRPF40B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00161 (Fisher's exact test), Q value = 0.018

Table S1443. Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PRPF40B MUTATED	10	1	2
PRPF40B WILD-TYPE	68	85	83

Figure S760. Get High-res Image Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PRPF40B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00434 (Fisher's exact test), Q value = 0.031

Table S1444. Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PRPF40B MUTATED	5	2	5	1
PRPF40B WILD-TYPE	28	76	46	86

Figure S761. Get High-res Image Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PRPF40B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.051 (Fisher's exact test), Q value = 0.14

Table S1445. Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PRPF40B MUTATED	7	2	1	2	0
PRPF40B WILD-TYPE	58	57	41	32	57

'PRPF40B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0529 (Fisher's exact test), Q value = 0.14

Table S1446. Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PRPF40B MUTATED	4	0	0	3	3	0	2
PRPF40B WILD-TYPE	32	21	48	53	36	37	18

'PRPF40B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.061

Table S1447. Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PRPF40B MUTATED	11	3	0
PRPF40B WILD-TYPE	115	93	67

Figure S762. Get High-res Image Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRPF40B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00288 (Fisher's exact test), Q value = 0.025

Table S1448. Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PRPF40B MUTATED	8	1	3	2
PRPF40B WILD-TYPE	48	104	57	66

Figure S763. Get High-res Image Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PRPF40B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S1449. Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PRPF40B MUTATED	1	0	7	0	0	2
PRPF40B WILD-TYPE	33	18	52	38	19	41

'PRPF40B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.35

Table S1450. Gene #145: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PRPF40B MUTATED	4	2	4
PRPF40B WILD-TYPE	118	49	34

'STAT5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.45

Table S1451. Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STAT5B MUTATED	1	9	1	1	0
STAT5B WILD-TYPE	78	117	26	42	12

'STAT5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S1452. Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STAT5B MUTATED	1	6	2	1
STAT5B WILD-TYPE	70	70	32	62

'STAT5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00416 (Fisher's exact test), Q value = 0.03

Table S1453. Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
STAT5B MUTATED	8	1	1
STAT5B WILD-TYPE	70	85	84

Figure S764. Get High-res Image Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'STAT5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.059

Table S1454. Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
STAT5B MUTATED	3	1	5	1
STAT5B WILD-TYPE	30	77	46	86

Figure S765. Get High-res Image Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STAT5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00469 (Fisher's exact test), Q value = 0.032

Table S1455. Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
STAT5B MUTATED	7	0	1	1	0
STAT5B WILD-TYPE	58	59	41	33	57

Figure S766. Get High-res Image Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STAT5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.23

Table S1456. Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
STAT5B MUTATED	1	0	0	3	3	0	2
STAT5B WILD-TYPE	35	21	48	53	36	37	18

'STAT5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.12

Table S1457. Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
STAT5B MUTATED	9	3	0
STAT5B WILD-TYPE	117	93	67

Figure S767. Get High-res Image Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'STAT5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.01

Table S1458. Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
STAT5B MUTATED	8	2	2	0
STAT5B WILD-TYPE	48	103	58	68

Figure S768. Get High-res Image Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'STAT5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.77

Table S1459. Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
STAT5B MUTATED	1	1	5	2	0	1
STAT5B WILD-TYPE	33	17	54	36	19	42

'STAT5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S1460. Gene #146: 'STAT5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
STAT5B MUTATED	5	2	3
STAT5B WILD-TYPE	117	49	35

'CFI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.17

Table S1461. Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CFI MUTATED	1	8	0	1	2
CFI WILD-TYPE	78	118	27	42	10

'CFI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.27

Table S1462. Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CFI MUTATED	1	6	0	2
CFI WILD-TYPE	70	70	34	61

'CFI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 0.17

Table S1463. Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CFI MUTATED	7	2	2
CFI WILD-TYPE	71	84	83

'CFI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 0.55

Table S1464. Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CFI MUTATED	2	2	4	3
CFI WILD-TYPE	31	76	47	84

'CFI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.31

Table S1465. Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CFI MUTATED	7	1	1	1	2
CFI WILD-TYPE	58	58	41	33	55

'CFI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0981 (Fisher's exact test), Q value = 0.2

Table S1466. Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CFI MUTATED	1	0	0	4	3	1	3
CFI WILD-TYPE	35	21	48	52	36	36	17

'CFI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.73

Table S1467. Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CFI MUTATED	7	3	2
CFI WILD-TYPE	119	93	65

'CFI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.064

Table S1468. Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CFI MUTATED	7	2	2	1
CFI WILD-TYPE	49	103	58	67

Figure S769. Get High-res Image Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CFI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.54

Table S1469. Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CFI MUTATED	1	0	2	3	1	0
CFI WILD-TYPE	33	18	57	35	18	43

'CFI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S1470. Gene #147: 'CFI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CFI MUTATED	6	0	1
CFI WILD-TYPE	116	51	37

'FERMT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.37

Table S1471. Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FERMT2 MUTATED	0	6	0	1	0
FERMT2 WILD-TYPE	79	120	27	42	12

'FERMT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.061

Table S1472. Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FERMT2 MUTATED	0	5	0	0
FERMT2 WILD-TYPE	71	71	34	63

Figure S770. Get High-res Image Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FERMT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.012

Table S1473. Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FERMT2 MUTATED	6	0	0
FERMT2 WILD-TYPE	72	86	85

Figure S771. Get High-res Image Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FERMT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00488 (Fisher's exact test), Q value = 0.033

Table S1474. Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FERMT2 MUTATED	0	0	5	1
FERMT2 WILD-TYPE	33	78	46	86

Figure S772. Get High-res Image Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FERMT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0987 (Fisher's exact test), Q value = 0.2

Table S1475. Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FERMT2 MUTATED	4	0	1	1	0
FERMT2 WILD-TYPE	61	59	41	33	57

'FERMT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.0062

Table S1476. Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FERMT2 MUTATED	1	0	0	0	1	0	4
FERMT2 WILD-TYPE	35	21	48	56	38	37	16

Figure S773. Get High-res Image Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.55

Table S1477. Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FERMT2 MUTATED	5	1	1
FERMT2 WILD-TYPE	121	95	66

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0352 (Fisher's exact test), Q value = 0.11

Table S1478. Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FERMT2 MUTATED	4	3	0	0
FERMT2 WILD-TYPE	52	102	60	68

Figure S774. Get High-res Image Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.082

Table S1479. Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FERMT2 MUTATED	1	0	0	4	0	0
FERMT2 WILD-TYPE	33	18	59	34	19	43

Figure S775. Get High-res Image Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00477 (Fisher's exact test), Q value = 0.033

Table S1480. Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FERMT2 MUTATED	1	0	4
FERMT2 WILD-TYPE	121	51	34

Figure S776. Get High-res Image Gene #148: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ALDH3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S1481. Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ALDH3A1 MUTATED	0	7	1	1	1
ALDH3A1 WILD-TYPE	79	119	26	42	11

'ALDH3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.14

Table S1482. Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ALDH3A1 MUTATED	0	5	0	1
ALDH3A1 WILD-TYPE	71	71	34	62

'ALDH3A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0039 (Fisher's exact test), Q value = 0.03

Table S1483. Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ALDH3A1 MUTATED	8	1	1
ALDH3A1 WILD-TYPE	70	85	84

Figure S777. Get High-res Image Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0678 (Fisher's exact test), Q value = 0.16

Table S1484. Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ALDH3A1 MUTATED	3	2	4	1
ALDH3A1 WILD-TYPE	30	76	47	86

'ALDH3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.15

Table S1485. Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ALDH3A1 MUTATED	6	1	1	2	0
ALDH3A1 WILD-TYPE	59	58	41	32	57

'ALDH3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00096 (Fisher's exact test), Q value = 0.013

Table S1486. Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ALDH3A1 MUTATED	2	0	0	2	1	0	5
ALDH3A1 WILD-TYPE	34	21	48	54	38	37	15

Figure S778. Get High-res Image Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.053

Table S1487. Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ALDH3A1 MUTATED	9	1	0
ALDH3A1 WILD-TYPE	117	95	67

Figure S779. Get High-res Image Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.21

Table S1488. Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ALDH3A1 MUTATED	4	5	0	1
ALDH3A1 WILD-TYPE	52	100	60	67

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0486 (Fisher's exact test), Q value = 0.13

Table S1489. Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ALDH3A1 MUTATED	0	2	1	3	0	0
ALDH3A1 WILD-TYPE	34	16	58	35	19	43

Figure S780. Get High-res Image Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 0.2

Table S1490. Gene #149: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ALDH3A1 MUTATED	3	0	3
ALDH3A1 WILD-TYPE	119	51	35

'GCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.087

Table S1491. Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GCC2 MUTATED	0	7	0	1	2
GCC2 WILD-TYPE	79	119	27	42	10

Figure S781. Get High-res Image Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.12

Table S1492. Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GCC2 MUTATED	0	2	3	1
GCC2 WILD-TYPE	71	74	31	62

Figure S782. Get High-res Image Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.12

Table S1493. Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GCC2 MUTATED	7	1	2
GCC2 WILD-TYPE	71	85	83

Figure S783. Get High-res Image Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00296 (Fisher's exact test), Q value = 0.026

Table S1494. Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GCC2 MUTATED	4	2	4	0
GCC2 WILD-TYPE	29	76	47	87

Figure S784. Get High-res Image Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0045

Table S1495. Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GCC2 MUTATED	9	0	0	1	0
GCC2 WILD-TYPE	56	59	42	33	57

Figure S785. Get High-res Image Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00367 (Fisher's exact test), Q value = 0.029

Table S1496. Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GCC2 MUTATED	3	1	0	1	1	0	4
GCC2 WILD-TYPE	33	20	48	55	38	37	16

Figure S786. Get High-res Image Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00818 (Fisher's exact test), Q value = 0.046

Table S1497. Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GCC2 MUTATED	9	0	1
GCC2 WILD-TYPE	117	96	66

Figure S787. Get High-res Image Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00341 (Fisher's exact test), Q value = 0.027

Table S1498. Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GCC2 MUTATED	6	4	0	0
GCC2 WILD-TYPE	50	101	60	68

Figure S788. Get High-res Image Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 0.93

Table S1499. Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GCC2 MUTATED	1	0	2	1	0	0
GCC2 WILD-TYPE	33	18	57	37	19	43

'GCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.49

Table S1500. Gene #150: 'GCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GCC2 MUTATED	4	0	0
GCC2 WILD-TYPE	118	51	38

'NOX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.11

Table S1501. Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NOX5 MUTATED	1	10	0	1	2
NOX5 WILD-TYPE	78	116	27	42	10

Figure S789. Get High-res Image Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.26

Table S1502. Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NOX5 MUTATED	1	7	1	2
NOX5 WILD-TYPE	70	69	33	61

'NOX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.59

Table S1503. Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NOX5 MUTATED	6	3	4
NOX5 WILD-TYPE	72	83	81

'NOX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.48

Table S1504. Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NOX5 MUTATED	2	3	5	3
NOX5 WILD-TYPE	31	75	46	84

'NOX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.46

Table S1505. Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NOX5 MUTATED	6	2	1	2	1
NOX5 WILD-TYPE	59	57	41	32	56

'NOX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.62

Table S1506. Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NOX5 MUTATED	2	0	2	4	2	0	2
NOX5 WILD-TYPE	34	21	46	52	37	37	18

'NOX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00563 (Fisher's exact test), Q value = 0.036

Table S1507. Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NOX5 MUTATED	12	1	1
NOX5 WILD-TYPE	114	95	66

Figure S790. Get High-res Image Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00125 (Fisher's exact test), Q value = 0.015

Table S1508. Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NOX5 MUTATED	9	3	1	1
NOX5 WILD-TYPE	47	102	59	67

Figure S791. Get High-res Image Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NOX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.38

Table S1509. Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NOX5 MUTATED	2	3	3	1	0	1
NOX5 WILD-TYPE	32	15	56	37	19	42

'NOX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.12

Table S1510. Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NOX5 MUTATED	4	1	5
NOX5 WILD-TYPE	118	50	33

Figure S792. Get High-res Image Gene #151: 'NOX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.42

Table S1511. Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIF13A MUTATED	2	12	2	2	1
KIF13A WILD-TYPE	77	114	25	41	11

'KIF13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.15

Table S1512. Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIF13A MUTATED	2	7	4	1
KIF13A WILD-TYPE	69	69	30	62

'KIF13A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.069

Table S1513. Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIF13A MUTATED	11	2	6
KIF13A WILD-TYPE	67	84	79

Figure S793. Get High-res Image Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIF13A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.083

Table S1514. Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIF13A MUTATED	3	4	9	3
KIF13A WILD-TYPE	30	74	42	84

Figure S794. Get High-res Image Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.005

Table S1515. Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIF13A MUTATED	13	1	0	3	2
KIF13A WILD-TYPE	52	58	42	31	55

Figure S795. Get High-res Image Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIF13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.051

Table S1516. Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIF13A MUTATED	6	1	0	3	4	1	4
KIF13A WILD-TYPE	30	20	48	53	35	36	16

Figure S796. Get High-res Image Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00326 (Fisher's exact test), Q value = 0.027

Table S1517. Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIF13A MUTATED	16	3	1
KIF13A WILD-TYPE	110	93	66

Figure S797. Get High-res Image Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.002 (Fisher's exact test), Q value = 0.02

Table S1518. Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIF13A MUTATED	11	5	2	2
KIF13A WILD-TYPE	45	100	58	66

Figure S798. Get High-res Image Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.7

Table S1519. Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIF13A MUTATED	3	2	4	1	0	2
KIF13A WILD-TYPE	31	16	55	37	19	41

'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.34

Table S1520. Gene #152: 'KIF13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIF13A MUTATED	7	1	4
KIF13A WILD-TYPE	115	50	34

'CR1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.34

Table S1521. Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CR1L MUTATED	1	8	0	1	1
CR1L WILD-TYPE	78	118	27	42	11

'CR1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.47

Table S1522. Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CR1L MUTATED	1	5	2	2
CR1L WILD-TYPE	70	71	32	61

'CR1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.072

Table S1523. Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CR1L MUTATED	6	0	3
CR1L WILD-TYPE	72	86	82

Figure S799. Get High-res Image Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CR1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S1524. Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CR1L MUTATED	3	3	2	1
CR1L WILD-TYPE	30	75	49	86

'CR1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.74

Table S1525. Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CR1L MUTATED	4	1	3	1	2
CR1L WILD-TYPE	61	58	39	33	55

'CR1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.087

Table S1526. Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CR1L MUTATED	5	0	0	4	2	0	0
CR1L WILD-TYPE	31	21	48	52	37	37	20

Figure S800. Get High-res Image Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CR1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 0.13

Table S1527. Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CR1L MUTATED	9	1	1
CR1L WILD-TYPE	117	95	66

Figure S801. Get High-res Image Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CR1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 0.6

Table S1528. Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CR1L MUTATED	4	4	1	2
CR1L WILD-TYPE	52	101	59	66

'CR1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.29

Table S1529. Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CR1L MUTATED	1	0	6	0	0	1
CR1L WILD-TYPE	33	18	53	38	19	42

'CR1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.77

Table S1530. Gene #153: 'CR1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CR1L MUTATED	5	1	2
CR1L WILD-TYPE	117	50	36

'GALNTL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.36

Table S1531. Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GALNTL1 MUTATED	1	8	1	0	0
GALNTL1 WILD-TYPE	78	118	26	43	12

'GALNTL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.7

Table S1532. Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GALNTL1 MUTATED	1	4	1	3
GALNTL1 WILD-TYPE	70	72	33	60

'GALNTL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S1533. Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GALNTL1 MUTATED	6	3	1
GALNTL1 WILD-TYPE	72	83	84

'GALNTL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 0.18

Table S1534. Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GALNTL1 MUTATED	0	1	5	4
GALNTL1 WILD-TYPE	33	77	46	83

'GALNTL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 0.85

Table S1535. Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GALNTL1 MUTATED	2	2	0	0	1
GALNTL1 WILD-TYPE	63	57	42	34	56

'GALNTL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 0.9

Table S1536. Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GALNTL1 MUTATED	1	0	1	1	0	1	1
GALNTL1 WILD-TYPE	35	21	47	55	39	36	19

'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.56

Table S1537. Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GALNTL1 MUTATED	4	5	1
GALNTL1 WILD-TYPE	122	91	66

'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.64

Table S1538. Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GALNTL1 MUTATED	3	3	3	1
GALNTL1 WILD-TYPE	53	102	57	67

'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S1539. Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GALNTL1 MUTATED	1	0	2	2	1	2
GALNTL1 WILD-TYPE	33	18	57	36	18	41

'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.69

Table S1540. Gene #154: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GALNTL1 MUTATED	4	3	1
GALNTL1 WILD-TYPE	118	48	37

'SCLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S1541. Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SCLT1 MUTATED	1	11	1	3	0
SCLT1 WILD-TYPE	78	115	26	40	12

'SCLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 0.19

Table S1542. Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SCLT1 MUTATED	2	7	0	1
SCLT1 WILD-TYPE	69	69	34	62

'SCLT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00242 (Fisher's exact test), Q value = 0.022

Table S1543. Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SCLT1 MUTATED	11	2	2
SCLT1 WILD-TYPE	67	84	83

Figure S802. Get High-res Image Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SCLT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0275 (Fisher's exact test), Q value = 0.093

Table S1544. Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SCLT1 MUTATED	1	3	8	3
SCLT1 WILD-TYPE	32	75	43	84

Figure S803. Get High-res Image Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.1

Table S1545. Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SCLT1 MUTATED	7	1	4	0	1
SCLT1 WILD-TYPE	58	58	38	34	56

Figure S804. Get High-res Image Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.034 (Fisher's exact test), Q value = 0.11

Table S1546. Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SCLT1 MUTATED	2	0	0	5	3	0	3
SCLT1 WILD-TYPE	34	21	48	51	36	37	17

Figure S805. Get High-res Image Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00569 (Fisher's exact test), Q value = 0.037

Table S1547. Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SCLT1 MUTATED	13	1	2
SCLT1 WILD-TYPE	113	95	65

Figure S806. Get High-res Image Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.012

Table S1548. Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SCLT1 MUTATED	10	3	2	1
SCLT1 WILD-TYPE	46	102	58	67

Figure S807. Get High-res Image Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0865 (Fisher's exact test), Q value = 0.19

Table S1549. Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SCLT1 MUTATED	0	2	2	3	0	0
SCLT1 WILD-TYPE	34	16	57	35	19	43

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.12

Table S1550. Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SCLT1 MUTATED	2	1	4
SCLT1 WILD-TYPE	120	50	34

Figure S808. Get High-res Image Gene #155: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0038

Table S1551. Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STAB1 MUTATED	0	21	1	3	2
STAB1 WILD-TYPE	79	105	26	40	10

Figure S809. Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'STAB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S1552. Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STAB1 MUTATED	0	17	3	3
STAB1 WILD-TYPE	71	59	31	60

Figure S810. Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STAB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.012

Table S1553. Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
STAB1 MUTATED	13	1	9
STAB1 WILD-TYPE	65	85	76

Figure S811. Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'STAB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1554. Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
STAB1 MUTATED	3	3	15	2
STAB1 WILD-TYPE	30	75	36	85

Figure S812. Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0031

Table S1555. Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
STAB1 MUTATED	16	3	3	1	1
STAB1 WILD-TYPE	49	56	39	33	56

Figure S813. Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1556. Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
STAB1 MUTATED	4	0	1	4	5	0	10
STAB1 WILD-TYPE	32	21	47	52	34	37	10

Figure S814. Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.0088

Table S1557. Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
STAB1 MUTATED	22	3	3
STAB1 WILD-TYPE	104	93	64

Figure S815. Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'STAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S1558. Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
STAB1 MUTATED	16	8	2	2
STAB1 WILD-TYPE	40	97	58	66

Figure S816. Get High-res Image Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'STAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.65

Table S1559. Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
STAB1 MUTATED	3	2	6	6	0	3
STAB1 WILD-TYPE	31	16	53	32	19	40

'STAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.73

Table S1560. Gene #156: 'STAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
STAB1 MUTATED	13	3	4
STAB1 WILD-TYPE	109	48	34

'TP53BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.1

Table S1561. Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TP53BP1 MUTATED	0	11	1	3	1
TP53BP1 WILD-TYPE	79	115	26	40	11

Figure S817. Get High-res Image Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.12

Table S1562. Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TP53BP1 MUTATED	0	6	1	5
TP53BP1 WILD-TYPE	71	70	33	58

Figure S818. Get High-res Image Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S1563. Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TP53BP1 MUTATED	8	3	3
TP53BP1 WILD-TYPE	70	83	82

'TP53BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0701 (Fisher's exact test), Q value = 0.17

Table S1564. Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TP53BP1 MUTATED	4	3	5	2
TP53BP1 WILD-TYPE	29	75	46	85

'TP53BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0027

Table S1565. Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TP53BP1 MUTATED	11	1	0	3	0
TP53BP1 WILD-TYPE	54	58	42	31	57

Figure S819. Get High-res Image Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TP53BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.28

Table S1566. Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TP53BP1 MUTATED	5	1	1	5	2	0	1
TP53BP1 WILD-TYPE	31	20	47	51	37	37	19

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00799 (Fisher's exact test), Q value = 0.046

Table S1567. Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TP53BP1 MUTATED	13	2	1
TP53BP1 WILD-TYPE	113	94	66

Figure S820. Get High-res Image Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0201 (Fisher's exact test), Q value = 0.077

Table S1568. Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TP53BP1 MUTATED	6	8	2	0
TP53BP1 WILD-TYPE	50	97	58	68

Figure S821. Get High-res Image Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.39

Table S1569. Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TP53BP1 MUTATED	1	1	6	0	0	2
TP53BP1 WILD-TYPE	33	17	53	38	19	41

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.55

Table S1570. Gene #157: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TP53BP1 MUTATED	6	1	3
TP53BP1 WILD-TYPE	116	50	35

'IFRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.22

Table S1571. Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IFRD1 MUTATED	0	7	1	0	0
IFRD1 WILD-TYPE	79	119	26	43	12

'IFRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.056

Table S1572. Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IFRD1 MUTATED	0	3	3	0
IFRD1 WILD-TYPE	71	73	31	63

Figure S822. Get High-res Image Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IFRD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.09

Table S1573. Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IFRD1 MUTATED	5	0	2
IFRD1 WILD-TYPE	73	86	83

Figure S823. Get High-res Image Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IFRD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 0.53

Table S1574. Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IFRD1 MUTATED	1	2	3	1
IFRD1 WILD-TYPE	32	76	48	86

'IFRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.28

Table S1575. Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IFRD1 MUTATED	5	1	1	1	0
IFRD1 WILD-TYPE	60	58	41	33	57

'IFRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.25

Table S1576. Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IFRD1 MUTATED	2	1	0	1	2	0	2
IFRD1 WILD-TYPE	34	20	48	55	37	37	18

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00477 (Fisher's exact test), Q value = 0.033

Table S1577. Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IFRD1 MUTATED	8	0	0
IFRD1 WILD-TYPE	118	96	67

Figure S824. Get High-res Image Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.11

Table S1578. Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IFRD1 MUTATED	4	4	0	0
IFRD1 WILD-TYPE	52	101	60	68

Figure S825. Get High-res Image Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.5

Table S1579. Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IFRD1 MUTATED	0	1	3	2	0	0
IFRD1 WILD-TYPE	34	17	56	36	19	43

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S1580. Gene #158: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IFRD1 MUTATED	4	0	2
IFRD1 WILD-TYPE	118	51	36

'SF3B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.053

Table S1581. Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SF3B2 MUTATED	1	14	2	0	0
SF3B2 WILD-TYPE	78	112	25	43	12

Figure S826. Get High-res Image Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SF3B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S1582. Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SF3B2 MUTATED	1	8	2	3
SF3B2 WILD-TYPE	70	68	32	60

'SF3B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.2

Table S1583. Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SF3B2 MUTATED	8	2	4
SF3B2 WILD-TYPE	70	84	81

'SF3B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.33

Table S1584. Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SF3B2 MUTATED	2	3	6	3
SF3B2 WILD-TYPE	31	75	45	84

'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00133 (Fisher's exact test), Q value = 0.015

Table S1585. Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SF3B2 MUTATED	10	1	1	2	0
SF3B2 WILD-TYPE	55	58	41	32	57

Figure S827. Get High-res Image Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0063 (Fisher's exact test), Q value = 0.039

Table S1586. Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SF3B2 MUTATED	4	0	0	3	3	0	4
SF3B2 WILD-TYPE	32	21	48	53	36	37	16

Figure S828. Get High-res Image Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.087

Table S1587. Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SF3B2 MUTATED	13	3	1
SF3B2 WILD-TYPE	113	93	66

Figure S829. Get High-res Image Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.092

Table S1588. Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SF3B2 MUTATED	8	6	2	1
SF3B2 WILD-TYPE	48	99	58	67

Figure S830. Get High-res Image Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.46

Table S1589. Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SF3B2 MUTATED	1	1	7	3	0	1
SF3B2 WILD-TYPE	33	17	52	35	19	42

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S1590. Gene #159: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SF3B2 MUTATED	7	1	5
SF3B2 WILD-TYPE	115	50	33

'FAM151A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.12

Table S1591. Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM151A MUTATED	0	6	2	0	1
FAM151A WILD-TYPE	79	120	25	43	11

Figure S831. Get High-res Image Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM151A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 0.14

Table S1592. Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM151A MUTATED	0	5	0	1
FAM151A WILD-TYPE	71	71	34	62

'FAM151A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S1593. Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FAM151A MUTATED	4	2	2
FAM151A WILD-TYPE	74	84	83

'FAM151A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.3

Table S1594. Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FAM151A MUTATED	1	2	4	1
FAM151A WILD-TYPE	32	76	47	86

'FAM151A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.1

Table S1595. Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FAM151A MUTATED	5	0	2	2	0
FAM151A WILD-TYPE	60	59	40	32	57

Figure S832. Get High-res Image Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM151A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 0.13

Table S1596. Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FAM151A MUTATED	0	0	1	2	3	0	3
FAM151A WILD-TYPE	36	21	47	54	36	37	17

Figure S833. Get High-res Image Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM151A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.063

Table S1597. Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FAM151A MUTATED	8	0	1
FAM151A WILD-TYPE	118	96	66

Figure S834. Get High-res Image Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM151A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0493 (Fisher's exact test), Q value = 0.13

Table S1598. Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FAM151A MUTATED	5	3	0	1
FAM151A WILD-TYPE	51	102	60	67

Figure S835. Get High-res Image Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM151A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S1599. Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FAM151A MUTATED	0	1	3	1	0	0
FAM151A WILD-TYPE	34	17	56	37	19	43

'FAM151A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 0.12

Table S1600. Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FAM151A MUTATED	1	1	3
FAM151A WILD-TYPE	121	50	35

Figure S836. Get High-res Image Gene #160: 'FAM151A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FHDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00295 (Fisher's exact test), Q value = 0.026

Table S1601. Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FHDC1 MUTATED	0	13	1	0	1
FHDC1 WILD-TYPE	79	113	26	43	11

Figure S837. Get High-res Image Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FHDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.061

Table S1602. Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FHDC1 MUTATED	0	6	3	1
FHDC1 WILD-TYPE	71	70	31	62

Figure S838. Get High-res Image Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FHDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.1

Table S1603. Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FHDC1 MUTATED	9	3	2
FHDC1 WILD-TYPE	69	83	83

Figure S839. Get High-res Image Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FHDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.48

Table S1604. Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FHDC1 MUTATED	4	3	3	4
FHDC1 WILD-TYPE	29	75	48	83

'FHDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.095

Table S1605. Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FHDC1 MUTATED	8	2	2	3	0
FHDC1 WILD-TYPE	57	57	40	31	57

Figure S840. Get High-res Image Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FHDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00467 (Fisher's exact test), Q value = 0.032

Table S1606. Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FHDC1 MUTATED	3	1	0	4	2	0	5
FHDC1 WILD-TYPE	33	20	48	52	37	37	15

Figure S841. Get High-res Image Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.071

Table S1607. Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FHDC1 MUTATED	11	4	0
FHDC1 WILD-TYPE	115	92	67

Figure S842. Get High-res Image Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.41

Table S1608. Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FHDC1 MUTATED	4	8	1	2
FHDC1 WILD-TYPE	52	97	59	66

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.14

Table S1609. Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FHDC1 MUTATED	0	2	2	4	1	0
FHDC1 WILD-TYPE	34	16	57	34	18	43

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S1610. Gene #161: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FHDC1 MUTATED	6	0	3
FHDC1 WILD-TYPE	116	51	35

'FAM46D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.54

Table S1611. Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM46D MUTATED	3	4	1	0	1
FAM46D WILD-TYPE	76	122	26	43	11

'FAM46D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.5

Table S1612. Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM46D MUTATED	1	4	0	3
FAM46D WILD-TYPE	70	72	34	60

'FAM46D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S1613. Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FAM46D MUTATED	4	2	2
FAM46D WILD-TYPE	74	84	83

'FAM46D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.27

Table S1614. Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FAM46D MUTATED	3	3	1	1
FAM46D WILD-TYPE	30	75	50	86

'FAM46D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.5

Table S1615. Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FAM46D MUTATED	2	2	0	3	2
FAM46D WILD-TYPE	63	57	42	31	55

'FAM46D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.4

Table S1616. Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FAM46D MUTATED	1	0	3	0	3	2	0
FAM46D WILD-TYPE	35	21	45	56	36	35	20

'FAM46D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 0.95

Table S1617. Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FAM46D MUTATED	5	2	2
FAM46D WILD-TYPE	121	94	65

'FAM46D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1618. Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FAM46D MUTATED	2	3	2	2
FAM46D WILD-TYPE	54	102	58	66

'FAM46D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.45

Table S1619. Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FAM46D MUTATED	2	2	2	0	0	2
FAM46D WILD-TYPE	32	16	57	38	19	41

'FAM46D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 0.57

Table S1620. Gene #162: 'FAM46D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FAM46D MUTATED	3	3	2
FAM46D WILD-TYPE	119	48	36

'TLE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00714 (Fisher's exact test), Q value = 0.042

Table S1621. Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TLE2 MUTATED	1	13	2	0	2
TLE2 WILD-TYPE	78	113	25	43	10

Figure S843. Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TLE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0038

Table S1622. Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TLE2 MUTATED	1	12	3	0
TLE2 WILD-TYPE	70	64	31	63

Figure S844. Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TLE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.086

Table S1623. Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TLE2 MUTATED	10	2	4
TLE2 WILD-TYPE	68	84	81

Figure S845. Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TLE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00641 (Fisher's exact test), Q value = 0.039

Table S1624. Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TLE2 MUTATED	2	2	9	3
TLE2 WILD-TYPE	31	76	42	84

Figure S846. Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TLE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0029

Table S1625. Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TLE2 MUTATED	11	1	0	4	0
TLE2 WILD-TYPE	54	58	42	30	57

Figure S847. Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TLE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0041

Table S1626. Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TLE2 MUTATED	2	0	0	3	5	0	6
TLE2 WILD-TYPE	34	21	48	53	34	37	14

Figure S848. Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TLE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.21

Table S1627. Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TLE2 MUTATED	13	4	2
TLE2 WILD-TYPE	113	92	65

'TLE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S1628. Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TLE2 MUTATED	12	4	3	0
TLE2 WILD-TYPE	44	101	57	68

Figure S849. Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TLE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.44

Table S1629. Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TLE2 MUTATED	3	3	4	3	0	1
TLE2 WILD-TYPE	31	15	55	35	19	42

'TLE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00872 (Fisher's exact test), Q value = 0.048

Table S1630. Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TLE2 MUTATED	6	1	7
TLE2 WILD-TYPE	116	50	31

Figure S850. Get High-res Image Gene #163: 'TLE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HOXD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.37

Table S1631. Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HOXD8 MUTATED	0	6	0	1	0
HOXD8 WILD-TYPE	79	120	27	42	12

'HOXD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.47

Table S1632. Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HOXD8 MUTATED	0	3	1	1
HOXD8 WILD-TYPE	71	73	33	62

'HOXD8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.091

Table S1633. Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HOXD8 MUTATED	5	0	2
HOXD8 WILD-TYPE	73	86	83

Figure S851. Get High-res Image Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HOXD8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.49

Table S1634. Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HOXD8 MUTATED	2	2	2	1
HOXD8 WILD-TYPE	31	76	49	86

'HOXD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.079

Table S1635. Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HOXD8 MUTATED	5	0	1	0	0
HOXD8 WILD-TYPE	60	59	41	34	57

Figure S852. Get High-res Image Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HOXD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0966 (Fisher's exact test), Q value = 0.2

Table S1636. Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HOXD8 MUTATED	3	0	0	2	0	0	1
HOXD8 WILD-TYPE	33	21	48	54	39	37	19

'HOXD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00953 (Fisher's exact test), Q value = 0.05

Table S1637. Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HOXD8 MUTATED	7	0	0
HOXD8 WILD-TYPE	119	96	67

Figure S853. Get High-res Image Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HOXD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0951 (Fisher's exact test), Q value = 0.2

Table S1638. Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HOXD8 MUTATED	4	2	0	1
HOXD8 WILD-TYPE	52	103	60	67

'HOXD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.42

Table S1639. Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HOXD8 MUTATED	0	0	4	1	0	0
HOXD8 WILD-TYPE	34	18	55	37	19	43

'HOXD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.57

Table S1640. Gene #164: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HOXD8 MUTATED	4	0	1
HOXD8 WILD-TYPE	118	51	37

'ZIM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.65

Table S1641. Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZIM3 MUTATED	1	7	1	1	0
ZIM3 WILD-TYPE	78	119	26	42	12

'ZIM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.67

Table S1642. Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZIM3 MUTATED	1	2	0	3
ZIM3 WILD-TYPE	70	74	34	60

'ZIM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.67

Table S1643. Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZIM3 MUTATED	4	2	3
ZIM3 WILD-TYPE	74	84	82

'ZIM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.51

Table S1644. Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZIM3 MUTATED	2	1	3	3
ZIM3 WILD-TYPE	31	77	48	84

'ZIM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 0.95

Table S1645. Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZIM3 MUTATED	3	3	1	1	1
ZIM3 WILD-TYPE	62	56	41	33	56

'ZIM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.6

Table S1646. Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZIM3 MUTATED	3	0	1	3	1	0	1
ZIM3 WILD-TYPE	33	21	47	53	38	37	19

'ZIM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.46

Table S1647. Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZIM3 MUTATED	7	2	1
ZIM3 WILD-TYPE	119	94	66

'ZIM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.44

Table S1648. Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZIM3 MUTATED	3	5	0	2
ZIM3 WILD-TYPE	53	100	60	66

'ZIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.37

Table S1649. Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZIM3 MUTATED	1	0	4	0	1	0
ZIM3 WILD-TYPE	33	18	55	38	18	43

'ZIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.55

Table S1650. Gene #165: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZIM3 MUTATED	5	0	1
ZIM3 WILD-TYPE	117	51	37

'DDX60 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.076

Table S1651. Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DDX60 MUTATED	0	9	0	0	1
DDX60 WILD-TYPE	79	117	27	43	11

Figure S854. Get High-res Image Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX60 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.074 (Fisher's exact test), Q value = 0.17

Table S1652. Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DDX60 MUTATED	0	5	0	2
DDX60 WILD-TYPE	71	71	34	61

'DDX60 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.063

Table S1653. Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DDX60 MUTATED	7	1	1
DDX60 WILD-TYPE	71	85	84

Figure S855. Get High-res Image Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DDX60 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.61

Table S1654. Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DDX60 MUTATED	2	2	3	2
DDX60 WILD-TYPE	31	76	48	85

'DDX60 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 0.2

Table S1655. Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DDX60 MUTATED	5	1	1	0	0
DDX60 WILD-TYPE	60	58	41	34	57

'DDX60 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S1656. Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DDX60 MUTATED	3	0	0	2	1	0	1
DDX60 WILD-TYPE	33	21	48	54	38	37	19

'DDX60 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.14

Table S1657. Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DDX60 MUTATED	8	2	0
DDX60 WILD-TYPE	118	94	67

'DDX60 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.12

Table S1658. Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DDX60 MUTATED	5	4	1	0
DDX60 WILD-TYPE	51	101	59	68

Figure S856. Get High-res Image Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDX60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.8

Table S1659. Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DDX60 MUTATED	1	0	3	1	0	0
DDX60 WILD-TYPE	33	18	56	37	19	43

'DDX60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 0.88

Table S1660. Gene #166: 'DDX60 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DDX60 MUTATED	4	1	0
DDX60 WILD-TYPE	118	50	38

'BEND3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.51

Table S1661. Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BEND3 MUTATED	2	8	0	1	1
BEND3 WILD-TYPE	77	118	27	42	11

'BEND3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.25

Table S1662. Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BEND3 MUTATED	0	5	1	3
BEND3 WILD-TYPE	71	71	33	60

'BEND3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.54

Table S1663. Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BEND3 MUTATED	5	2	4
BEND3 WILD-TYPE	73	84	81

'BEND3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.55

Table S1664. Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BEND3 MUTATED	2	2	4	3
BEND3 WILD-TYPE	31	76	47	84

'BEND3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00818 (Fisher's exact test), Q value = 0.046

Table S1665. Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BEND3 MUTATED	7	1	0	2	0
BEND3 WILD-TYPE	58	58	42	32	57

Figure S857. Get High-res Image Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BEND3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.16

Table S1666. Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BEND3 MUTATED	4	0	0	2	3	0	1
BEND3 WILD-TYPE	32	21	48	54	36	37	19

'BEND3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00209 (Fisher's exact test), Q value = 0.021

Table S1667. Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BEND3 MUTATED	11	1	0
BEND3 WILD-TYPE	115	95	67

Figure S858. Get High-res Image Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BEND3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00452 (Fisher's exact test), Q value = 0.032

Table S1668. Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BEND3 MUTATED	7	4	1	0
BEND3 WILD-TYPE	49	101	59	68

Figure S859. Get High-res Image Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BEND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S1669. Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BEND3 MUTATED	1	0	6	2	0	0
BEND3 WILD-TYPE	33	18	53	36	19	43

'BEND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S1670. Gene #167: 'BEND3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BEND3 MUTATED	4	1	4
BEND3 WILD-TYPE	118	50	34

'EIF4G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.27

Table S1671. Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EIF4G3 MUTATED	2	10	2	0	0
EIF4G3 WILD-TYPE	77	116	25	43	12

'EIF4G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00639 (Fisher's exact test), Q value = 0.039

Table S1672. Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EIF4G3 MUTATED	2	9	3	0
EIF4G3 WILD-TYPE	69	67	31	63

Figure S860. Get High-res Image Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EIF4G3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S1673. Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EIF4G3 MUTATED	10	0	1
EIF4G3 WILD-TYPE	68	86	84

Figure S861. Get High-res Image Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EIF4G3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S1674. Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EIF4G3 MUTATED	2	1	5	3
EIF4G3 WILD-TYPE	31	77	46	84

'EIF4G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.0072

Table S1675. Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EIF4G3 MUTATED	10	0	0	1	2
EIF4G3 WILD-TYPE	55	59	42	33	55

Figure S862. Get High-res Image Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EIF4G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.066

Table S1676. Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EIF4G3 MUTATED	2	1	0	2	5	0	3
EIF4G3 WILD-TYPE	34	20	48	54	34	37	17

Figure S863. Get High-res Image Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.06

Table S1677. Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EIF4G3 MUTATED	12	2	1
EIF4G3 WILD-TYPE	114	94	66

Figure S864. Get High-res Image Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00547 (Fisher's exact test), Q value = 0.036

Table S1678. Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EIF4G3 MUTATED	8	5	0	2
EIF4G3 WILD-TYPE	48	100	60	66

Figure S865. Get High-res Image Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.54

Table S1679. Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EIF4G3 MUTATED	4	1	4	4	0	1
EIF4G3 WILD-TYPE	30	17	55	34	19	42

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.086

Table S1680. Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EIF4G3 MUTATED	9	0	5
EIF4G3 WILD-TYPE	113	51	33

Figure S866. Get High-res Image Gene #168: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.26

Table S1681. Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MFRP MUTATED	0	8	1	2	0
MFRP WILD-TYPE	79	118	26	41	12

'MFRP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0012 (Fisher's exact test), Q value = 0.014

Table S1682. Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MFRP MUTATED	0	8	2	0
MFRP WILD-TYPE	71	68	32	63

Figure S867. Get High-res Image Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MFRP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00402 (Fisher's exact test), Q value = 0.03

Table S1683. Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MFRP MUTATED	8	1	1
MFRP WILD-TYPE	70	85	84

Figure S868. Get High-res Image Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MFRP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.092

Table S1684. Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MFRP MUTATED	1	2	6	1
MFRP WILD-TYPE	32	76	45	86

Figure S869. Get High-res Image Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.088

Table S1685. Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MFRP MUTATED	7	0	1	1	1
MFRP WILD-TYPE	58	59	41	33	56

Figure S870. Get High-res Image Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MFRP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00837 (Fisher's exact test), Q value = 0.047

Table S1686. Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MFRP MUTATED	0	1	0	2	4	0	3
MFRP WILD-TYPE	36	20	48	54	35	37	17

Figure S871. Get High-res Image Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S1687. Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MFRP MUTATED	9	2	0
MFRP WILD-TYPE	117	94	67

Figure S872. Get High-res Image Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MFRP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00371 (Fisher's exact test), Q value = 0.029

Table S1688. Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MFRP MUTATED	7	3	0	1
MFRP WILD-TYPE	49	102	60	67

Figure S873. Get High-res Image Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.35

Table S1689. Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MFRP MUTATED	2	1	1	3	0	0
MFRP WILD-TYPE	32	17	58	35	19	43

'MFRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.11

Table S1690. Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MFRP MUTATED	3	0	4
MFRP WILD-TYPE	119	51	34

Figure S874. Get High-res Image Gene #169: 'MFRP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00594 (Fisher's exact test), Q value = 0.038

Table S1691. Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EIF5B MUTATED	0	15	1	2	0
EIF5B WILD-TYPE	79	111	26	41	12

Figure S875. Get High-res Image Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EIF5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.06

Table S1692. Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EIF5B MUTATED	1	9	3	1
EIF5B WILD-TYPE	70	67	31	62

Figure S876. Get High-res Image Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EIF5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.0064

Table S1693. Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EIF5B MUTATED	13	1	3
EIF5B WILD-TYPE	65	85	82

Figure S877. Get High-res Image Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EIF5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S1694. Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EIF5B MUTATED	3	2	11	1
EIF5B WILD-TYPE	30	76	40	86

Figure S878. Get High-res Image Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00645 (Fisher's exact test), Q value = 0.039

Table S1695. Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EIF5B MUTATED	9	1	3	2	0
EIF5B WILD-TYPE	56	58	39	32	57

Figure S879. Get High-res Image Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00383 (Fisher's exact test), Q value = 0.029

Table S1696. Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EIF5B MUTATED	3	1	0	3	3	0	5
EIF5B WILD-TYPE	33	20	48	53	36	37	15

Figure S880. Get High-res Image Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0058

Table S1697. Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EIF5B MUTATED	16	1	1
EIF5B WILD-TYPE	110	95	66

Figure S881. Get High-res Image Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00074 (Fisher's exact test), Q value = 0.011

Table S1698. Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EIF5B MUTATED	9	8	1	0
EIF5B WILD-TYPE	47	97	59	68

Figure S882. Get High-res Image Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.32

Table S1699. Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EIF5B MUTATED	3	1	6	3	0	0
EIF5B WILD-TYPE	31	17	53	35	19	43

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.21

Table S1700. Gene #170: 'EIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EIF5B MUTATED	7	1	5
EIF5B WILD-TYPE	115	50	33

'FANCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S1701. Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FANCE MUTATED	0	6	0	0	0
FANCE WILD-TYPE	79	120	27	43	12

'FANCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.47

Table S1702. Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FANCE MUTATED	0	3	1	1
FANCE WILD-TYPE	71	73	33	62

'FANCE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00301 (Fisher's exact test), Q value = 0.026

Table S1703. Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FANCE MUTATED	5	0	0
FANCE WILD-TYPE	73	86	85

Figure S883. Get High-res Image Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FANCE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00259 (Fisher's exact test), Q value = 0.023

Table S1704. Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FANCE MUTATED	3	0	2	0
FANCE WILD-TYPE	30	78	49	87

Figure S884. Get High-res Image Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FANCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.12

Table S1705. Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FANCE MUTATED	4	0	0	1	0
FANCE WILD-TYPE	61	59	42	33	57

Figure S885. Get High-res Image Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FANCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S1706. Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FANCE MUTATED	1	0	0	1	1	0	2
FANCE WILD-TYPE	35	21	48	55	38	37	18

'FANCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.053

Table S1707. Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FANCE MUTATED	7	0	0
FANCE WILD-TYPE	119	96	67

Figure S886. Get High-res Image Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FANCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0919 (Fisher's exact test), Q value = 0.2

Table S1708. Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FANCE MUTATED	3	4	0	0
FANCE WILD-TYPE	53	101	60	68

'FANCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.77

Table S1709. Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FANCE MUTATED	1	1	2	1	0	0
FANCE WILD-TYPE	33	17	57	37	19	43

'FANCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.41

Table S1710. Gene #171: 'FANCE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FANCE MUTATED	3	0	2
FANCE WILD-TYPE	119	51	36

'PALB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.33

Table S1711. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PALB2 MUTATED	0	7	1	1	0
PALB2 WILD-TYPE	79	119	26	42	12

'PALB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 0.17

Table S1712. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PALB2 MUTATED	0	4	3	2
PALB2 WILD-TYPE	71	72	31	61

'PALB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.065

Table S1713. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PALB2 MUTATED	7	1	1
PALB2 WILD-TYPE	71	85	84

Figure S887. Get High-res Image Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PALB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.094

Table S1714. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PALB2 MUTATED	3	1	4	1
PALB2 WILD-TYPE	30	77	47	86

Figure S888. Get High-res Image Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PALB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.0095

Table S1715. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PALB2 MUTATED	7	0	0	0	0
PALB2 WILD-TYPE	58	59	42	34	57

Figure S889. Get High-res Image Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PALB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.0078

Table S1716. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PALB2 MUTATED	2	0	0	0	1	0	4
PALB2 WILD-TYPE	34	21	48	56	38	37	16

Figure S890. Get High-res Image Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PALB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.23

Table S1717. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PALB2 MUTATED	7	2	0
PALB2 WILD-TYPE	119	94	67

'PALB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.21

Table S1718. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PALB2 MUTATED	4	4	1	0
PALB2 WILD-TYPE	52	101	59	68

'PALB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 0.87

Table S1719. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PALB2 MUTATED	1	0	4	2	0	1
PALB2 WILD-TYPE	33	18	55	36	19	42

'PALB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.77

Table S1720. Gene #172: 'PALB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PALB2 MUTATED	5	1	2
PALB2 WILD-TYPE	117	50	36

'ISG20L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.22

Table S1721. Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ISG20L2 MUTATED	0	7	0	0	0
ISG20L2 WILD-TYPE	79	119	27	43	12

'ISG20L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.61

Table S1722. Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ISG20L2 MUTATED	1	4	1	1
ISG20L2 WILD-TYPE	70	72	33	62

'ISG20L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.16

Table S1723. Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ISG20L2 MUTATED	4	0	2
ISG20L2 WILD-TYPE	74	86	83

'ISG20L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.3

Table S1724. Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ISG20L2 MUTATED	1	3	2	0
ISG20L2 WILD-TYPE	32	75	49	87

'ISG20L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.12

Table S1725. Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ISG20L2 MUTATED	4	0	2	0	0
ISG20L2 WILD-TYPE	61	59	40	34	57

Figure S891. Get High-res Image Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ISG20L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.56

Table S1726. Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ISG20L2 MUTATED	1	0	0	3	1	0	1
ISG20L2 WILD-TYPE	35	21	48	53	38	37	19

'ISG20L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00962 (Fisher's exact test), Q value = 0.05

Table S1727. Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ISG20L2 MUTATED	7	0	0
ISG20L2 WILD-TYPE	119	96	67

Figure S892. Get High-res Image Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ISG20L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0895 (Fisher's exact test), Q value = 0.19

Table S1728. Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ISG20L2 MUTATED	3	4	0	0
ISG20L2 WILD-TYPE	53	101	60	68

'ISG20L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.67

Table S1729. Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ISG20L2 MUTATED	1	1	3	2	0	0
ISG20L2 WILD-TYPE	33	17	56	36	19	43

'ISG20L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.39

Table S1730. Gene #173: 'ISG20L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ISG20L2 MUTATED	5	0	2
ISG20L2 WILD-TYPE	117	51	36

'ITGA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.24

Table S1731. Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ITGA6 MUTATED	0	4	2	0	0
ITGA6 WILD-TYPE	79	122	25	43	12

'ITGA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.63

Table S1732. Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ITGA6 MUTATED	0	2	1	1
ITGA6 WILD-TYPE	71	74	33	62

'ITGA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00966 (Fisher's exact test), Q value = 0.05

Table S1733. Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ITGA6 MUTATED	5	0	1
ITGA6 WILD-TYPE	73	86	84

Figure S893. Get High-res Image Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ITGA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00063 (Fisher's exact test), Q value = 0.0097

Table S1734. Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ITGA6 MUTATED	1	0	5	0
ITGA6 WILD-TYPE	32	78	46	87

Figure S894. Get High-res Image Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ITGA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.065

Table S1735. Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ITGA6 MUTATED	5	0	0	1	0
ITGA6 WILD-TYPE	60	59	42	33	57

Figure S895. Get High-res Image Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ITGA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0365 (Fisher's exact test), Q value = 0.11

Table S1736. Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ITGA6 MUTATED	1	1	0	0	2	0	2
ITGA6 WILD-TYPE	35	20	48	56	37	37	18

Figure S896. Get High-res Image Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITGA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.25

Table S1737. Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ITGA6 MUTATED	4	0	2
ITGA6 WILD-TYPE	122	96	65

'ITGA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0292 (Fisher's exact test), Q value = 0.096

Table S1738. Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ITGA6 MUTATED	4	2	0	0
ITGA6 WILD-TYPE	52	103	60	68

Figure S897. Get High-res Image Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ITGA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.62

Table S1739. Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ITGA6 MUTATED	0	1	1	1	0	0
ITGA6 WILD-TYPE	34	17	58	37	19	43

'ITGA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S1740. Gene #174: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ITGA6 MUTATED	1	0	2
ITGA6 WILD-TYPE	121	51	36

'SDAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.37

Table S1741. Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SDAD1 MUTATED	0	6	0	1	0
SDAD1 WILD-TYPE	79	120	27	42	12

'SDAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.15

Table S1742. Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SDAD1 MUTATED	0	4	1	0
SDAD1 WILD-TYPE	71	72	33	63

'SDAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.39

Table S1743. Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SDAD1 MUTATED	4	1	2
SDAD1 WILD-TYPE	74	85	83

'SDAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0544 (Fisher's exact test), Q value = 0.14

Table S1744. Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SDAD1 MUTATED	1	0	4	2
SDAD1 WILD-TYPE	32	78	47	85

'SDAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.66

Table S1745. Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SDAD1 MUTATED	3	1	1	1	0
SDAD1 WILD-TYPE	62	58	41	33	57

'SDAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00135 (Fisher's exact test), Q value = 0.016

Table S1746. Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SDAD1 MUTATED	0	0	1	1	0	0	4
SDAD1 WILD-TYPE	36	21	47	55	39	37	16

Figure S898. Get High-res Image Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SDAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.41

Table S1747. Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SDAD1 MUTATED	5	2	0
SDAD1 WILD-TYPE	121	94	67

'SDAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0825 (Fisher's exact test), Q value = 0.18

Table S1748. Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SDAD1 MUTATED	4	2	1	0
SDAD1 WILD-TYPE	52	103	59	68

'SDAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.64

Table S1749. Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SDAD1 MUTATED	0	0	1	2	0	0
SDAD1 WILD-TYPE	34	18	58	36	19	43

'SDAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 0.82

Table S1750. Gene #175: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SDAD1 MUTATED	3	0	0
SDAD1 WILD-TYPE	119	51	38

'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.81

Table S1751. Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDKN2A MUTATED	3	6	0	3	0
CDKN2A WILD-TYPE	76	120	27	40	12

'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.7

Table S1752. Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDKN2A MUTATED	4	4	0	2
CDKN2A WILD-TYPE	67	72	34	61

'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S1753. Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CDKN2A MUTATED	3	1	4
CDKN2A WILD-TYPE	75	85	81

'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.68

Table S1754. Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CDKN2A MUTATED	0	4	2	2
CDKN2A WILD-TYPE	33	74	49	85

'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.61

Table S1755. Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CDKN2A MUTATED	5	1	1	2	2
CDKN2A WILD-TYPE	60	58	41	32	55

'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.816 (Fisher's exact test), Q value = 0.87

Table S1756. Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CDKN2A MUTATED	1	0	1	3	2	3	1
CDKN2A WILD-TYPE	35	21	47	53	37	34	19

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.16

Table S1757. Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CDKN2A MUTATED	9	1	2
CDKN2A WILD-TYPE	117	95	65

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.62

Table S1758. Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CDKN2A MUTATED	4	4	1	3
CDKN2A WILD-TYPE	52	101	59	65

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.2

Table S1759. Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CDKN2A MUTATED	1	3	1	3	0	1
CDKN2A WILD-TYPE	33	15	58	35	19	42

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S1760. Gene #176: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CDKN2A MUTATED	4	1	4
CDKN2A WILD-TYPE	118	50	34

'RTN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.092

Table S1761. Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RTN2 MUTATED	0	9	1	0	1
RTN2 WILD-TYPE	79	117	26	43	11

Figure S899. Get High-res Image Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RTN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.11

Table S1762. Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RTN2 MUTATED	0	6	1	1
RTN2 WILD-TYPE	71	70	33	62

Figure S900. Get High-res Image Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RTN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.22

Table S1763. Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RTN2 MUTATED	6	1	4
RTN2 WILD-TYPE	72	85	81

'RTN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.24

Table S1764. Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RTN2 MUTATED	2	2	5	2
RTN2 WILD-TYPE	31	76	46	85

'RTN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.12

Table S1765. Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RTN2 MUTATED	5	2	0	3	0
RTN2 WILD-TYPE	60	57	42	31	57

Figure S901. Get High-res Image Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RTN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.29

Table S1766. Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RTN2 MUTATED	2	0	1	2	2	0	3
RTN2 WILD-TYPE	34	21	47	54	37	37	17

'RTN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.13

Table S1767. Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RTN2 MUTATED	9	1	1
RTN2 WILD-TYPE	117	95	66

Figure S902. Get High-res Image Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RTN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.13

Table S1768. Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RTN2 MUTATED	5	5	0	1
RTN2 WILD-TYPE	51	100	60	67

Figure S903. Get High-res Image Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.21

Table S1769. Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RTN2 MUTATED	0	2	4	1	0	0
RTN2 WILD-TYPE	34	16	55	37	19	43

'RTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S1770. Gene #177: 'RTN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RTN2 MUTATED	4	0	3
RTN2 WILD-TYPE	118	51	35

'DNAJC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.091

Table S1771. Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DNAJC1 MUTATED	0	10	1	0	0
DNAJC1 WILD-TYPE	79	116	26	43	12

Figure S904. Get High-res Image Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAJC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.059

Table S1772. Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DNAJC1 MUTATED	0	7	2	1
DNAJC1 WILD-TYPE	71	69	32	62

Figure S905. Get High-res Image Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAJC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00387 (Fisher's exact test), Q value = 0.029

Table S1773. Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DNAJC1 MUTATED	7	0	2
DNAJC1 WILD-TYPE	71	86	83

Figure S906. Get High-res Image Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DNAJC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.24

Table S1774. Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DNAJC1 MUTATED	2	2	4	1
DNAJC1 WILD-TYPE	31	76	47	86

'DNAJC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00784 (Fisher's exact test), Q value = 0.045

Table S1775. Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DNAJC1 MUTATED	7	1	0	2	0
DNAJC1 WILD-TYPE	58	58	42	32	57

Figure S907. Get High-res Image Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DNAJC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.12

Table S1776. Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DNAJC1 MUTATED	2	0	0	2	3	0	3
DNAJC1 WILD-TYPE	34	21	48	54	36	37	17

Figure S908. Get High-res Image Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0699 (Fisher's exact test), Q value = 0.17

Table S1777. Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DNAJC1 MUTATED	8	3	0
DNAJC1 WILD-TYPE	118	93	67

'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 0.16

Table S1778. Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DNAJC1 MUTATED	5	4	2	0
DNAJC1 WILD-TYPE	51	101	58	68

'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 0.98

Table S1779. Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DNAJC1 MUTATED	1	1	4	2	0	2
DNAJC1 WILD-TYPE	33	17	55	36	19	41

'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S1780. Gene #178: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DNAJC1 MUTATED	5	2	3
DNAJC1 WILD-TYPE	117	49	35

'TP53RK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.55

Table S1781. Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TP53RK MUTATED	0	4	1	1	0
TP53RK WILD-TYPE	79	122	26	42	12

'TP53RK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.97

Table S1782. Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TP53RK MUTATED	1	2	1	1
TP53RK WILD-TYPE	70	74	33	62

'TP53RK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00259 (Fisher's exact test), Q value = 0.023

Table S1783. Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TP53RK MUTATED	5	0	0
TP53RK WILD-TYPE	73	86	85

Figure S909. Get High-res Image Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TP53RK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0588 (Fisher's exact test), Q value = 0.15

Table S1784. Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TP53RK MUTATED	1	1	3	0
TP53RK WILD-TYPE	32	77	48	87

'TP53RK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.54

Table S1785. Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TP53RK MUTATED	2	0	2	0	1
TP53RK WILD-TYPE	63	59	40	34	56

'TP53RK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.39

Table S1786. Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TP53RK MUTATED	0	0	0	3	2	0	0
TP53RK WILD-TYPE	36	21	48	53	37	37	20

'TP53RK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.29

Table S1787. Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TP53RK MUTATED	5	1	0
TP53RK WILD-TYPE	121	95	67

'TP53RK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 0.89

Table S1788. Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TP53RK MUTATED	2	2	1	1
TP53RK WILD-TYPE	54	103	59	67

'TP53RK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 0.83

Table S1789. Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TP53RK MUTATED	0	1	1	1	0	1
TP53RK WILD-TYPE	34	17	58	37	19	42

'TP53RK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S1790. Gene #179: 'TP53RK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TP53RK MUTATED	1	1	2
TP53RK WILD-TYPE	121	50	36

'CCDC108 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.021

Table S1791. Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC108 MUTATED	1	20	1	2	0
CCDC108 WILD-TYPE	78	106	26	41	12

Figure S910. Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC108 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00149 (Fisher's exact test), Q value = 0.017

Table S1792. Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CCDC108 MUTATED	1	13	3	2
CCDC108 WILD-TYPE	70	63	31	61

Figure S911. Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC108 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0047

Table S1793. Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CCDC108 MUTATED	12	0	8
CCDC108 WILD-TYPE	66	86	77

Figure S912. Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CCDC108 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00113 (Fisher's exact test), Q value = 0.014

Table S1794. Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CCDC108 MUTATED	3	6	10	1
CCDC108 WILD-TYPE	30	72	41	86

Figure S913. Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1795. Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CCDC108 MUTATED	16	0	3	4	0
CCDC108 WILD-TYPE	49	59	39	30	57

Figure S914. Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCDC108 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0031

Table S1796. Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CCDC108 MUTATED	2	1	0	7	6	0	7
CCDC108 WILD-TYPE	34	20	48	49	33	37	13

Figure S915. Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0024

Table S1797. Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CCDC108 MUTATED	21	1	3
CCDC108 WILD-TYPE	105	95	64

Figure S916. Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1798. Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CCDC108 MUTATED	17	6	0	2
CCDC108 WILD-TYPE	39	99	60	66

Figure S917. Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00343 (Fisher's exact test), Q value = 0.027

Table S1799. Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CCDC108 MUTATED	4	1	4	9	0	0
CCDC108 WILD-TYPE	30	17	55	29	19	43

Figure S918. Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00041 (Fisher's exact test), Q value = 0.0073

Table S1800. Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CCDC108 MUTATED	9	0	9
CCDC108 WILD-TYPE	113	51	29

Figure S919. Get High-res Image Gene #180: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PYGO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.37

Table S1801. Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PYGO2 MUTATED	0	6	0	1	0
PYGO2 WILD-TYPE	79	120	27	42	12

'PYGO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00948 (Fisher's exact test), Q value = 0.05

Table S1802. Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PYGO2 MUTATED	0	6	1	0
PYGO2 WILD-TYPE	71	70	33	63

Figure S920. Get High-res Image Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PYGO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.43

Table S1803. Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PYGO2 MUTATED	2	1	0
PYGO2 WILD-TYPE	76	85	85

'PYGO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0531 (Fisher's exact test), Q value = 0.14

Table S1804. Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PYGO2 MUTATED	1	0	2	0
PYGO2 WILD-TYPE	32	78	49	87

'PYGO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00414 (Fisher's exact test), Q value = 0.03

Table S1805. Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PYGO2 MUTATED	6	0	0	1	0
PYGO2 WILD-TYPE	59	59	42	33	57

Figure S921. Get High-res Image Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PYGO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0179 (Fisher's exact test), Q value = 0.072

Table S1806. Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PYGO2 MUTATED	0	0	0	2	2	0	3
PYGO2 WILD-TYPE	36	21	48	54	37	37	17

Figure S922. Get High-res Image Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PYGO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00969 (Fisher's exact test), Q value = 0.05

Table S1807. Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PYGO2 MUTATED	7	0	0
PYGO2 WILD-TYPE	119	96	67

Figure S923. Get High-res Image Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PYGO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00674 (Fisher's exact test), Q value = 0.041

Table S1808. Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PYGO2 MUTATED	5	2	0	0
PYGO2 WILD-TYPE	51	103	60	68

Figure S924. Get High-res Image Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PYGO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.25

Table S1809. Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PYGO2 MUTATED	0	2	2	2	0	0
PYGO2 WILD-TYPE	34	16	57	36	19	43

'PYGO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00094 (Fisher's exact test), Q value = 0.012

Table S1810. Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PYGO2 MUTATED	1	0	5
PYGO2 WILD-TYPE	121	51	33

Figure S925. Get High-res Image Gene #181: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C1R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.45

Table S1811. Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C1R MUTATED	0	4	1	0	0
C1R WILD-TYPE	79	122	26	43	12

'C1R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S1812. Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C1R MUTATED	0	1	2	1
C1R WILD-TYPE	71	75	32	62

'C1R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.56

Table S1813. Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C1R MUTATED	3	1	1
C1R WILD-TYPE	75	85	84

'C1R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00451 (Fisher's exact test), Q value = 0.032

Table S1814. Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C1R MUTATED	2	0	3	0
C1R WILD-TYPE	31	78	48	87

Figure S926. Get High-res Image Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C1R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0972 (Fisher's exact test), Q value = 0.2

Table S1815. Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C1R MUTATED	3	0	0	0	0
C1R WILD-TYPE	62	59	42	34	57

'C1R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00638 (Fisher's exact test), Q value = 0.039

Table S1816. Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C1R MUTATED	1	0	0	0	0	0	2
C1R WILD-TYPE	35	21	48	56	39	37	18

Figure S927. Get High-res Image Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C1R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.43

Table S1817. Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C1R MUTATED	4	1	0
C1R WILD-TYPE	122	95	67

'C1R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.56

Table S1818. Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C1R MUTATED	2	2	1	0
C1R WILD-TYPE	54	103	59	68

'C1R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 0.97

Table S1819. Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C1R MUTATED	1	0	1	0	0	1
C1R WILD-TYPE	33	18	58	38	19	42

'C1R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.5

Table S1820. Gene #182: 'C1R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C1R MUTATED	1	1	1
C1R WILD-TYPE	121	50	37

'FGGY MUTATION STATUS' versus 'CN_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.72

Table S1821. Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FGGY MUTATED	3	6	0	0	0
FGGY WILD-TYPE	76	120	27	43	12

'FGGY MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.53

Table S1822. Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FGGY MUTATED	1	3	1	0
FGGY WILD-TYPE	70	73	33	63

'FGGY MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.15

Table S1823. Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FGGY MUTATED	3	0	5
FGGY WILD-TYPE	75	86	80

'FGGY MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.25

Table S1824. Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FGGY MUTATED	0	3	4	1
FGGY WILD-TYPE	33	75	47	86

'FGGY MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.33

Table S1825. Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FGGY MUTATED	4	0	2	2	1
FGGY WILD-TYPE	61	59	40	32	56

'FGGY MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.38

Table S1826. Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FGGY MUTATED	2	0	0	4	2	0	1
FGGY WILD-TYPE	34	21	48	52	37	37	19

'FGGY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.11

Table S1827. Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FGGY MUTATED	7	0	2
FGGY WILD-TYPE	119	96	65

Figure S928. Get High-res Image Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FGGY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.12

Table S1828. Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FGGY MUTATED	5	2	0	2
FGGY WILD-TYPE	51	103	60	66

Figure S929. Get High-res Image Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FGGY MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.71

Table S1829. Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FGGY MUTATED	1	0	3	2	0	0
FGGY WILD-TYPE	33	18	56	36	19	43

'FGGY MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.43

Table S1830. Gene #183: 'FGGY MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FGGY MUTATED	4	0	2
FGGY WILD-TYPE	118	51	36

'MSH6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.064

Table S1831. Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MSH6 MUTATED	0	11	3	4	1
MSH6 WILD-TYPE	79	115	24	39	11

Figure S930. Get High-res Image Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MSH6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.084

Table S1832. Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MSH6 MUTATED	2	10	2	1
MSH6 WILD-TYPE	69	66	32	62

Figure S931. Get High-res Image Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MSH6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00742 (Fisher's exact test), Q value = 0.043

Table S1833. Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MSH6 MUTATED	12	5	2
MSH6 WILD-TYPE	66	81	83

Figure S932. Get High-res Image Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MSH6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00872 (Fisher's exact test), Q value = 0.048

Table S1834. Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MSH6 MUTATED	5	2	8	4
MSH6 WILD-TYPE	28	76	43	83

Figure S933. Get High-res Image Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.31

Table S1835. Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MSH6 MUTATED	7	3	2	4	1
MSH6 WILD-TYPE	58	56	40	30	56

'MSH6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0031

Table S1836. Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MSH6 MUTATED	4	0	0	2	3	1	7
MSH6 WILD-TYPE	32	21	48	54	36	36	13

Figure S934. Get High-res Image Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.32

Table S1837. Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MSH6 MUTATED	12	5	2
MSH6 WILD-TYPE	114	91	65

'MSH6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0467 (Fisher's exact test), Q value = 0.13

Table S1838. Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MSH6 MUTATED	7	9	2	1
MSH6 WILD-TYPE	49	96	58	67

Figure S935. Get High-res Image Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.4

Table S1839. Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MSH6 MUTATED	1	3	3	4	0	2
MSH6 WILD-TYPE	33	15	56	34	19	41

'MSH6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S1840. Gene #184: 'MSH6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MSH6 MUTATED	6	2	5
MSH6 WILD-TYPE	116	49	33

'RNF111 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.16

Table S1841. Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RNF111 MUTATED	0	9	0	1	0
RNF111 WILD-TYPE	79	117	27	42	12

'RNF111 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.21

Table S1842. Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RNF111 MUTATED	0	4	0	1
RNF111 WILD-TYPE	71	72	34	62

'RNF111 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00671 (Fisher's exact test), Q value = 0.04

Table S1843. Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RNF111 MUTATED	7	0	3
RNF111 WILD-TYPE	71	86	82

Figure S936. Get High-res Image Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RNF111 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.092

Table S1844. Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RNF111 MUTATED	1	2	6	1
RNF111 WILD-TYPE	32	76	45	86

Figure S937. Get High-res Image Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RNF111 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.43

Table S1845. Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RNF111 MUTATED	4	2	1	2	0
RNF111 WILD-TYPE	61	57	41	32	57

'RNF111 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.11

Table S1846. Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RNF111 MUTATED	3	0	1	0	4	0	1
RNF111 WILD-TYPE	33	21	47	56	35	37	19

Figure S938. Get High-res Image Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RNF111 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.18

Table S1847. Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RNF111 MUTATED	8	1	1
RNF111 WILD-TYPE	118	95	66

'RNF111 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.097

Table S1848. Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RNF111 MUTATED	6	2	1	1
RNF111 WILD-TYPE	50	103	59	67

Figure S939. Get High-res Image Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RNF111 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.82

Table S1849. Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RNF111 MUTATED	1	1	2	0	0	1
RNF111 WILD-TYPE	33	17	57	38	19	42

'RNF111 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.35

Table S1850. Gene #185: 'RNF111 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RNF111 MUTATED	5	0	0
RNF111 WILD-TYPE	117	51	38

'ABCA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.084

Table S1851. Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ABCA6 MUTATED	0	11	0	1	0
ABCA6 WILD-TYPE	79	115	27	42	12

Figure S940. Get High-res Image Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00082 (Fisher's exact test), Q value = 0.012

Table S1852. Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ABCA6 MUTATED	0	8	1	0
ABCA6 WILD-TYPE	71	68	33	63

Figure S941. Get High-res Image Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.17

Table S1853. Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ABCA6 MUTATED	7	2	2
ABCA6 WILD-TYPE	71	84	83

'ABCA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.32

Table S1854. Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ABCA6 MUTATED	0	3	5	3
ABCA6 WILD-TYPE	33	75	46	84

'ABCA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.25

Table S1855. Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ABCA6 MUTATED	5	3	1	3	0
ABCA6 WILD-TYPE	60	56	41	31	57

'ABCA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0633 (Fisher's exact test), Q value = 0.16

Table S1856. Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ABCA6 MUTATED	0	1	2	2	4	0	3
ABCA6 WILD-TYPE	36	20	46	54	35	37	17

'ABCA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.29

Table S1857. Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ABCA6 MUTATED	9	3	1
ABCA6 WILD-TYPE	117	93	66

'ABCA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0314 (Fisher's exact test), Q value = 0.1

Table S1858. Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ABCA6 MUTATED	7	3	1	2
ABCA6 WILD-TYPE	49	102	59	66

Figure S942. Get High-res Image Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 0.81

Table S1859. Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ABCA6 MUTATED	2	1	2	3	0	1
ABCA6 WILD-TYPE	32	17	57	35	19	42

'ABCA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 0.94

Table S1860. Gene #186: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ABCA6 MUTATED	5	2	2
ABCA6 WILD-TYPE	117	49	36

'WDR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0058

Table S1861. Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WDR7 MUTATED	0	16	0	0	0
WDR7 WILD-TYPE	79	110	27	43	12

Figure S943. Get High-res Image Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WDR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.069

Table S1862. Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WDR7 MUTATED	1	10	1	2
WDR7 WILD-TYPE	70	66	33	61

Figure S944. Get High-res Image Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WDR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.44

Table S1863. Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
WDR7 MUTATED	7	3	6
WDR7 WILD-TYPE	71	83	79

'WDR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.078

Table S1864. Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
WDR7 MUTATED	4	2	7	3
WDR7 WILD-TYPE	29	76	44	84

Figure S945. Get High-res Image Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WDR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.078

Table S1865. Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
WDR7 MUTATED	6	2	2	5	0
WDR7 WILD-TYPE	59	57	40	29	57

Figure S946. Get High-res Image Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WDR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00441 (Fisher's exact test), Q value = 0.031

Table S1866. Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
WDR7 MUTATED	4	0	0	3	4	0	4
WDR7 WILD-TYPE	32	21	48	53	35	37	16

Figure S947. Get High-res Image Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00672 (Fisher's exact test), Q value = 0.04

Table S1867. Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
WDR7 MUTATED	13	4	0
WDR7 WILD-TYPE	113	92	67

Figure S948. Get High-res Image Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00631 (Fisher's exact test), Q value = 0.039

Table S1868. Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
WDR7 MUTATED	8	6	3	0
WDR7 WILD-TYPE	48	99	57	68

Figure S949. Get High-res Image Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.23

Table S1869. Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
WDR7 MUTATED	2	3	7	1	0	1
WDR7 WILD-TYPE	32	15	52	37	19	42

'WDR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 0.34

Table S1870. Gene #187: 'WDR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
WDR7 MUTATED	7	2	5
WDR7 WILD-TYPE	115	49	33

'ZC3H13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.0093

Table S1871. Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZC3H13 MUTATED	1	21	4	1	1
ZC3H13 WILD-TYPE	78	105	23	42	11

Figure S950. Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZC3H13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S1872. Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZC3H13 MUTATED	0	15	3	3
ZC3H13 WILD-TYPE	71	61	31	60

Figure S951. Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZC3H13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S1873. Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZC3H13 MUTATED	18	1	5
ZC3H13 WILD-TYPE	60	85	80

Figure S952. Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZC3H13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S1874. Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZC3H13 MUTATED	5	3	14	2
ZC3H13 WILD-TYPE	28	75	37	85

Figure S953. Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.016

Table S1875. Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZC3H13 MUTATED	15	1	4	4	3
ZC3H13 WILD-TYPE	50	58	38	30	54

Figure S954. Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0043

Table S1876. Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZC3H13 MUTATED	2	0	2	6	8	1	8
ZC3H13 WILD-TYPE	34	21	46	50	31	36	12

Figure S955. Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S1877. Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZC3H13 MUTATED	25	2	2
ZC3H13 WILD-TYPE	101	94	65

Figure S956. Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S1878. Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZC3H13 MUTATED	17	7	1	4
ZC3H13 WILD-TYPE	39	98	59	64

Figure S957. Get High-res Image Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S1879. Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZC3H13 MUTATED	3	3	8	3	0	1
ZC3H13 WILD-TYPE	31	15	51	35	19	42

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.27

Table S1880. Gene #188: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZC3H13 MUTATED	10	2	6
ZC3H13 WILD-TYPE	112	49	32

'IGFBP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.64

Table S1881. Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IGFBP7 MUTATED	0	3	0	0	0
IGFBP7 WILD-TYPE	79	123	27	43	12

'IGFBP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.26

Table S1882. Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IGFBP7 MUTATED	0	3	0	0
IGFBP7 WILD-TYPE	71	73	34	63

'IGFBP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.21

Table S1883. Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IGFBP7 MUTATED	3	0	0	0	0
IGFBP7 WILD-TYPE	62	59	42	34	57

'IGFBP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0682 (Fisher's exact test), Q value = 0.16

Table S1884. Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IGFBP7 MUTATED	0	0	0	0	2	0	1
IGFBP7 WILD-TYPE	36	21	48	56	37	37	19

'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S1885. Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IGFBP7 MUTATED	4	0	0
IGFBP7 WILD-TYPE	122	96	67

'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00136 (Fisher's exact test), Q value = 0.016

Table S1886. Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IGFBP7 MUTATED	4	0	0	0
IGFBP7 WILD-TYPE	52	105	60	68

Figure S958. Get High-res Image Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 0.92

Table S1887. Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IGFBP7 MUTATED	1	0	1	1	0	0
IGFBP7 WILD-TYPE	33	18	58	37	19	43

'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S1888. Gene #189: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IGFBP7 MUTATED	1	0	2
IGFBP7 WILD-TYPE	121	51	36

'HNF1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.34

Table S1889. Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HNF1B MUTATED	0	5	1	0	0
HNF1B WILD-TYPE	79	121	26	43	12

'HNF1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.054

Table S1890. Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HNF1B MUTATED	0	2	3	0
HNF1B WILD-TYPE	71	74	31	63

Figure S959. Get High-res Image Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HNF1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.12

Table S1891. Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HNF1B MUTATED	4	1	0
HNF1B WILD-TYPE	74	85	85

Figure S960. Get High-res Image Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HNF1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0822 (Fisher's exact test), Q value = 0.18

Table S1892. Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HNF1B MUTATED	1	0	3	1
HNF1B WILD-TYPE	32	78	48	86

'HNF1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00714 (Fisher's exact test), Q value = 0.042

Table S1893. Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HNF1B MUTATED	5	0	0	0	0
HNF1B WILD-TYPE	60	59	42	34	57

Figure S961. Get High-res Image Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HNF1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0221 (Fisher's exact test), Q value = 0.082

Table S1894. Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HNF1B MUTATED	2	0	0	0	1	0	2
HNF1B WILD-TYPE	34	21	48	56	38	37	18

Figure S962. Get High-res Image Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HNF1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S1895. Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HNF1B MUTATED	5	0	1
HNF1B WILD-TYPE	121	96	66

'HNF1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0286 (Fisher's exact test), Q value = 0.095

Table S1896. Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HNF1B MUTATED	4	2	0	0
HNF1B WILD-TYPE	52	103	60	68

Figure S963. Get High-res Image Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.61

Table S1897. Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HNF1B MUTATED	1	1	1	1	1	0
HNF1B WILD-TYPE	33	17	58	37	18	43

'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.41

Table S1898. Gene #190: 'HNF1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HNF1B MUTATED	3	0	2
HNF1B WILD-TYPE	119	51	36

'FAM113B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.085

Table S1899. Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM113B MUTATED	0	11	0	1	0
FAM113B WILD-TYPE	79	115	27	42	12

Figure S964. Get High-res Image Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM113B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00707 (Fisher's exact test), Q value = 0.042

Table S1900. Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM113B MUTATED	0	8	0	3
FAM113B WILD-TYPE	71	68	34	60

Figure S965. Get High-res Image Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM113B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.012

Table S1901. Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FAM113B MUTATED	9	1	1
FAM113B WILD-TYPE	69	85	84

Figure S966. Get High-res Image Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FAM113B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0302 (Fisher's exact test), Q value = 0.099

Table S1902. Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FAM113B MUTATED	4	1	4	2
FAM113B WILD-TYPE	29	77	47	85

Figure S967. Get High-res Image Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM113B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.019

Table S1903. Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FAM113B MUTATED	8	1	0	3	0
FAM113B WILD-TYPE	57	58	42	31	57

Figure S968. Get High-res Image Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM113B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S1904. Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FAM113B MUTATED	4	0	0	0	3	0	5
FAM113B WILD-TYPE	32	21	48	56	36	37	15

Figure S969. Get High-res Image Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM113B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00813 (Fisher's exact test), Q value = 0.046

Table S1905. Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FAM113B MUTATED	11	2	0
FAM113B WILD-TYPE	115	94	67

Figure S970. Get High-res Image Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM113B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00745 (Fisher's exact test), Q value = 0.043

Table S1906. Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FAM113B MUTATED	7	5	0	1
FAM113B WILD-TYPE	49	100	60	67

Figure S971. Get High-res Image Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.39

Table S1907. Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FAM113B MUTATED	2	0	4	4	1	0
FAM113B WILD-TYPE	32	18	55	34	18	43

'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.22

Table S1908. Gene #191: 'FAM113B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FAM113B MUTATED	8	0	3
FAM113B WILD-TYPE	114	51	35

'RRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.67

Table S1909. Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RRS1 MUTATED	1	5	1	0	0
RRS1 WILD-TYPE	78	121	26	43	12

'RRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.55

Table S1910. Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RRS1 MUTATED	2	3	0	0
RRS1 WILD-TYPE	69	73	34	63

'RRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.36

Table S1911. Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RRS1 MUTATED	2	0	3
RRS1 WILD-TYPE	76	86	82

'RRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 0.69

Table S1912. Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RRS1 MUTATED	0	2	2	1
RRS1 WILD-TYPE	33	76	49	86

'RRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.15

Table S1913. Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RRS1 MUTATED	3	0	0	3	1
RRS1 WILD-TYPE	62	59	42	31	56

'RRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.0094

Table S1914. Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RRS1 MUTATED	0	0	0	0	2	1	4
RRS1 WILD-TYPE	36	21	48	56	37	36	16

Figure S972. Get High-res Image Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S1915. Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RRS1 MUTATED	4	2	1
RRS1 WILD-TYPE	122	94	66

'RRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0909 (Fisher's exact test), Q value = 0.19

Table S1916. Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RRS1 MUTATED	3	4	0	0
RRS1 WILD-TYPE	53	101	60	68

'RRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.4

Table S1917. Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RRS1 MUTATED	1	0	1	3	0	0
RRS1 WILD-TYPE	33	18	58	35	19	43

'RRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.58

Table S1918. Gene #192: 'RRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RRS1 MUTATED	4	0	1
RRS1 WILD-TYPE	118	51	37

'WNK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.061

Table S1919. Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WNK4 MUTATED	1	16	2	1	1
WNK4 WILD-TYPE	78	110	25	42	11

Figure S973. Get High-res Image Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WNK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.082

Table S1920. Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WNK4 MUTATED	2	11	1	2
WNK4 WILD-TYPE	69	65	33	61

Figure S974. Get High-res Image Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WNK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00389 (Fisher's exact test), Q value = 0.03

Table S1921. Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
WNK4 MUTATED	11	1	6
WNK4 WILD-TYPE	67	85	79

Figure S975. Get High-res Image Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WNK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0507 (Fisher's exact test), Q value = 0.14

Table S1922. Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
WNK4 MUTATED	3	4	8	3
WNK4 WILD-TYPE	30	74	43	84

'WNK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 0.18

Table S1923. Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
WNK4 MUTATED	9	2	3	2	1
WNK4 WILD-TYPE	56	57	39	32	56

'WNK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00359 (Fisher's exact test), Q value = 0.028

Table S1924. Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
WNK4 MUTATED	4	0	1	4	1	1	6
WNK4 WILD-TYPE	32	21	47	52	38	36	14

Figure S976. Get High-res Image Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WNK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.095

Table S1925. Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
WNK4 MUTATED	14	2	5
WNK4 WILD-TYPE	112	94	62

Figure S977. Get High-res Image Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WNK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0483 (Fisher's exact test), Q value = 0.13

Table S1926. Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
WNK4 MUTATED	8	9	1	3
WNK4 WILD-TYPE	48	96	59	65

Figure S978. Get High-res Image Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WNK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.31

Table S1927. Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
WNK4 MUTATED	2	2	4	6	0	1
WNK4 WILD-TYPE	32	16	55	32	19	42

'WNK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.32

Table S1928. Gene #193: 'WNK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
WNK4 MUTATED	10	1	4
WNK4 WILD-TYPE	112	50	34

'RAD51AP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S1929. Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RAD51AP2 MUTATED	2	9	0	1	0
RAD51AP2 WILD-TYPE	77	117	27	42	12

'RAD51AP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.8

Table S1930. Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RAD51AP2 MUTATED	2	5	1	2
RAD51AP2 WILD-TYPE	69	71	33	61

'RAD51AP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.077

Table S1931. Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RAD51AP2 MUTATED	6	0	4
RAD51AP2 WILD-TYPE	72	86	81

Figure S979. Get High-res Image Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0319 (Fisher's exact test), Q value = 0.1

Table S1932. Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RAD51AP2 MUTATED	1	5	4	0
RAD51AP2 WILD-TYPE	32	73	47	87

Figure S980. Get High-res Image Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.5

Table S1933. Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RAD51AP2 MUTATED	5	1	1	2	1
RAD51AP2 WILD-TYPE	60	58	41	32	56

'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.065

Table S1934. Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RAD51AP2 MUTATED	2	0	0	1	2	1	4
RAD51AP2 WILD-TYPE	34	21	48	55	37	36	16

Figure S981. Get High-res Image Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.054

Table S1935. Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RAD51AP2 MUTATED	9	0	3
RAD51AP2 WILD-TYPE	117	96	64

Figure S982. Get High-res Image Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.33

Table S1936. Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RAD51AP2 MUTATED	4	5	0	3
RAD51AP2 WILD-TYPE	52	100	60	65

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S1937. Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RAD51AP2 MUTATED	2	1	1	4	0	0
RAD51AP2 WILD-TYPE	32	17	58	34	19	43

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S1938. Gene #194: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RAD51AP2 MUTATED	5	0	3
RAD51AP2 WILD-TYPE	117	51	35

'PIGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.25

Table S1939. Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIGB MUTATED	0	8	1	1	0
PIGB WILD-TYPE	79	118	26	42	12

'PIGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.13

Table S1940. Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIGB MUTATED	0	3	3	1
PIGB WILD-TYPE	71	73	31	62

Figure S983. Get High-res Image Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIGB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.12

Table S1941. Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PIGB MUTATED	5	0	3
PIGB WILD-TYPE	73	86	82

Figure S984. Get High-res Image Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PIGB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.083

Table S1942. Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PIGB MUTATED	2	2	4	0
PIGB WILD-TYPE	31	76	47	87

Figure S985. Get High-res Image Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.11

Table S1943. Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PIGB MUTATED	6	1	2	0	0
PIGB WILD-TYPE	59	58	40	34	57

Figure S986. Get High-res Image Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S1944. Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PIGB MUTATED	3	1	0	2	1	0	2
PIGB WILD-TYPE	33	20	48	54	38	37	18

'PIGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.054

Table S1945. Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PIGB MUTATED	9	1	0
PIGB WILD-TYPE	117	95	67

Figure S987. Get High-res Image Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.13

Table S1946. Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PIGB MUTATED	5	4	1	0
PIGB WILD-TYPE	51	101	59	68

Figure S988. Get High-res Image Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PIGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.61

Table S1947. Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PIGB MUTATED	0	0	2	3	0	1
PIGB WILD-TYPE	34	18	57	35	19	42

'PIGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1948. Gene #195: 'PIGB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PIGB MUTATED	4	1	1
PIGB WILD-TYPE	118	50	37

'OGDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.33

Table S1949. Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OGDH MUTATED	1	8	0	0	0
OGDH WILD-TYPE	78	118	27	43	12

'OGDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.4

Table S1950. Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OGDH MUTATED	0	3	0	1
OGDH WILD-TYPE	71	73	34	62

'OGDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.44

Table S1951. Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OGDH MUTATED	4	1	3
OGDH WILD-TYPE	74	85	82

'OGDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0753 (Fisher's exact test), Q value = 0.17

Table S1952. Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OGDH MUTATED	2	1	4	1
OGDH WILD-TYPE	31	77	47	86

'OGDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.66

Table S1953. Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OGDH MUTATED	4	1	1	2	1
OGDH WILD-TYPE	61	58	41	32	56

'OGDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.22

Table S1954. Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OGDH MUTATED	3	0	0	2	2	0	2
OGDH WILD-TYPE	33	21	48	54	37	37	18

'OGDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.26

Table S1955. Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OGDH MUTATED	7	1	1
OGDH WILD-TYPE	119	95	66

'OGDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00361 (Fisher's exact test), Q value = 0.028

Table S1956. Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OGDH MUTATED	6	1	0	2
OGDH WILD-TYPE	50	104	60	66

Figure S989. Get High-res Image Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.48

Table S1957. Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OGDH MUTATED	1	1	2	0	1	0
OGDH WILD-TYPE	33	17	57	38	18	43

'OGDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 0.15

Table S1958. Gene #196: 'OGDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OGDH MUTATED	2	0	3
OGDH WILD-TYPE	120	51	35

'SERPINB12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.8

Table S1959. Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SERPINB12 MUTATED	2	5	1	0	0
SERPINB12 WILD-TYPE	77	121	26	43	12

'SERPINB12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.73

Table S1960. Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SERPINB12 MUTATED	1	3	0	1
SERPINB12 WILD-TYPE	70	73	34	62

'SERPINB12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.29

Table S1961. Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SERPINB12 MUTATED	3	0	2
SERPINB12 WILD-TYPE	75	86	83

'SERPINB12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0906 (Fisher's exact test), Q value = 0.19

Table S1962. Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SERPINB12 MUTATED	0	2	3	0
SERPINB12 WILD-TYPE	33	76	48	87

'SERPINB12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.2

Table S1963. Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SERPINB12 MUTATED	4	0	0	2	1
SERPINB12 WILD-TYPE	61	59	42	32	56

'SERPINB12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.093

Table S1964. Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SERPINB12 MUTATED	1	0	0	1	2	0	3
SERPINB12 WILD-TYPE	35	21	48	55	37	37	17

Figure S990. Get High-res Image Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.092

Table S1965. Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SERPINB12 MUTATED	7	0	1
SERPINB12 WILD-TYPE	119	96	66

Figure S991. Get High-res Image Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0268 (Fisher's exact test), Q value = 0.092

Table S1966. Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SERPINB12 MUTATED	5	2	0	1
SERPINB12 WILD-TYPE	51	103	60	67

Figure S992. Get High-res Image Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.77

Table S1967. Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SERPINB12 MUTATED	1	0	2	2	0	0
SERPINB12 WILD-TYPE	33	18	57	36	19	43

'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0598 (Fisher's exact test), Q value = 0.15

Table S1968. Gene #197: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SERPINB12 MUTATED	2	0	3
SERPINB12 WILD-TYPE	120	51	35

'HEXDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.42

Table S1969. Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HEXDC MUTATED	0	5	0	0	0
HEXDC WILD-TYPE	79	121	27	43	12

'HEXDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.4

Table S1970. Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HEXDC MUTATED	0	3	0	1
HEXDC WILD-TYPE	71	73	34	62

'HEXDC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.29

Table S1971. Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HEXDC MUTATED	3	0	2
HEXDC WILD-TYPE	75	86	83

'HEXDC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.26

Table S1972. Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HEXDC MUTATED	0	3	2	0
HEXDC WILD-TYPE	33	75	49	87

'HEXDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.52

Table S1973. Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HEXDC MUTATED	1	1	2	0	0
HEXDC WILD-TYPE	64	58	40	34	57

'HEXDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.49

Table S1974. Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HEXDC MUTATED	1	0	0	2	0	0	1
HEXDC WILD-TYPE	35	21	48	54	39	37	19

'HEXDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.43

Table S1975. Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HEXDC MUTATED	4	1	0
HEXDC WILD-TYPE	122	95	67

'HEXDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.66

Table S1976. Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HEXDC MUTATED	1	3	1	0
HEXDC WILD-TYPE	55	102	59	68

'HEXDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.42

Table S1977. Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HEXDC MUTATED	0	0	0	2	0	1
HEXDC WILD-TYPE	34	18	59	36	19	42

'HEXDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1978. Gene #198: 'HEXDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HEXDC MUTATED	2	1	0
HEXDC WILD-TYPE	120	50	38

'GATA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.19

Table S1979. Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GATA3 MUTATED	1	12	2	1	0
GATA3 WILD-TYPE	78	114	25	42	12

'GATA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.19

Table S1980. Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GATA3 MUTATED	2	6	4	1
GATA3 WILD-TYPE	69	70	30	62

'GATA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.067

Table S1981. Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GATA3 MUTATED	9	1	4
GATA3 WILD-TYPE	69	85	81

Figure S993. Get High-res Image Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GATA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0704 (Fisher's exact test), Q value = 0.17

Table S1982. Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GATA3 MUTATED	2	1	6	5
GATA3 WILD-TYPE	31	77	45	82

'GATA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.22

Table S1983. Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GATA3 MUTATED	8	2	1	2	1
GATA3 WILD-TYPE	57	57	41	32	56

'GATA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.3

Table S1984. Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GATA3 MUTATED	2	1	1	3	5	0	2
GATA3 WILD-TYPE	34	20	47	53	34	37	18

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.11

Table S1985. Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GATA3 MUTATED	10	6	0
GATA3 WILD-TYPE	116	90	67

Figure S994. Get High-res Image Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S1986. Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GATA3 MUTATED	6	6	3	1
GATA3 WILD-TYPE	50	99	57	67

'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 0.87

Table S1987. Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GATA3 MUTATED	2	1	3	4	0	3
GATA3 WILD-TYPE	32	17	56	34	19	40

'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1988. Gene #199: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GATA3 MUTATED	8	3	2
GATA3 WILD-TYPE	114	48	36

'GPR82 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 0.8

Table S1989. Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPR82 MUTATED	1	6	1	1	0
GPR82 WILD-TYPE	78	120	26	42	12

'GPR82 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.073

Table S1990. Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPR82 MUTATED	1	7	1	0
GPR82 WILD-TYPE	70	69	33	63

Figure S995. Get High-res Image Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPR82 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.11

Table S1991. Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GPR82 MUTATED	6	1	1
GPR82 WILD-TYPE	72	85	84

Figure S996. Get High-res Image Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPR82 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0332 (Fisher's exact test), Q value = 0.11

Table S1992. Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GPR82 MUTATED	1	1	5	1
GPR82 WILD-TYPE	32	77	46	86

Figure S997. Get High-res Image Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR82 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.22

Table S1993. Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GPR82 MUTATED	5	0	1	0	2
GPR82 WILD-TYPE	60	59	41	34	55

'GPR82 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0507 (Fisher's exact test), Q value = 0.14

Table S1994. Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GPR82 MUTATED	0	0	0	3	3	0	2
GPR82 WILD-TYPE	36	21	48	53	36	37	18

'GPR82 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S1995. Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GPR82 MUTATED	7	1	1
GPR82 WILD-TYPE	119	95	66

'GPR82 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0786 (Fisher's exact test), Q value = 0.18

Table S1996. Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GPR82 MUTATED	5	2	1	1
GPR82 WILD-TYPE	51	103	59	67

'GPR82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 0.61

Table S1997. Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GPR82 MUTATED	2	1	2	2	0	0
GPR82 WILD-TYPE	32	17	57	36	19	43

'GPR82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 0.81

Table S1998. Gene #200: 'GPR82 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GPR82 MUTATED	4	1	2
GPR82 WILD-TYPE	118	50	36

'ELF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.12

Table S1999. Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ELF3 MUTATED	0	9	1	0	0
ELF3 WILD-TYPE	79	117	26	43	12

Figure S998. Get High-res Image Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ELF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.28

Table S2000. Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ELF3 MUTATED	0	4	2	2
ELF3 WILD-TYPE	71	72	32	61

'ELF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.17

Table S2001. Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ELF3 MUTATED	7	2	2
ELF3 WILD-TYPE	71	84	83

'ELF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0251 (Fisher's exact test), Q value = 0.089

Table S2002. Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ELF3 MUTATED	4	2	4	1
ELF3 WILD-TYPE	29	76	47	86

Figure S999. Get High-res Image Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ELF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00777 (Fisher's exact test), Q value = 0.045

Table S2003. Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ELF3 MUTATED	5	1	0	4	0
ELF3 WILD-TYPE	60	58	42	30	57

Figure S1000. Get High-res Image Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ELF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.054

Table S2004. Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ELF3 MUTATED	3	0	1	0	3	0	3
ELF3 WILD-TYPE	33	21	47	56	36	37	17

Figure S1001. Get High-res Image Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.0058

Table S2005. Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ELF3 MUTATED	11	0	0
ELF3 WILD-TYPE	115	96	67

Figure S1002. Get High-res Image Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00098 (Fisher's exact test), Q value = 0.013

Table S2006. Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ELF3 MUTATED	7	4	0	0
ELF3 WILD-TYPE	49	101	60	68

Figure S1003. Get High-res Image Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.079

Table S2007. Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ELF3 MUTATED	1	0	7	0	0	0
ELF3 WILD-TYPE	33	18	52	38	19	43

Figure S1004. Get High-res Image Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.37

Table S2008. Gene #201: 'ELF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ELF3 MUTATED	6	0	2
ELF3 WILD-TYPE	116	51	36

'EPHX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.14

Table S2009. Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPHX1 MUTATED	0	7	1	0	1
EPHX1 WILD-TYPE	79	119	26	43	11

'EPHX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 0.14

Table S2010. Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPHX1 MUTATED	0	5	0	1
EPHX1 WILD-TYPE	71	71	34	62

'EPHX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00991 (Fisher's exact test), Q value = 0.051

Table S2011. Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EPHX1 MUTATED	6	0	2
EPHX1 WILD-TYPE	72	86	83

Figure S1005. Get High-res Image Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPHX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.086

Table S2012. Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EPHX1 MUTATED	2	2	4	0
EPHX1 WILD-TYPE	31	76	47	87

Figure S1006. Get High-res Image Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.055

Table S2013. Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EPHX1 MUTATED	5	0	0	2	0
EPHX1 WILD-TYPE	60	59	42	32	57

Figure S1007. Get High-res Image Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.36

Table S2014. Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EPHX1 MUTATED	1	0	0	3	3	0	0
EPHX1 WILD-TYPE	35	21	48	53	36	37	20

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00185 (Fisher's exact test), Q value = 0.019

Table S2015. Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EPHX1 MUTATED	9	0	0
EPHX1 WILD-TYPE	117	96	67

Figure S1008. Get High-res Image Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0055

Table S2016. Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EPHX1 MUTATED	7	2	0	0
EPHX1 WILD-TYPE	49	103	60	68

Figure S1009. Get High-res Image Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.12

Table S2017. Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EPHX1 MUTATED	0	2	4	0	0	0
EPHX1 WILD-TYPE	34	16	55	38	19	43

Figure S1010. Get High-res Image Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.07

Table S2018. Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EPHX1 MUTATED	2	0	4
EPHX1 WILD-TYPE	120	51	34

Figure S1011. Get High-res Image Gene #202: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CNBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.52

Table S2019. Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CNBD1 MUTATED	6	4	0	3	0
CNBD1 WILD-TYPE	73	122	27	40	12

'CNBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.13

Table S2020. Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CNBD1 MUTATED	4	6	0	0
CNBD1 WILD-TYPE	67	70	34	63

Figure S1012. Get High-res Image Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CNBD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S2021. Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CNBD1 MUTATED	4	1	6
CNBD1 WILD-TYPE	74	85	79

'CNBD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.73

Table S2022. Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CNBD1 MUTATED	0	4	3	4
CNBD1 WILD-TYPE	33	74	48	83

'CNBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.2

Table S2023. Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CNBD1 MUTATED	4	1	0	1	6
CNBD1 WILD-TYPE	61	58	42	33	51

'CNBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S2024. Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CNBD1 MUTATED	4	0	0	2	1	3	2
CNBD1 WILD-TYPE	32	21	48	54	38	34	18

'CNBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.48

Table S2025. Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CNBD1 MUTATED	7	2	4
CNBD1 WILD-TYPE	119	94	63

'CNBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.39

Table S2026. Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CNBD1 MUTATED	4	3	1	5
CNBD1 WILD-TYPE	52	102	59	63

'CNBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S2027. Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CNBD1 MUTATED	1	1	2	3	1	1
CNBD1 WILD-TYPE	33	17	57	35	18	42

'CNBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S2028. Gene #203: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CNBD1 MUTATED	6	0	3
CNBD1 WILD-TYPE	116	51	35

'SLC26A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S2029. Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC26A7 MUTATED	1	10	0	1	1
SLC26A7 WILD-TYPE	78	116	27	42	11

'SLC26A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.5

Table S2030. Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC26A7 MUTATED	4	6	1	1
SLC26A7 WILD-TYPE	67	70	33	62

'SLC26A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0955 (Fisher's exact test), Q value = 0.2

Table S2031. Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC26A7 MUTATED	6	1	5
SLC26A7 WILD-TYPE	72	85	80

'SLC26A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S2032. Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC26A7 MUTATED	1	3	6	2
SLC26A7 WILD-TYPE	32	75	45	85

'SLC26A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00719 (Fisher's exact test), Q value = 0.042

Table S2033. Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC26A7 MUTATED	5	0	4	3	0
SLC26A7 WILD-TYPE	60	59	38	31	57

Figure S1013. Get High-res Image Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC26A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.072

Table S2034. Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC26A7 MUTATED	1	1	0	6	1	0	3
SLC26A7 WILD-TYPE	35	20	48	50	38	37	17

Figure S1014. Get High-res Image Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0496 (Fisher's exact test), Q value = 0.13

Table S2035. Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC26A7 MUTATED	10	1	3
SLC26A7 WILD-TYPE	116	95	64

Figure S1015. Get High-res Image Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.4

Table S2036. Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC26A7 MUTATED	5	6	1	2
SLC26A7 WILD-TYPE	51	99	59	66

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0893 (Fisher's exact test), Q value = 0.19

Table S2037. Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLC26A7 MUTATED	3	3	3	2	0	0
SLC26A7 WILD-TYPE	31	15	56	36	19	43

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00357 (Fisher's exact test), Q value = 0.028

Table S2038. Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLC26A7 MUTATED	5	0	6
SLC26A7 WILD-TYPE	117	51	32

Figure S1016. Get High-res Image Gene #204: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.096

Table S2039. Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RCOR3 MUTATED	0	9	2	0	0
RCOR3 WILD-TYPE	79	117	25	43	12

Figure S1017. Get High-res Image Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RCOR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00115 (Fisher's exact test), Q value = 0.014

Table S2040. Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RCOR3 MUTATED	0	8	2	0
RCOR3 WILD-TYPE	71	68	32	63

Figure S1018. Get High-res Image Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RCOR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00118 (Fisher's exact test), Q value = 0.014

Table S2041. Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RCOR3 MUTATED	9	1	1
RCOR3 WILD-TYPE	69	85	84

Figure S1019. Get High-res Image Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RCOR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00662 (Fisher's exact test), Q value = 0.04

Table S2042. Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RCOR3 MUTATED	0	1	7	3
RCOR3 WILD-TYPE	33	77	44	84

Figure S1020. Get High-res Image Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00202 (Fisher's exact test), Q value = 0.02

Table S2043. Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RCOR3 MUTATED	7	0	1	0	0
RCOR3 WILD-TYPE	58	59	41	34	57

Figure S1021. Get High-res Image Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RCOR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.13

Table S2044. Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RCOR3 MUTATED	1	0	0	2	2	0	3
RCOR3 WILD-TYPE	35	21	48	54	37	37	17

Figure S1022. Get High-res Image Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.38

Table S2045. Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RCOR3 MUTATED	8	3	1
RCOR3 WILD-TYPE	118	93	66

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00558 (Fisher's exact test), Q value = 0.036

Table S2046. Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RCOR3 MUTATED	7	3	2	0
RCOR3 WILD-TYPE	49	102	58	68

Figure S1023. Get High-res Image Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.73

Table S2047. Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RCOR3 MUTATED	3	0	4	2	0	1
RCOR3 WILD-TYPE	31	18	55	36	19	42

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.69

Table S2048. Gene #205: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RCOR3 MUTATED	5	2	3
RCOR3 WILD-TYPE	117	49	35

'CASC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.7

Table S2049. Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CASC3 MUTATED	2	6	0	0	0
CASC3 WILD-TYPE	77	120	27	43	12

'CASC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.46

Table S2050. Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CASC3 MUTATED	2	5	0	1
CASC3 WILD-TYPE	69	71	34	62

'CASC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00265 (Fisher's exact test), Q value = 0.024

Table S2051. Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CASC3 MUTATED	6	0	1
CASC3 WILD-TYPE	72	86	84

Figure S1024. Get High-res Image Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CASC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 0.95

Table S2052. Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CASC3 MUTATED	1	2	2	2
CASC3 WILD-TYPE	32	76	49	85

'CASC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 0.83

Table S2053. Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CASC3 MUTATED	2	3	1	0	1
CASC3 WILD-TYPE	63	56	41	34	56

'CASC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.57

Table S2054. Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CASC3 MUTATED	1	0	2	1	1	0	2
CASC3 WILD-TYPE	35	21	46	55	38	37	18

'CASC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2055. Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CASC3 MUTATED	3	3	2
CASC3 WILD-TYPE	123	93	65

'CASC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.925 (Fisher's exact test), Q value = 0.96

Table S2056. Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CASC3 MUTATED	1	4	1	2
CASC3 WILD-TYPE	55	101	59	66

'CASC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.64

Table S2057. Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CASC3 MUTATED	2	0	1	3	1	1
CASC3 WILD-TYPE	32	18	58	35	18	42

'CASC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S2058. Gene #206: 'CASC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CASC3 MUTATED	6	1	1
CASC3 WILD-TYPE	116	50	37

'ACVR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.18

Table S2059. Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ACVR1B MUTATED	0	8	1	1	1
ACVR1B WILD-TYPE	79	118	26	42	11

'ACVR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.21

Table S2060. Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ACVR1B MUTATED	1	6	0	1
ACVR1B WILD-TYPE	70	70	34	62

'ACVR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.54

Table S2061. Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ACVR1B MUTATED	5	2	4
ACVR1B WILD-TYPE	73	84	81

'ACVR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0716 (Fisher's exact test), Q value = 0.17

Table S2062. Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ACVR1B MUTATED	1	2	6	2
ACVR1B WILD-TYPE	32	76	45	85

'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00238 (Fisher's exact test), Q value = 0.022

Table S2063. Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ACVR1B MUTATED	4	0	0	4	0
ACVR1B WILD-TYPE	61	59	42	30	57

Figure S1025. Get High-res Image Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0985 (Fisher's exact test), Q value = 0.2

Table S2064. Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ACVR1B MUTATED	2	0	0	2	4	0	0
ACVR1B WILD-TYPE	34	21	48	54	35	37	20

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.11

Table S2065. Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ACVR1B MUTATED	9	2	0
ACVR1B WILD-TYPE	117	94	67

Figure S1026. Get High-res Image Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00325 (Fisher's exact test), Q value = 0.027

Table S2066. Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ACVR1B MUTATED	7	3	1	0
ACVR1B WILD-TYPE	49	102	59	68

Figure S1027. Get High-res Image Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.42

Table S2067. Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ACVR1B MUTATED	1	2	3	2	0	0
ACVR1B WILD-TYPE	33	16	56	36	19	43

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S2068. Gene #207: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ACVR1B MUTATED	5	0	3
ACVR1B WILD-TYPE	117	51	35

'VPS13A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.087

Table S2069. Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
VPS13A MUTATED	4	23	1	3	1
VPS13A WILD-TYPE	75	103	26	40	11

Figure S1028. Get High-res Image Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VPS13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 0.2

Table S2070. Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
VPS13A MUTATED	4	13	4	4
VPS13A WILD-TYPE	67	63	30	59

'VPS13A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00284 (Fisher's exact test), Q value = 0.025

Table S2071. Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
VPS13A MUTATED	18	6	6
VPS13A WILD-TYPE	60	80	79

Figure S1029. Get High-res Image Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'VPS13A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0038

Table S2072. Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
VPS13A MUTATED	6	2	14	8
VPS13A WILD-TYPE	27	76	37	79

Figure S1030. Get High-res Image Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'VPS13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00314 (Fisher's exact test), Q value = 0.026

Table S2073. Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
VPS13A MUTATED	16	4	4	2	2
VPS13A WILD-TYPE	49	55	38	32	55

Figure S1031. Get High-res Image Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'VPS13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.01

Table S2074. Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
VPS13A MUTATED	8	2	1	4	5	1	7
VPS13A WILD-TYPE	28	19	47	52	34	36	13

Figure S1032. Get High-res Image Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0096 (Fisher's exact test), Q value = 0.05

Table S2075. Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
VPS13A MUTATED	22	5	5
VPS13A WILD-TYPE	104	91	62

Figure S1033. Get High-res Image Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00924 (Fisher's exact test), Q value = 0.05

Table S2076. Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
VPS13A MUTATED	14	9	4	5
VPS13A WILD-TYPE	42	96	56	63

Figure S1034. Get High-res Image Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.17

Table S2077. Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
VPS13A MUTATED	3	3	11	2	1	1
VPS13A WILD-TYPE	31	15	48	36	18	42

'VPS13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.46

Table S2078. Gene #208: 'VPS13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
VPS13A MUTATED	12	3	6
VPS13A WILD-TYPE	110	48	32

'PLA2G1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S2079. Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLA2G1B MUTATED	0	3	0	1	0
PLA2G1B WILD-TYPE	79	123	27	42	12

'PLA2G1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.29

Table S2080. Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLA2G1B MUTATED	0	1	0	3
PLA2G1B WILD-TYPE	71	75	34	60

'PLA2G1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S2081. Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PLA2G1B MUTATED	1	3	0
PLA2G1B WILD-TYPE	77	83	85

'PLA2G1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 0.87

Table S2082. Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PLA2G1B MUTATED	1	1	1	1
PLA2G1B WILD-TYPE	32	77	50	86

'PLA2G1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 0.95

Table S2083. Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PLA2G1B MUTATED	2	1	0	0	1
PLA2G1B WILD-TYPE	63	58	42	34	56

'PLA2G1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 0.78

Table S2084. Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PLA2G1B MUTATED	1	0	1	1	0	0	1
PLA2G1B WILD-TYPE	35	21	47	55	39	37	19

'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 0.87

Table S2085. Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PLA2G1B MUTATED	1	2	1
PLA2G1B WILD-TYPE	125	94	66

'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 0.69

Table S2086. Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PLA2G1B MUTATED	0	3	0	1
PLA2G1B WILD-TYPE	56	102	60	67

'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.087

Table S2087. Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PLA2G1B MUTATED	0	0	0	1	2	0
PLA2G1B WILD-TYPE	34	18	59	37	17	43

Figure S1035. Get High-res Image Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2088. Gene #209: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PLA2G1B MUTATED	2	1	0
PLA2G1B WILD-TYPE	120	50	38

'ZCCHC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.067

Table S2089. Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZCCHC6 MUTATED	0	11	0	1	1
ZCCHC6 WILD-TYPE	79	115	27	42	11

Figure S1036. Get High-res Image Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.35

Table S2090. Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZCCHC6 MUTATED	1	6	1	2
ZCCHC6 WILD-TYPE	70	70	33	61

'ZCCHC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0056 (Fisher's exact test), Q value = 0.036

Table S2091. Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZCCHC6 MUTATED	9	1	2
ZCCHC6 WILD-TYPE	69	85	83

Figure S1037. Get High-res Image Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0408 (Fisher's exact test), Q value = 0.12

Table S2092. Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZCCHC6 MUTATED	1	4	6	1
ZCCHC6 WILD-TYPE	32	74	45	86

Figure S1038. Get High-res Image Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0347 (Fisher's exact test), Q value = 0.11

Table S2093. Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZCCHC6 MUTATED	7	1	2	1	0
ZCCHC6 WILD-TYPE	58	58	40	33	57

Figure S1039. Get High-res Image Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S2094. Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZCCHC6 MUTATED	3	0	0	4	2	0	2
ZCCHC6 WILD-TYPE	33	21	48	52	37	37	18

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0024

Table S2095. Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZCCHC6 MUTATED	13	0	0
ZCCHC6 WILD-TYPE	113	96	67

Figure S1040. Get High-res Image Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00118 (Fisher's exact test), Q value = 0.014

Table S2096. Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZCCHC6 MUTATED	7	6	0	0
ZCCHC6 WILD-TYPE	49	99	60	68

Figure S1041. Get High-res Image Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.29

Table S2097. Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZCCHC6 MUTATED	1	1	6	1	0	0
ZCCHC6 WILD-TYPE	33	17	53	37	19	43

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.24

Table S2098. Gene #210: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZCCHC6 MUTATED	6	0	3
ZCCHC6 WILD-TYPE	116	51	35

'ITPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S2099. Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ITPR2 MUTATED	2	15	2	3	3
ITPR2 WILD-TYPE	77	111	25	40	9

Figure S1042. Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ITPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.1

Table S2100. Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ITPR2 MUTATED	2	10	4	2
ITPR2 WILD-TYPE	69	66	30	61

Figure S1043. Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ITPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00378 (Fisher's exact test), Q value = 0.029

Table S2101. Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ITPR2 MUTATED	11	1	8
ITPR2 WILD-TYPE	67	85	77

Figure S1044. Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ITPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S2102. Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ITPR2 MUTATED	2	4	13	1
ITPR2 WILD-TYPE	31	74	38	86

Figure S1045. Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.0066

Table S2103. Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ITPR2 MUTATED	14	1	3	3	1
ITPR2 WILD-TYPE	51	58	39	31	56

Figure S1046. Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.07

Table S2104. Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ITPR2 MUTATED	3	3	0	8	3	1	4
ITPR2 WILD-TYPE	33	18	48	48	36	36	16

Figure S1047. Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.007

Table S2105. Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ITPR2 MUTATED	20	2	3
ITPR2 WILD-TYPE	106	94	64

Figure S1048. Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 7e-04 (Fisher's exact test), Q value = 0.01

Table S2106. Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ITPR2 MUTATED	13	8	2	2
ITPR2 WILD-TYPE	43	97	58	66

Figure S1049. Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.48

Table S2107. Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ITPR2 MUTATED	2	1	7	4	0	1
ITPR2 WILD-TYPE	32	17	52	34	19	42

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.055

Table S2108. Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ITPR2 MUTATED	7	1	7
ITPR2 WILD-TYPE	115	50	31

Figure S1050. Get High-res Image Gene #211: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0032

Table S2109. Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MLL3 MUTATED	4	28	3	4	6
MLL3 WILD-TYPE	75	98	24	39	6

Figure S1051. Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S2110. Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MLL3 MUTATED	3	21	6	2
MLL3 WILD-TYPE	68	55	28	61

Figure S1052. Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0043

Table S2111. Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MLL3 MUTATED	22	4	15
MLL3 WILD-TYPE	56	82	70

Figure S1053. Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.011

Table S2112. Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MLL3 MUTATED	4	12	18	7
MLL3 WILD-TYPE	29	66	33	80

Figure S1054. Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.0084

Table S2113. Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MLL3 MUTATED	18	5	10	7	2
MLL3 WILD-TYPE	47	54	32	27	55

Figure S1055. Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S2114. Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MLL3 MUTATED	8	1	1	14	6	2	10
MLL3 WILD-TYPE	28	20	47	42	33	35	10

Figure S1056. Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S2115. Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MLL3 MUTATED	34	7	4
MLL3 WILD-TYPE	92	89	63

Figure S1057. Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S2116. Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MLL3 MUTATED	20	18	4	3
MLL3 WILD-TYPE	36	87	56	65

Figure S1058. Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.092

Table S2117. Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MLL3 MUTATED	5	3	6	10	0	2
MLL3 WILD-TYPE	29	15	53	28	19	41

Figure S1059. Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00438 (Fisher's exact test), Q value = 0.031

Table S2118. Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MLL3 MUTATED	16	1	9
MLL3 WILD-TYPE	106	50	29

Figure S1060. Get High-res Image Gene #212: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDK12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.26

Table S2119. Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDK12 MUTATED	2	13	2	1	0
CDK12 WILD-TYPE	77	113	25	42	12

'CDK12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.051 (Fisher's exact test), Q value = 0.14

Table S2120. Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDK12 MUTATED	1	8	4	3
CDK12 WILD-TYPE	70	68	30	60

'CDK12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.29

Table S2121. Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CDK12 MUTATED	9	4	4
CDK12 WILD-TYPE	69	82	81

'CDK12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00307 (Fisher's exact test), Q value = 0.026

Table S2122. Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CDK12 MUTATED	7	2	5	3
CDK12 WILD-TYPE	26	76	46	84

Figure S1061. Get High-res Image Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDK12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00105 (Fisher's exact test), Q value = 0.013

Table S2123. Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CDK12 MUTATED	11	1	0	1	2
CDK12 WILD-TYPE	54	58	42	33	55

Figure S1062. Get High-res Image Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDK12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0322 (Fisher's exact test), Q value = 0.1

Table S2124. Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CDK12 MUTATED	5	2	0	2	2	1	3
CDK12 WILD-TYPE	31	19	48	54	37	36	17

Figure S1063. Get High-res Image Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDK12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.1

Table S2125. Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CDK12 MUTATED	14	3	2
CDK12 WILD-TYPE	112	93	65

Figure S1064. Get High-res Image Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDK12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.076 (Fisher's exact test), Q value = 0.17

Table S2126. Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CDK12 MUTATED	8	7	2	2
CDK12 WILD-TYPE	48	98	58	66

'CDK12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.1

Table S2127. Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CDK12 MUTATED	4	1	8	1	0	0
CDK12 WILD-TYPE	30	17	51	37	19	43

Figure S1065. Get High-res Image Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDK12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 0.81

Table S2128. Gene #213: 'CDK12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CDK12 MUTATED	9	2	3
CDK12 WILD-TYPE	113	49	35

'PODN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.44

Table S2129. Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PODN MUTATED	1	9	1	1	0
PODN WILD-TYPE	78	117	26	42	12

'PODN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.42

Table S2130. Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PODN MUTATED	2	6	1	1
PODN WILD-TYPE	69	70	33	62

'PODN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.27

Table S2131. Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PODN MUTATED	7	2	3
PODN WILD-TYPE	71	84	82

'PODN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.27

Table S2132. Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PODN MUTATED	0	2	5	5
PODN WILD-TYPE	33	76	46	82

'PODN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S2133. Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PODN MUTATED	6	1	3	1	1
PODN WILD-TYPE	59	58	39	33	56

'PODN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.52

Table S2134. Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PODN MUTATED	2	1	0	4	2	1	2
PODN WILD-TYPE	34	20	48	52	37	36	18

'PODN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.29

Table S2135. Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PODN MUTATED	9	3	1
PODN WILD-TYPE	117	93	66

'PODN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.412 (Fisher's exact test), Q value = 0.53

Table S2136. Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PODN MUTATED	3	7	2	1
PODN WILD-TYPE	53	98	58	67

'PODN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.45

Table S2137. Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PODN MUTATED	1	2	4	2	1	0
PODN WILD-TYPE	33	16	55	36	18	43

'PODN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.74

Table S2138. Gene #214: 'PODN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PODN MUTATED	7	1	2
PODN WILD-TYPE	115	50	36

'AKNAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.28

Table S2139. Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AKNAD1 MUTATED	3	11	2	0	1
AKNAD1 WILD-TYPE	76	115	25	43	11

'AKNAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.15

Table S2140. Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AKNAD1 MUTATED	2	7	4	1
AKNAD1 WILD-TYPE	69	69	30	62

'AKNAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.091

Table S2141. Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
AKNAD1 MUTATED	9	2	3
AKNAD1 WILD-TYPE	69	84	82

Figure S1066. Get High-res Image Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'AKNAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.063

Table S2142. Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
AKNAD1 MUTATED	5	2	5	2
AKNAD1 WILD-TYPE	28	76	46	85

Figure S1067. Get High-res Image Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AKNAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00849 (Fisher's exact test), Q value = 0.047

Table S2143. Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
AKNAD1 MUTATED	11	1	1	1	3
AKNAD1 WILD-TYPE	54	58	41	33	54

Figure S1068. Get High-res Image Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AKNAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.055

Table S2144. Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
AKNAD1 MUTATED	2	2	0	3	4	1	5
AKNAD1 WILD-TYPE	34	19	48	53	35	36	15

Figure S1069. Get High-res Image Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AKNAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.11

Table S2145. Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
AKNAD1 MUTATED	13	2	3
AKNAD1 WILD-TYPE	113	94	64

Figure S1070. Get High-res Image Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AKNAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 0.1

Table S2146. Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
AKNAD1 MUTATED	8	7	1	2
AKNAD1 WILD-TYPE	48	98	59	66

Figure S1071. Get High-res Image Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AKNAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S2147. Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
AKNAD1 MUTATED	4	0	5	3	0	0
AKNAD1 WILD-TYPE	30	18	54	35	19	43

'AKNAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0843 (Fisher's exact test), Q value = 0.18

Table S2148. Gene #215: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
AKNAD1 MUTATED	9	0	3
AKNAD1 WILD-TYPE	113	51	35

'ERBB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.088

Table S2149. Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ERBB3 MUTATED	3	21	1	4	2
ERBB3 WILD-TYPE	76	105	26	39	10

Figure S1072. Get High-res Image Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ERBB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0878 (Fisher's exact test), Q value = 0.19

Table S2150. Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ERBB3 MUTATED	3	11	5	4
ERBB3 WILD-TYPE	68	65	29	59

'ERBB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.0077

Table S2151. Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ERBB3 MUTATED	17	3	6
ERBB3 WILD-TYPE	61	83	79

Figure S1073. Get High-res Image Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ERBB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.033 (Fisher's exact test), Q value = 0.1

Table S2152. Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ERBB3 MUTATED	4	5	11	6
ERBB3 WILD-TYPE	29	73	40	81

Figure S1074. Get High-res Image Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S2153. Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ERBB3 MUTATED	10	7	3	2	5
ERBB3 WILD-TYPE	55	52	39	32	52

'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.07

Table S2154. Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ERBB3 MUTATED	6	2	2	8	2	1	6
ERBB3 WILD-TYPE	30	19	46	48	37	36	14

Figure S1075. Get High-res Image Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0995 (Fisher's exact test), Q value = 0.21

Table S2155. Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ERBB3 MUTATED	19	6	6
ERBB3 WILD-TYPE	107	90	61

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 0.45

Table S2156. Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ERBB3 MUTATED	10	10	5	6
ERBB3 WILD-TYPE	46	95	55	62

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.3

Table S2157. Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ERBB3 MUTATED	1	3	6	7	2	2
ERBB3 WILD-TYPE	33	15	53	31	17	41

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.3

Table S2158. Gene #216: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ERBB3 MUTATED	16	2	3
ERBB3 WILD-TYPE	106	49	35

'RSF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.47

Table S2159. Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RSF1 MUTATED	3	11	0	2	1
RSF1 WILD-TYPE	76	115	27	41	11

'RSF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 0.2

Table S2160. Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RSF1 MUTATED	4	5	3	0
RSF1 WILD-TYPE	67	71	31	63

'RSF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.11

Table S2161. Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RSF1 MUTATED	10	3	3
RSF1 WILD-TYPE	68	83	82

Figure S1076. Get High-res Image Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RSF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00307 (Fisher's exact test), Q value = 0.026

Table S2162. Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RSF1 MUTATED	5	1	7	3
RSF1 WILD-TYPE	28	77	44	84

Figure S1077. Get High-res Image Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RSF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.11

Table S2163. Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RSF1 MUTATED	9	1	3	2	1
RSF1 WILD-TYPE	56	58	39	32	56

Figure S1078. Get High-res Image Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RSF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0251 (Fisher's exact test), Q value = 0.089

Table S2164. Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RSF1 MUTATED	1	0	1	5	3	1	5
RSF1 WILD-TYPE	35	21	47	51	36	36	15

Figure S1079. Get High-res Image Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RSF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 0.087

Table S2165. Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RSF1 MUTATED	13	3	1
RSF1 WILD-TYPE	113	93	66

Figure S1080. Get High-res Image Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RSF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.061

Table S2166. Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RSF1 MUTATED	9	4	2	2
RSF1 WILD-TYPE	47	101	58	66

Figure S1081. Get High-res Image Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.31

Table S2167. Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RSF1 MUTATED	1	2	5	2	0	0
RSF1 WILD-TYPE	33	16	54	36	19	43

'RSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0534 (Fisher's exact test), Q value = 0.14

Table S2168. Gene #217: 'RSF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RSF1 MUTATED	6	0	4
RSF1 WILD-TYPE	116	51	34

'KBTBD10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.16

Table S2169. Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KBTBD10 MUTATED	1	4	0	0	2
KBTBD10 WILD-TYPE	78	122	27	43	10

'KBTBD10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 0.15

Table S2170. Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KBTBD10 MUTATED	1	5	0	0
KBTBD10 WILD-TYPE	70	71	34	63

'KBTBD10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.29

Table S2171. Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KBTBD10 MUTATED	3	0	2
KBTBD10 WILD-TYPE	75	86	83

'KBTBD10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.62

Table S2172. Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KBTBD10 MUTATED	1	1	2	1
KBTBD10 WILD-TYPE	32	77	49	86

'KBTBD10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.54

Table S2173. Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KBTBD10 MUTATED	3	0	2	1	1
KBTBD10 WILD-TYPE	62	59	40	33	56

'KBTBD10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.53

Table S2174. Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KBTBD10 MUTATED	0	0	0	3	2	1	1
KBTBD10 WILD-TYPE	36	21	48	53	37	36	19

'KBTBD10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.54

Table S2175. Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KBTBD10 MUTATED	5	1	1
KBTBD10 WILD-TYPE	121	95	66

'KBTBD10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.39

Table S2176. Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KBTBD10 MUTATED	3	3	0	1
KBTBD10 WILD-TYPE	53	102	60	67

'KBTBD10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S2177. Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KBTBD10 MUTATED	2	0	1	2	0	0
KBTBD10 WILD-TYPE	32	18	58	36	19	43

'KBTBD10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.41

Table S2178. Gene #218: 'KBTBD10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KBTBD10 MUTATED	3	0	2
KBTBD10 WILD-TYPE	119	51	36

'OSBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 0.12

Table S2179. Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OSBP2 MUTATED	0	10	0	1	0
OSBP2 WILD-TYPE	79	116	27	42	12

Figure S1082. Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OSBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.11

Table S2180. Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OSBP2 MUTATED	1	6	2	0
OSBP2 WILD-TYPE	70	70	32	63

Figure S1083. Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OSBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00055 (Fisher's exact test), Q value = 0.0089

Table S2181. Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OSBP2 MUTATED	8	1	0
OSBP2 WILD-TYPE	70	85	85

Figure S1084. Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OSBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0251 (Fisher's exact test), Q value = 0.089

Table S2182. Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OSBP2 MUTATED	2	1	5	1
OSBP2 WILD-TYPE	31	77	46	86

Figure S1085. Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.063

Table S2183. Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OSBP2 MUTATED	7	1	2	0	0
OSBP2 WILD-TYPE	58	58	40	34	57

Figure S1086. Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OSBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00614 (Fisher's exact test), Q value = 0.038

Table S2184. Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OSBP2 MUTATED	1	0	0	4	1	0	4
OSBP2 WILD-TYPE	35	21	48	52	38	37	16

Figure S1087. Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00387 (Fisher's exact test), Q value = 0.029

Table S2185. Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OSBP2 MUTATED	10	0	1
OSBP2 WILD-TYPE	116	96	66

Figure S1088. Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 0.077

Table S2186. Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OSBP2 MUTATED	6	4	0	1
OSBP2 WILD-TYPE	50	101	60	67

Figure S1089. Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.35

Table S2187. Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OSBP2 MUTATED	1	2	3	3	0	0
OSBP2 WILD-TYPE	33	16	56	35	19	43

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.13

Table S2188. Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OSBP2 MUTATED	5	0	4
OSBP2 WILD-TYPE	117	51	34

Figure S1090. Get High-res Image Gene #219: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EBF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.45

Table S2189. Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EBF3 MUTATED	1	9	1	1	0
EBF3 WILD-TYPE	78	117	26	42	12

'EBF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00254 (Fisher's exact test), Q value = 0.023

Table S2190. Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EBF3 MUTATED	0	9	2	1
EBF3 WILD-TYPE	71	67	32	62

Figure S1091. Get High-res Image Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EBF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0983 (Fisher's exact test), Q value = 0.2

Table S2191. Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EBF3 MUTATED	6	1	3
EBF3 WILD-TYPE	72	85	82

'EBF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00407 (Fisher's exact test), Q value = 0.03

Table S2192. Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EBF3 MUTATED	0	1	7	2
EBF3 WILD-TYPE	33	77	44	85

Figure S1092. Get High-res Image Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EBF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00857 (Fisher's exact test), Q value = 0.048

Table S2193. Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EBF3 MUTATED	7	1	0	2	0
EBF3 WILD-TYPE	58	58	42	32	57

Figure S1093. Get High-res Image Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EBF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.033 (Fisher's exact test), Q value = 0.1

Table S2194. Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EBF3 MUTATED	1	0	1	1	4	0	3
EBF3 WILD-TYPE	35	21	47	55	35	37	17

Figure S1094. Get High-res Image Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EBF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 0.12

Table S2195. Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EBF3 MUTATED	9	3	0
EBF3 WILD-TYPE	117	93	67

Figure S1095. Get High-res Image Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EBF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00056 (Fisher's exact test), Q value = 0.009

Table S2196. Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EBF3 MUTATED	8	2	2	0
EBF3 WILD-TYPE	48	103	58	68

Figure S1096. Get High-res Image Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EBF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S2197. Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EBF3 MUTATED	3	0	3	3	0	1
EBF3 WILD-TYPE	31	18	56	35	19	42

'EBF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.55

Table S2198. Gene #220: 'EBF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EBF3 MUTATED	6	1	3
EBF3 WILD-TYPE	116	50	35

'LRP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00371 (Fisher's exact test), Q value = 0.029

Table S2199. Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LRP1 MUTATED	2	23	2	3	0
LRP1 WILD-TYPE	77	103	25	40	12

Figure S1097. Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00297 (Fisher's exact test), Q value = 0.026

Table S2200. Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LRP1 MUTATED	2	15	3	3
LRP1 WILD-TYPE	69	61	31	60

Figure S1098. Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0039

Table S2201. Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LRP1 MUTATED	19	5	4
LRP1 WILD-TYPE	59	81	81

Figure S1099. Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LRP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00056 (Fisher's exact test), Q value = 0.009

Table S2202. Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LRP1 MUTATED	5	4	14	5
LRP1 WILD-TYPE	28	74	37	82

Figure S1100. Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LRP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00122 (Fisher's exact test), Q value = 0.015

Table S2203. Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LRP1 MUTATED	13	2	3	6	1
LRP1 WILD-TYPE	52	57	39	28	56

Figure S1101. Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LRP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0045

Table S2204. Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LRP1 MUTATED	5	0	1	4	6	1	8
LRP1 WILD-TYPE	31	21	47	52	33	36	12

Figure S1102. Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.011

Table S2205. Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LRP1 MUTATED	23	4	3
LRP1 WILD-TYPE	103	92	64

Figure S1103. Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LRP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.0091

Table S2206. Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LRP1 MUTATED	13	13	2	2
LRP1 WILD-TYPE	43	92	58	66

Figure S1104. Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.34

Table S2207. Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LRP1 MUTATED	2	3	7	6	0	2
LRP1 WILD-TYPE	32	15	52	32	19	41

'LRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 0.094

Table S2208. Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LRP1 MUTATED	10	2	8
LRP1 WILD-TYPE	112	49	30

Figure S1105. Get High-res Image Gene #221: 'LRP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHKB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0743 (Fisher's exact test), Q value = 0.17

Table S2209. Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PHKB MUTATED	0	3	2	1	1
PHKB WILD-TYPE	79	123	25	42	11

'PHKB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00393 (Fisher's exact test), Q value = 0.03

Table S2210. Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PHKB MUTATED	0	6	0	0
PHKB WILD-TYPE	71	70	34	63

Figure S1106. Get High-res Image Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHKB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.12

Table S2211. Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PHKB MUTATED	4	1	0
PHKB WILD-TYPE	74	85	85

Figure S1107. Get High-res Image Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PHKB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.078

Table S2212. Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PHKB MUTATED	0	0	4	1
PHKB WILD-TYPE	33	78	47	86

Figure S1108. Get High-res Image Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHKB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0927 (Fisher's exact test), Q value = 0.2

Table S2213. Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PHKB MUTATED	5	1	1	0	0
PHKB WILD-TYPE	60	58	41	34	57

'PHKB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.12

Table S2214. Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PHKB MUTATED	0	0	1	1	2	0	3
PHKB WILD-TYPE	36	21	47	55	37	37	17

Figure S1109. Get High-res Image Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PHKB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 0.18

Table S2215. Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PHKB MUTATED	6	1	0
PHKB WILD-TYPE	120	95	67

'PHKB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0093 (Fisher's exact test), Q value = 0.05

Table S2216. Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PHKB MUTATED	5	1	1	0
PHKB WILD-TYPE	51	104	59	68

Figure S1110. Get High-res Image Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PHKB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.56

Table S2217. Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PHKB MUTATED	1	2	1	1	0	1
PHKB WILD-TYPE	33	16	58	37	19	42

'PHKB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S2218. Gene #222: 'PHKB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PHKB MUTATED	2	1	3
PHKB WILD-TYPE	120	50	35

'ABCB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.15

Table S2219. Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ABCB6 MUTATED	0	8	0	0	0
ABCB6 WILD-TYPE	79	118	27	43	12

'ABCB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.31

Table S2220. Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ABCB6 MUTATED	0	4	1	1
ABCB6 WILD-TYPE	71	72	33	62

'ABCB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.013

Table S2221. Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ABCB6 MUTATED	7	0	1
ABCB6 WILD-TYPE	71	86	84

Figure S1111. Get High-res Image Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ABCB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S2222. Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ABCB6 MUTATED	3	2	2	1
ABCB6 WILD-TYPE	30	76	49	86

'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0983 (Fisher's exact test), Q value = 0.2

Table S2223. Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ABCB6 MUTATED	4	0	1	1	0
ABCB6 WILD-TYPE	61	59	41	33	57

'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.57

Table S2224. Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ABCB6 MUTATED	2	1	0	2	1	0	0
ABCB6 WILD-TYPE	34	20	48	54	38	37	20

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.15

Table S2225. Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ABCB6 MUTATED	7	1	0
ABCB6 WILD-TYPE	119	95	67

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0272 (Fisher's exact test), Q value = 0.093

Table S2226. Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ABCB6 MUTATED	5	2	0	1
ABCB6 WILD-TYPE	51	103	60	67

Figure S1112. Get High-res Image Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S2227. Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ABCB6 MUTATED	0	0	5	1	0	0
ABCB6 WILD-TYPE	34	18	54	37	19	43

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.43

Table S2228. Gene #223: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ABCB6 MUTATED	4	0	2
ABCB6 WILD-TYPE	118	51	36

'DNAJC18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00946 (Fisher's exact test), Q value = 0.05

Table S2229. Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DNAJC18 MUTATED	0	11	1	0	1
DNAJC18 WILD-TYPE	79	115	26	43	11

Figure S1113. Get High-res Image Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAJC18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00106 (Fisher's exact test), Q value = 0.013

Table S2230. Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DNAJC18 MUTATED	0	6	4	0
DNAJC18 WILD-TYPE	71	70	30	63

Figure S1114. Get High-res Image Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAJC18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.51

Table S2231. Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DNAJC18 MUTATED	5	2	3
DNAJC18 WILD-TYPE	73	84	82

'DNAJC18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0757 (Fisher's exact test), Q value = 0.17

Table S2232. Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DNAJC18 MUTATED	3	1	4	2
DNAJC18 WILD-TYPE	30	77	47	85

'DNAJC18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.15

Table S2233. Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DNAJC18 MUTATED	7	3	1	1	0
DNAJC18 WILD-TYPE	58	56	41	33	57

'DNAJC18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 0.14

Table S2234. Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DNAJC18 MUTATED	2	1	1	5	0	0	3
DNAJC18 WILD-TYPE	34	20	47	51	39	37	17

'DNAJC18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.43

Table S2235. Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DNAJC18 MUTATED	8	2	3
DNAJC18 WILD-TYPE	118	94	64

'DNAJC18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 0.8

Table S2236. Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DNAJC18 MUTATED	4	5	2	2
DNAJC18 WILD-TYPE	52	100	58	66

'DNAJC18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.073

Table S2237. Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DNAJC18 MUTATED	0	3	1	4	0	1
DNAJC18 WILD-TYPE	34	15	58	34	19	42

Figure S1115. Get High-res Image Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DNAJC18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S2238. Gene #224: 'DNAJC18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DNAJC18 MUTATED	4	1	4
DNAJC18 WILD-TYPE	118	50	34

'IDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.32

Table S2239. Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IDH2 MUTATED	0	3	0	0	1
IDH2 WILD-TYPE	79	123	27	43	11

'IDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.63

Table S2240. Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IDH2 MUTATED	0	2	1	1
IDH2 WILD-TYPE	71	74	33	62

'IDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.43

Table S2241. Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IDH2 MUTATED	2	1	0
IDH2 WILD-TYPE	76	85	85

'IDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S2242. Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IDH2 MUTATED	1	0	1	1
IDH2 WILD-TYPE	32	78	50	86

'IDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.47

Table S2243. Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IDH2 MUTATED	2	0	1	1	0
IDH2 WILD-TYPE	63	59	41	33	57

'IDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 0.62

Table S2244. Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IDH2 MUTATED	2	0	0	1	1	0	0
IDH2 WILD-TYPE	34	21	48	55	38	37	20

'IDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.47

Table S2245. Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IDH2 MUTATED	3	0	1
IDH2 WILD-TYPE	123	96	66

'IDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.37

Table S2246. Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IDH2 MUTATED	2	2	0	0
IDH2 WILD-TYPE	54	103	60	68

'IDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.59

Table S2247. Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IDH2 MUTATED	1	0	1	0	1	0
IDH2 WILD-TYPE	33	18	58	38	18	43

'IDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.66

Table S2248. Gene #225: 'IDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IDH2 MUTATED	2	0	1
IDH2 WILD-TYPE	120	51	37

'DLGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.35

Table S2249. Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DLGAP3 MUTATED	2	10	0	4	0
DLGAP3 WILD-TYPE	77	116	27	39	12

'DLGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00614 (Fisher's exact test), Q value = 0.038

Table S2250. Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DLGAP3 MUTATED	1	11	1	2
DLGAP3 WILD-TYPE	70	65	33	61

Figure S1116. Get High-res Image Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DLGAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0328 (Fisher's exact test), Q value = 0.1

Table S2251. Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DLGAP3 MUTATED	8	4	1
DLGAP3 WILD-TYPE	70	82	84

Figure S1117. Get High-res Image Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DLGAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.28

Table S2252. Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DLGAP3 MUTATED	3	2	5	3
DLGAP3 WILD-TYPE	30	76	46	84

'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S2253. Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DLGAP3 MUTATED	8	1	1	2	3
DLGAP3 WILD-TYPE	57	58	41	32	54

'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.51

Table S2254. Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DLGAP3 MUTATED	3	0	1	3	3	2	3
DLGAP3 WILD-TYPE	33	21	47	53	36	35	17

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.14

Table S2255. Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DLGAP3 MUTATED	12	2	2
DLGAP3 WILD-TYPE	114	94	65

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00461 (Fisher's exact test), Q value = 0.032

Table S2256. Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DLGAP3 MUTATED	9	4	2	1
DLGAP3 WILD-TYPE	47	101	58	67

Figure S1118. Get High-res Image Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.39

Table S2257. Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DLGAP3 MUTATED	3	2	3	5	0	1
DLGAP3 WILD-TYPE	31	16	56	33	19	42

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.34

Table S2258. Gene #226: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DLGAP3 MUTATED	7	2	5
DLGAP3 WILD-TYPE	115	49	33

'KIAA0240 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.21

Table S2259. Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA0240 MUTATED	1	9	1	0	1
KIAA0240 WILD-TYPE	78	117	26	43	11

'KIAA0240 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.67

Table S2260. Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA0240 MUTATED	1	3	2	3
KIAA0240 WILD-TYPE	70	73	32	60

'KIAA0240 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00342 (Fisher's exact test), Q value = 0.027

Table S2261. Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA0240 MUTATED	7	0	2
KIAA0240 WILD-TYPE	71	86	83

Figure S1119. Get High-res Image Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA0240 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.24

Table S2262. Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA0240 MUTATED	2	2	4	1
KIAA0240 WILD-TYPE	31	76	47	86

'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.2

Table S2263. Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA0240 MUTATED	5	0	3	2	1
KIAA0240 WILD-TYPE	60	59	39	32	56

'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00878 (Fisher's exact test), Q value = 0.048

Table S2264. Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA0240 MUTATED	2	0	0	4	1	0	4
KIAA0240 WILD-TYPE	34	21	48	52	38	37	16

Figure S1120. Get High-res Image Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.38

Table S2265. Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA0240 MUTATED	8	3	1
KIAA0240 WILD-TYPE	118	93	66

'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.59

Table S2266. Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA0240 MUTATED	4	5	1	2
KIAA0240 WILD-TYPE	52	100	59	66

'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.57

Table S2267. Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA0240 MUTATED	1	0	2	4	0	1
KIAA0240 WILD-TYPE	33	18	57	34	19	42

'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.77

Table S2268. Gene #227: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA0240 MUTATED	5	1	2
KIAA0240 WILD-TYPE	117	50	36

'ATXN2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.069

Table S2269. Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATXN2L MUTATED	2	14	0	0	0
ATXN2L WILD-TYPE	77	112	27	43	12

Figure S1121. Get High-res Image Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATXN2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00251 (Fisher's exact test), Q value = 0.023

Table S2270. Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATXN2L MUTATED	0	10	1	2
ATXN2L WILD-TYPE	71	66	33	61

Figure S1122. Get High-res Image Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATXN2L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.2

Table S2271. Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ATXN2L MUTATED	8	2	4
ATXN2L WILD-TYPE	70	84	81

'ATXN2L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00107 (Fisher's exact test), Q value = 0.014

Table S2272. Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ATXN2L MUTATED	1	3	9	1
ATXN2L WILD-TYPE	32	75	42	86

Figure S1123. Get High-res Image Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATXN2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00558 (Fisher's exact test), Q value = 0.036

Table S2273. Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ATXN2L MUTATED	10	3	1	2	0
ATXN2L WILD-TYPE	55	56	41	32	57

Figure S1124. Get High-res Image Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATXN2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0044

Table S2274. Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ATXN2L MUTATED	2	0	1	2	4	0	7
ATXN2L WILD-TYPE	34	21	47	54	35	37	13

Figure S1125. Get High-res Image Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.035

Table S2275. Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ATXN2L MUTATED	14	2	1
ATXN2L WILD-TYPE	112	94	66

Figure S1126. Get High-res Image Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.0055

Table S2276. Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ATXN2L MUTATED	11	3	1	2
ATXN2L WILD-TYPE	45	102	59	66

Figure S1127. Get High-res Image Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.47

Table S2277. Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ATXN2L MUTATED	1	0	4	5	1	1
ATXN2L WILD-TYPE	33	18	55	33	18	42

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.34

Table S2278. Gene #228: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ATXN2L MUTATED	7	1	4
ATXN2L WILD-TYPE	115	50	34

'ZNF608 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00191 (Fisher's exact test), Q value = 0.019

Table S2279. Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF608 MUTATED	0	13	0	0	1
ZNF608 WILD-TYPE	79	113	27	43	11

Figure S1128. Get High-res Image Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF608 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.012

Table S2280. Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF608 MUTATED	0	8	1	0
ZNF608 WILD-TYPE	71	68	33	63

Figure S1129. Get High-res Image Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF608 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00446 (Fisher's exact test), Q value = 0.032

Table S2281. Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZNF608 MUTATED	10	1	3
ZNF608 WILD-TYPE	68	85	82

Figure S1130. Get High-res Image Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF608 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00298 (Fisher's exact test), Q value = 0.026

Table S2282. Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZNF608 MUTATED	4	1	7	2
ZNF608 WILD-TYPE	29	77	44	85

Figure S1131. Get High-res Image Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00984 (Fisher's exact test), Q value = 0.051

Table S2283. Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF608 MUTATED	8	3	1	0	0
ZNF608 WILD-TYPE	57	56	41	34	57

Figure S1132. Get High-res Image Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.27

Table S2284. Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF608 MUTATED	3	0	1	3	2	0	3
ZNF608 WILD-TYPE	33	21	47	53	37	37	17

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.055

Table S2285. Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF608 MUTATED	12	1	2
ZNF608 WILD-TYPE	114	95	65

Figure S1133. Get High-res Image Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S2286. Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF608 MUTATED	11	2	1	1
ZNF608 WILD-TYPE	45	103	59	67

Figure S1134. Get High-res Image Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.5

Table S2287. Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZNF608 MUTATED	3	1	3	2	0	0
ZNF608 WILD-TYPE	31	17	56	36	19	43

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.24

Table S2288. Gene #229: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZNF608 MUTATED	6	0	3
ZNF608 WILD-TYPE	116	51	35

'KIAA0406 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.57

Table S2289. Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA0406 MUTATED	1	8	1	2	0
KIAA0406 WILD-TYPE	78	118	26	41	12

'KIAA0406 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.074

Table S2290. Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA0406 MUTATED	1	7	1	0
KIAA0406 WILD-TYPE	70	69	33	63

Figure S1135. Get High-res Image Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0406 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.15

Table S2291. Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA0406 MUTATED	7	3	1
KIAA0406 WILD-TYPE	71	83	84

'KIAA0406 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00115 (Fisher's exact test), Q value = 0.014

Table S2292. Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA0406 MUTATED	0	0	7	4
KIAA0406 WILD-TYPE	33	78	44	83

Figure S1136. Get High-res Image Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0849 (Fisher's exact test), Q value = 0.19

Table S2293. Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA0406 MUTATED	7	1	1	0	2
KIAA0406 WILD-TYPE	58	58	41	34	55

'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S2294. Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA0406 MUTATED	2	1	0	2	2	1	3
KIAA0406 WILD-TYPE	34	20	48	54	37	36	17

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S2295. Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA0406 MUTATED	9	2	1
KIAA0406 WILD-TYPE	117	94	66

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.069

Table S2296. Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA0406 MUTATED	6	5	1	0
KIAA0406 WILD-TYPE	50	100	59	68

Figure S1137. Get High-res Image Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.27

Table S2297. Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA0406 MUTATED	3	2	2	1	0	0
KIAA0406 WILD-TYPE	31	16	57	37	19	43

'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.087

Table S2298. Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA0406 MUTATED	4	0	4
KIAA0406 WILD-TYPE	118	51	34

Figure S1138. Get High-res Image Gene #230: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S2299. Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1967 MUTATED	0	14	0	0	3
KIAA1967 WILD-TYPE	79	112	27	43	9

Figure S1139. Get High-res Image Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1967 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0044

Table S2300. Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1967 MUTATED	0	10	2	0
KIAA1967 WILD-TYPE	71	66	32	63

Figure S1140. Get High-res Image Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1967 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0694 (Fisher's exact test), Q value = 0.16

Table S2301. Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA1967 MUTATED	9	3	3
KIAA1967 WILD-TYPE	69	83	82

'KIAA1967 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0045

Table S2302. Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA1967 MUTATED	6	3	6	0
KIAA1967 WILD-TYPE	27	75	45	87

Figure S1141. Get High-res Image Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S2303. Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA1967 MUTATED	12	1	0	2	0
KIAA1967 WILD-TYPE	53	58	42	32	57

Figure S1142. Get High-res Image Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S2304. Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA1967 MUTATED	2	0	0	4	1	0	8
KIAA1967 WILD-TYPE	34	21	48	52	38	37	12

Figure S1143. Get High-res Image Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00372 (Fisher's exact test), Q value = 0.029

Table S2305. Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA1967 MUTATED	14	1	2
KIAA1967 WILD-TYPE	112	95	65

Figure S1144. Get High-res Image Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S2306. Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA1967 MUTATED	12	4	1	0
KIAA1967 WILD-TYPE	44	101	59	68

Figure S1145. Get High-res Image Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.65

Table S2307. Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA1967 MUTATED	1	2	3	3	0	1
KIAA1967 WILD-TYPE	33	16	56	35	19	42

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.3

Table S2308. Gene #231: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA1967 MUTATED	5	1	4
KIAA1967 WILD-TYPE	117	50	34

'CBLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 0.51

Table S2309. Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CBLL1 MUTATED	1	4	0	0	1
CBLL1 WILD-TYPE	78	122	27	43	11

'CBLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.71

Table S2310. Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CBLL1 MUTATED	1	2	1	0
CBLL1 WILD-TYPE	70	74	33	63

'CBLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.45

Table S2311. Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CBLL1 MUTATED	1	1	4
CBLL1 WILD-TYPE	77	85	81

'CBLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.72

Table S2312. Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CBLL1 MUTATED	0	1	2	3
CBLL1 WILD-TYPE	33	77	49	84

'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.63

Table S2313. Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CBLL1 MUTATED	1	2	0	2	1
CBLL1 WILD-TYPE	64	57	42	32	56

'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.45

Table S2314. Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CBLL1 MUTATED	2	1	0	1	2	0	0
CBLL1 WILD-TYPE	34	20	48	55	37	37	20

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.6

Table S2315. Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CBLL1 MUTATED	3	3	0
CBLL1 WILD-TYPE	123	93	67

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.66

Table S2316. Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CBLL1 MUTATED	2	1	2	1
CBLL1 WILD-TYPE	54	104	58	67

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.69

Table S2317. Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CBLL1 MUTATED	0	1	1	0	0	1
CBLL1 WILD-TYPE	34	17	58	38	19	42

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.66

Table S2318. Gene #232: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CBLL1 MUTATED	2	0	1
CBLL1 WILD-TYPE	120	51	37

'TENC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.48

Table S2319. Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TENC1 MUTATED	1	7	1	1	1
TENC1 WILD-TYPE	78	119	26	42	11

'TENC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 0.83

Table S2320. Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TENC1 MUTATED	2	4	2	2
TENC1 WILD-TYPE	69	72	32	61

'TENC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S2321. Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TENC1 MUTATED	6	2	2
TENC1 WILD-TYPE	72	84	83

'TENC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0629 (Fisher's exact test), Q value = 0.15

Table S2322. Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TENC1 MUTATED	4	3	2	1
TENC1 WILD-TYPE	29	75	49	86

'TENC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.49

Table S2323. Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TENC1 MUTATED	5	3	1	0	1
TENC1 WILD-TYPE	60	56	41	34	56

'TENC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.4

Table S2324. Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TENC1 MUTATED	3	0	2	1	2	0	2
TENC1 WILD-TYPE	33	21	46	55	37	37	18

'TENC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.35

Table S2325. Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TENC1 MUTATED	7	1	3
TENC1 WILD-TYPE	119	95	64

'TENC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S2326. Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TENC1 MUTATED	4	4	0	3
TENC1 WILD-TYPE	52	101	60	65

'TENC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.11

Table S2327. Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TENC1 MUTATED	0	3	4	0	0	1
TENC1 WILD-TYPE	34	15	55	38	19	42

Figure S1146. Get High-res Image Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TENC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.77

Table S2328. Gene #233: 'TENC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TENC1 MUTATED	5	1	2
TENC1 WILD-TYPE	117	50	36

'C1QA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.42

Table S2329. Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C1QA MUTATED	0	5	0	0	0
C1QA WILD-TYPE	79	121	27	43	12

'C1QA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.47

Table S2330. Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C1QA MUTATED	0	3	1	1
C1QA WILD-TYPE	71	73	33	62

'C1QA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.43

Table S2331. Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C1QA MUTATED	2	1	0
C1QA WILD-TYPE	76	85	85

'C1QA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.53

Table S2332. Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C1QA MUTATED	1	0	1	1
C1QA WILD-TYPE	32	78	50	86

'C1QA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.23

Table S2333. Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C1QA MUTATED	3	0	0	1	0
C1QA WILD-TYPE	62	59	42	33	57

'C1QA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.25

Table S2334. Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C1QA MUTATED	1	0	0	0	2	0	1
C1QA WILD-TYPE	35	21	48	56	37	37	19

'C1QA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.43

Table S2335. Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C1QA MUTATED	4	1	0
C1QA WILD-TYPE	122	95	67

'C1QA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.56

Table S2336. Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C1QA MUTATED	2	2	1	0
C1QA WILD-TYPE	54	103	59	68

'C1QA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.77

Table S2337. Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C1QA MUTATED	1	0	2	2	0	0
C1QA WILD-TYPE	33	18	57	36	19	43

'C1QA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S2338. Gene #234: 'C1QA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C1QA MUTATED	2	1	2
C1QA WILD-TYPE	120	50	36

'PLAU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.22

Table S2339. Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLAU MUTATED	0	7	0	0	0
PLAU WILD-TYPE	79	119	27	43	12

'PLAU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.4

Table S2340. Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLAU MUTATED	0	3	0	1
PLAU WILD-TYPE	71	73	34	62

'PLAU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00273 (Fisher's exact test), Q value = 0.024

Table S2341. Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PLAU MUTATED	5	0	0
PLAU WILD-TYPE	73	86	85

Figure S1147. Get High-res Image Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PLAU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.0061

Table S2342. Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PLAU MUTATED	4	0	1	0
PLAU WILD-TYPE	29	78	50	87

Figure S1148. Get High-res Image Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLAU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.16

Table S2343. Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PLAU MUTATED	5	1	0	1	0
PLAU WILD-TYPE	60	58	42	33	57

'PLAU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.056

Table S2344. Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PLAU MUTATED	3	0	0	0	2	0	2
PLAU WILD-TYPE	33	21	48	56	37	37	18

Figure S1149. Get High-res Image Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLAU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.051

Table S2345. Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PLAU MUTATED	7	0	0
PLAU WILD-TYPE	119	96	67

Figure S1150. Get High-res Image Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLAU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00686 (Fisher's exact test), Q value = 0.041

Table S2346. Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PLAU MUTATED	5	2	0	0
PLAU WILD-TYPE	51	103	60	68

Figure S1151. Get High-res Image Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLAU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.65

Table S2347. Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PLAU MUTATED	0	0	3	1	0	0
PLAU WILD-TYPE	34	18	56	37	19	43

'PLAU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0436 (Fisher's exact test), Q value = 0.12

Table S2348. Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PLAU MUTATED	1	0	3
PLAU WILD-TYPE	121	51	35

Figure S1152. Get High-res Image Gene #235: 'PLAU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ALG10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.48

Table S2349. Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ALG10 MUTATED	1	7	1	1	1
ALG10 WILD-TYPE	78	119	26	42	11

'ALG10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.065

Table S2350. Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ALG10 MUTATED	0	7	1	1
ALG10 WILD-TYPE	71	69	33	62

Figure S1153. Get High-res Image Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ALG10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.3

Table S2351. Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ALG10 MUTATED	5	1	5
ALG10 WILD-TYPE	73	85	80

'ALG10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S2352. Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ALG10 MUTATED	2	4	4	1
ALG10 WILD-TYPE	31	74	47	86

'ALG10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 0.95

Table S2353. Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ALG10 MUTATED	4	2	1	1	2
ALG10 WILD-TYPE	61	57	41	33	55

'ALG10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.07

Table S2354. Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ALG10 MUTATED	2	1	0	1	1	1	4
ALG10 WILD-TYPE	34	20	48	55	38	36	16

Figure S1154. Get High-res Image Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALG10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S2355. Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ALG10 MUTATED	6	3	2
ALG10 WILD-TYPE	120	93	65

'ALG10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.046 (Fisher's exact test), Q value = 0.13

Table S2356. Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ALG10 MUTATED	6	3	1	1
ALG10 WILD-TYPE	50	102	59	67

Figure S1155. Get High-res Image Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ALG10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 0.8

Table S2357. Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ALG10 MUTATED	0	0	3	2	1	1
ALG10 WILD-TYPE	34	18	56	36	18	42

'ALG10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 0.92

Table S2358. Gene #236: 'ALG10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ALG10 MUTATED	5	1	1
ALG10 WILD-TYPE	117	50	37

'DAO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.61

Table S2359. Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DAO MUTATED	2	7	0	1	1
DAO WILD-TYPE	77	119	27	42	11

'DAO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 0.19

Table S2360. Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DAO MUTATED	1	7	1	1
DAO WILD-TYPE	70	69	33	62

'DAO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 0.87

Table S2361. Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DAO MUTATED	3	2	3
DAO WILD-TYPE	75	84	82

'DAO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 0.78

Table S2362. Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DAO MUTATED	1	2	3	2
DAO WILD-TYPE	32	76	48	85

'DAO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.53

Table S2363. Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DAO MUTATED	2	2	3	3	1
DAO WILD-TYPE	63	57	39	31	56

'DAO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.3

Table S2364. Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DAO MUTATED	0	1	1	4	3	0	2
DAO WILD-TYPE	36	20	47	52	36	37	18

'DAO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S2365. Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DAO MUTATED	6	3	2
DAO WILD-TYPE	120	93	65

'DAO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.57

Table S2366. Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DAO MUTATED	4	4	2	1
DAO WILD-TYPE	52	101	58	67

'DAO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.33

Table S2367. Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DAO MUTATED	1	3	2	1	0	1
DAO WILD-TYPE	33	15	57	37	19	42

'DAO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.4

Table S2368. Gene #237: 'DAO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DAO MUTATED	3	2	3
DAO WILD-TYPE	119	49	35

'CDKL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.37

Table S2369. Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDKL3 MUTATED	0	6	0	1	0
CDKL3 WILD-TYPE	79	120	27	42	12

'CDKL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.48

Table S2370. Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDKL3 MUTATED	0	3	1	2
CDKL3 WILD-TYPE	71	73	33	61

'CDKL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00936 (Fisher's exact test), Q value = 0.05

Table S2371. Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CDKL3 MUTATED	5	0	1
CDKL3 WILD-TYPE	73	86	84

Figure S1156. Get High-res Image Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDKL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.4

Table S2372. Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CDKL3 MUTATED	1	1	3	1
CDKL3 WILD-TYPE	32	77	48	86

'CDKL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.063

Table S2373. Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CDKL3 MUTATED	5	0	0	1	0
CDKL3 WILD-TYPE	60	59	42	33	57

Figure S1157. Get High-res Image Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDKL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.47

Table S2374. Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CDKL3 MUTATED	2	1	0	1	1	0	1
CDKL3 WILD-TYPE	34	20	48	55	38	37	19

'CDKL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 0.18

Table S2375. Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CDKL3 MUTATED	6	1	0
CDKL3 WILD-TYPE	120	95	67

'CDKL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0931 (Fisher's exact test), Q value = 0.2

Table S2376. Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CDKL3 MUTATED	3	4	0	0
CDKL3 WILD-TYPE	53	101	60	68

'CDKL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.53

Table S2377. Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CDKL3 MUTATED	0	1	3	1	0	0
CDKL3 WILD-TYPE	34	17	56	37	19	43

'CDKL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.57

Table S2378. Gene #238: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CDKL3 MUTATED	4	0	1
CDKL3 WILD-TYPE	118	51	37

'GLIPR1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.39

Table S2379. Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GLIPR1L2 MUTATED	1	6	2	0	0
GLIPR1L2 WILD-TYPE	78	120	25	43	12

'GLIPR1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.49

Table S2380. Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GLIPR1L2 MUTATED	1	4	2	1
GLIPR1L2 WILD-TYPE	70	72	32	62

'GLIPR1L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.4

Table S2381. Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GLIPR1L2 MUTATED	4	1	4
GLIPR1L2 WILD-TYPE	74	85	81

'GLIPR1L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0855 (Fisher's exact test), Q value = 0.19

Table S2382. Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GLIPR1L2 MUTATED	1	1	5	2
GLIPR1L2 WILD-TYPE	32	77	46	85

'GLIPR1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.063

Table S2383. Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GLIPR1L2 MUTATED	6	0	1	1	0
GLIPR1L2 WILD-TYPE	59	59	41	33	57

Figure S1158. Get High-res Image Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GLIPR1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.37

Table S2384. Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GLIPR1L2 MUTATED	2	1	0	2	3	0	0
GLIPR1L2 WILD-TYPE	34	20	48	54	36	37	20

'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.15

Table S2385. Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GLIPR1L2 MUTATED	8	2	0
GLIPR1L2 WILD-TYPE	118	94	67

'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.095

Table S2386. Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GLIPR1L2 MUTATED	6	2	1	1
GLIPR1L2 WILD-TYPE	50	103	59	67

Figure S1159. Get High-res Image Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 0.92

Table S2387. Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GLIPR1L2 MUTATED	2	1	3	1	0	1
GLIPR1L2 WILD-TYPE	32	17	56	37	19	42

'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0735 (Fisher's exact test), Q value = 0.17

Table S2388. Gene #239: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GLIPR1L2 MUTATED	3	1	4
GLIPR1L2 WILD-TYPE	119	50	34

'FZD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S2389. Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FZD3 MUTATED	1	9	0	0	0
FZD3 WILD-TYPE	78	117	27	43	12

'FZD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.11

Table S2390. Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FZD3 MUTATED	0	6	1	1
FZD3 WILD-TYPE	71	70	33	62

Figure S1160. Get High-res Image Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FZD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.2

Table S2391. Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FZD3 MUTATED	6	1	2
FZD3 WILD-TYPE	72	85	83

'FZD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.27

Table S2392. Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FZD3 MUTATED	2	1	4	2
FZD3 WILD-TYPE	31	77	47	85

'FZD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.59

Table S2393. Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FZD3 MUTATED	3	1	0	2	1
FZD3 WILD-TYPE	62	58	42	32	56

'FZD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 0.056

Table S2394. Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FZD3 MUTATED	3	0	0	0	2	0	2
FZD3 WILD-TYPE	33	21	48	56	37	37	18

Figure S1161. Get High-res Image Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FZD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.055

Table S2395. Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FZD3 MUTATED	9	1	0
FZD3 WILD-TYPE	117	95	67

Figure S1162. Get High-res Image Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FZD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.058

Table S2396. Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FZD3 MUTATED	5	5	0	0
FZD3 WILD-TYPE	51	100	60	68

Figure S1163. Get High-res Image Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FZD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.64

Table S2397. Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FZD3 MUTATED	2	1	3	2	0	0
FZD3 WILD-TYPE	32	17	56	36	19	43

'FZD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S2398. Gene #240: 'FZD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FZD3 MUTATED	5	0	3
FZD3 WILD-TYPE	117	51	35

'CETN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.37

Table S2399. Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CETN3 MUTATED	0	6	0	1	0
CETN3 WILD-TYPE	79	120	27	42	12

'CETN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S2400. Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CETN3 MUTATED	0	4	0	1
CETN3 WILD-TYPE	71	72	34	62

'CETN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.85

Table S2401. Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CETN3 MUTATED	3	2	2
CETN3 WILD-TYPE	75	84	83

'CETN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.29

Table S2402. Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CETN3 MUTATED	0	1	4	2
CETN3 WILD-TYPE	33	77	47	85

'CETN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.78

Table S2403. Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CETN3 MUTATED	2	1	1	1	0
CETN3 WILD-TYPE	63	58	41	33	57

'CETN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.47

Table S2404. Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CETN3 MUTATED	2	0	0	1	2	0	0
CETN3 WILD-TYPE	34	21	48	55	37	37	20

'CETN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.18

Table S2405. Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CETN3 MUTATED	6	1	0
CETN3 WILD-TYPE	120	95	67

'CETN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0823 (Fisher's exact test), Q value = 0.18

Table S2406. Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CETN3 MUTATED	4	2	1	0
CETN3 WILD-TYPE	52	103	59	68

'CETN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.29

Table S2407. Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CETN3 MUTATED	3	0	2	0	0	0
CETN3 WILD-TYPE	31	18	57	38	19	43

'CETN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.49

Table S2408. Gene #241: 'CETN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CETN3 MUTATED	2	1	2
CETN3 WILD-TYPE	120	50	36

'PSME4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0039

Table S2409. Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PSME4 MUTATED	1	26	1	4	2
PSME4 WILD-TYPE	78	100	26	39	10

Figure S1164. Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PSME4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S2410. Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PSME4 MUTATED	1	20	3	1
PSME4 WILD-TYPE	70	56	31	62

Figure S1165. Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PSME4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.009 (Fisher's exact test), Q value = 0.049

Table S2411. Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PSME4 MUTATED	16	5	7
PSME4 WILD-TYPE	62	81	78

Figure S1166. Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PSME4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00164 (Fisher's exact test), Q value = 0.018

Table S2412. Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PSME4 MUTATED	5	6	13	4
PSME4 WILD-TYPE	28	72	38	83

Figure S1167. Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PSME4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0041

Table S2413. Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PSME4 MUTATED	19	4	1	4	3
PSME4 WILD-TYPE	46	55	41	30	54

Figure S1168. Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PSME4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S2414. Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PSME4 MUTATED	9	0	0	7	6	0	9
PSME4 WILD-TYPE	27	21	48	49	33	37	11

Figure S1169. Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PSME4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0031

Table S2415. Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PSME4 MUTATED	27	3	5
PSME4 WILD-TYPE	99	93	62

Figure S1170. Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PSME4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S2416. Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PSME4 MUTATED	22	8	3	2
PSME4 WILD-TYPE	34	97	57	66

Figure S1171. Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PSME4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.28

Table S2417. Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PSME4 MUTATED	5	2	5	7	1	1
PSME4 WILD-TYPE	29	16	54	31	18	42

'PSME4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00303 (Fisher's exact test), Q value = 0.026

Table S2418. Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PSME4 MUTATED	8	3	10
PSME4 WILD-TYPE	114	48	28

Figure S1172. Get High-res Image Gene #242: 'PSME4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GNPNAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S2419. Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GNPNAT1 MUTATED	0	3	0	1	0
GNPNAT1 WILD-TYPE	79	123	27	42	12

'GNPNAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.7

Table S2420. Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GNPNAT1 MUTATED	0	2	0	1
GNPNAT1 WILD-TYPE	71	74	34	62

'GNPNAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2421. Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GNPNAT1 MUTATED	1	2	1
GNPNAT1 WILD-TYPE	77	84	84

'GNPNAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2422. Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GNPNAT1 MUTATED	0	1	1	2
GNPNAT1 WILD-TYPE	33	77	50	85

'GNPNAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.37

Table S2423. Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GNPNAT1 MUTATED	2	0	0	1	0
GNPNAT1 WILD-TYPE	63	59	42	33	57

'GNPNAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.13

Table S2424. Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GNPNAT1 MUTATED	2	0	0	0	0	0	1
GNPNAT1 WILD-TYPE	34	21	48	56	39	37	19

Figure S1173. Get High-res Image Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.65

Table S2425. Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GNPNAT1 MUTATED	3	1	0
GNPNAT1 WILD-TYPE	123	95	67

'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.57

Table S2426. Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GNPNAT1 MUTATED	0	3	1	0
GNPNAT1 WILD-TYPE	56	102	59	68

'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.84

Table S2427. Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GNPNAT1 MUTATED	0	0	2	1	0	0
GNPNAT1 WILD-TYPE	34	18	57	37	19	43

'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2428. Gene #243: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GNPNAT1 MUTATED	2	1	0
GNPNAT1 WILD-TYPE	120	50	38

'ZDHHC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.29

Table S2429. Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZDHHC7 MUTATED	0	6	0	0	0
ZDHHC7 WILD-TYPE	79	120	27	43	12

'ZDHHC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.06

Table S2430. Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZDHHC7 MUTATED	0	5	0	0
ZDHHC7 WILD-TYPE	71	71	34	63

Figure S1174. Get High-res Image Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.17

Table S2431. Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZDHHC7 MUTATED	3	0	1
ZDHHC7 WILD-TYPE	75	86	84

'ZDHHC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.7

Table S2432. Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZDHHC7 MUTATED	0	1	2	1
ZDHHC7 WILD-TYPE	33	77	49	86

'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.082

Table S2433. Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZDHHC7 MUTATED	5	0	1	0	0
ZDHHC7 WILD-TYPE	60	59	41	34	57

Figure S1175. Get High-res Image Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0801 (Fisher's exact test), Q value = 0.18

Table S2434. Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZDHHC7 MUTATED	0	0	0	3	1	0	2
ZDHHC7 WILD-TYPE	36	21	48	53	38	37	18

'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.29

Table S2435. Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZDHHC7 MUTATED	5	1	0
ZDHHC7 WILD-TYPE	121	95	67

'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.22

Table S2436. Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZDHHC7 MUTATED	3	3	0	0
ZDHHC7 WILD-TYPE	53	102	60	68

'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.26

Table S2437. Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZDHHC7 MUTATED	0	1	1	3	0	0
ZDHHC7 WILD-TYPE	34	17	58	35	19	43

'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.42

Table S2438. Gene #244: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZDHHC7 MUTATED	3	0	2
ZDHHC7 WILD-TYPE	119	51	36

'PANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.22

Table S2439. Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PANK1 MUTATED	0	7	1	0	0
PANK1 WILD-TYPE	79	119	26	43	12

'PANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.27

Table S2440. Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PANK1 MUTATED	0	3	2	1
PANK1 WILD-TYPE	71	73	32	62

'PANK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.27

Table S2441. Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PANK1 MUTATED	5	1	2
PANK1 WILD-TYPE	73	85	83

'PANK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.63

Table S2442. Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PANK1 MUTATED	1	1	3	3
PANK1 WILD-TYPE	32	77	48	84

'PANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.36

Table S2443. Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PANK1 MUTATED	4	1	1	2	0
PANK1 WILD-TYPE	61	58	41	32	57

'PANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.25

Table S2444. Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PANK1 MUTATED	2	1	0	1	2	0	2
PANK1 WILD-TYPE	34	20	48	55	37	37	18

'PANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.29

Table S2445. Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PANK1 MUTATED	6	2	0
PANK1 WILD-TYPE	120	94	67

'PANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 0.83

Table S2446. Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PANK1 MUTATED	2	4	1	1
PANK1 WILD-TYPE	54	101	59	67

'PANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.51

Table S2447. Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PANK1 MUTATED	0	2	2	1	0	1
PANK1 WILD-TYPE	34	16	57	37	19	42

'PANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2448. Gene #245: 'PANK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PANK1 MUTATED	4	1	1
PANK1 WILD-TYPE	118	50	37

'FAM116A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S2449. Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM116A MUTATED	0	5	0	0	1
FAM116A WILD-TYPE	79	121	27	43	11

'FAM116A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.49

Table S2450. Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM116A MUTATED	1	3	0	0
FAM116A WILD-TYPE	70	73	34	63

'FAM116A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.29

Table S2451. Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FAM116A MUTATED	3	0	3
FAM116A WILD-TYPE	75	86	82

'FAM116A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.085

Table S2452. Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FAM116A MUTATED	0	2	4	0
FAM116A WILD-TYPE	33	76	47	87

Figure S1176. Get High-res Image Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM116A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.66

Table S2453. Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FAM116A MUTATED	3	1	1	1	0
FAM116A WILD-TYPE	62	58	41	33	57

'FAM116A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.59

Table S2454. Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FAM116A MUTATED	1	0	0	2	2	0	1
FAM116A WILD-TYPE	35	21	48	54	37	37	19

'FAM116A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.29

Table S2455. Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FAM116A MUTATED	5	1	0
FAM116A WILD-TYPE	121	95	67

'FAM116A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 0.1

Table S2456. Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FAM116A MUTATED	4	1	1	0
FAM116A WILD-TYPE	52	104	59	68

Figure S1177. Get High-res Image Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM116A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.27

Table S2457. Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FAM116A MUTATED	2	1	0	0	0	1
FAM116A WILD-TYPE	32	17	59	38	19	42

'FAM116A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.24

Table S2458. Gene #246: 'FAM116A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FAM116A MUTATED	1	1	2
FAM116A WILD-TYPE	121	50	36

'C11ORF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.31

Table S2459. Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C11ORF9 MUTATED	0	7	0	1	0
C11ORF9 WILD-TYPE	79	119	27	42	12

'C11ORF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.3

Table S2460. Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C11ORF9 MUTATED	0	4	1	1
C11ORF9 WILD-TYPE	71	72	33	62

'C11ORF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.061

Table S2461. Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C11ORF9 MUTATED	6	2	0
C11ORF9 WILD-TYPE	72	84	85

Figure S1178. Get High-res Image Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C11ORF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.45

Table S2462. Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C11ORF9 MUTATED	0	1	3	4
C11ORF9 WILD-TYPE	33	77	48	83

'C11ORF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.53

Table S2463. Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C11ORF9 MUTATED	3	2	1	2	0
C11ORF9 WILD-TYPE	62	57	41	32	57

'C11ORF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.44

Table S2464. Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C11ORF9 MUTATED	2	0	1	1	2	0	2
C11ORF9 WILD-TYPE	34	21	47	55	37	37	18

'C11ORF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.29

Table S2465. Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C11ORF9 MUTATED	6	2	0
C11ORF9 WILD-TYPE	120	94	67

'C11ORF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.33

Table S2466. Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C11ORF9 MUTATED	3	4	1	0
C11ORF9 WILD-TYPE	53	101	59	68

'C11ORF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.951 (Fisher's exact test), Q value = 0.98

Table S2467. Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C11ORF9 MUTATED	1	0	2	2	0	1
C11ORF9 WILD-TYPE	33	18	57	36	19	42

'C11ORF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2468. Gene #247: 'C11ORF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C11ORF9 MUTATED	4	1	1
C11ORF9 WILD-TYPE	118	50	37

'KIAA0195 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.07

Table S2469. Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA0195 MUTATED	0	12	2	1	0
KIAA0195 WILD-TYPE	79	114	25	42	12

Figure S1179. Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0195 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.0069

Table S2470. Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA0195 MUTATED	0	11	2	1
KIAA0195 WILD-TYPE	71	65	32	62

Figure S1180. Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0195 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.0068

Table S2471. Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA0195 MUTATED	10	0	3
KIAA0195 WILD-TYPE	68	86	82

Figure S1181. Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA0195 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S2472. Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA0195 MUTATED	1	2	10	0
KIAA0195 WILD-TYPE	32	76	41	87

Figure S1182. Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00984 (Fisher's exact test), Q value = 0.051

Table S2473. Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA0195 MUTATED	8	1	0	3	1
KIAA0195 WILD-TYPE	57	58	42	31	56

Figure S1183. Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0037

Table S2474. Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA0195 MUTATED	1	0	0	1	7	0	4
KIAA0195 WILD-TYPE	35	21	48	55	32	37	16

Figure S1184. Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00142 (Fisher's exact test), Q value = 0.016

Table S2475. Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA0195 MUTATED	14	1	1
KIAA0195 WILD-TYPE	112	95	66

Figure S1185. Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0045

Table S2476. Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA0195 MUTATED	10	5	1	0
KIAA0195 WILD-TYPE	46	100	59	68

Figure S1186. Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.16

Table S2477. Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA0195 MUTATED	4	1	1	5	0	1
KIAA0195 WILD-TYPE	30	17	58	33	19	42

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S2478. Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA0195 MUTATED	2	1	9
KIAA0195 WILD-TYPE	120	50	29

Figure S1187. Get High-res Image Gene #248: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRIP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.31

Table S2479. Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRIP10 MUTATED	0	4	1	1	1
TRIP10 WILD-TYPE	79	122	26	42	11

'TRIP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.098

Table S2480. Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRIP10 MUTATED	0	6	0	2
TRIP10 WILD-TYPE	71	70	34	61

Figure S1188. Get High-res Image Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRIP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S2481. Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TRIP10 MUTATED	4	1	2
TRIP10 WILD-TYPE	74	85	83

'TRIP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.054 (Fisher's exact test), Q value = 0.14

Table S2482. Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TRIP10 MUTATED	2	2	3	0
TRIP10 WILD-TYPE	31	76	48	87

'TRIP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S2483. Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TRIP10 MUTATED	5	0	1	1	1
TRIP10 WILD-TYPE	60	59	41	33	56

'TRIP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.36

Table S2484. Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TRIP10 MUTATED	2	0	0	2	3	0	1
TRIP10 WILD-TYPE	34	21	48	54	36	37	19

'TRIP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.092

Table S2485. Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TRIP10 MUTATED	7	0	1
TRIP10 WILD-TYPE	119	96	66

Figure S1189. Get High-res Image Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TRIP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.053

Table S2486. Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TRIP10 MUTATED	5	3	0	0
TRIP10 WILD-TYPE	51	102	60	68

Figure S1190. Get High-res Image Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TRIP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.33

Table S2487. Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TRIP10 MUTATED	2	0	4	0	0	0
TRIP10 WILD-TYPE	32	18	55	38	19	43

'TRIP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S2488. Gene #249: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TRIP10 MUTATED	4	0	2
TRIP10 WILD-TYPE	118	51	36

'PRKAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 0.87

Table S2489. Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRKAB1 MUTATED	2	2	1	1	0
PRKAB1 WILD-TYPE	77	124	26	42	12

'PRKAB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.67

Table S2490. Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRKAB1 MUTATED	2	1	1	0
PRKAB1 WILD-TYPE	69	75	33	63

'PRKAB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.56

Table S2491. Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PRKAB1 MUTATED	3	1	2
PRKAB1 WILD-TYPE	75	85	83

'PRKAB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.72

Table S2492. Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PRKAB1 MUTATED	0	1	2	3
PRKAB1 WILD-TYPE	33	77	49	84

'PRKAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 0.94

Table S2493. Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PRKAB1 MUTATED	1	1	1	0	2
PRKAB1 WILD-TYPE	64	58	41	34	55

'PRKAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.47

Table S2494. Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PRKAB1 MUTATED	2	0	0	1	0	1	1
PRKAB1 WILD-TYPE	34	21	48	55	39	36	19

'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 0.83

Table S2495. Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PRKAB1 MUTATED	2	3	1
PRKAB1 WILD-TYPE	124	93	66

'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 0.98

Table S2496. Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PRKAB1 MUTATED	1	2	1	2
PRKAB1 WILD-TYPE	55	103	59	66

'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.59

Table S2497. Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PRKAB1 MUTATED	1	0	0	1	0	2
PRKAB1 WILD-TYPE	33	18	59	37	19	41

'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2498. Gene #250: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PRKAB1 MUTATED	3	1	0
PRKAB1 WILD-TYPE	119	50	38

'FAM193A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0396 (Fisher's exact test), Q value = 0.12

Table S2499. Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM193A MUTATED	2	12	0	0	1
FAM193A WILD-TYPE	77	114	27	43	11

Figure S1191. Get High-res Image Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM193A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S2500. Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM193A MUTATED	2	6	0	1
FAM193A WILD-TYPE	69	70	34	62

'FAM193A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.29

Table S2501. Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FAM193A MUTATED	7	2	4
FAM193A WILD-TYPE	71	84	81

'FAM193A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 0.53

Table S2502. Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FAM193A MUTATED	1	4	5	3
FAM193A WILD-TYPE	32	74	46	84

'FAM193A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 0.13

Table S2503. Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FAM193A MUTATED	4	1	4	5	1
FAM193A WILD-TYPE	61	58	38	29	56

Figure S1192. Get High-res Image Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM193A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S2504. Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FAM193A MUTATED	2	0	0	5	3	1	4
FAM193A WILD-TYPE	34	21	48	51	36	36	16

Figure S1193. Get High-res Image Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.061

Table S2505. Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FAM193A MUTATED	12	2	1
FAM193A WILD-TYPE	114	94	66

Figure S1194. Get High-res Image Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00366 (Fisher's exact test), Q value = 0.029

Table S2506. Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FAM193A MUTATED	8	3	0	4
FAM193A WILD-TYPE	48	102	60	64

Figure S1195. Get High-res Image Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM193A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.48

Table S2507. Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FAM193A MUTATED	2	1	1	2	1	0
FAM193A WILD-TYPE	32	17	58	36	18	43

'FAM193A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.39

Table S2508. Gene #251: 'FAM193A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FAM193A MUTATED	5	0	2
FAM193A WILD-TYPE	117	51	36

'AXIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S2509. Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AXIN2 MUTATED	1	11	1	1	1
AXIN2 WILD-TYPE	78	115	26	42	11

'AXIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00518 (Fisher's exact test), Q value = 0.035

Table S2510. Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AXIN2 MUTATED	0	9	1	2
AXIN2 WILD-TYPE	71	67	33	61

Figure S1196. Get High-res Image Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AXIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.29

Table S2511. Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
AXIN2 MUTATED	7	2	4
AXIN2 WILD-TYPE	71	84	81

'AXIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.31

Table S2512. Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
AXIN2 MUTATED	1	3	6	3
AXIN2 WILD-TYPE	32	75	45	84

'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00446 (Fisher's exact test), Q value = 0.032

Table S2513. Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
AXIN2 MUTATED	8	2	0	3	0
AXIN2 WILD-TYPE	57	57	42	31	57

Figure S1197. Get High-res Image Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0678 (Fisher's exact test), Q value = 0.16

Table S2514. Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
AXIN2 MUTATED	1	0	2	3	3	0	4
AXIN2 WILD-TYPE	35	21	46	53	36	37	16

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.06

Table S2515. Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
AXIN2 MUTATED	12	2	1
AXIN2 WILD-TYPE	114	94	66

Figure S1198. Get High-res Image Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00884 (Fisher's exact test), Q value = 0.048

Table S2516. Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
AXIN2 MUTATED	8	5	1	1
AXIN2 WILD-TYPE	48	100	59	67

Figure S1199. Get High-res Image Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.34

Table S2517. Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
AXIN2 MUTATED	1	2	2	5	1	1
AXIN2 WILD-TYPE	33	16	57	33	18	42

'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.091 (Fisher's exact test), Q value = 0.19

Table S2518. Gene #252: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
AXIN2 MUTATED	6	1	5
AXIN2 WILD-TYPE	116	50	33

'CYP27B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.61

Table S2519. Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CYP27B1 MUTATED	0	4	0	1	0
CYP27B1 WILD-TYPE	79	122	27	42	12

'CYP27B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.73

Table S2520. Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CYP27B1 MUTATED	1	3	0	1
CYP27B1 WILD-TYPE	70	73	34	62

'CYP27B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.4

Table S2521. Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CYP27B1 MUTATED	2	3	0
CYP27B1 WILD-TYPE	76	83	85

'CYP27B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.43

Table S2522. Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CYP27B1 MUTATED	1	0	2	2
CYP27B1 WILD-TYPE	32	78	49	85

'CYP27B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 0.8

Table S2523. Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CYP27B1 MUTATED	2	1	1	0	0
CYP27B1 WILD-TYPE	63	58	41	34	57

'CYP27B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S2524. Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CYP27B1 MUTATED	1	0	0	2	1	0	0
CYP27B1 WILD-TYPE	35	21	48	54	38	37	20

'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.7

Table S2525. Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CYP27B1 MUTATED	3	2	0
CYP27B1 WILD-TYPE	123	94	67

'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.73

Table S2526. Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CYP27B1 MUTATED	2	1	1	1
CYP27B1 WILD-TYPE	54	104	59	67

'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 0.18

Table S2527. Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CYP27B1 MUTATED	1	2	1	0	1	0
CYP27B1 WILD-TYPE	33	16	58	38	18	43

'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.49

Table S2528. Gene #253: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CYP27B1 MUTATED	2	1	2
CYP27B1 WILD-TYPE	120	50	36

'C12ORF51 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0054

Table S2529. Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C12ORF51 MUTATED	1	21	4	1	3
C12ORF51 WILD-TYPE	78	105	23	42	9

Figure S1200. Get High-res Image Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C12ORF51 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0027

Table S2530. Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C12ORF51 MUTATED	2	17	3	1
C12ORF51 WILD-TYPE	69	59	31	62

Figure S1201. Get High-res Image Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C12ORF51 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.13

Table S2531. Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C12ORF51 MUTATED	14	6	6
C12ORF51 WILD-TYPE	64	80	79

Figure S1202. Get High-res Image Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C12ORF51 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00104 (Fisher's exact test), Q value = 0.013

Table S2532. Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C12ORF51 MUTATED	5	2	12	7
C12ORF51 WILD-TYPE	28	76	39	80

Figure S1203. Get High-res Image Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C12ORF51 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.099

Table S2533. Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C12ORF51 MUTATED	12	6	4	2	1
C12ORF51 WILD-TYPE	53	53	38	32	56

Figure S1204. Get High-res Image Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C12ORF51 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00461 (Fisher's exact test), Q value = 0.032

Table S2534. Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C12ORF51 MUTATED	6	0	2	8	2	1	6
C12ORF51 WILD-TYPE	30	21	46	48	37	36	14

Figure S1205. Get High-res Image Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.11

Table S2535. Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C12ORF51 MUTATED	20	6	4
C12ORF51 WILD-TYPE	106	90	63

Figure S1206. Get High-res Image Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0548 (Fisher's exact test), Q value = 0.14

Table S2536. Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C12ORF51 MUTATED	11	11	5	3
C12ORF51 WILD-TYPE	45	94	55	65

'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.45

Table S2537. Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C12ORF51 MUTATED	2	3	9	4	0	3
C12ORF51 WILD-TYPE	32	15	50	34	19	40

'C12ORF51 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 0.77

Table S2538. Gene #254: 'C12ORF51 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C12ORF51 MUTATED	12	4	5
C12ORF51 WILD-TYPE	110	47	33

'UBQLN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.26

Table S2539. Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
UBQLN2 MUTATED	0	4	0	0	1
UBQLN2 WILD-TYPE	79	122	27	43	11

'UBQLN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.59

Table S2540. Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
UBQLN2 MUTATED	0	2	0	2
UBQLN2 WILD-TYPE	71	74	34	61

'UBQLN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 0.18

Table S2541. Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
UBQLN2 MUTATED	3	0	1
UBQLN2 WILD-TYPE	75	86	84

'UBQLN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.061

Table S2542. Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
UBQLN2 MUTATED	2	0	2	0
UBQLN2 WILD-TYPE	31	78	49	87

Figure S1207. Get High-res Image Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.32

Table S2543. Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
UBQLN2 MUTATED	3	0	1	1	0
UBQLN2 WILD-TYPE	62	59	41	33	57

'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.37

Table S2544. Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
UBQLN2 MUTATED	1	0	0	3	0	0	1
UBQLN2 WILD-TYPE	35	21	48	53	39	37	19

'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.15

Table S2545. Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
UBQLN2 MUTATED	5	0	0
UBQLN2 WILD-TYPE	121	96	67

'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.4

Table S2546. Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
UBQLN2 MUTATED	2	3	0	0
UBQLN2 WILD-TYPE	54	102	60	68

'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.84

Table S2547. Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
UBQLN2 MUTATED	0	0	2	1	0	0
UBQLN2 WILD-TYPE	34	18	57	37	19	43

'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.66

Table S2548. Gene #255: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
UBQLN2 MUTATED	2	0	1
UBQLN2 WILD-TYPE	120	51	37

'PHACTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.66

Table S2549. Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PHACTR2 MUTATED	2	8	2	1	0
PHACTR2 WILD-TYPE	77	118	25	42	12

'PHACTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00218 (Fisher's exact test), Q value = 0.021

Table S2550. Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PHACTR2 MUTATED	1	9	1	0
PHACTR2 WILD-TYPE	70	67	33	63

Figure S1208. Get High-res Image Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHACTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.51

Table S2551. Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PHACTR2 MUTATED	5	2	2
PHACTR2 WILD-TYPE	73	84	83

'PHACTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.45

Table S2552. Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PHACTR2 MUTATED	0	2	4	3
PHACTR2 WILD-TYPE	33	76	47	84

'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.32

Table S2553. Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PHACTR2 MUTATED	7	2	1	1	1
PHACTR2 WILD-TYPE	58	57	41	33	56

'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S2554. Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PHACTR2 MUTATED	1	0	1	3	2	1	4
PHACTR2 WILD-TYPE	35	21	47	53	37	36	16

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.78

Table S2555. Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PHACTR2 MUTATED	7	3	3
PHACTR2 WILD-TYPE	119	93	64

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0244 (Fisher's exact test), Q value = 0.088

Table S2556. Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PHACTR2 MUTATED	7	2	2	2
PHACTR2 WILD-TYPE	49	103	58	66

Figure S1209. Get High-res Image Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.24

Table S2557. Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PHACTR2 MUTATED	1	1	0	4	1	2
PHACTR2 WILD-TYPE	33	17	59	34	18	41

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.6

Table S2558. Gene #256: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PHACTR2 MUTATED	4	2	3
PHACTR2 WILD-TYPE	118	49	35

'ADNP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.052

Table S2559. Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ADNP2 MUTATED	1	14	2	0	1
ADNP2 WILD-TYPE	78	112	25	43	11

Figure S1210. Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADNP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.0066

Table S2560. Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ADNP2 MUTATED	1	9	5	0
ADNP2 WILD-TYPE	70	67	29	63

Figure S1211. Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADNP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.067

Table S2561. Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ADNP2 MUTATED	9	1	5
ADNP2 WILD-TYPE	69	85	80

Figure S1212. Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ADNP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S2562. Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ADNP2 MUTATED	4	2	9	0
ADNP2 WILD-TYPE	29	76	42	87

Figure S1213. Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0048

Table S2563. Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ADNP2 MUTATED	10	0	2	4	0
ADNP2 WILD-TYPE	55	59	40	30	57

Figure S1214. Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00239 (Fisher's exact test), Q value = 0.022

Table S2564. Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ADNP2 MUTATED	1	2	0	5	3	0	5
ADNP2 WILD-TYPE	35	19	48	51	36	37	15

Figure S1215. Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S2565. Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ADNP2 MUTATED	17	0	1
ADNP2 WILD-TYPE	109	96	66

Figure S1216. Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S2566. Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ADNP2 MUTATED	10	8	0	0
ADNP2 WILD-TYPE	46	97	60	68

Figure S1217. Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.11

Table S2567. Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ADNP2 MUTATED	1	3	7	3	0	0
ADNP2 WILD-TYPE	33	15	52	35	19	43

Figure S1218. Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00979 (Fisher's exact test), Q value = 0.051

Table S2568. Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ADNP2 MUTATED	8	0	6
ADNP2 WILD-TYPE	114	51	32

Figure S1219. Get High-res Image Gene #257: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VPRBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00593 (Fisher's exact test), Q value = 0.038

Table S2569. Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
VPRBP MUTATED	0	11	0	0	1
VPRBP WILD-TYPE	79	115	27	43	11

Figure S1220. Get High-res Image Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VPRBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.37

Table S2570. Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
VPRBP MUTATED	0	4	1	2
VPRBP WILD-TYPE	71	72	33	61

'VPRBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.15

Table S2571. Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
VPRBP MUTATED	7	1	4
VPRBP WILD-TYPE	71	85	81

'VPRBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.21

Table S2572. Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
VPRBP MUTATED	1	3	6	2
VPRBP WILD-TYPE	32	75	45	85

'VPRBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00333 (Fisher's exact test), Q value = 0.027

Table S2573. Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
VPRBP MUTATED	8	1	1	0	0
VPRBP WILD-TYPE	57	58	41	34	57

Figure S1221. Get High-res Image Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'VPRBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.28

Table S2574. Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
VPRBP MUTATED	2	0	1	3	1	0	3
VPRBP WILD-TYPE	34	21	47	53	38	37	17

'VPRBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.07

Table S2575. Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
VPRBP MUTATED	10	2	0
VPRBP WILD-TYPE	116	94	67

Figure S1222. Get High-res Image Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'VPRBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00172 (Fisher's exact test), Q value = 0.018

Table S2576. Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
VPRBP MUTATED	8	2	1	1
VPRBP WILD-TYPE	48	103	59	67

Figure S1223. Get High-res Image Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'VPRBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 0.92

Table S2577. Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
VPRBP MUTATED	2	0	2	2	0	1
VPRBP WILD-TYPE	32	18	57	36	19	42

'VPRBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 0.81

Table S2578. Gene #258: 'VPRBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
VPRBP MUTATED	4	1	2
VPRBP WILD-TYPE	118	50	36

'PCGF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.34

Table S2579. Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PCGF3 MUTATED	0	5	1	0	0
PCGF3 WILD-TYPE	79	121	26	43	12

'PCGF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.079

Table S2580. Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PCGF3 MUTATED	0	5	1	0
PCGF3 WILD-TYPE	71	71	33	63

Figure S1224. Get High-res Image Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCGF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.29

Table S2581. Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PCGF3 MUTATED	3	0	2
PCGF3 WILD-TYPE	75	86	83

'PCGF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00343 (Fisher's exact test), Q value = 0.027

Table S2582. Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PCGF3 MUTATED	1	0	4	0
PCGF3 WILD-TYPE	32	78	47	87

Figure S1225. Get High-res Image Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PCGF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 0.14

Table S2583. Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PCGF3 MUTATED	3	0	0	2	0
PCGF3 WILD-TYPE	62	59	42	32	57

'PCGF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0707 (Fisher's exact test), Q value = 0.17

Table S2584. Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PCGF3 MUTATED	0	0	0	1	2	0	2
PCGF3 WILD-TYPE	36	21	48	55	37	37	18

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.078

Table S2585. Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PCGF3 MUTATED	6	0	0
PCGF3 WILD-TYPE	120	96	67

Figure S1226. Get High-res Image Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0281 (Fisher's exact test), Q value = 0.094

Table S2586. Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PCGF3 MUTATED	4	2	0	0
PCGF3 WILD-TYPE	52	103	60	68

Figure S1227. Get High-res Image Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.11

Table S2587. Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PCGF3 MUTATED	1	3	1	1	0	0
PCGF3 WILD-TYPE	33	15	58	37	19	43

Figure S1228. Get High-res Image Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0912 (Fisher's exact test), Q value = 0.19

Table S2588. Gene #259: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PCGF3 MUTATED	3	0	3
PCGF3 WILD-TYPE	119	51	35

'C20ORF160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.31

Table S2589. Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C20ORF160 MUTATED	0	7	0	1	0
C20ORF160 WILD-TYPE	79	119	27	42	12

'C20ORF160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.49

Table S2590. Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C20ORF160 MUTATED	1	4	2	1
C20ORF160 WILD-TYPE	70	72	32	62

'C20ORF160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.065

Table S2591. Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C20ORF160 MUTATED	5	1	0
C20ORF160 WILD-TYPE	73	85	85

Figure S1229. Get High-res Image Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C20ORF160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S2592. Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C20ORF160 MUTATED	2	1	2	1
C20ORF160 WILD-TYPE	31	77	49	86

'C20ORF160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.11

Table S2593. Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C20ORF160 MUTATED	5	0	0	0	1
C20ORF160 WILD-TYPE	60	59	42	34	56

Figure S1230. Get High-res Image Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C20ORF160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.069

Table S2594. Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C20ORF160 MUTATED	0	0	0	2	0	1	3
C20ORF160 WILD-TYPE	36	21	48	54	39	36	17

Figure S1231. Get High-res Image Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.094

Table S2595. Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C20ORF160 MUTATED	7	0	1
C20ORF160 WILD-TYPE	119	96	66

Figure S1232. Get High-res Image Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S2596. Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C20ORF160 MUTATED	4	3	0	1
C20ORF160 WILD-TYPE	52	102	60	67

'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.47

Table S2597. Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C20ORF160 MUTATED	0	1	3	2	1	0
C20ORF160 WILD-TYPE	34	17	56	36	18	43

'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.39

Table S2598. Gene #260: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C20ORF160 MUTATED	5	0	2
C20ORF160 WILD-TYPE	117	51	36

'EFHA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.25

Table S2599. Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EFHA1 MUTATED	0	6	1	1	1
EFHA1 WILD-TYPE	79	120	26	42	11

'EFHA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.16

Table S2600. Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EFHA1 MUTATED	0	5	2	1
EFHA1 WILD-TYPE	71	71	32	62

'EFHA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2601. Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EFHA1 MUTATED	2	2	2
EFHA1 WILD-TYPE	76	84	83

'EFHA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.21

Table S2602. Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EFHA1 MUTATED	2	2	2	0
EFHA1 WILD-TYPE	31	76	49	87

'EFHA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00413 (Fisher's exact test), Q value = 0.03

Table S2603. Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EFHA1 MUTATED	6	0	0	1	0
EFHA1 WILD-TYPE	59	59	42	33	57

Figure S1233. Get High-res Image Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EFHA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0455 (Fisher's exact test), Q value = 0.13

Table S2604. Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EFHA1 MUTATED	1	0	0	2	1	0	3
EFHA1 WILD-TYPE	35	21	48	54	38	37	17

Figure S1234. Get High-res Image Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EFHA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.091

Table S2605. Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EFHA1 MUTATED	8	1	0
EFHA1 WILD-TYPE	118	95	67

Figure S1235. Get High-res Image Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EFHA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0402 (Fisher's exact test), Q value = 0.12

Table S2606. Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EFHA1 MUTATED	5	3	1	0
EFHA1 WILD-TYPE	51	102	59	68

Figure S1236. Get High-res Image Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EFHA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S2607. Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EFHA1 MUTATED	0	2	3	2	0	1
EFHA1 WILD-TYPE	34	16	56	36	19	42

'EFHA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0706 (Fisher's exact test), Q value = 0.17

Table S2608. Gene #261: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EFHA1 MUTATED	3	1	4
EFHA1 WILD-TYPE	119	50	34

'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0063

Table S2609. Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ALPK2 MUTATED	0	17	1	0	1
ALPK2 WILD-TYPE	79	109	26	43	11

Figure S1237. Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.13

Table S2610. Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ALPK2 MUTATED	1	9	1	3
ALPK2 WILD-TYPE	70	67	33	60

Figure S1238. Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ALPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00946 (Fisher's exact test), Q value = 0.05

Table S2611. Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ALPK2 MUTATED	10	2	2
ALPK2 WILD-TYPE	68	84	83

Figure S1239. Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ALPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 0.12

Table S2612. Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ALPK2 MUTATED	2	3	7	2
ALPK2 WILD-TYPE	31	75	44	85

Figure S1240. Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.094

Table S2613. Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ALPK2 MUTATED	9	3	3	2	0
ALPK2 WILD-TYPE	56	56	39	32	57

Figure S1241. Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.058

Table S2614. Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ALPK2 MUTATED	3	0	1	5	3	0	5
ALPK2 WILD-TYPE	33	21	47	51	36	37	15

Figure S1242. Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00579 (Fisher's exact test), Q value = 0.037

Table S2615. Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ALPK2 MUTATED	15	3	1
ALPK2 WILD-TYPE	111	93	66

Figure S1243. Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0038

Table S2616. Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ALPK2 MUTATED	11	6	2	0
ALPK2 WILD-TYPE	45	99	58	68

Figure S1244. Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.11

Table S2617. Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ALPK2 MUTATED	0	3	3	5	0	1
ALPK2 WILD-TYPE	34	15	56	33	19	42

Figure S1245. Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.068

Table S2618. Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ALPK2 MUTATED	5	1	6
ALPK2 WILD-TYPE	117	50	32

Figure S1246. Get High-res Image Gene #262: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C16ORF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.43

Table S2619. Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C16ORF7 MUTATED	1	9	2	2	0
C16ORF7 WILD-TYPE	78	117	25	41	12

'C16ORF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.27

Table S2620. Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C16ORF7 MUTATED	1	6	2	1
C16ORF7 WILD-TYPE	70	70	32	62

'C16ORF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.4

Table S2621. Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C16ORF7 MUTATED	6	2	4
C16ORF7 WILD-TYPE	72	84	81

'C16ORF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 0.18

Table S2622. Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C16ORF7 MUTATED	0	3	6	3
C16ORF7 WILD-TYPE	33	75	45	84

'C16ORF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 0.97

Table S2623. Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C16ORF7 MUTATED	4	2	2	2	2
C16ORF7 WILD-TYPE	61	57	40	32	55

'C16ORF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.34

Table S2624. Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C16ORF7 MUTATED	3	0	0	3	4	1	1
C16ORF7 WILD-TYPE	33	21	48	53	35	36	19

'C16ORF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.093

Table S2625. Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C16ORF7 MUTATED	11	2	1
C16ORF7 WILD-TYPE	115	94	66

Figure S1247. Get High-res Image Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C16ORF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.58

Table S2626. Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C16ORF7 MUTATED	5	5	2	2
C16ORF7 WILD-TYPE	51	100	58	66

'C16ORF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 0.92

Table S2627. Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C16ORF7 MUTATED	2	1	3	1	0	1
C16ORF7 WILD-TYPE	32	17	56	37	19	42

'C16ORF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.48

Table S2628. Gene #263: 'C16ORF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C16ORF7 MUTATED	4	1	3
C16ORF7 WILD-TYPE	118	50	35

'HIVEP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.1

Table S2629. Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HIVEP1 MUTATED	2	16	3	1	0
HIVEP1 WILD-TYPE	77	110	24	42	12

Figure S1248. Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HIVEP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00305 (Fisher's exact test), Q value = 0.026

Table S2630. Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HIVEP1 MUTATED	1	13	3	3
HIVEP1 WILD-TYPE	70	63	31	60

Figure S1249. Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIVEP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 0.14

Table S2631. Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HIVEP1 MUTATED	11	4	4
HIVEP1 WILD-TYPE	67	82	81

'HIVEP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 0.098

Table S2632. Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HIVEP1 MUTATED	6	3	6	4
HIVEP1 WILD-TYPE	27	75	45	83

Figure S1250. Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.0066

Table S2633. Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HIVEP1 MUTATED	12	1	4	3	0
HIVEP1 WILD-TYPE	53	58	38	31	57

Figure S1251. Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HIVEP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00607 (Fisher's exact test), Q value = 0.038

Table S2634. Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HIVEP1 MUTATED	3	0	1	6	5	0	5
HIVEP1 WILD-TYPE	33	21	47	50	34	37	15

Figure S1252. Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.075

Table S2635. Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HIVEP1 MUTATED	16	4	2
HIVEP1 WILD-TYPE	110	92	65

Figure S1253. Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.006

Table S2636. Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HIVEP1 MUTATED	8	13	1	0
HIVEP1 WILD-TYPE	48	92	59	68

Figure S1254. Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S2637. Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HIVEP1 MUTATED	3	4	5	4	0	1
HIVEP1 WILD-TYPE	31	14	54	34	19	42

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00939 (Fisher's exact test), Q value = 0.05

Table S2638. Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HIVEP1 MUTATED	11	0	6
HIVEP1 WILD-TYPE	111	51	32

Figure S1255. Get High-res Image Gene #264: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VEZF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.42

Table S2639. Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
VEZF1 MUTATED	0	5	0	0	0
VEZF1 WILD-TYPE	79	121	27	43	12

'VEZF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.46

Table S2640. Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
VEZF1 MUTATED	0	1	0	2
VEZF1 WILD-TYPE	71	75	34	61

'VEZF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.28

Table S2641. Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
VEZF1 MUTATED	3	0	2
VEZF1 WILD-TYPE	75	86	83

'VEZF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.39

Table S2642. Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
VEZF1 MUTATED	0	1	3	1
VEZF1 WILD-TYPE	33	77	48	86

'VEZF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.85

Table S2643. Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
VEZF1 MUTATED	1	1	1	1	0
VEZF1 WILD-TYPE	64	58	41	33	57

'VEZF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00914 (Fisher's exact test), Q value = 0.049

Table S2644. Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
VEZF1 MUTATED	3	0	0	0	0	0	1
VEZF1 WILD-TYPE	33	21	48	56	39	37	19

Figure S1256. Get High-res Image Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.43

Table S2645. Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
VEZF1 MUTATED	4	1	0
VEZF1 WILD-TYPE	122	95	67

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 0.84

Table S2646. Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
VEZF1 MUTATED	1	3	0	1
VEZF1 WILD-TYPE	55	102	60	67

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 0.97

Table S2647. Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
VEZF1 MUTATED	1	0	1	0	0	1
VEZF1 WILD-TYPE	33	18	58	38	19	42

'VEZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.5

Table S2648. Gene #265: 'VEZF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
VEZF1 MUTATED	1	1	1
VEZF1 WILD-TYPE	121	50	37

'SBNO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S2649. Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SBNO1 MUTATED	1	10	3	2	1
SBNO1 WILD-TYPE	78	116	24	41	11

'SBNO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00887 (Fisher's exact test), Q value = 0.048

Table S2650. Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SBNO1 MUTATED	1	11	2	2
SBNO1 WILD-TYPE	70	65	32	61

Figure S1257. Get High-res Image Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SBNO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.13

Table S2651. Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SBNO1 MUTATED	10	3	4
SBNO1 WILD-TYPE	68	83	81

Figure S1258. Get High-res Image Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SBNO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00932 (Fisher's exact test), Q value = 0.05

Table S2652. Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SBNO1 MUTATED	2	4	9	2
SBNO1 WILD-TYPE	31	74	42	85

Figure S1259. Get High-res Image Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.062

Table S2653. Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SBNO1 MUTATED	10	1	2	2	1
SBNO1 WILD-TYPE	55	58	40	32	56

Figure S1260. Get High-res Image Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00563 (Fisher's exact test), Q value = 0.036

Table S2654. Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SBNO1 MUTATED	1	1	1	3	5	0	5
SBNO1 WILD-TYPE	35	20	47	53	34	37	15

Figure S1261. Get High-res Image Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.09

Table S2655. Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SBNO1 MUTATED	13	2	2
SBNO1 WILD-TYPE	113	94	65

Figure S1262. Get High-res Image Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00167 (Fisher's exact test), Q value = 0.018

Table S2656. Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SBNO1 MUTATED	9	6	2	0
SBNO1 WILD-TYPE	47	99	58	68

Figure S1263. Get High-res Image Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.36

Table S2657. Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SBNO1 MUTATED	1	2	5	5	0	1
SBNO1 WILD-TYPE	33	16	54	33	19	42

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0645 (Fisher's exact test), Q value = 0.16

Table S2658. Gene #266: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SBNO1 MUTATED	6	2	6
SBNO1 WILD-TYPE	116	49	32

'WASF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.78

Table S2659. Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WASF3 MUTATED	2	6	2	1	0
WASF3 WILD-TYPE	77	120	25	42	12

'WASF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.005

Table S2660. Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WASF3 MUTATED	0	9	1	0
WASF3 WILD-TYPE	71	67	33	63

Figure S1264. Get High-res Image Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WASF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2661. Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
WASF3 MUTATED	3	3	3
WASF3 WILD-TYPE	75	83	82

'WASF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.066

Table S2662. Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
WASF3 MUTATED	0	1	6	2
WASF3 WILD-TYPE	33	77	45	85

Figure S1265. Get High-res Image Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.21

Table S2663. Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
WASF3 MUTATED	6	1	0	1	1
WASF3 WILD-TYPE	59	58	42	33	56

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.035 (Fisher's exact test), Q value = 0.11

Table S2664. Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
WASF3 MUTATED	0	1	1	1	3	0	3
WASF3 WILD-TYPE	36	20	47	55	36	37	17

Figure S1266. Get High-res Image Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.33

Table S2665. Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
WASF3 MUTATED	8	2	1
WASF3 WILD-TYPE	118	94	66

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00226 (Fisher's exact test), Q value = 0.022

Table S2666. Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
WASF3 MUTATED	7	2	2	0
WASF3 WILD-TYPE	49	103	58	68

Figure S1267. Get High-res Image Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.67

Table S2667. Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
WASF3 MUTATED	0	1	4	1	1	1
WASF3 WILD-TYPE	34	17	55	37	18	42

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 0.93

Table S2668. Gene #267: 'WASF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
WASF3 MUTATED	4	2	2
WASF3 WILD-TYPE	118	49	36

'RAB14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.61

Table S2669. Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RAB14 MUTATED	1	4	2	1	0
RAB14 WILD-TYPE	78	122	25	42	12

'RAB14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.35

Table S2670. Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RAB14 MUTATED	1	4	1	0
RAB14 WILD-TYPE	70	72	33	63

'RAB14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.11

Table S2671. Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RAB14 MUTATED	6	1	1
RAB14 WILD-TYPE	72	85	84

Figure S1268. Get High-res Image Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RAB14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00133 (Fisher's exact test), Q value = 0.015

Table S2672. Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RAB14 MUTATED	0	2	6	0
RAB14 WILD-TYPE	33	76	45	87

Figure S1269. Get High-res Image Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RAB14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.77

Table S2673. Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RAB14 MUTATED	2	0	1	1	1
RAB14 WILD-TYPE	63	59	41	33	56

'RAB14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.3

Table S2674. Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RAB14 MUTATED	0	0	0	1	1	1	2
RAB14 WILD-TYPE	36	21	48	55	38	36	18

'RAB14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.36

Table S2675. Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RAB14 MUTATED	6	1	1
RAB14 WILD-TYPE	120	95	66

'RAB14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0344 (Fisher's exact test), Q value = 0.11

Table S2676. Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RAB14 MUTATED	5	1	1	1
RAB14 WILD-TYPE	51	104	59	67

Figure S1270. Get High-res Image Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RAB14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.6

Table S2677. Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RAB14 MUTATED	3	0	1	1	0	1
RAB14 WILD-TYPE	31	18	58	37	19	42

'RAB14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S2678. Gene #268: 'RAB14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RAB14 MUTATED	2	1	3
RAB14 WILD-TYPE	120	50	35

'ZNF124 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.43

Table S2679. Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF124 MUTATED	1	7	1	0	0
ZNF124 WILD-TYPE	78	119	26	43	12

'ZNF124 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.52

Table S2680. Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF124 MUTATED	1	4	0	1
ZNF124 WILD-TYPE	70	72	34	62

'ZNF124 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.12

Table S2681. Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZNF124 MUTATED	5	0	3
ZNF124 WILD-TYPE	73	86	82

Figure S1271. Get High-res Image Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF124 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S2682. Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZNF124 MUTATED	1	2	4	1
ZNF124 WILD-TYPE	32	76	47	86

'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00538 (Fisher's exact test), Q value = 0.036

Table S2683. Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF124 MUTATED	6	0	2	0	0
ZNF124 WILD-TYPE	59	59	40	34	57

Figure S1272. Get High-res Image Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0063 (Fisher's exact test), Q value = 0.039

Table S2684. Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF124 MUTATED	1	0	0	2	1	0	4
ZNF124 WILD-TYPE	35	21	48	54	38	37	16

Figure S1273. Get High-res Image Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S2685. Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF124 MUTATED	7	1	1
ZNF124 WILD-TYPE	119	95	66

'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.059

Table S2686. Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF124 MUTATED	5	4	0	0
ZNF124 WILD-TYPE	51	101	60	68

Figure S1274. Get High-res Image Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.51

Table S2687. Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZNF124 MUTATED	0	1	2	2	0	0
ZNF124 WILD-TYPE	34	17	57	36	19	43

'ZNF124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.57

Table S2688. Gene #269: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZNF124 MUTATED	4	0	1
ZNF124 WILD-TYPE	118	51	37

'RB1CC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.089

Table S2689. Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RB1CC1 MUTATED	0	7	0	1	2
RB1CC1 WILD-TYPE	79	119	27	42	10

Figure S1275. Get High-res Image Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RB1CC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0064 (Fisher's exact test), Q value = 0.039

Table S2690. Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RB1CC1 MUTATED	0	7	0	1
RB1CC1 WILD-TYPE	71	69	34	62

Figure S1276. Get High-res Image Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RB1CC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0926 (Fisher's exact test), Q value = 0.2

Table S2691. Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RB1CC1 MUTATED	6	1	2
RB1CC1 WILD-TYPE	72	85	83

'RB1CC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.27

Table S2692. Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RB1CC1 MUTATED	2	1	4	2
RB1CC1 WILD-TYPE	31	77	47	85

'RB1CC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00814 (Fisher's exact test), Q value = 0.046

Table S2693. Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RB1CC1 MUTATED	7	1	0	1	0
RB1CC1 WILD-TYPE	58	58	42	33	57

Figure S1277. Get High-res Image Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RB1CC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00088 (Fisher's exact test), Q value = 0.012

Table S2694. Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RB1CC1 MUTATED	1	0	1	2	0	0	5
RB1CC1 WILD-TYPE	35	21	47	54	39	37	15

Figure S1278. Get High-res Image Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.32

Table S2695. Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RB1CC1 MUTATED	7	1	2
RB1CC1 WILD-TYPE	119	95	65

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.063

Table S2696. Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RB1CC1 MUTATED	6	3	0	1
RB1CC1 WILD-TYPE	50	102	60	67

Figure S1279. Get High-res Image Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0985 (Fisher's exact test), Q value = 0.2

Table S2697. Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RB1CC1 MUTATED	1	2	1	3	0	0
RB1CC1 WILD-TYPE	33	16	58	35	19	43

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S2698. Gene #270: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RB1CC1 MUTATED	4	0	3
RB1CC1 WILD-TYPE	118	51	35

'HIVEP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 0.91

Table S2699. Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HIVEP3 MUTATED	6	15	2	3	1
HIVEP3 WILD-TYPE	73	111	25	40	11

'HIVEP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.073

Table S2700. Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HIVEP3 MUTATED	3	12	6	3
HIVEP3 WILD-TYPE	68	64	28	60

Figure S1280. Get High-res Image Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIVEP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0029

Table S2701. Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HIVEP3 MUTATED	14	0	8
HIVEP3 WILD-TYPE	64	86	77

Figure S1281. Get High-res Image Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HIVEP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.21

Table S2702. Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HIVEP3 MUTATED	4	8	7	3
HIVEP3 WILD-TYPE	29	70	44	84

'HIVEP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0043 (Fisher's exact test), Q value = 0.031

Table S2703. Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HIVEP3 MUTATED	14	1	4	2	4
HIVEP3 WILD-TYPE	51	58	38	32	53

Figure S1282. Get High-res Image Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HIVEP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.44

Table S2704. Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HIVEP3 MUTATED	6	2	2	5	4	2	4
HIVEP3 WILD-TYPE	30	19	46	51	35	35	16

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0022 (Fisher's exact test), Q value = 0.021

Table S2705. Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HIVEP3 MUTATED	19	2	6
HIVEP3 WILD-TYPE	107	94	61

Figure S1283. Get High-res Image Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00097 (Fisher's exact test), Q value = 0.013

Table S2706. Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HIVEP3 MUTATED	13	7	1	6
HIVEP3 WILD-TYPE	43	98	59	62

Figure S1284. Get High-res Image Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.21

Table S2707. Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HIVEP3 MUTATED	5	3	9	4	0	1
HIVEP3 WILD-TYPE	29	15	50	34	19	42

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.052

Table S2708. Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HIVEP3 MUTATED	13	1	8
HIVEP3 WILD-TYPE	109	50	30

Figure S1285. Get High-res Image Gene #271: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OTX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.33

Table S2709. Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OTX2 MUTATED	0	7	1	1	0
OTX2 WILD-TYPE	79	119	26	42	12

'OTX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.14

Table S2710. Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OTX2 MUTATED	0	5	0	1
OTX2 WILD-TYPE	71	71	34	62

'OTX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00513 (Fisher's exact test), Q value = 0.035

Table S2711. Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OTX2 MUTATED	6	1	0
OTX2 WILD-TYPE	72	85	85

Figure S1286. Get High-res Image Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OTX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.064

Table S2712. Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OTX2 MUTATED	2	0	4	1
OTX2 WILD-TYPE	31	78	47	86

Figure S1287. Get High-res Image Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OTX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.26

Table S2713. Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OTX2 MUTATED	4	2	0	2	0
OTX2 WILD-TYPE	61	57	42	32	57

'OTX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S2714. Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OTX2 MUTATED	3	0	0	2	1	0	2
OTX2 WILD-TYPE	33	21	48	54	38	37	18

'OTX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.019

Table S2715. Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OTX2 MUTATED	9	0	0
OTX2 WILD-TYPE	117	96	67

Figure S1288. Get High-res Image Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OTX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.059

Table S2716. Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OTX2 MUTATED	5	4	0	0
OTX2 WILD-TYPE	51	101	60	68

Figure S1289. Get High-res Image Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OTX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S2717. Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OTX2 MUTATED	1	2	3	0	0	0
OTX2 WILD-TYPE	33	16	56	38	19	43

'OTX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.068

Table S2718. Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OTX2 MUTATED	2	0	4
OTX2 WILD-TYPE	120	51	34

Figure S1290. Get High-res Image Gene #272: 'OTX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CRYGD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S2719. Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CRYGD MUTATED	1	8	1	1	1
CRYGD WILD-TYPE	78	118	26	42	11

'CRYGD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.059

Table S2720. Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CRYGD MUTATED	0	6	3	1
CRYGD WILD-TYPE	71	70	31	62

Figure S1291. Get High-res Image Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CRYGD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.2

Table S2721. Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CRYGD MUTATED	6	1	3
CRYGD WILD-TYPE	72	85	82

'CRYGD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00339 (Fisher's exact test), Q value = 0.027

Table S2722. Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CRYGD MUTATED	4	2	4	0
CRYGD WILD-TYPE	29	76	47	87

Figure S1292. Get High-res Image Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CRYGD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.31

Table S2723. Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CRYGD MUTATED	5	2	1	2	0
CRYGD WILD-TYPE	60	57	41	32	57

'CRYGD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00527 (Fisher's exact test), Q value = 0.035

Table S2724. Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CRYGD MUTATED	3	0	0	2	1	0	4
CRYGD WILD-TYPE	33	21	48	54	38	37	16

Figure S1293. Get High-res Image Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CRYGD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.73

Table S2725. Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CRYGD MUTATED	7	3	2
CRYGD WILD-TYPE	119	93	65

'CRYGD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0629 (Fisher's exact test), Q value = 0.15

Table S2726. Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CRYGD MUTATED	5	4	3	0
CRYGD WILD-TYPE	51	101	57	68

'CRYGD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S2727. Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CRYGD MUTATED	0	1	2	2	0	3
CRYGD WILD-TYPE	34	17	57	36	19	40

'CRYGD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 0.92

Table S2728. Gene #273: 'CRYGD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CRYGD MUTATED	4	2	2
CRYGD WILD-TYPE	118	49	36

'MSL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.36

Table S2729. Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MSL3 MUTATED	1	8	1	0	0
MSL3 WILD-TYPE	78	118	26	43	12

'MSL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S2730. Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MSL3 MUTATED	0	4	2	4
MSL3 WILD-TYPE	71	72	32	59

'MSL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 0.89

Table S2731. Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MSL3 MUTATED	2	3	4
MSL3 WILD-TYPE	76	83	81

'MSL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.77

Table S2732. Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MSL3 MUTATED	2	3	2	2
MSL3 WILD-TYPE	31	75	49	85

'MSL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S2733. Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MSL3 MUTATED	5	1	1	2	0
MSL3 WILD-TYPE	60	58	41	32	57

'MSL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.27

Table S2734. Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MSL3 MUTATED	2	1	2	0	2	0	2
MSL3 WILD-TYPE	34	20	46	56	37	37	18

'MSL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S2735. Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MSL3 MUTATED	7	3	0
MSL3 WILD-TYPE	119	93	67

'MSL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.35

Table S2736. Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MSL3 MUTATED	3	4	3	0
MSL3 WILD-TYPE	53	101	57	68

'MSL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.73

Table S2737. Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MSL3 MUTATED	0	0	4	2	0	2
MSL3 WILD-TYPE	34	18	55	36	19	41

'MSL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 0.92

Table S2738. Gene #274: 'MSL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MSL3 MUTATED	4	2	2
MSL3 WILD-TYPE	118	49	36

'GPR160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.31

Table S2739. Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPR160 MUTATED	0	7	0	1	0
GPR160 WILD-TYPE	79	119	27	42	12

'GPR160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S2740. Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPR160 MUTATED	1	4	0	0
GPR160 WILD-TYPE	70	72	34	63

'GPR160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S2741. Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GPR160 MUTATED	5	2	1
GPR160 WILD-TYPE	73	84	84

'GPR160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S2742. Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GPR160 MUTATED	1	1	5	1
GPR160 WILD-TYPE	32	77	46	86

Figure S1294. Get High-res Image Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.57

Table S2743. Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GPR160 MUTATED	2	2	2	0	0
GPR160 WILD-TYPE	63	57	40	34	57

'GPR160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 0.91

Table S2744. Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GPR160 MUTATED	1	0	1	3	1	0	0
GPR160 WILD-TYPE	35	21	47	53	38	37	20

'GPR160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.28

Table S2745. Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GPR160 MUTATED	6	2	0
GPR160 WILD-TYPE	120	94	67

'GPR160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.34

Table S2746. Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GPR160 MUTATED	4	2	1	1
GPR160 WILD-TYPE	52	103	59	67

'GPR160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.82

Table S2747. Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GPR160 MUTATED	1	1	2	0	0	1
GPR160 WILD-TYPE	33	17	57	38	19	42

'GPR160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.67

Table S2748. Gene #275: 'GPR160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GPR160 MUTATED	2	2	1
GPR160 WILD-TYPE	120	49	37

'KIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00946 (Fisher's exact test), Q value = 0.05

Table S2749. Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIN MUTATED	0	11	0	0	0
KIN WILD-TYPE	79	115	27	43	12

Figure S1295. Get High-res Image Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.25

Table S2750. Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIN MUTATED	1	5	3	1
KIN WILD-TYPE	70	71	31	62

'KIN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00992 (Fisher's exact test), Q value = 0.051

Table S2751. Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIN MUTATED	6	0	2
KIN WILD-TYPE	72	86	83

Figure S1296. Get High-res Image Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0769 (Fisher's exact test), Q value = 0.18

Table S2752. Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIN MUTATED	2	1	4	1
KIN WILD-TYPE	31	77	47	86

'KIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.062

Table S2753. Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIN MUTATED	7	1	2	0	0
KIN WILD-TYPE	58	58	40	34	57

Figure S1297. Get High-res Image Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S2754. Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIN MUTATED	1	0	1	3	2	0	3
KIN WILD-TYPE	35	21	47	53	37	37	17

'KIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00395 (Fisher's exact test), Q value = 0.03

Table S2755. Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIN MUTATED	10	0	1
KIN WILD-TYPE	116	96	66

Figure S1298. Get High-res Image Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00394 (Fisher's exact test), Q value = 0.03

Table S2756. Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIN MUTATED	7	3	0	1
KIN WILD-TYPE	49	102	60	67

Figure S1299. Get High-res Image Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.39

Table S2757. Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIN MUTATED	1	2	4	2	0	0
KIN WILD-TYPE	33	16	55	36	19	43

'KIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.24

Table S2758. Gene #276: 'KIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIN MUTATED	6	0	3
KIN WILD-TYPE	116	51	35

'SRCIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S2759. Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SRCIN1 MUTATED	2	8	3	0	0
SRCIN1 WILD-TYPE	77	118	24	43	12

'SRCIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.51

Table S2760. Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SRCIN1 MUTATED	2	5	2	1
SRCIN1 WILD-TYPE	69	71	32	62

'SRCIN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00129 (Fisher's exact test), Q value = 0.015

Table S2761. Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SRCIN1 MUTATED	8	0	2
SRCIN1 WILD-TYPE	70	86	83

Figure S1300. Get High-res Image Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SRCIN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00682 (Fisher's exact test), Q value = 0.041

Table S2762. Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SRCIN1 MUTATED	2	1	6	1
SRCIN1 WILD-TYPE	31	77	45	86

Figure S1301. Get High-res Image Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SRCIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.11

Table S2763. Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SRCIN1 MUTATED	5	0	2	4	1
SRCIN1 WILD-TYPE	60	59	40	30	56

Figure S1302. Get High-res Image Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SRCIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00908 (Fisher's exact test), Q value = 0.049

Table S2764. Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SRCIN1 MUTATED	1	0	0	3	6	0	2
SRCIN1 WILD-TYPE	35	21	48	53	33	37	18

Figure S1303. Get High-res Image Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.16

Table S2765. Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SRCIN1 MUTATED	10	2	1
SRCIN1 WILD-TYPE	116	94	66

'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.075

Table S2766. Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SRCIN1 MUTATED	7	2	1	3
SRCIN1 WILD-TYPE	49	103	59	65

Figure S1304. Get High-res Image Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 0.82

Table S2767. Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SRCIN1 MUTATED	1	1	4	3	0	1
SRCIN1 WILD-TYPE	33	17	55	35	19	42

'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.13

Table S2768. Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SRCIN1 MUTATED	4	1	5
SRCIN1 WILD-TYPE	118	50	33

Figure S1305. Get High-res Image Gene #277: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KDELR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2769. Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KDELR3 MUTATED	1	2	0	0	0
KDELR3 WILD-TYPE	78	124	27	43	12

'KDELR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.77

Table S2770. Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KDELR3 MUTATED	1	1	1	0
KDELR3 WILD-TYPE	70	75	33	63

'KDELR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.33

Table S2771. Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KDELR3 MUTATED	2	0	1
KDELR3 WILD-TYPE	76	86	84

'KDELR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.48

Table S2772. Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KDELR3 MUTATED	1	1	1	0
KDELR3 WILD-TYPE	32	77	50	87

'KDELR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.57

Table S2773. Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KDELR3 MUTATED	2	0	1
KDELR3 WILD-TYPE	124	96	66

'KDELR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.21

Table S2774. Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KDELR3 MUTATED	2	0	0	1
KDELR3 WILD-TYPE	54	105	60	67

'KDELR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 0.81

Table S2775. Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KDELR3 MUTATED	1	0	2	0	0	0
KDELR3 WILD-TYPE	33	18	57	38	19	43

'KDELR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 0.81

Table S2776. Gene #278: 'KDELR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KDELR3 MUTATED	3	0	0
KDELR3 WILD-TYPE	119	51	38

'FBXO48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.51

Table S2777. Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FBXO48 MUTATED	0	2	1	0	0
FBXO48 WILD-TYPE	79	124	26	43	12

'FBXO48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S2778. Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FBXO48 MUTATED	0	3	0	0
FBXO48 WILD-TYPE	71	73	34	63

'FBXO48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.53

Table S2779. Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FBXO48 MUTATED	1	0	2
FBXO48 WILD-TYPE	77	86	83

'FBXO48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.48

Table S2780. Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FBXO48 MUTATED	1	1	1	0
FBXO48 WILD-TYPE	32	77	50	87

'FBXO48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.47

Table S2781. Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FBXO48 MUTATED	2	0	1	1	0
FBXO48 WILD-TYPE	63	59	41	33	57

'FBXO48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.38

Table S2782. Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FBXO48 MUTATED	0	0	0	1	2	0	1
FBXO48 WILD-TYPE	36	21	48	55	37	37	19

'FBXO48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S2783. Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FBXO48 MUTATED	4	0	0
FBXO48 WILD-TYPE	122	96	67

'FBXO48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0623 (Fisher's exact test), Q value = 0.15

Table S2784. Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FBXO48 MUTATED	3	1	0	0
FBXO48 WILD-TYPE	53	104	60	68

'FBXO48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 0.81

Table S2785. Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FBXO48 MUTATED	1	0	2	0	0	0
FBXO48 WILD-TYPE	33	18	57	38	19	43

'FBXO48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S2786. Gene #279: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FBXO48 MUTATED	1	0	2
FBXO48 WILD-TYPE	121	51	36

'TBC1D22B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.46

Table S2787. Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TBC1D22B MUTATED	0	5	1	1	0
TBC1D22B WILD-TYPE	79	121	26	42	12

'TBC1D22B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.085

Table S2788. Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TBC1D22B MUTATED	0	4	2	0
TBC1D22B WILD-TYPE	71	72	32	63

Figure S1306. Get High-res Image Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TBC1D22B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00271 (Fisher's exact test), Q value = 0.024

Table S2789. Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TBC1D22B MUTATED	5	0	0
TBC1D22B WILD-TYPE	73	86	85

Figure S1307. Get High-res Image Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TBC1D22B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00058 (Fisher's exact test), Q value = 0.0092

Table S2790. Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TBC1D22B MUTATED	0	0	5	0
TBC1D22B WILD-TYPE	33	78	46	87

Figure S1308. Get High-res Image Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TBC1D22B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.34

Table S2791. Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TBC1D22B MUTATED	4	0	1	0	1
TBC1D22B WILD-TYPE	61	59	41	34	56

'TBC1D22B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 0.064

Table S2792. Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TBC1D22B MUTATED	1	0	0	0	3	0	2
TBC1D22B WILD-TYPE	35	21	48	56	36	37	18

Figure S1309. Get High-res Image Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.55

Table S2793. Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TBC1D22B MUTATED	5	1	1
TBC1D22B WILD-TYPE	121	95	66

'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0835 (Fisher's exact test), Q value = 0.18

Table S2794. Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TBC1D22B MUTATED	4	2	1	0
TBC1D22B WILD-TYPE	52	103	59	68

'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.5

Table S2795. Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TBC1D22B MUTATED	0	0	1	3	0	1
TBC1D22B WILD-TYPE	34	18	58	35	19	42

'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.49

Table S2796. Gene #280: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TBC1D22B MUTATED	2	1	2
TBC1D22B WILD-TYPE	120	50	36

'CDH16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.066

Table S2797. Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDH16 MUTATED	1	10	0	0	2
CDH16 WILD-TYPE	78	116	27	43	10

Figure S1310. Get High-res Image Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDH16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.17

Table S2798. Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDH16 MUTATED	1	7	2	1
CDH16 WILD-TYPE	70	69	32	62

'CDH16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00464 (Fisher's exact test), Q value = 0.032

Table S2799. Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CDH16 MUTATED	9	1	2
CDH16 WILD-TYPE	69	85	83

Figure S1311. Get High-res Image Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDH16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.12

Table S2800. Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CDH16 MUTATED	4	3	4	1
CDH16 WILD-TYPE	29	75	47	86

Figure S1312. Get High-res Image Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDH16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.11

Table S2801. Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CDH16 MUTATED	7	1	2	1	0
CDH16 WILD-TYPE	58	58	40	33	57

Figure S1313. Get High-res Image Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDH16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0255 (Fisher's exact test), Q value = 0.09

Table S2802. Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CDH16 MUTATED	1	1	0	2	4	0	3
CDH16 WILD-TYPE	35	20	48	54	35	37	17

Figure S1314. Get High-res Image Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDH16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.065

Table S2803. Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CDH16 MUTATED	11	1	1
CDH16 WILD-TYPE	115	95	66

Figure S1315. Get High-res Image Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDH16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00446 (Fisher's exact test), Q value = 0.032

Table S2804. Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CDH16 MUTATED	8	2	1	2
CDH16 WILD-TYPE	48	103	59	66

Figure S1316. Get High-res Image Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CDH16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.56

Table S2805. Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CDH16 MUTATED	2	0	4	2	0	0
CDH16 WILD-TYPE	32	18	55	36	19	43

'CDH16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S2806. Gene #281: 'CDH16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CDH16 MUTATED	5	0	3
CDH16 WILD-TYPE	117	51	35

'GLT8D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S2807. Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GLT8D1 MUTATED	0	7	1	0	0
GLT8D1 WILD-TYPE	79	119	26	43	12

'GLT8D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.13

Table S2808. Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GLT8D1 MUTATED	0	3	2	0
GLT8D1 WILD-TYPE	71	73	32	63

Figure S1317. Get High-res Image Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GLT8D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0869 (Fisher's exact test), Q value = 0.19

Table S2809. Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GLT8D1 MUTATED	4	0	3
GLT8D1 WILD-TYPE	74	86	82

'GLT8D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S2810. Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GLT8D1 MUTATED	2	1	3	1
GLT8D1 WILD-TYPE	31	77	48	86

'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.13

Table S2811. Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GLT8D1 MUTATED	4	0	3	1	0
GLT8D1 WILD-TYPE	61	59	39	33	57

Figure S1318. Get High-res Image Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0876 (Fisher's exact test), Q value = 0.19

Table S2812. Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GLT8D1 MUTATED	4	0	0	2	1	0	1
GLT8D1 WILD-TYPE	32	21	48	54	38	37	19

'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00454 (Fisher's exact test), Q value = 0.032

Table S2813. Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GLT8D1 MUTATED	8	0	0
GLT8D1 WILD-TYPE	118	96	67

Figure S1319. Get High-res Image Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.12

Table S2814. Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GLT8D1 MUTATED	4	4	0	0
GLT8D1 WILD-TYPE	52	101	60	68

Figure S1320. Get High-res Image Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.24

Table S2815. Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GLT8D1 MUTATED	0	1	4	0	0	0
GLT8D1 WILD-TYPE	34	17	55	38	19	43

'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.58

Table S2816. Gene #282: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GLT8D1 MUTATED	4	0	1
GLT8D1 WILD-TYPE	118	51	37

'TAS2R42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 0.86

Table S2817. Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TAS2R42 MUTATED	2	2	0	0	0
TAS2R42 WILD-TYPE	77	124	27	43	12

'TAS2R42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.14

Table S2818. Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TAS2R42 MUTATED	2	0	2	0
TAS2R42 WILD-TYPE	69	76	32	63

'TAS2R42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2819. Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TAS2R42 MUTATED	1	1	1
TAS2R42 WILD-TYPE	77	85	84

'TAS2R42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.72

Table S2820. Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TAS2R42 MUTATED	1	1	0	1
TAS2R42 WILD-TYPE	32	77	51	86

'TAS2R42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.48

Table S2821. Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TAS2R42 MUTATED	2	0	1	0	0
TAS2R42 WILD-TYPE	63	59	41	34	57

'TAS2R42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.54

Table S2822. Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TAS2R42 MUTATED	1	0	0	1	0	0	1
TAS2R42 WILD-TYPE	35	21	48	55	39	37	19

'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.34

Table S2823. Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TAS2R42 MUTATED	2	0	2
TAS2R42 WILD-TYPE	124	96	65

'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.61

Table S2824. Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TAS2R42 MUTATED	0	2	0	2
TAS2R42 WILD-TYPE	56	103	60	66

'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.53

Table S2825. Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TAS2R42 MUTATED	2	0	1	0	0	0
TAS2R42 WILD-TYPE	32	18	58	38	19	43

'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S2826. Gene #283: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TAS2R42 MUTATED	1	0	2
TAS2R42 WILD-TYPE	121	51	36

'POP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.74

Table S2827. Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
POP1 MUTATED	3	11	1	3	0
POP1 WILD-TYPE	76	115	26	40	12

'POP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.32

Table S2828. Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
POP1 MUTATED	1	6	3	3
POP1 WILD-TYPE	70	70	31	60

'POP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.13

Table S2829. Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
POP1 MUTATED	10	3	4
POP1 WILD-TYPE	68	83	81

Figure S1321. Get High-res Image Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'POP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00832 (Fisher's exact test), Q value = 0.047

Table S2830. Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
POP1 MUTATED	5	3	7	2
POP1 WILD-TYPE	28	75	44	85

Figure S1322. Get High-res Image Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'POP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00661 (Fisher's exact test), Q value = 0.04

Table S2831. Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
POP1 MUTATED	11	2	1	0	3
POP1 WILD-TYPE	54	57	41	34	54

Figure S1323. Get High-res Image Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'POP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00202 (Fisher's exact test), Q value = 0.02

Table S2832. Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
POP1 MUTATED	4	0	1	1	3	2	6
POP1 WILD-TYPE	32	21	47	55	36	35	14

Figure S1324. Get High-res Image Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'POP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00106 (Fisher's exact test), Q value = 0.013

Table S2833. Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
POP1 MUTATED	16	1	2
POP1 WILD-TYPE	110	95	65

Figure S1325. Get High-res Image Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'POP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00113 (Fisher's exact test), Q value = 0.014

Table S2834. Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
POP1 MUTATED	10	5	0	4
POP1 WILD-TYPE	46	100	60	64

Figure S1326. Get High-res Image Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'POP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.48

Table S2835. Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
POP1 MUTATED	2	1	4	3	2	0
POP1 WILD-TYPE	32	17	55	35	17	43

'POP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.13

Table S2836. Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
POP1 MUTATED	8	0	4
POP1 WILD-TYPE	114	51	34

Figure S1327. Get High-res Image Gene #284: 'POP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PIGO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.074

Table S2837. Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIGO MUTATED	0	9	0	0	1
PIGO WILD-TYPE	79	117	27	43	11

Figure S1328. Get High-res Image Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIGO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.0069

Table S2838. Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIGO MUTATED	0	9	1	0
PIGO WILD-TYPE	71	67	33	63

Figure S1329. Get High-res Image Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIGO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.2

Table S2839. Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PIGO MUTATED	6	1	2
PIGO WILD-TYPE	72	85	83

'PIGO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00899 (Fisher's exact test), Q value = 0.049

Table S2840. Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PIGO MUTATED	2	2	5	0
PIGO WILD-TYPE	31	76	46	87

Figure S1330. Get High-res Image Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIGO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.1

Table S2841. Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PIGO MUTATED	6	1	1	0	0
PIGO WILD-TYPE	59	58	41	34	57

Figure S1331. Get High-res Image Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIGO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.47

Table S2842. Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PIGO MUTATED	2	0	0	3	2	0	1
PIGO WILD-TYPE	34	21	48	53	37	37	19

'PIGO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.46

Table S2843. Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PIGO MUTATED	7	2	1
PIGO WILD-TYPE	119	94	66

'PIGO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0013 (Fisher's exact test), Q value = 0.015

Table S2844. Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PIGO MUTATED	7	2	1	0
PIGO WILD-TYPE	49	103	59	68

Figure S1332. Get High-res Image Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PIGO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S2845. Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PIGO MUTATED	2	0	2	3	0	1
PIGO WILD-TYPE	32	18	57	35	19	42

'PIGO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S2846. Gene #285: 'PIGO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PIGO MUTATED	4	1	3
PIGO WILD-TYPE	118	50	35

'NEXN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.39

Table S2847. Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NEXN MUTATED	1	7	0	0	0
NEXN WILD-TYPE	78	119	27	43	12

'NEXN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.28

Table S2848. Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NEXN MUTATED	0	4	0	2
NEXN WILD-TYPE	71	72	34	61

'NEXN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0096 (Fisher's exact test), Q value = 0.05

Table S2849. Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NEXN MUTATED	5	0	1
NEXN WILD-TYPE	73	86	84

Figure S1333. Get High-res Image Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NEXN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S2850. Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NEXN MUTATED	2	2	2	0
NEXN WILD-TYPE	31	76	49	87

'NEXN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.079

Table S2851. Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NEXN MUTATED	5	0	1	0	0
NEXN WILD-TYPE	60	59	41	34	57

Figure S1334. Get High-res Image Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NEXN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.56

Table S2852. Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NEXN MUTATED	2	0	0	2	1	0	1
NEXN WILD-TYPE	34	21	48	54	38	37	19

'NEXN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00446 (Fisher's exact test), Q value = 0.032

Table S2853. Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NEXN MUTATED	8	0	0
NEXN WILD-TYPE	118	96	67

Figure S1335. Get High-res Image Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NEXN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S2854. Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NEXN MUTATED	4	3	0	1
NEXN WILD-TYPE	52	102	60	67

'NEXN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.67

Table S2855. Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NEXN MUTATED	1	1	2	2	0	0
NEXN WILD-TYPE	33	17	57	36	19	43

'NEXN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.55

Table S2856. Gene #286: 'NEXN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NEXN MUTATED	5	0	1
NEXN WILD-TYPE	117	51	37

'CLDN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.22

Table S2857. Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CLDN6 MUTATED	0	7	0	0	0
CLDN6 WILD-TYPE	79	119	27	43	12

'CLDN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00379 (Fisher's exact test), Q value = 0.029

Table S2858. Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CLDN6 MUTATED	0	6	0	0
CLDN6 WILD-TYPE	71	70	34	63

Figure S1336. Get High-res Image Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLDN6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.16

Table S2859. Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CLDN6 MUTATED	4	0	2
CLDN6 WILD-TYPE	74	86	83

'CLDN6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 0.17

Table S2860. Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CLDN6 MUTATED	0	1	4	1
CLDN6 WILD-TYPE	33	77	47	86

'CLDN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.3

Table S2861. Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CLDN6 MUTATED	3	1	0	2	0
CLDN6 WILD-TYPE	62	58	42	32	57

'CLDN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 0.089

Table S2862. Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CLDN6 MUTATED	0	0	1	0	3	0	2
CLDN6 WILD-TYPE	36	21	47	56	36	37	18

Figure S1337. Get High-res Image Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.13

Table S2863. Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CLDN6 MUTATED	6	0	1
CLDN6 WILD-TYPE	120	96	66

Figure S1338. Get High-res Image Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.056

Table S2864. Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CLDN6 MUTATED	5	1	0	1
CLDN6 WILD-TYPE	51	104	60	67

Figure S1339. Get High-res Image Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.057

Table S2865. Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CLDN6 MUTATED	4	1	0	1	0	0
CLDN6 WILD-TYPE	30	17	59	37	19	43

Figure S1340. Get High-res Image Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0926 (Fisher's exact test), Q value = 0.2

Table S2866. Gene #287: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CLDN6 MUTATED	3	0	3
CLDN6 WILD-TYPE	119	51	35

'MTIF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.058

Table S2867. Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MTIF2 MUTATED	0	13	1	1	0
MTIF2 WILD-TYPE	79	113	26	42	12

Figure S1341. Get High-res Image Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTIF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00343 (Fisher's exact test), Q value = 0.027

Table S2868. Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MTIF2 MUTATED	0	8	3	1
MTIF2 WILD-TYPE	71	68	31	62

Figure S1342. Get High-res Image Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MTIF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.099

Table S2869. Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MTIF2 MUTATED	8	1	4
MTIF2 WILD-TYPE	70	85	81

Figure S1343. Get High-res Image Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MTIF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.12

Table S2870. Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MTIF2 MUTATED	1	5	6	1
MTIF2 WILD-TYPE	32	73	45	86

Figure S1344. Get High-res Image Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.085

Table S2871. Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MTIF2 MUTATED	7	1	2	3	0
MTIF2 WILD-TYPE	58	58	40	31	57

Figure S1345. Get High-res Image Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.18

Table S2872. Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MTIF2 MUTATED	2	2	0	3	4	0	2
MTIF2 WILD-TYPE	34	19	48	53	35	37	18

'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00863 (Fisher's exact test), Q value = 0.048

Table S2873. Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MTIF2 MUTATED	12	3	0
MTIF2 WILD-TYPE	114	93	67

Figure S1346. Get High-res Image Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S2874. Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MTIF2 MUTATED	5	7	2	1
MTIF2 WILD-TYPE	51	98	58	67

'MTIF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.41

Table S2875. Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MTIF2 MUTATED	1	3	3	2	0	1
MTIF2 WILD-TYPE	33	15	56	36	19	42

'MTIF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.35

Table S2876. Gene #288: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MTIF2 MUTATED	4	2	4
MTIF2 WILD-TYPE	118	49	34

'HAUS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.28

Table S2877. Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HAUS6 MUTATED	1	9	1	0	0
HAUS6 WILD-TYPE	78	117	26	43	12

'HAUS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 0.12

Table S2878. Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HAUS6 MUTATED	1	7	0	1
HAUS6 WILD-TYPE	70	69	34	62

Figure S1347. Get High-res Image Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HAUS6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00923 (Fisher's exact test), Q value = 0.05

Table S2879. Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HAUS6 MUTATED	7	0	4
HAUS6 WILD-TYPE	71	86	81

Figure S1348. Get High-res Image Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HAUS6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00076 (Fisher's exact test), Q value = 0.011

Table S2880. Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HAUS6 MUTATED	0	4	7	0
HAUS6 WILD-TYPE	33	74	44	87

Figure S1349. Get High-res Image Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.28

Table S2881. Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HAUS6 MUTATED	5	0	2	1	1
HAUS6 WILD-TYPE	60	59	40	33	56

'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.45

Table S2882. Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HAUS6 MUTATED	1	0	0	4	3	1	0
HAUS6 WILD-TYPE	35	21	48	52	36	36	20

'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00393 (Fisher's exact test), Q value = 0.03

Table S2883. Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HAUS6 MUTATED	10	0	1
HAUS6 WILD-TYPE	116	96	66

Figure S1350. Get High-res Image Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00375 (Fisher's exact test), Q value = 0.029

Table S2884. Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HAUS6 MUTATED	7	3	0	1
HAUS6 WILD-TYPE	49	102	60	67

Figure S1351. Get High-res Image Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HAUS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.41

Table S2885. Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HAUS6 MUTATED	3	0	4	2	0	0
HAUS6 WILD-TYPE	31	18	55	36	19	43

'HAUS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.29

Table S2886. Gene #289: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HAUS6 MUTATED	7	0	2
HAUS6 WILD-TYPE	115	51	36

'PLEKHO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.37

Table S2887. Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLEKHO1 MUTATED	0	6	0	1	0
PLEKHO1 WILD-TYPE	79	120	27	42	12

'PLEKHO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.31

Table S2888. Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLEKHO1 MUTATED	0	2	2	1
PLEKHO1 WILD-TYPE	71	74	32	62

'PLEKHO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.092

Table S2889. Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PLEKHO1 MUTATED	5	0	2
PLEKHO1 WILD-TYPE	73	86	83

Figure S1352. Get High-res Image Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PLEKHO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.064

Table S2890. Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PLEKHO1 MUTATED	2	0	4	1
PLEKHO1 WILD-TYPE	31	78	47	86

Figure S1353. Get High-res Image Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLEKHO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.45

Table S2891. Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PLEKHO1 MUTATED	4	1	1	1	0
PLEKHO1 WILD-TYPE	61	58	41	33	57

'PLEKHO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.27

Table S2892. Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PLEKHO1 MUTATED	3	1	0	1	2	0	0
PLEKHO1 WILD-TYPE	33	20	48	55	37	37	20

'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00931 (Fisher's exact test), Q value = 0.05

Table S2893. Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PLEKHO1 MUTATED	7	0	0
PLEKHO1 WILD-TYPE	119	96	67

Figure S1354. Get High-res Image Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0899 (Fisher's exact test), Q value = 0.19

Table S2894. Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PLEKHO1 MUTATED	3	4	0	0
PLEKHO1 WILD-TYPE	53	101	60	68

'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.58

Table S2895. Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PLEKHO1 MUTATED	1	0	3	0	0	0
PLEKHO1 WILD-TYPE	33	18	56	38	19	43

'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.71

Table S2896. Gene #290: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PLEKHO1 MUTATED	3	0	1
PLEKHO1 WILD-TYPE	119	51	37

'ASPN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S2897. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ASPN MUTATED	0	5	1	0	0
ASPN WILD-TYPE	79	121	26	43	12

'ASPN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 0.15

Table S2898. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ASPN MUTATED	0	4	1	0
ASPN WILD-TYPE	71	72	33	63

'ASPN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.56

Table S2899. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ASPN MUTATED	3	1	2
ASPN WILD-TYPE	75	85	83

'ASPN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S2900. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ASPN MUTATED	1	2	3	0
ASPN WILD-TYPE	32	76	48	87

'ASPN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.27

Table S2901. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ASPN MUTATED	3	0	2	1	0
ASPN WILD-TYPE	62	59	40	33	57

'ASPN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 0.2

Table S2902. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ASPN MUTATED	0	0	0	2	2	0	2
ASPN WILD-TYPE	36	21	48	54	37	37	18

'ASPN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.078

Table S2903. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ASPN MUTATED	6	0	0
ASPN WILD-TYPE	120	96	67

Figure S1355. Get High-res Image Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ASPN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.59

Table S2904. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ASPN MUTATED	1	4	0	1
ASPN WILD-TYPE	55	101	60	67

'ASPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.69

Table S2905. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ASPN MUTATED	1	1	1	1	0	0
ASPN WILD-TYPE	33	17	58	37	19	43

'ASPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.49

Table S2906. Gene #291: 'ASPN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ASPN MUTATED	4	0	0
ASPN WILD-TYPE	118	51	38

'HTR1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.22

Table S2907. Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HTR1E MUTATED	0	6	0	2	1
HTR1E WILD-TYPE	79	120	27	41	11

'HTR1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.13

Table S2908. Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HTR1E MUTATED	2	6	0	0
HTR1E WILD-TYPE	69	70	34	63

Figure S1356. Get High-res Image Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HTR1E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.2

Table S2909. Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HTR1E MUTATED	6	1	2
HTR1E WILD-TYPE	72	85	83

'HTR1E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.27

Table S2910. Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HTR1E MUTATED	2	1	4	2
HTR1E WILD-TYPE	31	77	47	85

'HTR1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 0.2

Table S2911. Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HTR1E MUTATED	3	0	2	0	0
HTR1E WILD-TYPE	62	59	40	34	57

'HTR1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S2912. Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HTR1E MUTATED	1	0	0	2	1	0	1
HTR1E WILD-TYPE	35	21	48	54	38	37	19

'HTR1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.11

Table S2913. Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HTR1E MUTATED	7	0	2
HTR1E WILD-TYPE	119	96	65

Figure S1357. Get High-res Image Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HTR1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0497 (Fisher's exact test), Q value = 0.13

Table S2914. Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HTR1E MUTATED	5	3	0	1
HTR1E WILD-TYPE	51	102	60	67

Figure S1358. Get High-res Image Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HTR1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.51

Table S2915. Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HTR1E MUTATED	1	1	2	3	0	0
HTR1E WILD-TYPE	33	17	57	35	19	43

'HTR1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.39

Table S2916. Gene #292: 'HTR1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HTR1E MUTATED	5	0	2
HTR1E WILD-TYPE	117	51	36

'KLC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.52

Table S2917. Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KLC2 MUTATED	2	8	1	0	0
KLC2 WILD-TYPE	77	118	26	43	12

'KLC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.75

Table S2918. Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KLC2 MUTATED	3	3	2	1
KLC2 WILD-TYPE	68	73	32	62

'KLC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S2919. Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KLC2 MUTATED	5	1	1
KLC2 WILD-TYPE	73	85	84

'KLC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.095

Table S2920. Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KLC2 MUTATED	3	2	2	0
KLC2 WILD-TYPE	30	76	49	87

Figure S1359. Get High-res Image Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KLC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.18

Table S2921. Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KLC2 MUTATED	4	0	2	1	0
KLC2 WILD-TYPE	61	59	40	33	57

'KLC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.071

Table S2922. Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KLC2 MUTATED	0	0	0	2	2	0	3
KLC2 WILD-TYPE	36	21	48	54	37	37	17

Figure S1360. Get High-res Image Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KLC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00557 (Fisher's exact test), Q value = 0.036

Table S2923. Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KLC2 MUTATED	10	1	0
KLC2 WILD-TYPE	116	95	67

Figure S1361. Get High-res Image Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KLC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.066

Table S2924. Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KLC2 MUTATED	6	4	1	0
KLC2 WILD-TYPE	50	101	59	68

Figure S1362. Get High-res Image Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KLC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S2925. Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KLC2 MUTATED	0	2	3	2	0	0
KLC2 WILD-TYPE	34	16	56	36	19	43

'KLC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 0.81

Table S2926. Gene #293: 'KLC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KLC2 MUTATED	4	1	2
KLC2 WILD-TYPE	118	50	36

'BMPR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.11

Table S2927. Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BMPR1B MUTATED	0	4	0	1	2
BMPR1B WILD-TYPE	79	122	27	42	10

Figure S1363. Get High-res Image Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BMPR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.13

Table S2928. Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BMPR1B MUTATED	0	3	2	0
BMPR1B WILD-TYPE	71	73	32	63

Figure S1364. Get High-res Image Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BMPR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2929. Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BMPR1B MUTATED	1	2	2
BMPR1B WILD-TYPE	77	84	83

'BMPR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 0.96

Table S2930. Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BMPR1B MUTATED	1	1	1	2
BMPR1B WILD-TYPE	32	77	50	85

'BMPR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.48

Table S2931. Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BMPR1B MUTATED	3	1	1	2	0
BMPR1B WILD-TYPE	62	58	41	32	57

'BMPR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.27

Table S2932. Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BMPR1B MUTATED	1	1	0	1	2	0	2
BMPR1B WILD-TYPE	35	20	48	55	37	37	18

'BMPR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.54

Table S2933. Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BMPR1B MUTATED	5	1	1
BMPR1B WILD-TYPE	121	95	66

'BMPR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.035 (Fisher's exact test), Q value = 0.11

Table S2934. Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BMPR1B MUTATED	4	3	0	0
BMPR1B WILD-TYPE	52	102	60	68

Figure S1365. Get High-res Image Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BMPR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.64

Table S2935. Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BMPR1B MUTATED	0	0	1	2	0	0
BMPR1B WILD-TYPE	34	18	58	36	19	43

'BMPR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.66

Table S2936. Gene #294: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BMPR1B MUTATED	2	0	1
BMPR1B WILD-TYPE	120	51	37

'PAPD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.051

Table S2937. Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PAPD4 MUTATED	0	4	2	0	2
PAPD4 WILD-TYPE	79	122	25	43	10

Figure S1366. Get High-res Image Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAPD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.22

Table S2938. Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PAPD4 MUTATED	1	5	1	0
PAPD4 WILD-TYPE	70	71	33	63

'PAPD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.27

Table S2939. Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PAPD4 MUTATED	5	1	2
PAPD4 WILD-TYPE	73	85	83

'PAPD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.3

Table S2940. Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PAPD4 MUTATED	1	2	4	1
PAPD4 WILD-TYPE	32	76	47	86

'PAPD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0875 (Fisher's exact test), Q value = 0.19

Table S2941. Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PAPD4 MUTATED	4	0	2	1	0
PAPD4 WILD-TYPE	61	59	40	33	57

'PAPD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.069

Table S2942. Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PAPD4 MUTATED	0	0	0	3	1	0	3
PAPD4 WILD-TYPE	36	21	48	53	38	37	17

Figure S1367. Get High-res Image Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PAPD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.79

Table S2943. Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PAPD4 MUTATED	5	2	1
PAPD4 WILD-TYPE	121	94	66

'PAPD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.33

Table S2944. Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PAPD4 MUTATED	3	4	1	0
PAPD4 WILD-TYPE	53	101	59	68

'PAPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 0.87

Table S2945. Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PAPD4 MUTATED	1	1	1	2	0	1
PAPD4 WILD-TYPE	33	17	58	36	19	42

'PAPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2946. Gene #295: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PAPD4 MUTATED	4	1	1
PAPD4 WILD-TYPE	118	50	37

'KIAA1009 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.72

Table S2947. Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1009 MUTATED	3	9	1	1	1
KIAA1009 WILD-TYPE	76	117	26	42	11

'KIAA1009 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.4

Table S2948. Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1009 MUTATED	4	7	2	1
KIAA1009 WILD-TYPE	67	69	32	62

'KIAA1009 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00563 (Fisher's exact test), Q value = 0.036

Table S2949. Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA1009 MUTATED	9	2	1
KIAA1009 WILD-TYPE	69	84	84

Figure S1368. Get High-res Image Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA1009 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.01

Table S2950. Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA1009 MUTATED	5	0	5	2
KIAA1009 WILD-TYPE	28	78	46	85

Figure S1369. Get High-res Image Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1009 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.083

Table S2951. Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA1009 MUTATED	8	0	1	3	3
KIAA1009 WILD-TYPE	57	59	41	31	54

Figure S1370. Get High-res Image Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1009 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00175 (Fisher's exact test), Q value = 0.019

Table S2952. Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA1009 MUTATED	3	0	0	3	4	0	5
KIAA1009 WILD-TYPE	33	21	48	53	35	37	15

Figure S1371. Get High-res Image Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 0.18

Table S2953. Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA1009 MUTATED	11	2	2
KIAA1009 WILD-TYPE	115	94	65

'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.083

Table S2954. Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA1009 MUTATED	7	5	0	3
KIAA1009 WILD-TYPE	49	100	60	65

Figure S1372. Get High-res Image Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.47

Table S2955. Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA1009 MUTATED	2	3	4	2	0	1
KIAA1009 WILD-TYPE	32	15	55	36	19	42

'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00687 (Fisher's exact test), Q value = 0.041

Table S2956. Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA1009 MUTATED	6	0	6
KIAA1009 WILD-TYPE	116	51	32

Figure S1373. Get High-res Image Gene #296: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.18

Table S2957. Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C5ORF42 MUTATED	2	17	2	3	1
C5ORF42 WILD-TYPE	77	109	25	40	11

'C5ORF42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00077 (Fisher's exact test), Q value = 0.011

Table S2958. Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C5ORF42 MUTATED	3	15	4	1
C5ORF42 WILD-TYPE	68	61	30	62

Figure S1374. Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C5ORF42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.081

Table S2959. Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C5ORF42 MUTATED	12	5	3
C5ORF42 WILD-TYPE	66	81	82

Figure S1375. Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C5ORF42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S2960. Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C5ORF42 MUTATED	3	0	14	3
C5ORF42 WILD-TYPE	30	78	37	84

Figure S1376. Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.01

Table S2961. Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C5ORF42 MUTATED	14	1	1	4	3
C5ORF42 WILD-TYPE	51	58	41	30	54

Figure S1377. Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.057

Table S2962. Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C5ORF42 MUTATED	2	1	2	4	7	1	6
C5ORF42 WILD-TYPE	34	20	46	52	32	36	14

Figure S1378. Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00916 (Fisher's exact test), Q value = 0.049

Table S2963. Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C5ORF42 MUTATED	19	4	3
C5ORF42 WILD-TYPE	107	92	64

Figure S1379. Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0042 (Fisher's exact test), Q value = 0.03

Table S2964. Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C5ORF42 MUTATED	12	9	3	2
C5ORF42 WILD-TYPE	44	96	57	66

Figure S1380. Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.41

Table S2965. Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C5ORF42 MUTATED	4	4	4	5	1	2
C5ORF42 WILD-TYPE	30	14	55	33	18	41

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.053

Table S2966. Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C5ORF42 MUTATED	8	3	9
C5ORF42 WILD-TYPE	114	48	29

Figure S1381. Get High-res Image Gene #297: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'YBX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.69

Table S2967. Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
YBX2 MUTATED	0	3	0	1	0
YBX2 WILD-TYPE	79	123	27	42	12

'YBX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.27

Table S2968. Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
YBX2 MUTATED	0	3	0	0
YBX2 WILD-TYPE	71	73	34	63

'YBX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 0.89

Table S2969. Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
YBX2 MUTATED	1	1	2
YBX2 WILD-TYPE	77	85	83

'YBX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.45

Table S2970. Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
YBX2 MUTATED	1	2	1	0
YBX2 WILD-TYPE	32	76	50	87

'YBX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.36

Table S2971. Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
YBX2 MUTATED	2	0	0	1	0
YBX2 WILD-TYPE	63	59	42	33	57

'YBX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.58

Table S2972. Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
YBX2 MUTATED	0	0	0	1	2	0	0
YBX2 WILD-TYPE	36	21	48	55	37	37	20

'YBX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S2973. Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
YBX2 MUTATED	4	0	0
YBX2 WILD-TYPE	122	96	67

'YBX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00137 (Fisher's exact test), Q value = 0.016

Table S2974. Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
YBX2 MUTATED	4	0	0	0
YBX2 WILD-TYPE	52	105	60	68

Figure S1382. Get High-res Image Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'YBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.14

Table S2975. Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
YBX2 MUTATED	2	1	0	0	0	0
YBX2 WILD-TYPE	32	17	59	38	19	43

'YBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00571 (Fisher's exact test), Q value = 0.037

Table S2976. Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
YBX2 MUTATED	0	0	3
YBX2 WILD-TYPE	122	51	35

Figure S1383. Get High-res Image Gene #298: 'YBX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SH3KBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.16

Table S2977. Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SH3KBP1 MUTATED	0	10	1	2	0
SH3KBP1 WILD-TYPE	79	116	26	41	12

'SH3KBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.36

Table S2978. Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SH3KBP1 MUTATED	1	5	2	1
SH3KBP1 WILD-TYPE	70	71	32	62

'SH3KBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S2979. Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SH3KBP1 MUTATED	6	3	3
SH3KBP1 WILD-TYPE	72	83	82

'SH3KBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S2980. Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SH3KBP1 MUTATED	1	3	6	2
SH3KBP1 WILD-TYPE	32	75	45	85

'SH3KBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.13

Table S2981. Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SH3KBP1 MUTATED	7	1	1	0	1
SH3KBP1 WILD-TYPE	58	58	41	34	56

Figure S1384. Get High-res Image Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SH3KBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S2982. Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SH3KBP1 MUTATED	2	0	1	1	4	0	2
SH3KBP1 WILD-TYPE	34	21	47	55	35	37	18

'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.064

Table S2983. Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SH3KBP1 MUTATED	11	1	1
SH3KBP1 WILD-TYPE	115	95	66

Figure S1385. Get High-res Image Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0717 (Fisher's exact test), Q value = 0.17

Table S2984. Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SH3KBP1 MUTATED	6	5	1	1
SH3KBP1 WILD-TYPE	50	100	59	67

'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.5

Table S2985. Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SH3KBP1 MUTATED	2	2	1	1	0	1
SH3KBP1 WILD-TYPE	32	16	58	37	19	42

'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.34

Table S2986. Gene #299: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SH3KBP1 MUTATED	3	1	3
SH3KBP1 WILD-TYPE	119	50	35

'USP15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.29

Table S2987. Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
USP15 MUTATED	0	6	0	0	0
USP15 WILD-TYPE	79	120	27	43	12

'USP15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S2988. Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
USP15 MUTATED	0	1	2	2
USP15 WILD-TYPE	71	75	32	61

'USP15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.56

Table S2989. Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
USP15 MUTATED	3	1	2
USP15 WILD-TYPE	75	85	83

'USP15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.054

Table S2990. Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
USP15 MUTATED	3	1	2	0
USP15 WILD-TYPE	30	77	49	87

Figure S1386. Get High-res Image Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'USP15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.065

Table S2991. Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
USP15 MUTATED	5	0	0	1	0
USP15 WILD-TYPE	60	59	42	33	57

Figure S1387. Get High-res Image Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USP15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.054

Table S2992. Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
USP15 MUTATED	3	0	0	0	1	0	2
USP15 WILD-TYPE	33	21	48	56	38	37	18

Figure S1388. Get High-res Image Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'USP15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.021 (Fisher's exact test), Q value = 0.079

Table S2993. Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
USP15 MUTATED	6	0	0
USP15 WILD-TYPE	120	96	67

Figure S1389. Get High-res Image Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'USP15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S2994. Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
USP15 MUTATED	3	3	0	0
USP15 WILD-TYPE	53	102	60	68

'USP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.58

Table S2995. Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
USP15 MUTATED	1	0	3	0	0	0
USP15 WILD-TYPE	33	18	56	38	19	43

'USP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.71

Table S2996. Gene #300: 'USP15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
USP15 MUTATED	3	0	1
USP15 WILD-TYPE	119	51	37

'IGF2BP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.69

Table S2997. Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IGF2BP3 MUTATED	0	3	0	1	0
IGF2BP3 WILD-TYPE	79	123	27	42	12

'IGF2BP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.11

Table S2998. Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IGF2BP3 MUTATED	0	4	0	0
IGF2BP3 WILD-TYPE	71	72	34	63

Figure S1390. Get High-res Image Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IGF2BP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.43

Table S2999. Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IGF2BP3 MUTATED	2	1	0
IGF2BP3 WILD-TYPE	76	85	85

'IGF2BP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S3000. Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IGF2BP3 MUTATED	1	0	1	1
IGF2BP3 WILD-TYPE	32	78	50	86

'IGF2BP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.56

Table S3001. Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IGF2BP3 MUTATED	3	1	1	0	0
IGF2BP3 WILD-TYPE	62	58	41	34	57

'IGF2BP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S3002. Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IGF2BP3 MUTATED	1	0	0	1	2	0	1
IGF2BP3 WILD-TYPE	35	21	48	55	37	37	19

'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0564 (Fisher's exact test), Q value = 0.15

Table S3003. Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IGF2BP3 MUTATED	5	0	0
IGF2BP3 WILD-TYPE	121	96	67

'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 0.18

Table S3004. Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IGF2BP3 MUTATED	3	2	0	0
IGF2BP3 WILD-TYPE	53	103	60	68

'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.5

Table S3005. Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IGF2BP3 MUTATED	2	0	2	0	0	0
IGF2BP3 WILD-TYPE	32	18	57	38	19	43

'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.31

Table S3006. Gene #301: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IGF2BP3 MUTATED	2	0	2
IGF2BP3 WILD-TYPE	120	51	36

'PLXNA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S3007. Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLXNA2 MUTATED	3	15	2	1	1
PLXNA2 WILD-TYPE	76	111	25	42	11

'PLXNA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 0.19

Table S3008. Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLXNA2 MUTATED	2	10	3	3
PLXNA2 WILD-TYPE	69	66	31	60

'PLXNA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S3009. Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PLXNA2 MUTATED	16	2	3
PLXNA2 WILD-TYPE	62	84	82

Figure S1391. Get High-res Image Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PLXNA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S3010. Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PLXNA2 MUTATED	7	3	11	0
PLXNA2 WILD-TYPE	26	75	40	87

Figure S1392. Get High-res Image Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLXNA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00096 (Fisher's exact test), Q value = 0.013

Table S3011. Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PLXNA2 MUTATED	12	1	1	2	1
PLXNA2 WILD-TYPE	53	58	41	32	56

Figure S1393. Get High-res Image Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PLXNA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00486 (Fisher's exact test), Q value = 0.033

Table S3012. Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PLXNA2 MUTATED	4	0	0	3	4	1	5
PLXNA2 WILD-TYPE	32	21	48	53	35	36	15

Figure S1394. Get High-res Image Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLXNA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.0069

Table S3013. Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PLXNA2 MUTATED	19	2	2
PLXNA2 WILD-TYPE	107	94	65

Figure S1395. Get High-res Image Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLXNA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S3014. Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PLXNA2 MUTATED	14	6	1	2
PLXNA2 WILD-TYPE	42	99	59	66

Figure S1396. Get High-res Image Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLXNA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.28

Table S3015. Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PLXNA2 MUTATED	4	2	7	1	0	1
PLXNA2 WILD-TYPE	30	16	52	37	19	42

'PLXNA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.056

Table S3016. Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PLXNA2 MUTATED	7	1	7
PLXNA2 WILD-TYPE	115	50	31

Figure S1397. Get High-res Image Gene #302: 'PLXNA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MOCS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.4

Table S3017. Gene #303: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MOCS2 MUTATED	0	2	0	2	0
MOCS2 WILD-TYPE	79	124	27	41	12

'MOCS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S3018. Gene #303: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MOCS2 MUTATED	3	1	0
MOCS2 WILD-TYPE	75	85	85

'MOCS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 0.87

Table S3019. Gene #303: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MOCS2 MUTATED	1	1	1	1
MOCS2 WILD-TYPE	32	77	50	86

'MOCS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.8

Table S3020. Gene #303: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MOCS2 MUTATED	2	1	1	0	0
MOCS2 WILD-TYPE	63	58	41	34	57

'MOCS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.32

Table S3021. Gene #303: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MOCS2 MUTATED	2	0	0	1	0	0	1
MOCS2 WILD-TYPE	34	21	48	55	39	37	19

'MOCS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S3022. Gene #303: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MOCS2 MUTATED	4	0	0
MOCS2 WILD-TYPE	122	96	67

'MOCS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.37

Table S3023. Gene #303: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MOCS2 MUTATED	2	2	0	0
MOCS2 WILD-TYPE	54	103	60	68

'PIK3R3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0789 (Fisher's exact test), Q value = 0.18

Table S3024. Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIK3R3 MUTATED	0	6	1	0	1
PIK3R3 WILD-TYPE	79	120	26	43	11

'PIK3R3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.31

Table S3025. Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIK3R3 MUTATED	0	4	1	1
PIK3R3 WILD-TYPE	71	72	33	62

'PIK3R3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.85

Table S3026. Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PIK3R3 MUTATED	3	2	2
PIK3R3 WILD-TYPE	75	84	83

'PIK3R3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.61

Table S3027. Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PIK3R3 MUTATED	0	1	2	4
PIK3R3 WILD-TYPE	33	77	49	83

'PIK3R3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.16

Table S3028. Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PIK3R3 MUTATED	5	1	0	1	0
PIK3R3 WILD-TYPE	60	58	42	33	57

'PIK3R3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.42

Table S3029. Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PIK3R3 MUTATED	2	1	0	1	2	0	1
PIK3R3 WILD-TYPE	34	20	48	55	37	37	19

'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.79

Table S3030. Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PIK3R3 MUTATED	5	2	1
PIK3R3 WILD-TYPE	121	94	66

'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.42

Table S3031. Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PIK3R3 MUTATED	1	5	2	0
PIK3R3 WILD-TYPE	55	100	58	68

'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.61

Table S3032. Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PIK3R3 MUTATED	1	1	1	1	1	0
PIK3R3 WILD-TYPE	33	17	58	37	18	43

'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.57

Table S3033. Gene #304: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PIK3R3 MUTATED	4	0	1
PIK3R3 WILD-TYPE	118	51	37

'CR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00456 (Fisher's exact test), Q value = 0.032

Table S3034. Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CR1 MUTATED	2	19	1	1	2
CR1 WILD-TYPE	77	107	26	42	10

Figure S1398. Get High-res Image Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.14

Table S3035. Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CR1 MUTATED	2	9	5	3
CR1 WILD-TYPE	69	67	29	60

'CR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.092

Table S3036. Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CR1 MUTATED	12	3	7
CR1 WILD-TYPE	66	83	78

Figure S1399. Get High-res Image Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 0.15

Table S3037. Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CR1 MUTATED	4	4	9	5
CR1 WILD-TYPE	29	74	42	82

'CR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S3038. Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CR1 MUTATED	16	1	3	4	0
CR1 WILD-TYPE	49	58	39	30	57

Figure S1400. Get High-res Image Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S3039. Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CR1 MUTATED	2	1	1	7	4	0	9
CR1 WILD-TYPE	34	20	47	49	35	37	11

Figure S1401. Get High-res Image Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S3040. Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CR1 MUTATED	22	3	0
CR1 WILD-TYPE	104	93	67

Figure S1402. Get High-res Image Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00131 (Fisher's exact test), Q value = 0.015

Table S3041. Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CR1 MUTATED	11	11	2	1
CR1 WILD-TYPE	45	94	58	67

Figure S1403. Get High-res Image Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.094

Table S3042. Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CR1 MUTATED	0	2	7	6	0	1
CR1 WILD-TYPE	34	16	52	32	19	42

Figure S1404. Get High-res Image Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.62

Table S3043. Gene #305: 'CR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CR1 MUTATED	10	2	4
CR1 WILD-TYPE	112	49	34

'IL2RG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S3044. Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IL2RG MUTATED	0	6	0	0	0
IL2RG WILD-TYPE	79	120	27	43	12

'IL2RG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.061

Table S3045. Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IL2RG MUTATED	0	5	0	0
IL2RG WILD-TYPE	71	71	34	63

Figure S1405. Get High-res Image Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IL2RG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.065

Table S3046. Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IL2RG MUTATED	5	1	0
IL2RG WILD-TYPE	73	85	85

Figure S1406. Get High-res Image Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IL2RG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0736 (Fisher's exact test), Q value = 0.17

Table S3047. Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IL2RG MUTATED	0	1	4	1
IL2RG WILD-TYPE	33	77	47	86

'IL2RG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.28

Table S3048. Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IL2RG MUTATED	2	0	2	0	0
IL2RG WILD-TYPE	63	59	40	34	57

'IL2RG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 0.85

Table S3049. Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IL2RG MUTATED	1	0	0	2	1	0	0
IL2RG WILD-TYPE	35	21	48	54	38	37	20

'IL2RG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.29

Table S3050. Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IL2RG MUTATED	5	1	0
IL2RG WILD-TYPE	121	95	67

'IL2RG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.34

Table S3051. Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IL2RG MUTATED	3	2	1	0
IL2RG WILD-TYPE	53	103	59	68

'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 0.81

Table S3052. Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IL2RG MUTATED	1	0	3	1	0	0
IL2RG WILD-TYPE	33	18	56	37	19	43

'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3053. Gene #306: 'IL2RG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IL2RG MUTATED	3	1	1
IL2RG WILD-TYPE	119	50	37

'FAM70B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.13

Table S3054. Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM70B MUTATED	0	9	2	1	1
FAM70B WILD-TYPE	79	117	25	42	11

Figure S1407. Get High-res Image Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM70B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.002 (Fisher's exact test), Q value = 0.02

Table S3055. Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM70B MUTATED	0	8	0	1
FAM70B WILD-TYPE	71	68	34	62

Figure S1408. Get High-res Image Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM70B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.54

Table S3056. Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FAM70B MUTATED	5	2	4
FAM70B WILD-TYPE	73	84	81

'FAM70B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0774 (Fisher's exact test), Q value = 0.18

Table S3057. Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FAM70B MUTATED	2	3	5	1
FAM70B WILD-TYPE	31	75	46	86

'FAM70B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0458 (Fisher's exact test), Q value = 0.13

Table S3058. Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FAM70B MUTATED	6	1	2	3	0
FAM70B WILD-TYPE	59	58	40	31	57

Figure S1409. Get High-res Image Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM70B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00946 (Fisher's exact test), Q value = 0.05

Table S3059. Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FAM70B MUTATED	2	0	0	2	5	0	3
FAM70B WILD-TYPE	34	21	48	54	34	37	17

Figure S1410. Get High-res Image Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.066

Table S3060. Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FAM70B MUTATED	11	1	1
FAM70B WILD-TYPE	115	95	66

Figure S1411. Get High-res Image Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0045

Table S3061. Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FAM70B MUTATED	9	3	1	0
FAM70B WILD-TYPE	47	102	59	68

Figure S1412. Get High-res Image Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.42

Table S3062. Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FAM70B MUTATED	1	2	3	1	0	0
FAM70B WILD-TYPE	33	16	56	37	19	43

'FAM70B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0366 (Fisher's exact test), Q value = 0.11

Table S3063. Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FAM70B MUTATED	3	0	4
FAM70B WILD-TYPE	119	51	34

Figure S1413. Get High-res Image Gene #307: 'FAM70B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.23

Table S3064. Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
COL12A1 MUTATED	8	28	4	4	1
COL12A1 WILD-TYPE	71	98	23	39	11

'COL12A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00181 (Fisher's exact test), Q value = 0.019

Table S3065. Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
COL12A1 MUTATED	6	22	3	6
COL12A1 WILD-TYPE	65	54	31	57

Figure S1414. Get High-res Image Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COL12A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00245 (Fisher's exact test), Q value = 0.023

Table S3066. Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
COL12A1 MUTATED	22	7	12
COL12A1 WILD-TYPE	56	79	73

Figure S1415. Get High-res Image Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'COL12A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.31

Table S3067. Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
COL12A1 MUTATED	6	12	13	10
COL12A1 WILD-TYPE	27	66	38	77

'COL12A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S3068. Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
COL12A1 MUTATED	14	5	8	8	6
COL12A1 WILD-TYPE	51	54	34	26	51

'COL12A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00803 (Fisher's exact test), Q value = 0.046

Table S3069. Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
COL12A1 MUTATED	8	2	2	11	11	2	5
COL12A1 WILD-TYPE	28	19	46	45	28	35	15

Figure S1416. Get High-res Image Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S3070. Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
COL12A1 MUTATED	34	9	3
COL12A1 WILD-TYPE	92	87	64

Figure S1417. Get High-res Image Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S3071. Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
COL12A1 MUTATED	21	12	3	10
COL12A1 WILD-TYPE	35	93	57	58

Figure S1418. Get High-res Image Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.27

Table S3072. Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
COL12A1 MUTATED	6	5	15	5	3	3
COL12A1 WILD-TYPE	28	13	44	33	16	40

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00063 (Fisher's exact test), Q value = 0.0097

Table S3073. Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
COL12A1 MUTATED	18	4	15
COL12A1 WILD-TYPE	104	47	23

Figure S1419. Get High-res Image Gene #308: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NFE2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.59

Table S3074. Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NFE2L1 MUTATED	1	7	0	1	0
NFE2L1 WILD-TYPE	78	119	27	42	12

'NFE2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.73

Table S3075. Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NFE2L1 MUTATED	1	3	0	1
NFE2L1 WILD-TYPE	70	73	34	62

'NFE2L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.19

Table S3076. Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NFE2L1 MUTATED	4	0	3
NFE2L1 WILD-TYPE	74	86	82

'NFE2L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0941 (Fisher's exact test), Q value = 0.2

Table S3077. Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NFE2L1 MUTATED	2	3	2	0
NFE2L1 WILD-TYPE	31	75	49	87

'NFE2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.075

Table S3078. Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NFE2L1 MUTATED	4	0	4	1	0
NFE2L1 WILD-TYPE	61	59	38	33	57

Figure S1420. Get High-res Image Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NFE2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.24

Table S3079. Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NFE2L1 MUTATED	1	0	0	4	2	0	2
NFE2L1 WILD-TYPE	35	21	48	52	37	37	18

'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.26

Table S3080. Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NFE2L1 MUTATED	7	1	1
NFE2L1 WILD-TYPE	119	95	66

'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00661 (Fisher's exact test), Q value = 0.04

Table S3081. Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NFE2L1 MUTATED	6	2	0	1
NFE2L1 WILD-TYPE	50	103	60	67

Figure S1421. Get High-res Image Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.62

Table S3082. Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NFE2L1 MUTATED	0	0	2	2	0	0
NFE2L1 WILD-TYPE	34	18	57	36	19	43

'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.12

Table S3083. Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NFE2L1 MUTATED	1	0	3
NFE2L1 WILD-TYPE	121	51	35

Figure S1422. Get High-res Image Gene #309: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TCHP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.36

Table S3084. Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TCHP MUTATED	1	8	1	0	0
TCHP WILD-TYPE	78	118	26	43	12

'TCHP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.7

Table S3085. Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TCHP MUTATED	2	2	2	1
TCHP WILD-TYPE	69	74	32	62

'TCHP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.064

Table S3086. Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TCHP MUTATED	7	1	1
TCHP WILD-TYPE	71	85	84

Figure S1423. Get High-res Image Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TCHP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.094

Table S3087. Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TCHP MUTATED	3	1	4	1
TCHP WILD-TYPE	30	77	47	86

Figure S1424. Get High-res Image Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TCHP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.11

Table S3088. Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TCHP MUTATED	6	0	0	1	2
TCHP WILD-TYPE	59	59	42	33	55

Figure S1425. Get High-res Image Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TCHP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.12

Table S3089. Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TCHP MUTATED	3	0	0	0	2	2	2
TCHP WILD-TYPE	33	21	48	56	37	35	18

Figure S1426. Get High-res Image Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TCHP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.073

Table S3090. Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TCHP MUTATED	8	0	2
TCHP WILD-TYPE	118	96	65

Figure S1427. Get High-res Image Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TCHP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0543 (Fisher's exact test), Q value = 0.14

Table S3091. Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TCHP MUTATED	5	4	0	1
TCHP WILD-TYPE	51	101	60	67

'TCHP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.67

Table S3092. Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TCHP MUTATED	1	1	2	2	1	0
TCHP WILD-TYPE	33	17	57	36	18	43

'TCHP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S3093. Gene #310: 'TCHP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TCHP MUTATED	6	0	1
TCHP WILD-TYPE	116	51	37

'WNT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 0.8

Table S3094. Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WNT1 MUTATED	2	5	0	0	0
WNT1 WILD-TYPE	77	121	27	43	12

'WNT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.32

Table S3095. Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WNT1 MUTATED	2	4	2	0
WNT1 WILD-TYPE	69	72	32	63

'WNT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S3096. Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
WNT1 MUTATED	2	0	4
WNT1 WILD-TYPE	76	86	81

'WNT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3097. Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
WNT1 MUTATED	1	2	1	2
WNT1 WILD-TYPE	32	76	50	85

'WNT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.43

Table S3098. Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
WNT1 MUTATED	3	1	2	2	0
WNT1 WILD-TYPE	62	58	40	32	57

'WNT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.29

Table S3099. Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
WNT1 MUTATED	0	0	1	2	3	0	2
WNT1 WILD-TYPE	36	21	47	54	36	37	18

'WNT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.54

Table S3100. Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
WNT1 MUTATED	5	1	2
WNT1 WILD-TYPE	121	95	65

'WNT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.5

Table S3101. Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
WNT1 MUTATED	3	3	0	2
WNT1 WILD-TYPE	53	102	60	66

'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.67

Table S3102. Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
WNT1 MUTATED	1	1	3	2	0	0
WNT1 WILD-TYPE	33	17	56	36	19	43

'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.39

Table S3103. Gene #311: 'WNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
WNT1 MUTATED	5	0	2
WNT1 WILD-TYPE	117	51	36

'UBC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.56

Table S3104. Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
UBC MUTATED	1	6	1	0	0
UBC WILD-TYPE	78	120	26	43	12

'UBC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.31

Table S3105. Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
UBC MUTATED	0	2	2	1
UBC WILD-TYPE	71	74	32	62

'UBC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00546 (Fisher's exact test), Q value = 0.036

Table S3106. Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
UBC MUTATED	6	1	0
UBC WILD-TYPE	72	85	85

Figure S1428. Get High-res Image Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'UBC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.056

Table S3107. Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
UBC MUTATED	2	1	4	0
UBC WILD-TYPE	31	77	47	87

Figure S1429. Get High-res Image Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UBC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.17

Table S3108. Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
UBC MUTATED	4	0	1	0	0
UBC WILD-TYPE	61	59	41	34	57

'UBC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00585 (Fisher's exact test), Q value = 0.037

Table S3109. Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
UBC MUTATED	0	0	0	2	0	0	3
UBC WILD-TYPE	36	21	48	54	39	37	17

Figure S1430. Get High-res Image Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UBC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.15

Table S3110. Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
UBC MUTATED	7	1	0
UBC WILD-TYPE	119	95	67

'UBC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0185 (Fisher's exact test), Q value = 0.073

Table S3111. Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
UBC MUTATED	5	2	1	0
UBC WILD-TYPE	51	103	59	68

Figure S1431. Get High-res Image Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'UBC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 0.91

Table S3112. Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
UBC MUTATED	0	0	3	1	0	1
UBC WILD-TYPE	34	18	56	37	19	42

'UBC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3113. Gene #312: 'UBC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
UBC MUTATED	3	1	1
UBC WILD-TYPE	119	50	37

'XK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 0.77

Table S3114. Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
XK MUTATED	1	3	1	0	0
XK WILD-TYPE	78	123	26	43	12

'XK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3115. Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
XK MUTATED	1	1	0	1
XK WILD-TYPE	70	75	34	62

'XK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00902 (Fisher's exact test), Q value = 0.049

Table S3116. Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
XK MUTATED	4	0	0
XK WILD-TYPE	74	86	85

Figure S1432. Get High-res Image Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'XK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.071

Table S3117. Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
XK MUTATED	1	0	3	0
XK WILD-TYPE	32	78	48	87

Figure S1433. Get High-res Image Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'XK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 0.92

Table S3118. Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
XK MUTATED	2	1	0	1	1
XK WILD-TYPE	63	58	42	33	56

'XK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 0.93

Table S3119. Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
XK MUTATED	1	0	1	1	1	0	1
XK WILD-TYPE	35	21	47	55	38	37	19

'XK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 0.9

Table S3120. Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
XK MUTATED	3	1	1
XK WILD-TYPE	123	95	66

'XK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.73

Table S3121. Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
XK MUTATED	2	1	1	1
XK WILD-TYPE	54	104	59	67

'XK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 0.97

Table S3122. Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
XK MUTATED	1	0	1	0	0	1
XK WILD-TYPE	33	18	58	38	19	42

'XK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.5

Table S3123. Gene #313: 'XK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
XK MUTATED	1	1	1
XK WILD-TYPE	121	50	37

'CTSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.32

Table S3124. Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTSA MUTATED	0	2	0	0	1
CTSA WILD-TYPE	79	124	27	43	11

'CTSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.46

Table S3125. Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTSA MUTATED	0	1	0	2
CTSA WILD-TYPE	71	75	34	61

'CTSA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3126. Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CTSA MUTATED	1	1	1
CTSA WILD-TYPE	77	85	84

'CTSA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.73

Table S3127. Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CTSA MUTATED	1	1	0	1
CTSA WILD-TYPE	32	77	51	86

'CTSA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.43

Table S3128. Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CTSA MUTATED	3	1	0	0	0
CTSA WILD-TYPE	62	58	42	34	57

'CTSA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S3129. Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CTSA MUTATED	1	0	1	1	1	0	0
CTSA WILD-TYPE	35	21	47	55	38	37	20

'CTSA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.65

Table S3130. Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CTSA MUTATED	3	1	0
CTSA WILD-TYPE	123	95	67

'CTSA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.44

Table S3131. Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CTSA MUTATED	2	1	1	0
CTSA WILD-TYPE	54	104	59	68

'CTSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 0.97

Table S3132. Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CTSA MUTATED	1	0	1	0	0	1
CTSA WILD-TYPE	33	18	58	38	19	42

'CTSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.5

Table S3133. Gene #314: 'CTSA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CTSA MUTATED	1	1	1
CTSA WILD-TYPE	121	50	37

'TMEM41B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.69

Table S3134. Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM41B MUTATED	0	3	0	1	0
TMEM41B WILD-TYPE	79	123	27	42	12

'TMEM41B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 0.91

Table S3135. Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TMEM41B MUTATED	1	2	0	0
TMEM41B WILD-TYPE	70	74	34	63

'TMEM41B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.51

Table S3136. Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TMEM41B MUTATED	2	0	2
TMEM41B WILD-TYPE	76	86	83

'TMEM41B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.059 (Fisher's exact test), Q value = 0.15

Table S3137. Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TMEM41B MUTATED	0	0	3	1
TMEM41B WILD-TYPE	33	78	48	86

'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.48

Table S3138. Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TMEM41B MUTATED	3	0	1
TMEM41B WILD-TYPE	123	96	66

'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.073

Table S3139. Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TMEM41B MUTATED	3	0	0	1
TMEM41B WILD-TYPE	53	105	60	67

Figure S1434. Get High-res Image Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TMEM41B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 0.92

Table S3140. Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TMEM41B MUTATED	1	0	1	1	0	0
TMEM41B WILD-TYPE	33	18	58	37	19	43

'TMEM41B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.24

Table S3141. Gene #315: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TMEM41B MUTATED	1	0	2
TMEM41B WILD-TYPE	121	51	36

'ENTPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.32

Table S3142. Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ENTPD2 MUTATED	0	3	0	0	1
ENTPD2 WILD-TYPE	79	123	27	43	11

'ENTPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S3143. Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ENTPD2 MUTATED	0	2	1	0
ENTPD2 WILD-TYPE	71	74	33	63

'ENTPD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.33

Table S3144. Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ENTPD2 MUTATED	2	0	1
ENTPD2 WILD-TYPE	76	86	84

'ENTPD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.53

Table S3145. Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ENTPD2 MUTATED	1	0	1	1
ENTPD2 WILD-TYPE	32	78	50	86

'ENTPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.8

Table S3146. Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ENTPD2 MUTATED	2	1	1	0	0
ENTPD2 WILD-TYPE	63	58	41	34	57

'ENTPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.78

Table S3147. Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ENTPD2 MUTATED	1	0	1	1	0	0	1
ENTPD2 WILD-TYPE	35	21	47	55	39	37	19

'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.47

Table S3148. Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ENTPD2 MUTATED	3	0	1
ENTPD2 WILD-TYPE	123	96	66

'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.073

Table S3149. Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ENTPD2 MUTATED	3	0	0	1
ENTPD2 WILD-TYPE	53	105	60	67

Figure S1435. Get High-res Image Gene #316: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.18

Table S3150. Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IRS4 MUTATED	3	15	2	1	2
IRS4 WILD-TYPE	76	111	25	42	10

'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00092 (Fisher's exact test), Q value = 0.012

Table S3151. Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IRS4 MUTATED	3	11	5	0
IRS4 WILD-TYPE	68	65	29	63

Figure S1436. Get High-res Image Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IRS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00231 (Fisher's exact test), Q value = 0.022

Table S3152. Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IRS4 MUTATED	13	2	4
IRS4 WILD-TYPE	65	84	81

Figure S1437. Get High-res Image Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IRS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0038

Table S3153. Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IRS4 MUTATED	4	2	11	2
IRS4 WILD-TYPE	29	76	40	85

Figure S1438. Get High-res Image Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.085 (Fisher's exact test), Q value = 0.19

Table S3154. Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IRS4 MUTATED	11	3	3	2	2
IRS4 WILD-TYPE	54	56	39	32	55

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.0077

Table S3155. Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IRS4 MUTATED	2	3	0	4	4	1	7
IRS4 WILD-TYPE	34	18	48	52	35	36	13

Figure S1439. Get High-res Image Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.092

Table S3156. Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IRS4 MUTATED	16	3	4
IRS4 WILD-TYPE	110	93	63

Figure S1440. Get High-res Image Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00754 (Fisher's exact test), Q value = 0.044

Table S3157. Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IRS4 MUTATED	10	9	3	1
IRS4 WILD-TYPE	46	96	57	67

Figure S1441. Get High-res Image Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.59

Table S3158. Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IRS4 MUTATED	4	1	4	5	0	2
IRS4 WILD-TYPE	30	17	55	33	19	41

'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.61

Table S3159. Gene #317: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IRS4 MUTATED	10	2	4
IRS4 WILD-TYPE	112	49	34

'EVL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.17

Table S3160. Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EVL MUTATED	0	6	0	0	1
EVL WILD-TYPE	79	120	27	43	11

'EVL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.4

Table S3161. Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EVL MUTATED	0	3	0	1
EVL WILD-TYPE	71	73	34	62

'EVL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.43

Table S3162. Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EVL MUTATED	4	2	1
EVL WILD-TYPE	74	84	84

'EVL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 0.81

Table S3163. Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EVL MUTATED	1	1	2	3
EVL WILD-TYPE	32	77	49	84

'EVL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.31

Table S3164. Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EVL MUTATED	3	1	0	2	0
EVL WILD-TYPE	62	58	42	32	57

'EVL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.29

Table S3165. Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EVL MUTATED	2	0	1	1	0	0	2
EVL WILD-TYPE	34	21	47	55	39	37	18

'EVL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.41

Table S3166. Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EVL MUTATED	5	2	0
EVL WILD-TYPE	121	94	67

'EVL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.5

Table S3167. Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EVL MUTATED	2	4	1	0
EVL WILD-TYPE	54	101	59	68

'EVL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.42

Table S3168. Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EVL MUTATED	0	0	0	2	0	1
EVL WILD-TYPE	34	18	59	36	19	42

'EVL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.5

Table S3169. Gene #318: 'EVL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EVL MUTATED	1	1	1
EVL WILD-TYPE	121	50	37

'OR5M3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.59

Table S3170. Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR5M3 MUTATED	4	10	0	1	0
OR5M3 WILD-TYPE	75	116	27	42	12

'OR5M3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S3171. Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR5M3 MUTATED	3	8	1	1
OR5M3 WILD-TYPE	68	68	33	62

'OR5M3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.11

Table S3172. Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OR5M3 MUTATED	8	2	2
OR5M3 WILD-TYPE	70	84	83

Figure S1442. Get High-res Image Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OR5M3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.37

Table S3173. Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OR5M3 MUTATED	3	3	4	2
OR5M3 WILD-TYPE	30	75	47	85

'OR5M3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.12

Table S3174. Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OR5M3 MUTATED	6	0	1	4	3
OR5M3 WILD-TYPE	59	59	41	30	54

Figure S1443. Get High-res Image Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OR5M3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.11

Table S3175. Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OR5M3 MUTATED	1	0	0	4	5	1	3
OR5M3 WILD-TYPE	35	21	48	52	34	36	17

Figure S1444. Get High-res Image Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OR5M3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.31

Table S3176. Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OR5M3 MUTATED	9	2	4
OR5M3 WILD-TYPE	117	94	63

'OR5M3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.066

Table S3177. Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OR5M3 MUTATED	8	3	1	3
OR5M3 WILD-TYPE	48	102	59	65

Figure S1445. Get High-res Image Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OR5M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 0.17

Table S3178. Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OR5M3 MUTATED	3	1	2	5	0	0
OR5M3 WILD-TYPE	31	17	57	33	19	43

'OR5M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.22

Table S3179. Gene #319: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OR5M3 MUTATED	8	0	3
OR5M3 WILD-TYPE	114	51	35

'MYEOV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0784 (Fisher's exact test), Q value = 0.18

Table S3180. Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MYEOV MUTATED	0	6	1	0	1
MYEOV WILD-TYPE	79	120	26	43	11

'MYEOV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00956 (Fisher's exact test), Q value = 0.05

Table S3181. Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MYEOV MUTATED	0	6	1	0
MYEOV WILD-TYPE	71	70	33	63

Figure S1446. Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MYEOV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.29

Table S3182. Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MYEOV MUTATED	3	0	3
MYEOV WILD-TYPE	75	86	82

'MYEOV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00454 (Fisher's exact test), Q value = 0.032

Table S3183. Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MYEOV MUTATED	0	0	5	1
MYEOV WILD-TYPE	33	78	46	86

Figure S1447. Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.12

Table S3184. Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MYEOV MUTATED	5	0	2	1	0
MYEOV WILD-TYPE	60	59	40	33	57

Figure S1448. Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MYEOV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 0.14

Table S3185. Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MYEOV MUTATED	0	0	0	3	3	0	2
MYEOV WILD-TYPE	36	21	48	53	36	37	18

'MYEOV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.15

Table S3186. Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MYEOV MUTATED	7	1	0
MYEOV WILD-TYPE	119	95	67

'MYEOV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00132 (Fisher's exact test), Q value = 0.015

Table S3187. Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MYEOV MUTATED	6	2	0	0
MYEOV WILD-TYPE	50	103	60	68

Figure S1449. Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S3188. Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MYEOV MUTATED	1	1	1	3	0	0
MYEOV WILD-TYPE	33	17	58	35	19	43

'MYEOV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0927 (Fisher's exact test), Q value = 0.2

Table S3189. Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MYEOV MUTATED	3	0	3
MYEOV WILD-TYPE	119	51	35

'C15ORF52 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S3190. Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C15ORF52 MUTATED	0	7	1	0	0
C15ORF52 WILD-TYPE	79	119	26	43	12

'C15ORF52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00351 (Fisher's exact test), Q value = 0.028

Table S3191. Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C15ORF52 MUTATED	0	6	0	0
C15ORF52 WILD-TYPE	71	70	34	63

Figure S1450. Get High-res Image Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C15ORF52 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00543 (Fisher's exact test), Q value = 0.036

Table S3192. Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C15ORF52 MUTATED	6	1	0
C15ORF52 WILD-TYPE	72	85	85

Figure S1451. Get High-res Image Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C15ORF52 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.3

Table S3193. Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C15ORF52 MUTATED	2	1	3	1
C15ORF52 WILD-TYPE	31	77	48	86

'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.43

Table S3194. Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C15ORF52 MUTATED	3	1	2	2	0
C15ORF52 WILD-TYPE	62	58	40	32	57

'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0738 (Fisher's exact test), Q value = 0.17

Table S3195. Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C15ORF52 MUTATED	2	0	0	1	3	0	2
C15ORF52 WILD-TYPE	34	21	48	55	36	37	18

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0625 (Fisher's exact test), Q value = 0.15

Table S3196. Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C15ORF52 MUTATED	7	1	0
C15ORF52 WILD-TYPE	119	95	67

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 0.16

Table S3197. Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C15ORF52 MUTATED	3	5	0	0
C15ORF52 WILD-TYPE	53	100	60	68

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.081

Table S3198. Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C15ORF52 MUTATED	1	2	0	3	0	0
C15ORF52 WILD-TYPE	33	16	59	35	19	43

Figure S1452. Get High-res Image Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.069

Table S3199. Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C15ORF52 MUTATED	2	0	4
C15ORF52 WILD-TYPE	120	51	34

Figure S1453. Get High-res Image Gene #321: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PKN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.16

Table S3200. Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PKN2 MUTATED	0	9	0	1	0
PKN2 WILD-TYPE	79	117	27	42	12

'PKN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.061

Table S3201. Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PKN2 MUTATED	0	7	0	2
PKN2 WILD-TYPE	71	69	34	61

Figure S1454. Get High-res Image Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PKN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.48

Table S3202. Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PKN2 MUTATED	4	3	1
PKN2 WILD-TYPE	74	83	84

'PKN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.29

Table S3203. Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PKN2 MUTATED	0	1	4	3
PKN2 WILD-TYPE	33	77	47	84

'PKN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.36

Table S3204. Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PKN2 MUTATED	5	1	0	1	1
PKN2 WILD-TYPE	60	58	42	33	56

'PKN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0341 (Fisher's exact test), Q value = 0.11

Table S3205. Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PKN2 MUTATED	0	0	2	1	5	0	0
PKN2 WILD-TYPE	36	21	46	55	34	37	20

Figure S1455. Get High-res Image Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PKN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.14

Table S3206. Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PKN2 MUTATED	8	2	0
PKN2 WILD-TYPE	118	94	67

'PKN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00898 (Fisher's exact test), Q value = 0.049

Table S3207. Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PKN2 MUTATED	6	2	2	0
PKN2 WILD-TYPE	50	103	58	68

Figure S1456. Get High-res Image Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.76

Table S3208. Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PKN2 MUTATED	3	1	2	1	0	1
PKN2 WILD-TYPE	31	17	57	37	19	42

'PKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00868 (Fisher's exact test), Q value = 0.048

Table S3209. Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PKN2 MUTATED	1	3	4
PKN2 WILD-TYPE	121	48	34

Figure S1457. Get High-res Image Gene #322: 'PKN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IPO11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.4

Table S3210. Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IPO11 MUTATED	1	7	0	2	1
IPO11 WILD-TYPE	78	119	27	41	11

'IPO11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.098

Table S3211. Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IPO11 MUTATED	0	6	2	1
IPO11 WILD-TYPE	71	70	32	62

Figure S1458. Get High-res Image Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IPO11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.22

Table S3212. Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IPO11 MUTATED	6	1	4
IPO11 WILD-TYPE	72	85	81

'IPO11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0789 (Fisher's exact test), Q value = 0.18

Table S3213. Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IPO11 MUTATED	2	3	5	1
IPO11 WILD-TYPE	31	75	46	86

'IPO11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S3214. Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IPO11 MUTATED	6	2	0	2	1
IPO11 WILD-TYPE	59	57	42	32	56

'IPO11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.61

Table S3215. Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IPO11 MUTATED	3	1	0	3	2	1	1
IPO11 WILD-TYPE	33	20	48	53	37	36	19

'IPO11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.07

Table S3216. Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IPO11 MUTATED	10	2	0
IPO11 WILD-TYPE	116	94	67

Figure S1459. Get High-res Image Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IPO11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.068

Table S3217. Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IPO11 MUTATED	7	3	1	1
IPO11 WILD-TYPE	49	102	59	67

Figure S1460. Get High-res Image Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IPO11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 0.88

Table S3218. Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IPO11 MUTATED	1	0	4	1	1	1
IPO11 WILD-TYPE	33	18	55	37	18	42

'IPO11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0721 (Fisher's exact test), Q value = 0.17

Table S3219. Gene #323: 'IPO11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IPO11 MUTATED	3	1	4
IPO11 WILD-TYPE	119	50	34

'INTS12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.52

Table S3220. Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
INTS12 MUTATED	0	5	0	1	0
INTS12 WILD-TYPE	79	121	27	42	12

'INTS12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.4

Table S3221. Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
INTS12 MUTATED	0	3	0	1
INTS12 WILD-TYPE	71	73	34	62

'INTS12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.18

Table S3222. Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
INTS12 MUTATED	4	2	0
INTS12 WILD-TYPE	74	84	85

'INTS12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.036 (Fisher's exact test), Q value = 0.11

Table S3223. Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
INTS12 MUTATED	0	0	4	2
INTS12 WILD-TYPE	33	78	47	85

Figure S1461. Get High-res Image Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'INTS12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.59

Table S3224. Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
INTS12 MUTATED	2	2	0	0	0
INTS12 WILD-TYPE	63	57	42	34	57

'INTS12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.32

Table S3225. Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
INTS12 MUTATED	2	0	0	1	0	0	1
INTS12 WILD-TYPE	34	21	48	55	39	37	19

'INTS12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.29

Table S3226. Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
INTS12 MUTATED	5	1	0
INTS12 WILD-TYPE	121	95	67

'INTS12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0346 (Fisher's exact test), Q value = 0.11

Table S3227. Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
INTS12 MUTATED	4	1	0	1
INTS12 WILD-TYPE	52	104	60	67

Figure S1462. Get High-res Image Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'INTS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.58

Table S3228. Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
INTS12 MUTATED	1	0	2	0	1	0
INTS12 WILD-TYPE	33	18	57	38	18	43

'INTS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.31

Table S3229. Gene #324: 'INTS12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
INTS12 MUTATED	2	0	2
INTS12 WILD-TYPE	120	51	36

'PGBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.068

Table S3230. Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PGBD1 MUTATED	0	10	1	0	1
PGBD1 WILD-TYPE	79	116	26	43	11

Figure S1463. Get High-res Image Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PGBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.12

Table S3231. Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PGBD1 MUTATED	1	6	1	0
PGBD1 WILD-TYPE	70	70	33	63

Figure S1464. Get High-res Image Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PGBD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.14

Table S3232. Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PGBD1 MUTATED	7	1	4
PGBD1 WILD-TYPE	71	85	81

'PGBD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00722 (Fisher's exact test), Q value = 0.042

Table S3233. Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PGBD1 MUTATED	2	2	7	1
PGBD1 WILD-TYPE	31	76	44	86

Figure S1465. Get High-res Image Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PGBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0781 (Fisher's exact test), Q value = 0.18

Table S3234. Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PGBD1 MUTATED	6	1	2	1	0
PGBD1 WILD-TYPE	59	58	40	33	57

'PGBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 0.13

Table S3235. Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PGBD1 MUTATED	1	1	0	4	1	0	3
PGBD1 WILD-TYPE	35	20	48	52	38	37	17

'PGBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.092

Table S3236. Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PGBD1 MUTATED	10	1	1
PGBD1 WILD-TYPE	116	95	66

Figure S1466. Get High-res Image Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PGBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.069

Table S3237. Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PGBD1 MUTATED	6	5	1	0
PGBD1 WILD-TYPE	50	100	59	68

Figure S1467. Get High-res Image Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PGBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.38

Table S3238. Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PGBD1 MUTATED	0	1	4	2	0	0
PGBD1 WILD-TYPE	34	17	55	36	19	43

'PGBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 0.81

Table S3239. Gene #325: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PGBD1 MUTATED	4	1	2
PGBD1 WILD-TYPE	118	50	36

'NCAPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.23

Table S3240. Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NCAPH MUTATED	1	5	3	0	0
NCAPH WILD-TYPE	78	121	24	43	12

'NCAPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 0.94

Table S3241. Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NCAPH MUTATED	1	2	1	2
NCAPH WILD-TYPE	70	74	33	61

'NCAPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S3242. Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NCAPH MUTATED	5	1	3
NCAPH WILD-TYPE	73	85	82

'NCAPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.39

Table S3243. Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NCAPH MUTATED	2	3	3	1
NCAPH WILD-TYPE	31	75	48	86

'NCAPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.56

Table S3244. Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NCAPH MUTATED	3	1	2	1	0
NCAPH WILD-TYPE	62	58	40	33	57

'NCAPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S3245. Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NCAPH MUTATED	3	0	0	2	1	0	1
NCAPH WILD-TYPE	33	21	48	54	38	37	19

'NCAPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.15

Table S3246. Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NCAPH MUTATED	8	2	0
NCAPH WILD-TYPE	118	94	67

'NCAPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 0.61

Table S3247. Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NCAPH MUTATED	3	5	1	1
NCAPH WILD-TYPE	53	100	59	67

'NCAPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.72

Table S3248. Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NCAPH MUTATED	2	0	3	0	0	1
NCAPH WILD-TYPE	32	18	56	38	19	42

'NCAPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.71

Table S3249. Gene #326: 'NCAPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NCAPH MUTATED	3	1	2
NCAPH WILD-TYPE	119	50	36

'AQP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.091

Table S3250. Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AQP8 MUTATED	0	9	1	0	1
AQP8 WILD-TYPE	79	117	26	43	11

Figure S1468. Get High-res Image Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AQP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.16

Table S3251. Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AQP8 MUTATED	0	6	1	2
AQP8 WILD-TYPE	71	70	33	61

'AQP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0047 (Fisher's exact test), Q value = 0.032

Table S3252. Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
AQP8 MUTATED	7	2	0
AQP8 WILD-TYPE	71	84	85

Figure S1469. Get High-res Image Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'AQP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 0.83

Table S3253. Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
AQP8 MUTATED	2	2	2	3
AQP8 WILD-TYPE	31	76	49	84

'AQP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0865 (Fisher's exact test), Q value = 0.19

Table S3254. Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
AQP8 MUTATED	2	1	3	3	0
AQP8 WILD-TYPE	63	58	39	31	57

'AQP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.18

Table S3255. Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
AQP8 MUTATED	0	0	1	3	2	0	3
AQP8 WILD-TYPE	36	21	47	53	37	37	17

'AQP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.16

Table S3256. Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
AQP8 MUTATED	8	3	0
AQP8 WILD-TYPE	118	93	67

'AQP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.25

Table S3257. Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
AQP8 MUTATED	2	7	2	0
AQP8 WILD-TYPE	54	98	58	68

'AQP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.31

Table S3258. Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
AQP8 MUTATED	0	1	1	4	0	2
AQP8 WILD-TYPE	34	17	58	34	19	41

'AQP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S3259. Gene #327: 'AQP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
AQP8 MUTATED	6	1	1
AQP8 WILD-TYPE	116	50	37

'EXO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.069

Table S3260. Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EXO1 MUTATED	0	13	1	2	0
EXO1 WILD-TYPE	79	113	26	41	12

Figure S1470. Get High-res Image Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EXO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0029

Table S3261. Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EXO1 MUTATED	0	10	3	0
EXO1 WILD-TYPE	71	66	31	63

Figure S1471. Get High-res Image Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EXO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.091

Table S3262. Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EXO1 MUTATED	9	2	3
EXO1 WILD-TYPE	69	84	82

Figure S1472. Get High-res Image Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EXO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S3263. Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EXO1 MUTATED	4	0	9	1
EXO1 WILD-TYPE	29	78	42	86

Figure S1473. Get High-res Image Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EXO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.18

Table S3264. Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EXO1 MUTATED	8	2	1	3	1
EXO1 WILD-TYPE	57	57	41	31	56

'EXO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00221 (Fisher's exact test), Q value = 0.021

Table S3265. Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EXO1 MUTATED	1	1	1	3	3	0	6
EXO1 WILD-TYPE	35	20	47	53	36	37	14

Figure S1474. Get High-res Image Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EXO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00817 (Fisher's exact test), Q value = 0.046

Table S3266. Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EXO1 MUTATED	13	2	1
EXO1 WILD-TYPE	113	94	66

Figure S1475. Get High-res Image Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EXO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S3267. Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EXO1 MUTATED	12	2	2	0
EXO1 WILD-TYPE	44	103	58	68

Figure S1476. Get High-res Image Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EXO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 0.75

Table S3268. Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EXO1 MUTATED	1	2	5	2	0	2
EXO1 WILD-TYPE	33	16	54	36	19	41

'EXO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.5

Table S3269. Gene #328: 'EXO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EXO1 MUTATED	6	2	4
EXO1 WILD-TYPE	116	49	34

'PRMT8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.15

Table S3270. Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRMT8 MUTATED	0	8	0	0	0
PRMT8 WILD-TYPE	79	118	27	43	12

'PRMT8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.17

Table S3271. Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRMT8 MUTATED	0	5	0	2
PRMT8 WILD-TYPE	71	71	34	61

'PRMT8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.092

Table S3272. Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PRMT8 MUTATED	5	0	2
PRMT8 WILD-TYPE	73	86	83

Figure S1477. Get High-res Image Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PRMT8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0544 (Fisher's exact test), Q value = 0.14

Table S3273. Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PRMT8 MUTATED	2	2	3	0
PRMT8 WILD-TYPE	31	76	48	87

'PRMT8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.17

Table S3274. Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PRMT8 MUTATED	5	1	0	1	0
PRMT8 WILD-TYPE	60	58	42	33	57

'PRMT8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.33

Table S3275. Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PRMT8 MUTATED	3	0	0	2	2	0	0
PRMT8 WILD-TYPE	33	21	48	54	37	37	20

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00442 (Fisher's exact test), Q value = 0.031

Table S3276. Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PRMT8 MUTATED	8	0	0
PRMT8 WILD-TYPE	118	96	67

Figure S1478. Get High-res Image Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 0.12

Table S3277. Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PRMT8 MUTATED	4	4	0	0
PRMT8 WILD-TYPE	52	101	60	68

Figure S1479. Get High-res Image Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S3278. Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PRMT8 MUTATED	3	1	3	0	0	0
PRMT8 WILD-TYPE	31	17	56	38	19	43

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0358 (Fisher's exact test), Q value = 0.11

Table S3279. Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PRMT8 MUTATED	3	0	4
PRMT8 WILD-TYPE	119	51	34

Figure S1480. Get High-res Image Gene #329: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ACP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.42

Table S3280. Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ACP1 MUTATED	0	5	0	0	0
ACP1 WILD-TYPE	79	121	27	43	12

'ACP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.11

Table S3281. Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ACP1 MUTATED	0	4	0	0
ACP1 WILD-TYPE	71	72	34	63

Figure S1481. Get High-res Image Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.53

Table S3282. Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ACP1 MUTATED	1	0	2
ACP1 WILD-TYPE	77	86	83

'ACP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S3283. Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ACP1 MUTATED	0	0	2	1
ACP1 WILD-TYPE	33	78	49	86

'ACP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.43

Table S3284. Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ACP1 MUTATED	3	1	0	0	0
ACP1 WILD-TYPE	62	58	42	34	57

'ACP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.66

Table S3285. Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ACP1 MUTATED	0	0	1	2	0	0	1
ACP1 WILD-TYPE	36	21	47	54	39	37	19

'ACP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.32

Table S3286. Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ACP1 MUTATED	4	0	1
ACP1 WILD-TYPE	122	96	66

'ACP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.25

Table S3287. Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ACP1 MUTATED	3	1	0	1
ACP1 WILD-TYPE	53	104	60	67

'ACP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0976 (Fisher's exact test), Q value = 0.2

Table S3288. Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ACP1 MUTATED	0	2	1	1	0	0
ACP1 WILD-TYPE	34	16	58	37	19	43

'ACP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 0.12

Table S3289. Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ACP1 MUTATED	1	0	3
ACP1 WILD-TYPE	121	51	35

Figure S1482. Get High-res Image Gene #330: 'ACP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ANKRD40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.56

Table S3290. Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ANKRD40 MUTATED	0	3	1	1	0
ANKRD40 WILD-TYPE	79	123	26	42	12

'ANKRD40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.63

Table S3291. Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ANKRD40 MUTATED	0	2	1	1
ANKRD40 WILD-TYPE	71	74	33	62

'ANKRD40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.57

Table S3292. Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ANKRD40 MUTATED	2	2	0
ANKRD40 WILD-TYPE	76	84	85

'ANKRD40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.52

Table S3293. Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ANKRD40 MUTATED	1	0	1	2
ANKRD40 WILD-TYPE	32	78	50	85

'ANKRD40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S3294. Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ANKRD40 MUTATED	4	1	0	0	0
ANKRD40 WILD-TYPE	61	58	42	34	57

'ANKRD40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.34

Table S3295. Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ANKRD40 MUTATED	1	0	1	1	0	0	2
ANKRD40 WILD-TYPE	35	21	47	55	39	37	18

'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.43

Table S3296. Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ANKRD40 MUTATED	4	1	0
ANKRD40 WILD-TYPE	122	95	67

'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.66

Table S3297. Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ANKRD40 MUTATED	1	3	1	0
ANKRD40 WILD-TYPE	55	102	59	68

'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.32

Table S3298. Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ANKRD40 MUTATED	0	1	0	2	0	1
ANKRD40 WILD-TYPE	34	17	59	36	19	42

'ANKRD40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.24

Table S3299. Gene #331: 'ANKRD40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ANKRD40 MUTATED	1	1	2
ANKRD40 WILD-TYPE	121	50	36

'RBM6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.1

Table S3300. Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RBM6 MUTATED	1	15	1	2	1
RBM6 WILD-TYPE	78	111	26	41	11

Figure S1483. Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RBM6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00292 (Fisher's exact test), Q value = 0.025

Table S3301. Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RBM6 MUTATED	1	9	2	0
RBM6 WILD-TYPE	70	67	32	63

Figure S1484. Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RBM6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.087

Table S3302. Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RBM6 MUTATED	11	3	4
RBM6 WILD-TYPE	67	83	81

Figure S1485. Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RBM6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00043 (Fisher's exact test), Q value = 0.0075

Table S3303. Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RBM6 MUTATED	5	1	9	3
RBM6 WILD-TYPE	28	77	42	84

Figure S1486. Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RBM6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0058

Table S3304. Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RBM6 MUTATED	11	1	1	4	0
RBM6 WILD-TYPE	54	58	41	30	57

Figure S1487. Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RBM6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00115 (Fisher's exact test), Q value = 0.014

Table S3305. Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RBM6 MUTATED	2	0	0	5	5	0	5
RBM6 WILD-TYPE	34	21	48	51	34	37	15

Figure S1488. Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.01

Table S3306. Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RBM6 MUTATED	17	2	1
RBM6 WILD-TYPE	109	94	66

Figure S1489. Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S3307. Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RBM6 MUTATED	13	5	1	1
RBM6 WILD-TYPE	43	100	59	67

Figure S1490. Get High-res Image Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 0.17

Table S3308. Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RBM6 MUTATED	1	3	5	2	0	0
RBM6 WILD-TYPE	33	15	54	36	19	43

'RBM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0571 (Fisher's exact test), Q value = 0.15

Table S3309. Gene #332: 'RBM6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RBM6 MUTATED	5	1	5
RBM6 WILD-TYPE	117	50	33

'SLC12A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.1

Table S3310. Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC12A7 MUTATED	2	14	1	0	0
SLC12A7 WILD-TYPE	77	112	26	43	12

Figure S1491. Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC12A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0027 (Fisher's exact test), Q value = 0.024

Table S3311. Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC12A7 MUTATED	2	12	1	1
SLC12A7 WILD-TYPE	69	64	33	62

Figure S1492. Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC12A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.15

Table S3312. Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC12A7 MUTATED	7	1	4
SLC12A7 WILD-TYPE	71	85	81

'SLC12A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0436 (Fisher's exact test), Q value = 0.12

Table S3313. Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC12A7 MUTATED	2	1	6	3
SLC12A7 WILD-TYPE	31	77	45	84

Figure S1493. Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC12A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.011

Table S3314. Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC12A7 MUTATED	12	1	1	1	1
SLC12A7 WILD-TYPE	53	58	41	33	56

Figure S1494. Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC12A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0664 (Fisher's exact test), Q value = 0.16

Table S3315. Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC12A7 MUTATED	3	0	0	5	4	1	3
SLC12A7 WILD-TYPE	33	21	48	51	35	36	17

'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00225 (Fisher's exact test), Q value = 0.021

Table S3316. Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC12A7 MUTATED	15	1	2
SLC12A7 WILD-TYPE	111	95	65

Figure S1495. Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00115 (Fisher's exact test), Q value = 0.014

Table S3317. Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC12A7 MUTATED	10	6	1	1
SLC12A7 WILD-TYPE	46	99	59	67

Figure S1496. Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.094

Table S3318. Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLC12A7 MUTATED	2	4	5	4	0	0
SLC12A7 WILD-TYPE	32	14	54	34	19	43

Figure S1497. Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0041

Table S3319. Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLC12A7 MUTATED	6	0	9
SLC12A7 WILD-TYPE	116	51	29

Figure S1498. Get High-res Image Gene #333: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ERBB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 0.82

Table S3320. Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ERBB2 MUTATED	3	9	1	1	0
ERBB2 WILD-TYPE	76	117	26	42	12

'ERBB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.53

Table S3321. Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ERBB2 MUTATED	1	5	2	3
ERBB2 WILD-TYPE	70	71	32	60

'ERBB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.39

Table S3322. Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ERBB2 MUTATED	6	2	3
ERBB2 WILD-TYPE	72	84	82

'ERBB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.66

Table S3323. Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ERBB2 MUTATED	3	3	2	3
ERBB2 WILD-TYPE	30	75	49	84

'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.37

Table S3324. Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ERBB2 MUTATED	6	2	1	3	1
ERBB2 WILD-TYPE	59	57	41	31	56

'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S3325. Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ERBB2 MUTATED	2	1	1	4	4	0	1
ERBB2 WILD-TYPE	34	20	47	52	35	37	19

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.22

Table S3326. Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ERBB2 MUTATED	10	2	2
ERBB2 WILD-TYPE	116	94	65

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S3327. Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ERBB2 MUTATED	6	5	2	1
ERBB2 WILD-TYPE	50	100	58	67

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.66

Table S3328. Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ERBB2 MUTATED	1	1	3	4	0	1
ERBB2 WILD-TYPE	33	17	56	34	19	42

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.55

Table S3329. Gene #334: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ERBB2 MUTATED	6	1	3
ERBB2 WILD-TYPE	116	50	35

'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00336 (Fisher's exact test), Q value = 0.027

Table S3330. Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CASP8 MUTATED	1	16	1	0	0
CASP8 WILD-TYPE	78	110	26	43	12

Figure S1499. Get High-res Image Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.18

Table S3331. Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CASP8 MUTATED	1	8	2	2
CASP8 WILD-TYPE	70	68	32	61

'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.087

Table S3332. Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CASP8 MUTATED	10	2	4
CASP8 WILD-TYPE	68	84	81

Figure S1500. Get High-res Image Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.11

Table S3333. Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CASP8 MUTATED	2	3	8	3
CASP8 WILD-TYPE	31	75	43	84

Figure S1501. Get High-res Image Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.085

Table S3334. Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CASP8 MUTATED	9	3	4	2	0
CASP8 WILD-TYPE	56	56	38	32	57

Figure S1502. Get High-res Image Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.38

Table S3335. Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CASP8 MUTATED	4	1	2	5	3	0	3
CASP8 WILD-TYPE	32	20	46	51	36	37	17

'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.27

Table S3336. Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CASP8 MUTATED	12	3	3
CASP8 WILD-TYPE	114	93	64

'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0492 (Fisher's exact test), Q value = 0.13

Table S3337. Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CASP8 MUTATED	8	6	1	3
CASP8 WILD-TYPE	48	99	59	65

Figure S1503. Get High-res Image Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0492 (Fisher's exact test), Q value = 0.13

Table S3338. Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CASP8 MUTATED	0	4	4	2	1	1
CASP8 WILD-TYPE	34	14	55	36	18	42

Figure S1504. Get High-res Image Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.34

Table S3339. Gene #335: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CASP8 MUTATED	7	1	4
CASP8 WILD-TYPE	115	50	34

'WHSC1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 0.18

Table S3340. Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WHSC1L1 MUTATED	1	12	1	1	1
WHSC1L1 WILD-TYPE	78	114	26	42	11

'WHSC1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.014

Table S3341. Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WHSC1L1 MUTATED	0	8	2	0
WHSC1L1 WILD-TYPE	71	68	32	63

Figure S1505. Get High-res Image Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.12

Table S3342. Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
WHSC1L1 MUTATED	7	1	7
WHSC1L1 WILD-TYPE	71	85	78

Figure S1506. Get High-res Image Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.007 (Fisher's exact test), Q value = 0.042

Table S3343. Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
WHSC1L1 MUTATED	3	2	8	2
WHSC1L1 WILD-TYPE	30	76	43	85

Figure S1507. Get High-res Image Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.065

Table S3344. Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
WHSC1L1 MUTATED	10	3	0	1	2
WHSC1L1 WILD-TYPE	55	56	42	33	55

Figure S1508. Get High-res Image Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 0.15

Table S3345. Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
WHSC1L1 MUTATED	3	1	1	3	2	1	5
WHSC1L1 WILD-TYPE	33	20	47	53	37	36	15

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00586 (Fisher's exact test), Q value = 0.037

Table S3346. Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
WHSC1L1 MUTATED	13	1	2
WHSC1L1 WILD-TYPE	113	95	65

Figure S1509. Get High-res Image Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00084 (Fisher's exact test), Q value = 0.012

Table S3347. Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
WHSC1L1 MUTATED	10	3	1	2
WHSC1L1 WILD-TYPE	46	102	59	66

Figure S1510. Get High-res Image Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.55

Table S3348. Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
WHSC1L1 MUTATED	2	1	4	1	0	0
WHSC1L1 WILD-TYPE	32	17	55	37	19	43

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S3349. Gene #336: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
WHSC1L1 MUTATED	5	0	3
WHSC1L1 WILD-TYPE	117	51	35

'TBL1XR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S3350. Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TBL1XR1 MUTATED	0	2	1	1	0
TBL1XR1 WILD-TYPE	79	124	26	42	12

'TBL1XR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S3351. Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TBL1XR1 MUTATED	0	2	1	0
TBL1XR1 WILD-TYPE	71	74	33	63

'TBL1XR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3352. Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TBL1XR1 MUTATED	1	1	1
TBL1XR1 WILD-TYPE	77	85	84

'TBL1XR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3353. Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TBL1XR1 MUTATED	0	1	1	1
TBL1XR1 WILD-TYPE	33	77	50	86

'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.78

Table S3354. Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TBL1XR1 MUTATED	2	1	1	1	0
TBL1XR1 WILD-TYPE	63	58	41	33	57

'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S3355. Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TBL1XR1 MUTATED	1	0	0	1	1	0	2
TBL1XR1 WILD-TYPE	35	21	48	55	38	37	18

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.15

Table S3356. Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TBL1XR1 MUTATED	5	0	0
TBL1XR1 WILD-TYPE	121	96	67

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.33

Table S3357. Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TBL1XR1 MUTATED	1	4	0	0
TBL1XR1 WILD-TYPE	55	101	60	68

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 0.92

Table S3358. Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TBL1XR1 MUTATED	1	0	1	1	0	0
TBL1XR1 WILD-TYPE	33	18	58	37	19	43

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.66

Table S3359. Gene #337: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TBL1XR1 MUTATED	2	0	1
TBL1XR1 WILD-TYPE	120	51	37

'NEK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.58

Table S3360. Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NEK7 MUTATED	0	4	0	0	0
NEK7 WILD-TYPE	79	122	27	43	12

'NEK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 0.9

Table S3361. Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NEK7 MUTATED	1	2	0	0
NEK7 WILD-TYPE	70	74	34	63

'NEK7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0768 (Fisher's exact test), Q value = 0.17

Table S3362. Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NEK7 MUTATED	3	0	1
NEK7 WILD-TYPE	75	86	84

'NEK7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.26

Table S3363. Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NEK7 MUTATED	1	1	2	0
NEK7 WILD-TYPE	32	77	49	87

'NEK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.072

Table S3364. Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NEK7 MUTATED	0	0	2	2	0
NEK7 WILD-TYPE	65	59	40	32	57

Figure S1511. Get High-res Image Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NEK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.51

Table S3365. Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NEK7 MUTATED	0	0	0	2	2	0	0
NEK7 WILD-TYPE	36	21	48	54	37	37	20

'NEK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S3366. Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NEK7 MUTATED	4	0	0
NEK7 WILD-TYPE	122	96	67

'NEK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.54

Table S3367. Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NEK7 MUTATED	2	1	0	1
NEK7 WILD-TYPE	54	104	60	67

'NEK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.46

Table S3368. Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NEK7 MUTATED	0	1	2	0	0	0
NEK7 WILD-TYPE	34	17	57	38	19	43

'NEK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00574 (Fisher's exact test), Q value = 0.037

Table S3369. Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NEK7 MUTATED	0	0	3
NEK7 WILD-TYPE	122	51	35

Figure S1512. Get High-res Image Gene #338: 'NEK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC148 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.56

Table S3370. Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC148 MUTATED	0	3	1	1	0
CCDC148 WILD-TYPE	79	123	26	42	12

'CCDC148 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S3371. Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CCDC148 MUTATED	0	4	0	1
CCDC148 WILD-TYPE	71	72	34	62

'CCDC148 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.76

Table S3372. Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CCDC148 MUTATED	2	1	1
CCDC148 WILD-TYPE	76	85	84

'CCDC148 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.7

Table S3373. Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CCDC148 MUTATED	0	1	2	1
CCDC148 WILD-TYPE	33	77	49	86

'CCDC148 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.78

Table S3374. Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CCDC148 MUTATED	2	0	1	0	1
CCDC148 WILD-TYPE	63	59	41	34	56

'CCDC148 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 0.96

Table S3375. Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CCDC148 MUTATED	0	0	1	2	1	0	0
CCDC148 WILD-TYPE	36	21	47	54	38	37	20

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.15

Table S3376. Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CCDC148 MUTATED	5	0	0
CCDC148 WILD-TYPE	121	96	67

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.4

Table S3377. Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CCDC148 MUTATED	2	3	0	0
CCDC148 WILD-TYPE	54	102	60	68

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.55

Table S3378. Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CCDC148 MUTATED	1	1	2	0	0	0
CCDC148 WILD-TYPE	33	17	57	38	19	43

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.24

Table S3379. Gene #339: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CCDC148 MUTATED	1	1	2
CCDC148 WILD-TYPE	121	50	36

'ANKRD23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.85

Table S3380. Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ANKRD23 MUTATED	1	4	0	0	0
ANKRD23 WILD-TYPE	78	122	27	43	12

'ANKRD23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.5

Table S3381. Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ANKRD23 MUTATED	1	3	0	0
ANKRD23 WILD-TYPE	70	73	34	63

'ANKRD23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.4

Table S3382. Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ANKRD23 MUTATED	2	3	0
ANKRD23 WILD-TYPE	76	83	85

'ANKRD23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 0.81

Table S3383. Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ANKRD23 MUTATED	0	1	2	2
ANKRD23 WILD-TYPE	33	77	49	85

'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 0.98

Table S3384. Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ANKRD23 MUTATED	1	1	0	1	1
ANKRD23 WILD-TYPE	64	58	42	33	56

'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.47

Table S3385. Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ANKRD23 MUTATED	1	0	0	0	1	1	1
ANKRD23 WILD-TYPE	35	21	48	56	38	36	19

'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3386. Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ANKRD23 MUTATED	2	2	1
ANKRD23 WILD-TYPE	124	94	66

'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 0.8

Table S3387. Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ANKRD23 MUTATED	1	1	2	1
ANKRD23 WILD-TYPE	55	104	58	67

'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.66

Table S3388. Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ANKRD23 MUTATED	2	0	1	1	0	0
ANKRD23 WILD-TYPE	32	18	58	37	19	43

'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 0.87

Table S3389. Gene #340: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ANKRD23 MUTATED	2	1	1
ANKRD23 WILD-TYPE	120	50	37

'BTBD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.3

Table S3390. Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BTBD11 MUTATED	3	14	1	1	1
BTBD11 WILD-TYPE	76	112	26	42	11

'BTBD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.0099

Table S3391. Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BTBD11 MUTATED	0	8	5	1
BTBD11 WILD-TYPE	71	68	29	62

Figure S1513. Get High-res Image Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BTBD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.33

Table S3392. Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BTBD11 MUTATED	8	3	6
BTBD11 WILD-TYPE	70	83	79

'BTBD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.27

Table S3393. Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BTBD11 MUTATED	5	5	4	3
BTBD11 WILD-TYPE	28	73	47	84

'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.063

Table S3394. Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BTBD11 MUTATED	11	1	2	3	2
BTBD11 WILD-TYPE	54	58	40	31	55

Figure S1514. Get High-res Image Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.65

Table S3395. Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BTBD11 MUTATED	3	0	2	5	4	2	3
BTBD11 WILD-TYPE	33	21	46	51	35	35	17

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00323 (Fisher's exact test), Q value = 0.027

Table S3396. Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BTBD11 MUTATED	16	2	2
BTBD11 WILD-TYPE	110	94	65

Figure S1515. Get High-res Image Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00126 (Fisher's exact test), Q value = 0.015

Table S3397. Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BTBD11 MUTATED	7	12	0	1
BTBD11 WILD-TYPE	49	93	60	67

Figure S1516. Get High-res Image Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.0079

Table S3398. Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BTBD11 MUTATED	0	6	4	3	1	0
BTBD11 WILD-TYPE	34	12	55	35	18	43

Figure S1517. Get High-res Image Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0418 (Fisher's exact test), Q value = 0.12

Table S3399. Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BTBD11 MUTATED	10	0	4
BTBD11 WILD-TYPE	112	51	34

Figure S1518. Get High-res Image Gene #341: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FBXO21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.09

Table S3400. Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FBXO21 MUTATED	0	10	0	1	1
FBXO21 WILD-TYPE	79	116	27	42	11

Figure S1519. Get High-res Image Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXO21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.27

Table S3401. Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FBXO21 MUTATED	0	4	0	2
FBXO21 WILD-TYPE	71	72	34	61

'FBXO21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.066

Table S3402. Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FBXO21 MUTATED	8	2	1
FBXO21 WILD-TYPE	70	84	84

Figure S1520. Get High-res Image Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FBXO21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0496 (Fisher's exact test), Q value = 0.13

Table S3403. Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FBXO21 MUTATED	1	1	6	3
FBXO21 WILD-TYPE	32	77	45	84

Figure S1521. Get High-res Image Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.071

Table S3404. Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FBXO21 MUTATED	7	3	0	1	0
FBXO21 WILD-TYPE	58	56	42	33	57

Figure S1522. Get High-res Image Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00093 (Fisher's exact test), Q value = 0.012

Table S3405. Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FBXO21 MUTATED	3	0	1	2	0	0	5
FBXO21 WILD-TYPE	33	21	47	54	39	37	15

Figure S1523. Get High-res Image Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 0.17

Table S3406. Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FBXO21 MUTATED	8	4	0
FBXO21 WILD-TYPE	118	92	67

'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0819 (Fisher's exact test), Q value = 0.18

Table S3407. Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FBXO21 MUTATED	6	3	2	1
FBXO21 WILD-TYPE	50	102	58	67

'FBXO21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.48

Table S3408. Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FBXO21 MUTATED	0	0	1	3	1	1
FBXO21 WILD-TYPE	34	18	58	35	18	42

'FBXO21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3409. Gene #342: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FBXO21 MUTATED	4	1	1
FBXO21 WILD-TYPE	118	50	37

'C19ORF26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.17

Table S3410. Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C19ORF26 MUTATED	0	6	0	0	1
C19ORF26 WILD-TYPE	79	120	27	43	11

'C19ORF26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.43

Table S3411. Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C19ORF26 MUTATED	0	3	0	2
C19ORF26 WILD-TYPE	71	73	34	61

'C19ORF26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.47

Table S3412. Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C19ORF26 MUTATED	2	1	4
C19ORF26 WILD-TYPE	76	85	81

'C19ORF26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.29

Table S3413. Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C19ORF26 MUTATED	0	1	4	2
C19ORF26 WILD-TYPE	33	77	47	85

'C19ORF26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.21

Table S3414. Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C19ORF26 MUTATED	4	1	0	2	0
C19ORF26 WILD-TYPE	61	58	42	32	57

'C19ORF26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.23

Table S3415. Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C19ORF26 MUTATED	2	0	0	1	2	0	2
C19ORF26 WILD-TYPE	34	21	48	55	37	37	18

'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.54

Table S3416. Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C19ORF26 MUTATED	5	1	1
C19ORF26 WILD-TYPE	121	95	66

'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S3417. Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C19ORF26 MUTATED	4	1	1	1
C19ORF26 WILD-TYPE	52	104	59	67

'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.17

Table S3418. Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C19ORF26 MUTATED	0	0	3	0	2	0
C19ORF26 WILD-TYPE	34	18	56	38	17	43

'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.57

Table S3419. Gene #343: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C19ORF26 MUTATED	4	0	1
C19ORF26 WILD-TYPE	118	51	37

'NAA25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.7

Table S3420. Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NAA25 MUTATED	3	8	0	2	1
NAA25 WILD-TYPE	76	118	27	41	11

'NAA25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.069

Table S3421. Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NAA25 MUTATED	3	9	2	0
NAA25 WILD-TYPE	68	67	32	63

Figure S1524. Get High-res Image Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NAA25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 0.97

Table S3422. Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NAA25 MUTATED	5	5	4
NAA25 WILD-TYPE	73	81	81

'NAA25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 0.78

Table S3423. Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NAA25 MUTATED	3	3	3	5
NAA25 WILD-TYPE	30	75	48	82

'NAA25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 0.98

Table S3424. Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NAA25 MUTATED	4	3	1	2	3
NAA25 WILD-TYPE	61	56	41	32	54

'NAA25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0251 (Fisher's exact test), Q value = 0.089

Table S3425. Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NAA25 MUTATED	4	0	1	1	1	2	4
NAA25 WILD-TYPE	32	21	47	55	38	35	16

Figure S1525. Get High-res Image Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NAA25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3426. Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NAA25 MUTATED	6	5	3
NAA25 WILD-TYPE	120	91	64

'NAA25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.866 (Fisher's exact test), Q value = 0.91

Table S3427. Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NAA25 MUTATED	3	6	3	2
NAA25 WILD-TYPE	53	99	57	66

'NAA25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 0.96

Table S3428. Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NAA25 MUTATED	1	1	4	2	0	3
NAA25 WILD-TYPE	33	17	55	36	19	40

'NAA25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3429. Gene #344: 'NAA25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NAA25 MUTATED	7	2	2
NAA25 WILD-TYPE	115	49	36

'MAMSTR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.57

Table S3430. Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAMSTR MUTATED	0	4	0	0	0
MAMSTR WILD-TYPE	79	122	27	43	12

'MAMSTR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.77

Table S3431. Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAMSTR MUTATED	1	1	1	0
MAMSTR WILD-TYPE	70	75	33	63

'MAMSTR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00921 (Fisher's exact test), Q value = 0.049

Table S3432. Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MAMSTR MUTATED	4	0	0
MAMSTR WILD-TYPE	74	86	85

Figure S1526. Get High-res Image Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MAMSTR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.073

Table S3433. Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MAMSTR MUTATED	1	0	3	0
MAMSTR WILD-TYPE	32	78	48	87

Figure S1527. Get High-res Image Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAMSTR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.48

Table S3434. Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MAMSTR MUTATED	2	0	1	0	0
MAMSTR WILD-TYPE	63	59	41	34	57

'MAMSTR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.12

Table S3435. Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MAMSTR MUTATED	0	0	0	1	0	0	2
MAMSTR WILD-TYPE	36	21	48	55	39	37	18

Figure S1528. Get High-res Image Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S3436. Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MAMSTR MUTATED	4	0	0
MAMSTR WILD-TYPE	122	96	67

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0626 (Fisher's exact test), Q value = 0.15

Table S3437. Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MAMSTR MUTATED	3	1	0	0
MAMSTR WILD-TYPE	53	104	60	68

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.45

Table S3438. Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MAMSTR MUTATED	0	1	2	0	0	0
MAMSTR WILD-TYPE	34	17	57	38	19	43

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S3439. Gene #345: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MAMSTR MUTATED	1	0	2
MAMSTR WILD-TYPE	121	51	36

'RING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.54

Table S3440. Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RING1 MUTATED	1	5	0	1	1
RING1 WILD-TYPE	78	121	27	42	11

'RING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.49

Table S3441. Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RING1 MUTATED	0	3	1	2
RING1 WILD-TYPE	71	73	33	61

'RING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 0.87

Table S3442. Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RING1 MUTATED	3	2	3
RING1 WILD-TYPE	75	84	82

'RING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S3443. Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RING1 MUTATED	3	2	2	1
RING1 WILD-TYPE	30	76	49	86

'RING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.15

Table S3444. Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RING1 MUTATED	5	2	0	0	0
RING1 WILD-TYPE	60	57	42	34	57

'RING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0064 (Fisher's exact test), Q value = 0.039

Table S3445. Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RING1 MUTATED	4	0	0	1	0	0	2
RING1 WILD-TYPE	32	21	48	55	39	37	18

Figure S1529. Get High-res Image Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.093

Table S3446. Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RING1 MUTATED	7	0	1
RING1 WILD-TYPE	119	96	66

Figure S1530. Get High-res Image Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S3447. Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RING1 MUTATED	4	3	0	1
RING1 WILD-TYPE	52	102	60	67

'RING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.15

Table S3448. Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RING1 MUTATED	0	0	5	0	0	0
RING1 WILD-TYPE	34	18	54	38	19	43

'RING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.35

Table S3449. Gene #346: 'RING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RING1 MUTATED	5	0	0
RING1 WILD-TYPE	117	51	38

'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S3450. Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATM MUTATED	4	20	1	4	1
ATM WILD-TYPE	75	106	26	39	11

'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00083 (Fisher's exact test), Q value = 0.012

Table S3451. Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATM MUTATED	1	16	3	6
ATM WILD-TYPE	70	60	31	57

Figure S1531. Get High-res Image Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.26

Table S3452. Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ATM MUTATED	13	8	6
ATM WILD-TYPE	65	78	79

'ATM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.64

Table S3453. Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ATM MUTATED	4	8	8	7
ATM WILD-TYPE	29	70	43	80

'ATM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00255 (Fisher's exact test), Q value = 0.023

Table S3454. Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ATM MUTATED	15	4	4	3	1
ATM WILD-TYPE	50	55	38	31	56

Figure S1532. Get High-res Image Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00617 (Fisher's exact test), Q value = 0.039

Table S3455. Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ATM MUTATED	6	1	2	7	5	0	6
ATM WILD-TYPE	30	20	46	49	34	37	14

Figure S1533. Get High-res Image Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.06

Table S3456. Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ATM MUTATED	20	8	2
ATM WILD-TYPE	106	88	65

Figure S1534. Get High-res Image Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00739 (Fisher's exact test), Q value = 0.043

Table S3457. Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ATM MUTATED	10	14	5	1
ATM WILD-TYPE	46	91	55	67

Figure S1535. Get High-res Image Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.51

Table S3458. Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ATM MUTATED	3	0	8	7	1	4
ATM WILD-TYPE	31	18	51	31	18	39

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.73

Table S3459. Gene #347: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ATM MUTATED	14	4	5
ATM WILD-TYPE	108	47	33

'BRWD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.15

Table S3460. Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BRWD1 MUTATED	3	14	2	0	1
BRWD1 WILD-TYPE	76	112	25	43	11

'BRWD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.52

Table S3461. Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BRWD1 MUTATED	4	9	2	3
BRWD1 WILD-TYPE	67	67	32	60

'BRWD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.74

Table S3462. Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BRWD1 MUTATED	6	5	8
BRWD1 WILD-TYPE	72	81	77

'BRWD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.28

Table S3463. Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BRWD1 MUTATED	2	7	7	3
BRWD1 WILD-TYPE	31	71	44	84

'BRWD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.13

Table S3464. Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BRWD1 MUTATED	9	1	1	4	4
BRWD1 WILD-TYPE	56	58	41	30	53

Figure S1536. Get High-res Image Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRWD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.45

Table S3465. Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BRWD1 MUTATED	2	0	2	3	5	4	3
BRWD1 WILD-TYPE	34	21	46	53	34	33	17

'BRWD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.1

Table S3466. Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BRWD1 MUTATED	15	3	3
BRWD1 WILD-TYPE	111	93	64

Figure S1537. Get High-res Image Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRWD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0638 (Fisher's exact test), Q value = 0.16

Table S3467. Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BRWD1 MUTATED	9	6	2	4
BRWD1 WILD-TYPE	47	99	58	64

'BRWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.25

Table S3468. Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BRWD1 MUTATED	5	3	6	1	2	1
BRWD1 WILD-TYPE	29	15	53	37	17	42

'BRWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 0.13

Table S3469. Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BRWD1 MUTATED	9	2	7
BRWD1 WILD-TYPE	113	49	31

Figure S1538. Get High-res Image Gene #348: 'BRWD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.29

Table S3470. Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PFKP MUTATED	1	10	0	2	0
PFKP WILD-TYPE	78	116	27	41	12

'PFKP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.18

Table S3471. Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PFKP MUTATED	1	5	2	0
PFKP WILD-TYPE	70	71	32	63

'PFKP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.014

Table S3472. Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PFKP MUTATED	8	0	2
PFKP WILD-TYPE	70	86	83

Figure S1539. Get High-res Image Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PFKP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 0.16

Table S3473. Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PFKP MUTATED	2	1	5	2
PFKP WILD-TYPE	31	77	46	85

'PFKP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.64

Table S3474. Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PFKP MUTATED	4	1	2	3	2
PFKP WILD-TYPE	61	58	40	31	55

'PFKP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 0.13

Table S3475. Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PFKP MUTATED	2	1	0	2	2	1	4
PFKP WILD-TYPE	34	20	48	54	37	36	16

Figure S1540. Get High-res Image Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.16

Table S3476. Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PFKP MUTATED	10	2	1
PFKP WILD-TYPE	116	94	66

'PFKP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.071

Table S3477. Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PFKP MUTATED	6	6	0	1
PFKP WILD-TYPE	50	99	60	67

Figure S1541. Get High-res Image Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S3478. Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PFKP MUTATED	1	1	1	3	0	0
PFKP WILD-TYPE	33	17	58	35	19	43

'PFKP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.55

Table S3479. Gene #349: 'PFKP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PFKP MUTATED	5	0	1
PFKP WILD-TYPE	117	51	37

'SAFB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.36

Table S3480. Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SAFB MUTATED	0	6	1	2	0
SAFB WILD-TYPE	79	120	26	41	12

'SAFB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.61

Table S3481. Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SAFB MUTATED	1	4	1	1
SAFB WILD-TYPE	70	72	33	62

'SAFB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.29

Table S3482. Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SAFB MUTATED	5	1	3
SAFB WILD-TYPE	73	85	82

'SAFB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.086

Table S3483. Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SAFB MUTATED	2	1	5	1
SAFB WILD-TYPE	31	77	46	86

Figure S1542. Get High-res Image Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SAFB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 0.19

Table S3484. Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SAFB MUTATED	3	4	0	0	0
SAFB WILD-TYPE	62	55	42	34	57

'SAFB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.073

Table S3485. Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SAFB MUTATED	2	0	1	0	0	1	3
SAFB WILD-TYPE	34	21	47	56	39	36	17

Figure S1543. Get High-res Image Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SAFB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.71

Table S3486. Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SAFB MUTATED	4	4	1
SAFB WILD-TYPE	122	92	66

'SAFB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0871 (Fisher's exact test), Q value = 0.19

Table S3487. Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SAFB MUTATED	4	1	3	1
SAFB WILD-TYPE	52	104	57	67

'SAFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.73

Table S3488. Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SAFB MUTATED	0	0	2	1	0	3
SAFB WILD-TYPE	34	18	57	37	19	40

'SAFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S3489. Gene #350: 'SAFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SAFB MUTATED	3	1	2
SAFB WILD-TYPE	119	50	36

'KCNH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.69

Table S3490. Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCNH4 MUTATED	1	4	1	0	0
KCNH4 WILD-TYPE	78	122	26	43	12

'KCNH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.35

Table S3491. Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCNH4 MUTATED	1	4	1	0
KCNH4 WILD-TYPE	70	72	33	63

'KCNH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S3492. Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KCNH4 MUTATED	3	1	0
KCNH4 WILD-TYPE	75	85	85

'KCNH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0177 (Fisher's exact test), Q value = 0.071

Table S3493. Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KCNH4 MUTATED	1	0	3	0
KCNH4 WILD-TYPE	32	78	48	87

Figure S1544. Get High-res Image Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 0.2

Table S3494. Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KCNH4 MUTATED	4	0	0	0	1
KCNH4 WILD-TYPE	61	59	42	34	56

'KCNH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0978 (Fisher's exact test), Q value = 0.2

Table S3495. Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KCNH4 MUTATED	0	0	0	1	3	0	1
KCNH4 WILD-TYPE	36	21	48	55	36	37	19

'KCNH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S3496. Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KCNH4 MUTATED	5	0	1
KCNH4 WILD-TYPE	121	96	66

'KCNH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.035 (Fisher's exact test), Q value = 0.11

Table S3497. Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KCNH4 MUTATED	4	1	0	1
KCNH4 WILD-TYPE	52	104	60	67

Figure S1545. Get High-res Image Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KCNH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S3498. Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KCNH4 MUTATED	2	1	1	1	0	0
KCNH4 WILD-TYPE	32	17	58	37	19	43

'KCNH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00479 (Fisher's exact test), Q value = 0.033

Table S3499. Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KCNH4 MUTATED	1	0	4
KCNH4 WILD-TYPE	121	51	34

Figure S1546. Get High-res Image Gene #351: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TMEM63A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 0.17

Table S3500. Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM63A MUTATED	0	7	2	1	1
TMEM63A WILD-TYPE	79	119	25	42	11

'TMEM63A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.11

Table S3501. Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TMEM63A MUTATED	0	4	3	1
TMEM63A WILD-TYPE	71	72	31	62

Figure S1547. Get High-res Image Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TMEM63A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 0.2

Table S3502. Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TMEM63A MUTATED	6	1	3
TMEM63A WILD-TYPE	72	85	82

'TMEM63A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.38

Table S3503. Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TMEM63A MUTATED	3	2	3	2
TMEM63A WILD-TYPE	30	76	48	85

'TMEM63A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.16

Table S3504. Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TMEM63A MUTATED	6	1	1	1	0
TMEM63A WILD-TYPE	59	58	41	33	57

'TMEM63A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00243 (Fisher's exact test), Q value = 0.022

Table S3505. Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TMEM63A MUTATED	2	0	0	3	0	0	4
TMEM63A WILD-TYPE	34	21	48	53	39	37	16

Figure S1548. Get High-res Image Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TMEM63A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.11

Table S3506. Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TMEM63A MUTATED	9	2	0
TMEM63A WILD-TYPE	117	94	67

Figure S1549. Get High-res Image Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TMEM63A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 0.17

Table S3507. Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TMEM63A MUTATED	4	6	1	0
TMEM63A WILD-TYPE	52	99	59	68

'TMEM63A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.38

Table S3508. Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TMEM63A MUTATED	0	0	3	4	0	1
TMEM63A WILD-TYPE	34	18	56	34	19	42

'TMEM63A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S3509. Gene #352: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TMEM63A MUTATED	6	1	1
TMEM63A WILD-TYPE	116	50	37

'SOAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.52

Table S3510. Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SOAT1 MUTATED	0	5	0	1	0
SOAT1 WILD-TYPE	79	121	27	42	12

'SOAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.15

Table S3511. Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SOAT1 MUTATED	0	4	1	0
SOAT1 WILD-TYPE	71	72	33	63

'SOAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0693 (Fisher's exact test), Q value = 0.16

Table S3512. Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SOAT1 MUTATED	4	0	2
SOAT1 WILD-TYPE	74	86	83

'SOAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.43

Table S3513. Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SOAT1 MUTATED	0	2	3	1
SOAT1 WILD-TYPE	33	76	48	86

'SOAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.25

Table S3514. Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SOAT1 MUTATED	2	0	1	2	0
SOAT1 WILD-TYPE	63	59	41	32	57

'SOAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.33

Table S3515. Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SOAT1 MUTATED	0	1	0	1	2	0	1
SOAT1 WILD-TYPE	36	20	48	55	37	37	19

'SOAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.29

Table S3516. Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SOAT1 MUTATED	5	1	0
SOAT1 WILD-TYPE	121	95	67

'SOAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S3517. Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SOAT1 MUTATED	2	4	0	0
SOAT1 WILD-TYPE	54	101	60	68

'SOAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.26

Table S3518. Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SOAT1 MUTATED	1	1	0	2	0	0
SOAT1 WILD-TYPE	33	17	59	36	19	43

'SOAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.71

Table S3519. Gene #353: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SOAT1 MUTATED	3	0	1
SOAT1 WILD-TYPE	119	51	37

'CTNNA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S3520. Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTNNA1 MUTATED	1	10	0	1	1
CTNNA1 WILD-TYPE	78	116	27	42	11

'CTNNA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 0.18

Table S3521. Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTNNA1 MUTATED	1	7	0	4
CTNNA1 WILD-TYPE	70	69	34	59

'CTNNA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.59

Table S3522. Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CTNNA1 MUTATED	6	3	4
CTNNA1 WILD-TYPE	72	83	81

'CTNNA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S3523. Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CTNNA1 MUTATED	2	3	5	3
CTNNA1 WILD-TYPE	31	75	46	84

'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.094

Table S3524. Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CTNNA1 MUTATED	8	2	0	1	1
CTNNA1 WILD-TYPE	57	57	42	33	56

Figure S1550. Get High-res Image Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.07

Table S3525. Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CTNNA1 MUTATED	3	0	2	0	2	1	4
CTNNA1 WILD-TYPE	33	21	46	56	37	36	16

Figure S1551. Get High-res Image Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.48

Table S3526. Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CTNNA1 MUTATED	7	2	4
CTNNA1 WILD-TYPE	119	94	63

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0714 (Fisher's exact test), Q value = 0.17

Table S3527. Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CTNNA1 MUTATED	6	5	1	1
CTNNA1 WILD-TYPE	50	100	59	67

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.66

Table S3528. Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CTNNA1 MUTATED	3	2	3	2	0	1
CTNNA1 WILD-TYPE	31	16	56	36	19	42

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S3529. Gene #354: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CTNNA1 MUTATED	7	1	3
CTNNA1 WILD-TYPE	115	50	35

'FAM55C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.3

Table S3530. Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM55C MUTATED	3	10	0	0	0
FAM55C WILD-TYPE	76	116	27	43	12

'FAM55C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S3531. Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM55C MUTATED	2	7	1	2
FAM55C WILD-TYPE	69	69	33	61

'FAM55C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.39

Table S3532. Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FAM55C MUTATED	6	2	3
FAM55C WILD-TYPE	72	84	82

'FAM55C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.64

Table S3533. Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FAM55C MUTATED	1	5	3	2
FAM55C WILD-TYPE	32	73	48	85

'FAM55C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.22

Table S3534. Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FAM55C MUTATED	6	0	1	1	2
FAM55C WILD-TYPE	59	59	41	33	55

'FAM55C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.48

Table S3535. Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FAM55C MUTATED	2	0	0	3	1	2	2
FAM55C WILD-TYPE	34	21	48	53	38	35	18

'FAM55C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.3

Table S3536. Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FAM55C MUTATED	9	2	2
FAM55C WILD-TYPE	117	94	65

'FAM55C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.58

Table S3537. Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FAM55C MUTATED	3	7	1	2
FAM55C WILD-TYPE	53	98	59	66

'FAM55C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.59

Table S3538. Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FAM55C MUTATED	2	1	4	3	1	0
FAM55C WILD-TYPE	32	17	55	35	18	43

'FAM55C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.5

Table S3539. Gene #355: 'FAM55C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FAM55C MUTATED	9	1	1
FAM55C WILD-TYPE	113	50	37

'SLC25A17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S3540. Gene #356: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC25A17 MUTATED	0	2	1	0	1
SLC25A17 WILD-TYPE	79	124	26	43	11

'SLC25A17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.18

Table S3541. Gene #356: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC25A17 MUTATED	3	0	1
SLC25A17 WILD-TYPE	75	86	84

'SLC25A17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 0.94

Table S3542. Gene #356: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC25A17 MUTATED	0	2	1	1
SLC25A17 WILD-TYPE	33	76	50	86

'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.47

Table S3543. Gene #356: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC25A17 MUTATED	2	0	1	1	0
SLC25A17 WILD-TYPE	63	59	41	33	57

'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.54

Table S3544. Gene #356: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC25A17 MUTATED	0	0	0	2	1	0	1
SLC25A17 WILD-TYPE	36	21	48	54	38	37	19

'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.66

Table S3545. Gene #356: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC25A17 MUTATED	3	1	0
SLC25A17 WILD-TYPE	123	95	67

'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.54

Table S3546. Gene #356: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC25A17 MUTATED	2	1	0	1
SLC25A17 WILD-TYPE	54	104	60	67

'ZNF626 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.51

Table S3547. Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF626 MUTATED	2	9	2	1	1
ZNF626 WILD-TYPE	77	117	25	42	11

'ZNF626 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.27

Table S3548. Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF626 MUTATED	3	5	4	1
ZNF626 WILD-TYPE	68	71	30	62

'ZNF626 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 0.2

Table S3549. Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZNF626 MUTATED	6	6	1
ZNF626 WILD-TYPE	72	80	84

'ZNF626 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.092

Table S3550. Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZNF626 MUTATED	3	0	4	6
ZNF626 WILD-TYPE	30	78	47	81

Figure S1552. Get High-res Image Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF626 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.71

Table S3551. Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF626 MUTATED	6	3	1	2	2
ZNF626 WILD-TYPE	59	56	41	32	55

'ZNF626 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S3552. Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF626 MUTATED	3	1	3	3	1	2	1
ZNF626 WILD-TYPE	33	20	45	53	38	35	19

'ZNF626 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3553. Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF626 MUTATED	7	5	3
ZNF626 WILD-TYPE	119	91	64

'ZNF626 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S3554. Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF626 MUTATED	4	6	3	2
ZNF626 WILD-TYPE	52	99	57	66

'ZNF626 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.73

Table S3555. Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZNF626 MUTATED	2	1	5	1	0	1
ZNF626 WILD-TYPE	32	17	54	37	19	42

'ZNF626 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.28

Table S3556. Gene #357: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZNF626 MUTATED	8	0	2
ZNF626 WILD-TYPE	114	51	36

'OPLAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.14

Table S3557. Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OPLAH MUTATED	0	10	2	2	0
OPLAH WILD-TYPE	79	116	25	41	12

'OPLAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0753 (Fisher's exact test), Q value = 0.17

Table S3558. Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OPLAH MUTATED	1	7	2	1
OPLAH WILD-TYPE	70	69	32	62

'OPLAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 0.2

Table S3559. Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OPLAH MUTATED	6	1	6
OPLAH WILD-TYPE	72	85	79

'OPLAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.0061

Table S3560. Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OPLAH MUTATED	0	3	9	1
OPLAH WILD-TYPE	33	75	42	86

Figure S1553. Get High-res Image Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OPLAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.087

Table S3561. Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OPLAH MUTATED	7	1	0	3	1
OPLAH WILD-TYPE	58	58	42	31	56

Figure S1554. Get High-res Image Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OPLAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.005

Table S3562. Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OPLAH MUTATED	1	0	0	0	4	2	5
OPLAH WILD-TYPE	35	21	48	56	35	35	15

Figure S1555. Get High-res Image Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OPLAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.094

Table S3563. Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OPLAH MUTATED	11	2	1
OPLAH WILD-TYPE	115	94	66

Figure S1556. Get High-res Image Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OPLAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S3564. Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OPLAH MUTATED	6	5	2	1
OPLAH WILD-TYPE	50	100	58	67

'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S3565. Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OPLAH MUTATED	3	2	2	2	0	2
OPLAH WILD-TYPE	31	16	57	36	19	41

'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.44

Table S3566. Gene #358: 'OPLAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OPLAH MUTATED	5	2	4
OPLAH WILD-TYPE	117	49	34

'MYOCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0023 (Fisher's exact test), Q value = 0.022

Table S3567. Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MYOCD MUTATED	0	13	0	0	0
MYOCD WILD-TYPE	79	113	27	43	12

Figure S1557. Get High-res Image Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MYOCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S3568. Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MYOCD MUTATED	1	6	3	2
MYOCD WILD-TYPE	70	70	31	61

'MYOCD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 0.14

Table S3569. Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MYOCD MUTATED	7	1	5
MYOCD WILD-TYPE	71	85	80

'MYOCD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 0.92

Table S3570. Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MYOCD MUTATED	2	3	3	5
MYOCD WILD-TYPE	31	75	48	82

'MYOCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S3571. Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MYOCD MUTATED	5	2	2	3	0
MYOCD WILD-TYPE	60	57	40	31	57

'MYOCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.64

Table S3572. Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MYOCD MUTATED	3	2	2	2	2	0	1
MYOCD WILD-TYPE	33	19	46	54	37	37	19

'MYOCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.57

Table S3573. Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MYOCD MUTATED	7	5	1
MYOCD WILD-TYPE	119	91	66

'MYOCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.54

Table S3574. Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MYOCD MUTATED	4	6	1	2
MYOCD WILD-TYPE	52	99	59	66

'MYOCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 0.2

Table S3575. Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MYOCD MUTATED	1	3	4	2	0	0
MYOCD WILD-TYPE	33	15	55	36	19	43

'MYOCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 0.14

Table S3576. Gene #359: 'MYOCD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MYOCD MUTATED	6	0	4
MYOCD WILD-TYPE	116	51	34

'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 0.94

Table S3577. Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NRAS MUTATED	1	3	0	0	0
NRAS WILD-TYPE	78	123	27	43	12

'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S3578. Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NRAS MUTATED	0	1	1	2
NRAS WILD-TYPE	71	75	33	61

'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 0.89

Table S3579. Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NRAS MUTATED	1	1	2
NRAS WILD-TYPE	77	85	83

'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 0.94

Table S3580. Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NRAS MUTATED	0	2	1	1
NRAS WILD-TYPE	33	76	50	86

'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.64

Table S3581. Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NRAS MUTATED	1	2	0	0	0
NRAS WILD-TYPE	64	57	42	34	57

'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.72

Table S3582. Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NRAS MUTATED	0	1	1	1	0	0	0
NRAS WILD-TYPE	36	20	47	55	39	37	20

'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.65

Table S3583. Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NRAS MUTATED	3	1	0
NRAS WILD-TYPE	123	95	67

'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 0.82

Table S3584. Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NRAS MUTATED	1	2	1	0
NRAS WILD-TYPE	55	103	59	68

'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3585. Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NRAS MUTATED	0	0	1	1	0	1
NRAS WILD-TYPE	34	18	58	37	19	42

'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.5

Table S3586. Gene #360: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NRAS MUTATED	1	1	1
NRAS WILD-TYPE	121	50	37

'SEC24C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.24

Table S3587. Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SEC24C MUTATED	1	4	1	1	2
SEC24C WILD-TYPE	78	122	26	42	10

'SEC24C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.12

Table S3588. Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SEC24C MUTATED	1	7	0	1
SEC24C WILD-TYPE	70	69	34	62

Figure S1558. Get High-res Image Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SEC24C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.29

Table S3589. Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SEC24C MUTATED	3	0	3
SEC24C WILD-TYPE	75	86	82

'SEC24C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0616 (Fisher's exact test), Q value = 0.15

Table S3590. Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SEC24C MUTATED	0	3	3	0
SEC24C WILD-TYPE	33	75	48	87

'SEC24C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.39

Table S3591. Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SEC24C MUTATED	4	0	2	1	1
SEC24C WILD-TYPE	61	59	40	33	56

'SEC24C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0281 (Fisher's exact test), Q value = 0.094

Table S3592. Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SEC24C MUTATED	0	0	0	4	4	0	0
SEC24C WILD-TYPE	36	21	48	52	35	37	20

Figure S1559. Get High-res Image Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SEC24C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.054

Table S3593. Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SEC24C MUTATED	9	1	0
SEC24C WILD-TYPE	117	95	67

Figure S1560. Get High-res Image Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SEC24C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.054

Table S3594. Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SEC24C MUTATED	6	3	1	0
SEC24C WILD-TYPE	50	102	59	68

Figure S1561. Get High-res Image Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SEC24C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.36

Table S3595. Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SEC24C MUTATED	1	1	4	0	0	0
SEC24C WILD-TYPE	33	17	55	38	19	43

'SEC24C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S3596. Gene #361: 'SEC24C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SEC24C MUTATED	2	1	3
SEC24C WILD-TYPE	120	50	35

'CEP57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 0.18

Table S3597. Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CEP57 MUTATED	0	6	0	0	1
CEP57 WILD-TYPE	79	120	27	43	11

'CEP57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.47

Table S3598. Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CEP57 MUTATED	0	3	1	1
CEP57 WILD-TYPE	71	73	33	62

'CEP57 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S3599. Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CEP57 MUTATED	5	1	1
CEP57 WILD-TYPE	73	85	84

'CEP57 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.052

Table S3600. Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CEP57 MUTATED	3	1	3	0
CEP57 WILD-TYPE	30	77	48	87

Figure S1562. Get High-res Image Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CEP57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.091

Table S3601. Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CEP57 MUTATED	4	0	0	2	0
CEP57 WILD-TYPE	61	59	42	32	57

Figure S1563. Get High-res Image Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CEP57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00368 (Fisher's exact test), Q value = 0.029

Table S3602. Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CEP57 MUTATED	1	0	0	0	2	0	3
CEP57 WILD-TYPE	35	21	48	56	37	37	17

Figure S1564. Get High-res Image Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CEP57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.13

Table S3603. Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CEP57 MUTATED	6	0	1
CEP57 WILD-TYPE	120	96	66

Figure S1565. Get High-res Image Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CEP57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0355 (Fisher's exact test), Q value = 0.11

Table S3604. Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CEP57 MUTATED	4	3	0	0
CEP57 WILD-TYPE	52	102	60	68

Figure S1566. Get High-res Image Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.65

Table S3605. Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CEP57 MUTATED	0	0	3	1	0	0
CEP57 WILD-TYPE	34	18	56	37	19	43

'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.71

Table S3606. Gene #362: 'CEP57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CEP57 MUTATED	3	0	1
CEP57 WILD-TYPE	119	51	37

'TMEM55A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.71

Table S3607. Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM55A MUTATED	0	2	0	1	0
TMEM55A WILD-TYPE	79	124	27	42	12

'TMEM55A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.33

Table S3608. Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TMEM55A MUTATED	2	0	1
TMEM55A WILD-TYPE	76	86	84

'TMEM55A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S3609. Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TMEM55A MUTATED	0	1	2	0
TMEM55A WILD-TYPE	33	77	49	87

'TMEM55A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.74

Table S3610. Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TMEM55A MUTATED	2	1	0	0	0
TMEM55A WILD-TYPE	63	58	42	34	57

'TMEM55A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00591 (Fisher's exact test), Q value = 0.038

Table S3611. Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TMEM55A MUTATED	1	0	0	0	0	0	2
TMEM55A WILD-TYPE	35	21	48	56	39	37	18

Figure S1567. Get High-res Image Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TMEM55A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.85

Table S3612. Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TMEM55A MUTATED	2	1	0
TMEM55A WILD-TYPE	124	95	67

'TMEM55A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 0.14

Table S3613. Gene #363: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TMEM55A MUTATED	2	0	1	0
TMEM55A WILD-TYPE	54	105	59	68

'CASD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.15

Table S3614. Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CASD1 MUTATED	1	7	1	0	2
CASD1 WILD-TYPE	78	119	26	43	10

'CASD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00117 (Fisher's exact test), Q value = 0.014

Table S3615. Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CASD1 MUTATED	0	7	0	0
CASD1 WILD-TYPE	71	69	34	63

Figure S1568. Get High-res Image Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CASD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.51

Table S3616. Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CASD1 MUTATED	5	2	3
CASD1 WILD-TYPE	73	84	82

'CASD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.16

Table S3617. Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CASD1 MUTATED	3	2	4	1
CASD1 WILD-TYPE	30	76	47	86

'CASD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00222 (Fisher's exact test), Q value = 0.021

Table S3618. Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CASD1 MUTATED	8	0	0	1	1
CASD1 WILD-TYPE	57	59	42	33	56

Figure S1569. Get High-res Image Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CASD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.24

Table S3619. Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CASD1 MUTATED	2	0	0	3	3	0	2
CASD1 WILD-TYPE	34	21	48	53	36	37	18

'CASD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.074

Table S3620. Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CASD1 MUTATED	8	0	3
CASD1 WILD-TYPE	118	96	64

Figure S1570. Get High-res Image Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CASD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00041 (Fisher's exact test), Q value = 0.0073

Table S3621. Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CASD1 MUTATED	8	2	0	1
CASD1 WILD-TYPE	48	103	60	67

Figure S1571. Get High-res Image Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.26

Table S3622. Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CASD1 MUTATED	0	2	3	1	0	0
CASD1 WILD-TYPE	34	16	56	37	19	43

'CASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.071

Table S3623. Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CASD1 MUTATED	2	0	4
CASD1 WILD-TYPE	120	51	34

Figure S1572. Get High-res Image Gene #364: 'CASD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CADPS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 0.84

Table S3624. Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CADPS2 MUTATED	2	5	2	1	0
CADPS2 WILD-TYPE	77	121	25	42	12

'CADPS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.18

Table S3625. Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CADPS2 MUTATED	2	6	2	0
CADPS2 WILD-TYPE	69	70	32	63

'CADPS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.014

Table S3626. Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CADPS2 MUTATED	7	0	1
CADPS2 WILD-TYPE	71	86	84

Figure S1573. Get High-res Image Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CADPS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00415 (Fisher's exact test), Q value = 0.03

Table S3627. Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CADPS2 MUTATED	2	1	5	0
CADPS2 WILD-TYPE	31	77	46	87

Figure S1574. Get High-res Image Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CADPS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0608 (Fisher's exact test), Q value = 0.15

Table S3628. Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CADPS2 MUTATED	6	0	1	1	1
CADPS2 WILD-TYPE	59	59	41	33	56

'CADPS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00559 (Fisher's exact test), Q value = 0.036

Table S3629. Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CADPS2 MUTATED	0	0	0	2	4	0	3
CADPS2 WILD-TYPE	36	21	48	54	35	37	17

Figure S1575. Get High-res Image Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CADPS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.24

Table S3630. Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CADPS2 MUTATED	8	1	2
CADPS2 WILD-TYPE	118	95	65

'CADPS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00453 (Fisher's exact test), Q value = 0.032

Table S3631. Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CADPS2 MUTATED	7	1	1	2
CADPS2 WILD-TYPE	49	104	59	66

Figure S1576. Get High-res Image Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CADPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.67

Table S3632. Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CADPS2 MUTATED	3	1	2	3	0	1
CADPS2 WILD-TYPE	31	17	57	35	19	42

'CADPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00694 (Fisher's exact test), Q value = 0.041

Table S3633. Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CADPS2 MUTATED	3	1	6
CADPS2 WILD-TYPE	119	50	32

Figure S1577. Get High-res Image Gene #365: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MASTL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.18

Table S3634. Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MASTL MUTATED	0	8	2	1	0
MASTL WILD-TYPE	79	118	25	42	12

'MASTL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.13

Table S3635. Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MASTL MUTATED	0	5	3	2
MASTL WILD-TYPE	71	71	31	61

Figure S1578. Get High-res Image Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MASTL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.54

Table S3636. Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MASTL MUTATED	5	2	4
MASTL WILD-TYPE	73	84	81

'MASTL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S3637. Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MASTL MUTATED	1	1	5	4
MASTL WILD-TYPE	32	77	46	83

'MASTL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.003 (Fisher's exact test), Q value = 0.026

Table S3638. Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MASTL MUTATED	8	1	1	0	0
MASTL WILD-TYPE	57	58	41	34	57

Figure S1579. Get High-res Image Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MASTL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S3639. Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MASTL MUTATED	4	1	0	2	2	0	1
MASTL WILD-TYPE	32	20	48	54	37	37	19

'MASTL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S3640. Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MASTL MUTATED	9	2	0
MASTL WILD-TYPE	117	94	67

Figure S1580. Get High-res Image Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MASTL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S3641. Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MASTL MUTATED	5	4	1	1
MASTL WILD-TYPE	51	101	59	67

'MASTL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.33

Table S3642. Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MASTL MUTATED	1	1	6	1	1	0
MASTL WILD-TYPE	33	17	53	37	18	43

'MASTL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.59

Table S3643. Gene #366: 'MASTL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MASTL MUTATED	8	1	1
MASTL WILD-TYPE	114	50	37

'MRI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S3644. Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MRI1 MUTATED	0	3	0	1	0
MRI1 WILD-TYPE	79	123	27	42	12

'MRI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.4

Table S3645. Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MRI1 MUTATED	0	3	0	1
MRI1 WILD-TYPE	71	73	34	62

'MRI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.53

Table S3646. Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MRI1 MUTATED	1	0	2
MRI1 WILD-TYPE	77	86	83

'MRI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.3

Table S3647. Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MRI1 MUTATED	0	1	2	0
MRI1 WILD-TYPE	33	77	49	87

'MRI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.42

Table S3648. Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MRI1 MUTATED	3	0	0	0	1
MRI1 WILD-TYPE	62	59	42	34	56

'MRI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.25

Table S3649. Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MRI1 MUTATED	1	0	0	0	2	0	1
MRI1 WILD-TYPE	35	21	48	56	37	37	19

'MRI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S3650. Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MRI1 MUTATED	4	0	0
MRI1 WILD-TYPE	122	96	67

'MRI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.062 (Fisher's exact test), Q value = 0.15

Table S3651. Gene #367: 'MRI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MRI1 MUTATED	3	1	0	0
MRI1 WILD-TYPE	53	104	60	68

'KBTBD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00877 (Fisher's exact test), Q value = 0.048

Table S3652. Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KBTBD6 MUTATED	0	10	3	0	0
KBTBD6 WILD-TYPE	79	116	24	43	12

Figure S1581. Get High-res Image Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KBTBD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.4

Table S3653. Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KBTBD6 MUTATED	0	3	1	3
KBTBD6 WILD-TYPE	71	73	33	60

'KBTBD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 0.17

Table S3654. Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KBTBD6 MUTATED	7	2	2
KBTBD6 WILD-TYPE	71	84	83

'KBTBD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00879 (Fisher's exact test), Q value = 0.048

Table S3655. Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KBTBD6 MUTATED	1	1	7	2
KBTBD6 WILD-TYPE	32	77	44	85

Figure S1582. Get High-res Image Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KBTBD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 0.17

Table S3656. Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KBTBD6 MUTATED	7	2	0	1	1
KBTBD6 WILD-TYPE	58	57	42	33	56

'KBTBD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00517 (Fisher's exact test), Q value = 0.035

Table S3657. Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KBTBD6 MUTATED	2	1	1	0	3	0	4
KBTBD6 WILD-TYPE	34	20	47	56	36	37	16

Figure S1583. Get High-res Image Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KBTBD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.16

Table S3658. Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KBTBD6 MUTATED	10	2	1
KBTBD6 WILD-TYPE	116	94	66

'KBTBD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S3659. Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KBTBD6 MUTATED	6	4	2	1
KBTBD6 WILD-TYPE	50	101	58	67

'KBTBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 0.97

Table S3660. Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KBTBD6 MUTATED	1	1	2	1	0	1
KBTBD6 WILD-TYPE	33	17	57	37	19	42

'KBTBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S3661. Gene #368: 'KBTBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KBTBD6 MUTATED	2	1	3
KBTBD6 WILD-TYPE	120	50	35

'PLA2G15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.39

Table S3662. Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLA2G15 MUTATED	1	6	2	0	0
PLA2G15 WILD-TYPE	78	120	25	43	12

'PLA2G15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.61

Table S3663. Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLA2G15 MUTATED	1	4	1	1
PLA2G15 WILD-TYPE	70	72	33	62

'PLA2G15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.12

Table S3664. Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PLA2G15 MUTATED	5	0	3
PLA2G15 WILD-TYPE	73	86	82

Figure S1584. Get High-res Image Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PLA2G15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 0.056

Table S3665. Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PLA2G15 MUTATED	1	2	5	0
PLA2G15 WILD-TYPE	32	76	46	87

Figure S1585. Get High-res Image Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.54

Table S3666. Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PLA2G15 MUTATED	3	0	2	1	1
PLA2G15 WILD-TYPE	62	59	40	33	56

'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0547 (Fisher's exact test), Q value = 0.14

Table S3667. Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PLA2G15 MUTATED	0	0	0	4	1	0	2
PLA2G15 WILD-TYPE	36	21	48	52	38	37	18

'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.26

Table S3668. Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PLA2G15 MUTATED	7	1	1
PLA2G15 WILD-TYPE	119	95	66

'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.49

Table S3669. Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PLA2G15 MUTATED	4	3	1	1
PLA2G15 WILD-TYPE	52	102	59	67

'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S3670. Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PLA2G15 MUTATED	1	0	3	1	0	1
PLA2G15 WILD-TYPE	33	18	56	37	19	42

'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.71

Table S3671. Gene #369: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PLA2G15 MUTATED	3	1	2
PLA2G15 WILD-TYPE	119	50	36

'JHDM1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.27

Table S3672. Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
JHDM1D MUTATED	1	6	2	0	1
JHDM1D WILD-TYPE	78	120	25	43	11

'JHDM1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00753 (Fisher's exact test), Q value = 0.044

Table S3673. Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
JHDM1D MUTATED	1	7	0	0
JHDM1D WILD-TYPE	70	69	34	63

Figure S1586. Get High-res Image Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'JHDM1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 0.15

Table S3674. Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
JHDM1D MUTATED	4	0	5
JHDM1D WILD-TYPE	74	86	80

'JHDM1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.34

Table S3675. Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
JHDM1D MUTATED	1	3	4	1
JHDM1D WILD-TYPE	32	75	47	86

'JHDM1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.35

Table S3676. Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
JHDM1D MUTATED	6	1	1	1	1
JHDM1D WILD-TYPE	59	58	41	33	56

'JHDM1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.48

Table S3677. Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
JHDM1D MUTATED	0	0	1	3	3	1	2
JHDM1D WILD-TYPE	36	21	47	53	36	36	18

'JHDM1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.071

Table S3678. Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
JHDM1D MUTATED	8	0	2
JHDM1D WILD-TYPE	118	96	65

Figure S1587. Get High-res Image Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'JHDM1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00102 (Fisher's exact test), Q value = 0.013

Table S3679. Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
JHDM1D MUTATED	7	1	0	2
JHDM1D WILD-TYPE	49	104	60	66

Figure S1588. Get High-res Image Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'JHDM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S3680. Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
JHDM1D MUTATED	2	2	3	1	0	0
JHDM1D WILD-TYPE	32	16	56	37	19	43

'JHDM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S3681. Gene #370: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
JHDM1D MUTATED	5	0	3
JHDM1D WILD-TYPE	117	51	35

'NUFIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.15

Table S3682. Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NUFIP2 MUTATED	0	4	2	0	1
NUFIP2 WILD-TYPE	79	122	25	43	11

'NUFIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.34

Table S3683. Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NUFIP2 MUTATED	1	3	2	0
NUFIP2 WILD-TYPE	70	73	32	63

'NUFIP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.19

Table S3684. Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NUFIP2 MUTATED	4	0	3
NUFIP2 WILD-TYPE	74	86	82

'NUFIP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.37

Table S3685. Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NUFIP2 MUTATED	0	3	3	1
NUFIP2 WILD-TYPE	33	75	48	86

'NUFIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.66

Table S3686. Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NUFIP2 MUTATED	3	1	1	1	0
NUFIP2 WILD-TYPE	62	58	41	33	57

'NUFIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 0.74

Table S3687. Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NUFIP2 MUTATED	0	1	1	2	1	0	1
NUFIP2 WILD-TYPE	36	20	47	54	38	37	19

'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 0.85

Table S3688. Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NUFIP2 MUTATED	4	2	1
NUFIP2 WILD-TYPE	122	94	66

'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 0.85

Table S3689. Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NUFIP2 MUTATED	1	4	1	1
NUFIP2 WILD-TYPE	55	101	59	67

'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.77

Table S3690. Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NUFIP2 MUTATED	0	1	2	2	0	1
NUFIP2 WILD-TYPE	34	17	57	36	19	42

'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 0.63

Table S3691. Gene #371: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NUFIP2 MUTATED	5	1	0
NUFIP2 WILD-TYPE	117	50	38

'KCNJ10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.089

Table S3692. Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCNJ10 MUTATED	0	10	1	0	0
KCNJ10 WILD-TYPE	79	116	26	43	12

Figure S1589. Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNJ10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0029 (Fisher's exact test), Q value = 0.025

Table S3693. Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCNJ10 MUTATED	0	7	1	0
KCNJ10 WILD-TYPE	71	69	33	63

Figure S1590. Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNJ10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0038

Table S3694. Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KCNJ10 MUTATED	9	0	1
KCNJ10 WILD-TYPE	69	86	84

Figure S1591. Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KCNJ10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S3695. Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KCNJ10 MUTATED	2	0	8	0
KCNJ10 WILD-TYPE	31	78	43	87

Figure S1592. Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00166 (Fisher's exact test), Q value = 0.018

Table S3696. Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KCNJ10 MUTATED	6	0	0	3	0
KCNJ10 WILD-TYPE	59	59	42	31	57

Figure S1593. Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KCNJ10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00834 (Fisher's exact test), Q value = 0.047

Table S3697. Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KCNJ10 MUTATED	1	0	0	1	4	0	3
KCNJ10 WILD-TYPE	35	21	48	55	35	37	17

Figure S1594. Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00396 (Fisher's exact test), Q value = 0.03

Table S3698. Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KCNJ10 MUTATED	10	0	1
KCNJ10 WILD-TYPE	116	96	66

Figure S1595. Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S3699. Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KCNJ10 MUTATED	10	1	0	0
KCNJ10 WILD-TYPE	46	104	60	68

Figure S1596. Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.58

Table S3700. Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KCNJ10 MUTATED	1	1	4	2	0	0
KCNJ10 WILD-TYPE	33	17	55	36	19	43

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00646 (Fisher's exact test), Q value = 0.039

Table S3701. Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KCNJ10 MUTATED	3	0	5
KCNJ10 WILD-TYPE	119	51	33

Figure S1597. Get High-res Image Gene #372: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRUB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.33

Table S3702. Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRUB1 MUTATED	1	8	0	0	0
TRUB1 WILD-TYPE	78	118	27	43	12

'TRUB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.1

Table S3703. Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRUB1 MUTATED	0	6	0	2
TRUB1 WILD-TYPE	71	70	34	61

Figure S1598. Get High-res Image Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRUB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00947 (Fisher's exact test), Q value = 0.05

Table S3704. Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TRUB1 MUTATED	6	0	2
TRUB1 WILD-TYPE	72	86	83

Figure S1599. Get High-res Image Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TRUB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.18

Table S3705. Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TRUB1 MUTATED	2	1	4	1
TRUB1 WILD-TYPE	31	77	47	86

'TRUB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00754 (Fisher's exact test), Q value = 0.044

Table S3706. Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TRUB1 MUTATED	7	0	0	1	1
TRUB1 WILD-TYPE	58	59	42	33	56

Figure S1600. Get High-res Image Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TRUB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.39

Table S3707. Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TRUB1 MUTATED	1	0	0	2	3	1	2
TRUB1 WILD-TYPE	35	21	48	54	36	36	18

'TRUB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.26

Table S3708. Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TRUB1 MUTATED	7	1	1
TRUB1 WILD-TYPE	119	95	66

'TRUB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S3709. Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TRUB1 MUTATED	4	4	0	1
TRUB1 WILD-TYPE	52	101	60	67

'TRUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.33

Table S3710. Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TRUB1 MUTATED	1	0	3	4	0	0
TRUB1 WILD-TYPE	33	18	56	34	19	43

'TRUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.23

Table S3711. Gene #373: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TRUB1 MUTATED	5	0	3
TRUB1 WILD-TYPE	117	51	35

'AGBL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.65

Table S3712. Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AGBL5 MUTATED	1	7	1	2	0
AGBL5 WILD-TYPE	78	119	26	41	12

'AGBL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.16

Table S3713. Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AGBL5 MUTATED	0	6	1	4
AGBL5 WILD-TYPE	71	70	33	59

'AGBL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.15

Table S3714. Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
AGBL5 MUTATED	7	3	1
AGBL5 WILD-TYPE	71	83	84

'AGBL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.36

Table S3715. Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
AGBL5 MUTATED	1	3	5	2
AGBL5 WILD-TYPE	32	75	46	85

'AGBL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.43

Table S3716. Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
AGBL5 MUTATED	4	1	0	2	1
AGBL5 WILD-TYPE	61	58	42	32	56

'AGBL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.063

Table S3717. Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
AGBL5 MUTATED	1	0	1	0	3	0	3
AGBL5 WILD-TYPE	35	21	47	56	36	37	17

Figure S1601. Get High-res Image Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 0.12

Table S3718. Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
AGBL5 MUTATED	9	3	0
AGBL5 WILD-TYPE	117	93	67

Figure S1602. Get High-res Image Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.26

Table S3719. Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
AGBL5 MUTATED	4	5	3	0
AGBL5 WILD-TYPE	52	100	57	68

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.73

Table S3720. Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
AGBL5 MUTATED	1	0	5	2	0	1
AGBL5 WILD-TYPE	33	18	54	36	19	42

'AGBL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 0.85

Table S3721. Gene #374: 'AGBL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
AGBL5 MUTATED	5	3	1
AGBL5 WILD-TYPE	117	48	37

'PLAG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0875 (Fisher's exact test), Q value = 0.19

Table S3722. Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLAG1 MUTATED	0	9	1	1	0
PLAG1 WILD-TYPE	79	117	26	42	12

'PLAG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.17

Table S3723. Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLAG1 MUTATED	0	5	0	2
PLAG1 WILD-TYPE	71	71	34	61

'PLAG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.77

Table S3724. Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PLAG1 MUTATED	3	2	4
PLAG1 WILD-TYPE	75	84	81

'PLAG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S3725. Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PLAG1 MUTATED	0	4	3	2
PLAG1 WILD-TYPE	33	74	48	85

'PLAG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.29

Table S3726. Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PLAG1 MUTATED	4	2	1	3	0
PLAG1 WILD-TYPE	61	57	41	31	57

'PLAG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.65

Table S3727. Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PLAG1 MUTATED	2	0	1	3	3	0	1
PLAG1 WILD-TYPE	34	21	47	53	36	37	19

'PLAG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00518 (Fisher's exact test), Q value = 0.035

Table S3728. Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PLAG1 MUTATED	10	1	0
PLAG1 WILD-TYPE	116	95	67

Figure S1603. Get High-res Image Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLAG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.064

Table S3729. Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PLAG1 MUTATED	6	4	1	0
PLAG1 WILD-TYPE	50	101	59	68

Figure S1604. Get High-res Image Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 0.95

Table S3730. Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PLAG1 MUTATED	1	1	3	1	0	1
PLAG1 WILD-TYPE	33	17	56	37	19	42

'PLAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.34

Table S3731. Gene #375: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PLAG1 MUTATED	3	1	3
PLAG1 WILD-TYPE	119	50	35

'HEPACAM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.18

Table S3732. Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HEPACAM2 MUTATED	0	6	2	0	0
HEPACAM2 WILD-TYPE	79	120	25	43	12

'HEPACAM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.73

Table S3733. Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HEPACAM2 MUTATED	1	3	0	1
HEPACAM2 WILD-TYPE	70	73	34	62

'HEPACAM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.27

Table S3734. Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HEPACAM2 MUTATED	5	1	2
HEPACAM2 WILD-TYPE	73	85	83

'HEPACAM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 0.78

Table S3735. Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HEPACAM2 MUTATED	1	2	3	2
HEPACAM2 WILD-TYPE	32	76	48	85

'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.21

Table S3736. Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HEPACAM2 MUTATED	4	1	0	2	0
HEPACAM2 WILD-TYPE	61	58	42	32	57

'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.066 (Fisher's exact test), Q value = 0.16

Table S3737. Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HEPACAM2 MUTATED	1	0	1	0	3	0	2
HEPACAM2 WILD-TYPE	35	21	47	56	36	37	18

'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.45

Table S3738. Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HEPACAM2 MUTATED	5	3	0
HEPACAM2 WILD-TYPE	121	93	67

'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.073

Table S3739. Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HEPACAM2 MUTATED	5	2	1	0
HEPACAM2 WILD-TYPE	51	103	59	68

Figure S1605. Get High-res Image Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 0.95

Table S3740. Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HEPACAM2 MUTATED	1	1	1	1	0	1
HEPACAM2 WILD-TYPE	33	17	58	37	19	42

'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.49

Table S3741. Gene #376: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HEPACAM2 MUTATED	2	1	2
HEPACAM2 WILD-TYPE	120	50	36

'CSF3R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0568 (Fisher's exact test), Q value = 0.15

Table S3742. Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CSF3R MUTATED	0	8	2	1	1
CSF3R WILD-TYPE	79	118	25	42	11

'CSF3R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.012

Table S3743. Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CSF3R MUTATED	0	8	1	0
CSF3R WILD-TYPE	71	68	33	63

Figure S1606. Get High-res Image Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSF3R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S3744. Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CSF3R MUTATED	5	1	5
CSF3R WILD-TYPE	73	85	80

'CSF3R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.51

Table S3745. Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CSF3R MUTATED	2	3	4	2
CSF3R WILD-TYPE	31	75	47	85

'CSF3R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.25

Table S3746. Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CSF3R MUTATED	6	2	2	2	0
CSF3R WILD-TYPE	59	57	40	32	57

'CSF3R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S3747. Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CSF3R MUTATED	0	0	1	4	3	1	3
CSF3R WILD-TYPE	36	21	47	52	36	36	17

'CSF3R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.093

Table S3748. Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CSF3R MUTATED	10	1	1
CSF3R WILD-TYPE	116	95	66

Figure S1607. Get High-res Image Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.064 (Fisher's exact test), Q value = 0.16

Table S3749. Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CSF3R MUTATED	6	4	1	1
CSF3R WILD-TYPE	50	101	59	67

'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.64

Table S3750. Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CSF3R MUTATED	1	2	4	1	0	1
CSF3R WILD-TYPE	33	16	55	37	19	42

'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.56

Table S3751. Gene #377: 'CSF3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CSF3R MUTATED	5	1	3
CSF3R WILD-TYPE	117	50	35

'RPGR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S3752. Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RPGR MUTATED	0	5	0	2	1
RPGR WILD-TYPE	79	121	27	41	11

'RPGR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00858 (Fisher's exact test), Q value = 0.048

Table S3753. Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RPGR MUTATED	0	6	1	0
RPGR WILD-TYPE	71	70	33	63

Figure S1608. Get High-res Image Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RPGR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.1

Table S3754. Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RPGR MUTATED	5	2	0
RPGR WILD-TYPE	73	84	85

Figure S1609. Get High-res Image Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RPGR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0534 (Fisher's exact test), Q value = 0.14

Table S3755. Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RPGR MUTATED	1	0	4	2
RPGR WILD-TYPE	32	78	47	85

'RPGR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.16

Table S3756. Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RPGR MUTATED	5	0	0	1	1
RPGR WILD-TYPE	60	59	42	33	56

'RPGR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.001 (Fisher's exact test), Q value = 0.013

Table S3757. Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RPGR MUTATED	0	1	0	0	3	0	3
RPGR WILD-TYPE	36	20	48	56	36	37	17

Figure S1610. Get High-res Image Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RPGR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.79

Table S3758. Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RPGR MUTATED	5	2	1
RPGR WILD-TYPE	121	94	66

'RPGR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.21

Table S3759. Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RPGR MUTATED	4	3	1	0
RPGR WILD-TYPE	52	102	59	68

'RPGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.73

Table S3760. Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RPGR MUTATED	1	0	1	2	0	0
RPGR WILD-TYPE	33	18	58	36	19	43

'RPGR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 0.86

Table S3761. Gene #378: 'RPGR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RPGR MUTATED	2	1	1
RPGR WILD-TYPE	120	50	37

'EPB49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.34

Table S3762. Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPB49 MUTATED	0	6	0	2	0
EPB49 WILD-TYPE	79	120	27	41	12

'EPB49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.47

Table S3763. Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPB49 MUTATED	0	3	1	1
EPB49 WILD-TYPE	71	73	33	62

'EPB49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.43

Table S3764. Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EPB49 MUTATED	4	2	1
EPB49 WILD-TYPE	74	84	84

'EPB49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0908 (Fisher's exact test), Q value = 0.19

Table S3765. Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EPB49 MUTATED	3	1	2	1
EPB49 WILD-TYPE	30	77	49	86

'EPB49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.086

Table S3766. Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EPB49 MUTATED	6	1	0	1	0
EPB49 WILD-TYPE	59	58	42	33	57

Figure S1611. Get High-res Image Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPB49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.44

Table S3767. Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EPB49 MUTATED	2	0	1	1	2	0	2
EPB49 WILD-TYPE	34	21	47	55	37	37	18

'EPB49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.15

Table S3768. Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EPB49 MUTATED	7	1	0
EPB49 WILD-TYPE	119	95	67

'EPB49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.075

Table S3769. Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EPB49 MUTATED	5	2	1	0
EPB49 WILD-TYPE	51	103	59	68

Figure S1612. Get High-res Image Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.69

Table S3770. Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EPB49 MUTATED	1	1	1	1	0	0
EPB49 WILD-TYPE	33	17	58	37	19	43

'EPB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 0.12

Table S3771. Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EPB49 MUTATED	1	0	3
EPB49 WILD-TYPE	121	51	35

Figure S1613. Get High-res Image Gene #379: 'EPB49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LRFN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.31

Table S3772. Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LRFN3 MUTATED	2	12	2	1	1
LRFN3 WILD-TYPE	77	114	25	42	11

'LRFN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.077

Table S3773. Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LRFN3 MUTATED	1	10	2	2
LRFN3 WILD-TYPE	70	66	32	61

Figure S1614. Get High-res Image Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRFN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.06

Table S3774. Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LRFN3 MUTATED	10	2	3
LRFN3 WILD-TYPE	68	84	82

Figure S1615. Get High-res Image Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LRFN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00098 (Fisher's exact test), Q value = 0.013

Table S3775. Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LRFN3 MUTATED	4	4	7	0
LRFN3 WILD-TYPE	29	74	44	87

Figure S1616. Get High-res Image Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LRFN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0514 (Fisher's exact test), Q value = 0.14

Table S3776. Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LRFN3 MUTATED	9	2	4	1	1
LRFN3 WILD-TYPE	56	57	38	33	56

'LRFN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0417 (Fisher's exact test), Q value = 0.12

Table S3777. Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LRFN3 MUTATED	3	1	0	6	2	1	4
LRFN3 WILD-TYPE	33	20	48	50	37	36	16

Figure S1617. Get High-res Image Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRFN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 0.2

Table S3778. Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LRFN3 MUTATED	11	2	5
LRFN3 WILD-TYPE	115	94	62

'LRFN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.064

Table S3779. Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LRFN3 MUTATED	9	5	1	3
LRFN3 WILD-TYPE	47	100	59	65

Figure S1618. Get High-res Image Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LRFN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S3780. Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LRFN3 MUTATED	1	2	3	5	0	1
LRFN3 WILD-TYPE	33	16	56	33	19	42

'LRFN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00309 (Fisher's exact test), Q value = 0.026

Table S3781. Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LRFN3 MUTATED	4	1	7
LRFN3 WILD-TYPE	118	50	31

Figure S1619. Get High-res Image Gene #380: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GRK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.71

Table S3782. Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GRK4 MUTATED	0	2	0	1	0
GRK4 WILD-TYPE	79	124	27	42	12

'GRK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.11

Table S3783. Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GRK4 MUTATED	0	4	0	0
GRK4 WILD-TYPE	71	72	34	63

Figure S1620. Get High-res Image Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GRK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S3784. Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GRK4 MUTATED	3	0	0	0	0
GRK4 WILD-TYPE	62	59	42	34	57

'GRK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0673 (Fisher's exact test), Q value = 0.16

Table S3785. Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GRK4 MUTATED	0	0	0	0	2	0	1
GRK4 WILD-TYPE	36	21	48	56	37	37	19

'GRK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S3786. Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GRK4 MUTATED	4	0	0
GRK4 WILD-TYPE	122	96	67

'GRK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00133 (Fisher's exact test), Q value = 0.015

Table S3787. Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GRK4 MUTATED	4	0	0	0
GRK4 WILD-TYPE	52	105	60	68

Figure S1621. Get High-res Image Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.73

Table S3788. Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GRK4 MUTATED	1	0	1	2	0	0
GRK4 WILD-TYPE	33	18	58	36	19	43

'GRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.001 (Fisher's exact test), Q value = 0.013

Table S3789. Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GRK4 MUTATED	0	0	4
GRK4 WILD-TYPE	122	51	34

Figure S1622. Get High-res Image Gene #381: 'GRK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.74

Table S3790. Gene #382: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF23 MUTATED	2	1	0	0	0
ZNF23 WILD-TYPE	63	58	42	34	57

'ZNF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S3791. Gene #382: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF23 MUTATED	1	0	0	0	1	0	1
ZNF23 WILD-TYPE	35	21	48	56	38	37	19

'ZNF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 0.85

Table S3792. Gene #382: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF23 MUTATED	2	1	0
ZNF23 WILD-TYPE	124	95	67

'ZNF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.77

Table S3793. Gene #382: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF23 MUTATED	1	1	1	0
ZNF23 WILD-TYPE	55	104	59	68

'SERPINB8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.35

Table S3794. Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SERPINB8 MUTATED	1	6	0	0	1
SERPINB8 WILD-TYPE	78	120	27	43	11

'SERPINB8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.36

Table S3795. Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SERPINB8 MUTATED	1	5	0	1
SERPINB8 WILD-TYPE	70	71	34	62

'SERPINB8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.84

Table S3796. Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SERPINB8 MUTATED	1	2	3
SERPINB8 WILD-TYPE	77	84	82

'SERPINB8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S3797. Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SERPINB8 MUTATED	2	1	2	1
SERPINB8 WILD-TYPE	31	77	49	86

'SERPINB8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.16

Table S3798. Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SERPINB8 MUTATED	4	0	1	2	0
SERPINB8 WILD-TYPE	61	59	41	32	57

'SERPINB8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.13

Table S3799. Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SERPINB8 MUTATED	1	0	0	2	1	0	3
SERPINB8 WILD-TYPE	35	21	48	54	38	37	17

Figure S1623. Get High-res Image Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.79

Table S3800. Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SERPINB8 MUTATED	5	2	1
SERPINB8 WILD-TYPE	121	94	66

'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S3801. Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SERPINB8 MUTATED	4	3	1	0
SERPINB8 WILD-TYPE	52	102	59	68

'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S3802. Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SERPINB8 MUTATED	0	2	3	1	0	0
SERPINB8 WILD-TYPE	34	16	56	37	19	43

'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3803. Gene #383: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SERPINB8 MUTATED	4	1	1
SERPINB8 WILD-TYPE	118	50	37

'ERBB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.55

Table S3804. Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ERBB4 MUTATED	7	20	5	4	2
ERBB4 WILD-TYPE	72	106	22	39	10

'ERBB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.11

Table S3805. Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ERBB4 MUTATED	7	17	4	4
ERBB4 WILD-TYPE	64	59	30	59

Figure S1624. Get High-res Image Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ERBB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.19

Table S3806. Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ERBB4 MUTATED	17	8	13
ERBB4 WILD-TYPE	61	78	72

'ERBB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.25

Table S3807. Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ERBB4 MUTATED	4	8	13	13
ERBB4 WILD-TYPE	29	70	38	74

'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.13

Table S3808. Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ERBB4 MUTATED	13	6	3	9	5
ERBB4 WILD-TYPE	52	53	39	25	52

'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.45

Table S3809. Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ERBB4 MUTATED	7	2	5	9	9	2	2
ERBB4 WILD-TYPE	29	19	43	47	30	35	18

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.25

Table S3810. Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ERBB4 MUTATED	22	8	9
ERBB4 WILD-TYPE	104	88	58

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.034 (Fisher's exact test), Q value = 0.11

Table S3811. Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ERBB4 MUTATED	14	9	6	10
ERBB4 WILD-TYPE	42	96	54	58

Figure S1625. Get High-res Image Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.61

Table S3812. Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ERBB4 MUTATED	5	5	8	5	4	4
ERBB4 WILD-TYPE	29	13	51	33	15	39

'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.32

Table S3813. Gene #384: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ERBB4 MUTATED	19	4	8
ERBB4 WILD-TYPE	103	47	30

'WDR59 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.49

Table S3814. Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WDR59 MUTATED	3	6	0	0	1
WDR59 WILD-TYPE	76	120	27	43	11

'WDR59 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.32

Table S3815. Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WDR59 MUTATED	3	4	0	0
WDR59 WILD-TYPE	68	72	34	63

'WDR59 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.12

Table S3816. Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
WDR59 MUTATED	5	0	4
WDR59 WILD-TYPE	73	86	81

Figure S1626. Get High-res Image Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WDR59 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.066

Table S3817. Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
WDR59 MUTATED	0	5	4	0
WDR59 WILD-TYPE	33	73	47	87

Figure S1627. Get High-res Image Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WDR59 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S3818. Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
WDR59 MUTATED	2	1	2	4	2
WDR59 WILD-TYPE	63	58	40	30	55

'WDR59 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 0.17

Table S3819. Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
WDR59 MUTATED	1	0	0	4	5	1	0
WDR59 WILD-TYPE	35	21	48	52	34	36	20

'WDR59 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S3820. Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
WDR59 MUTATED	8	1	2
WDR59 WILD-TYPE	118	95	65

'WDR59 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0421 (Fisher's exact test), Q value = 0.12

Table S3821. Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
WDR59 MUTATED	6	2	1	2
WDR59 WILD-TYPE	50	103	59	66

Figure S1628. Get High-res Image Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WDR59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.55

Table S3822. Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
WDR59 MUTATED	1	2	1	1	1	1
WDR59 WILD-TYPE	33	16	58	37	18	42

'WDR59 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.13

Table S3823. Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
WDR59 MUTATED	2	1	4
WDR59 WILD-TYPE	120	50	34

Figure S1629. Get High-res Image Gene #385: 'WDR59 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SPHK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.64

Table S3824. Gene #386: 'SPHK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SPHK2 MUTATED	0	3	0	0	0
SPHK2 WILD-TYPE	79	123	27	43	12

'SPHK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.45

Table S3825. Gene #386: 'SPHK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SPHK2 MUTATED	3	0	0
SPHK2 WILD-TYPE	123	96	67

'SPHK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.36

Table S3826. Gene #386: 'SPHK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SPHK2 MUTATED	2	1	0	0
SPHK2 WILD-TYPE	54	104	60	68

'RUSC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.14

Table S3827. Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RUSC2 MUTATED	1	14	2	2	0
RUSC2 WILD-TYPE	78	112	25	41	12

'RUSC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00411 (Fisher's exact test), Q value = 0.03

Table S3828. Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RUSC2 MUTATED	0	10	3	3
RUSC2 WILD-TYPE	71	66	31	60

Figure S1630. Get High-res Image Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RUSC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 0.2

Table S3829. Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RUSC2 MUTATED	9	3	4
RUSC2 WILD-TYPE	69	83	81

'RUSC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S3830. Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RUSC2 MUTATED	2	6	6	2
RUSC2 WILD-TYPE	31	72	45	85

'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.052

Table S3831. Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RUSC2 MUTATED	8	1	4	2	0
RUSC2 WILD-TYPE	57	58	38	32	57

Figure S1631. Get High-res Image Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.095

Table S3832. Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RUSC2 MUTATED	4	0	0	6	3	0	2
RUSC2 WILD-TYPE	32	21	48	50	36	37	18

Figure S1632. Get High-res Image Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00181 (Fisher's exact test), Q value = 0.019

Table S3833. Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RUSC2 MUTATED	15	4	0
RUSC2 WILD-TYPE	111	92	67

Figure S1633. Get High-res Image Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0943 (Fisher's exact test), Q value = 0.2

Table S3834. Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RUSC2 MUTATED	7	7	4	1
RUSC2 WILD-TYPE	49	98	56	67

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.26

Table S3835. Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RUSC2 MUTATED	0	2	7	4	0	2
RUSC2 WILD-TYPE	34	16	52	34	19	41

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.31

Table S3836. Gene #387: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RUSC2 MUTATED	6	4	5
RUSC2 WILD-TYPE	116	47	33

'CHST15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.17

Table S3837. Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CHST15 MUTATED	1	10	2	0	0
CHST15 WILD-TYPE	78	116	25	43	12

'CHST15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00274 (Fisher's exact test), Q value = 0.024

Table S3838. Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CHST15 MUTATED	0	6	3	0
CHST15 WILD-TYPE	71	70	31	63

Figure S1634. Get High-res Image Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CHST15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.012

Table S3839. Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CHST15 MUTATED	9	0	3
CHST15 WILD-TYPE	69	86	82

Figure S1635. Get High-res Image Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CHST15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00892 (Fisher's exact test), Q value = 0.049

Table S3840. Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CHST15 MUTATED	3	4	5	0
CHST15 WILD-TYPE	30	74	46	87

Figure S1636. Get High-res Image Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CHST15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.057

Table S3841. Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CHST15 MUTATED	6	0	3	1	0
CHST15 WILD-TYPE	59	59	39	33	57

Figure S1637. Get High-res Image Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CHST15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0728 (Fisher's exact test), Q value = 0.17

Table S3842. Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CHST15 MUTATED	2	0	0	5	1	0	2
CHST15 WILD-TYPE	34	21	48	51	38	37	18

'CHST15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.064

Table S3843. Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CHST15 MUTATED	11	1	1
CHST15 WILD-TYPE	115	95	66

Figure S1638. Get High-res Image Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CHST15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.08

Table S3844. Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CHST15 MUTATED	7	4	1	1
CHST15 WILD-TYPE	49	101	59	67

Figure S1639. Get High-res Image Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CHST15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.38

Table S3845. Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CHST15 MUTATED	0	0	3	4	0	1
CHST15 WILD-TYPE	34	18	56	34	19	42

'CHST15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.48

Table S3846. Gene #388: 'CHST15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CHST15 MUTATED	4	1	3
CHST15 WILD-TYPE	118	50	35

'TAF1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S3847. Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TAF1L MUTATED	3	15	3	1	1
TAF1L WILD-TYPE	76	111	24	42	11

'TAF1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S3848. Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TAF1L MUTATED	2	9	3	3
TAF1L WILD-TYPE	69	67	31	60

'TAF1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 0.17

Table S3849. Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TAF1L MUTATED	11	4	5
TAF1L WILD-TYPE	67	82	80

'TAF1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.27

Table S3850. Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TAF1L MUTATED	3	4	8	5
TAF1L WILD-TYPE	30	74	43	82

'TAF1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.096

Table S3851. Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TAF1L MUTATED	12	3	1	2	3
TAF1L WILD-TYPE	53	56	41	32	54

Figure S1640. Get High-res Image Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TAF1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 0.89

Table S3852. Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TAF1L MUTATED	2	2	3	6	3	2	3
TAF1L WILD-TYPE	34	19	45	50	36	35	17

'TAF1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S3853. Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TAF1L MUTATED	14	7	2
TAF1L WILD-TYPE	112	89	65

'TAF1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0622 (Fisher's exact test), Q value = 0.15

Table S3854. Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TAF1L MUTATED	9	9	2	3
TAF1L WILD-TYPE	47	96	58	65

'TAF1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 0.87

Table S3855. Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TAF1L MUTATED	4	2	5	2	1	2
TAF1L WILD-TYPE	30	16	54	36	18	41

'TAF1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.75

Table S3856. Gene #389: 'TAF1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TAF1L MUTATED	9	3	4
TAF1L WILD-TYPE	113	48	34

'USP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.59

Table S3857. Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
USP8 MUTATED	1	6	0	0	0
USP8 WILD-TYPE	78	120	27	43	12

'USP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0963 (Fisher's exact test), Q value = 0.2

Table S3858. Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
USP8 MUTATED	0	3	1	0
USP8 WILD-TYPE	71	73	33	63

'USP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.092

Table S3859. Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
USP8 MUTATED	4	0	1
USP8 WILD-TYPE	74	86	84

Figure S1641. Get High-res Image Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'USP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00532 (Fisher's exact test), Q value = 0.036

Table S3860. Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
USP8 MUTATED	2	0	3	0
USP8 WILD-TYPE	31	78	48	87

Figure S1642. Get High-res Image Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'USP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.11

Table S3861. Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
USP8 MUTATED	3	0	1	3	0
USP8 WILD-TYPE	62	59	41	31	57

Figure S1643. Get High-res Image Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0859 (Fisher's exact test), Q value = 0.19

Table S3862. Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
USP8 MUTATED	0	0	0	3	2	0	2
USP8 WILD-TYPE	36	21	48	53	37	37	18

'USP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0095 (Fisher's exact test), Q value = 0.05

Table S3863. Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
USP8 MUTATED	7	0	0
USP8 WILD-TYPE	119	96	67

Figure S1644. Get High-res Image Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'USP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00668 (Fisher's exact test), Q value = 0.04

Table S3864. Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
USP8 MUTATED	5	2	0	0
USP8 WILD-TYPE	51	103	60	68

Figure S1645. Get High-res Image Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'USP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.44

Table S3865. Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
USP8 MUTATED	0	1	1	2	0	0
USP8 WILD-TYPE	34	17	58	36	19	43

'USP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.31

Table S3866. Gene #390: 'USP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
USP8 MUTATED	2	0	2
USP8 WILD-TYPE	120	51	36

'MYB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.52

Table S3867. Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MYB MUTATED	0	5	0	1	0
MYB WILD-TYPE	79	121	27	42	12

'MYB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0977 (Fisher's exact test), Q value = 0.2

Table S3868. Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MYB MUTATED	0	3	1	0
MYB WILD-TYPE	71	73	33	63

'MYB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.56

Table S3869. Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MYB MUTATED	3	1	1
MYB WILD-TYPE	75	85	84

'MYB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00502 (Fisher's exact test), Q value = 0.034

Table S3870. Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MYB MUTATED	2	0	3	0
MYB WILD-TYPE	31	78	48	87

Figure S1646. Get High-res Image Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MYB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.11

Table S3871. Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MYB MUTATED	5	0	0	0	1
MYB WILD-TYPE	60	59	42	34	56

Figure S1647. Get High-res Image Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MYB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00373 (Fisher's exact test), Q value = 0.029

Table S3872. Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MYB MUTATED	1	0	0	0	2	0	3
MYB WILD-TYPE	35	21	48	56	37	37	17

Figure S1648. Get High-res Image Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MYB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.077

Table S3873. Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MYB MUTATED	6	0	0
MYB WILD-TYPE	120	96	67

Figure S1649. Get High-res Image Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MYB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0025 (Fisher's exact test), Q value = 0.023

Table S3874. Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MYB MUTATED	5	1	0	0
MYB WILD-TYPE	51	104	60	68

Figure S1650. Get High-res Image Gene #391: 'MYB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CREM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S3875. Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CREM MUTATED	0	3	0	1	0
CREM WILD-TYPE	79	123	27	42	12

'CREM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0975 (Fisher's exact test), Q value = 0.2

Table S3876. Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CREM MUTATED	0	3	1	0
CREM WILD-TYPE	71	73	33	63

'CREM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.43

Table S3877. Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CREM MUTATED	2	1	0
CREM WILD-TYPE	76	85	85

'CREM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.081

Table S3878. Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CREM MUTATED	2	0	1	0
CREM WILD-TYPE	31	78	50	87

Figure S1651. Get High-res Image Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CREM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.23

Table S3879. Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CREM MUTATED	3	0	0	1	0
CREM WILD-TYPE	62	59	42	33	57

'CREM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 0.85

Table S3880. Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CREM MUTATED	1	0	0	2	1	0	0
CREM WILD-TYPE	35	21	48	54	38	37	20

'CREM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S3881. Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CREM MUTATED	4	0	0
CREM WILD-TYPE	122	96	67

'CREM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00146 (Fisher's exact test), Q value = 0.016

Table S3882. Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CREM MUTATED	4	0	0	0
CREM WILD-TYPE	52	105	60	68

Figure S1652. Get High-res Image Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CREM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.18

Table S3883. Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CREM MUTATED	1	2	1	0	0	0
CREM WILD-TYPE	33	16	58	38	19	43

'CREM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.31

Table S3884. Gene #392: 'CREM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CREM MUTATED	2	0	2
CREM WILD-TYPE	120	51	36

'CD93 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.34

Table S3885. Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CD93 MUTATED	1	8	0	1	1
CD93 WILD-TYPE	78	118	27	42	11

'CD93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.073

Table S3886. Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CD93 MUTATED	1	7	1	0
CD93 WILD-TYPE	70	69	33	63

Figure S1653. Get High-res Image Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD93 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.14

Table S3887. Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CD93 MUTATED	7	1	3
CD93 WILD-TYPE	71	85	82

'CD93 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S3888. Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CD93 MUTATED	2	0	8	1
CD93 WILD-TYPE	31	78	43	86

Figure S1654. Get High-res Image Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CD93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.52

Table S3889. Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CD93 MUTATED	4	1	0	2	2
CD93 WILD-TYPE	61	58	42	32	55

'CD93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.071 (Fisher's exact test), Q value = 0.17

Table S3890. Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CD93 MUTATED	0	0	1	1	3	1	3
CD93 WILD-TYPE	36	21	47	55	36	36	17

'CD93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.075

Table S3891. Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CD93 MUTATED	8	0	3
CD93 WILD-TYPE	118	96	64

Figure S1655. Get High-res Image Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CD93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00377 (Fisher's exact test), Q value = 0.029

Table S3892. Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CD93 MUTATED	7	2	0	2
CD93 WILD-TYPE	49	103	60	66

Figure S1656. Get High-res Image Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.38

Table S3893. Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CD93 MUTATED	2	2	2	1	0	0
CD93 WILD-TYPE	32	16	57	37	19	43

'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.39

Table S3894. Gene #393: 'CD93 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CD93 MUTATED	5	0	2
CD93 WILD-TYPE	117	51	36

'B3GNT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.22

Table S3895. Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
B3GNT5 MUTATED	0	8	0	2	0
B3GNT5 WILD-TYPE	79	118	27	41	12

'B3GNT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.53

Table S3896. Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
B3GNT5 MUTATED	1	5	1	2
B3GNT5 WILD-TYPE	70	71	33	61

'B3GNT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0914 (Fisher's exact test), Q value = 0.2

Table S3897. Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
B3GNT5 MUTATED	6	1	2
B3GNT5 WILD-TYPE	72	85	83

'B3GNT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 0.62

Table S3898. Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
B3GNT5 MUTATED	2	2	3	2
B3GNT5 WILD-TYPE	31	76	48	85

'B3GNT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.35

Table S3899. Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
B3GNT5 MUTATED	6	1	1	1	1
B3GNT5 WILD-TYPE	59	58	41	33	56

'B3GNT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.08

Table S3900. Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
B3GNT5 MUTATED	3	0	0	1	4	0	2
B3GNT5 WILD-TYPE	33	21	48	55	35	37	18

Figure S1657. Get High-res Image Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.056

Table S3901. Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
B3GNT5 MUTATED	9	1	0
B3GNT5 WILD-TYPE	117	95	67

Figure S1658. Get High-res Image Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.081

Table S3902. Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
B3GNT5 MUTATED	4	6	0	0
B3GNT5 WILD-TYPE	52	99	60	68

Figure S1659. Get High-res Image Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.47

Table S3903. Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
B3GNT5 MUTATED	2	1	2	3	0	0
B3GNT5 WILD-TYPE	32	17	57	35	19	43

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S3904. Gene #394: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
B3GNT5 MUTATED	5	0	3
B3GNT5 WILD-TYPE	117	51	35

'ART1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.59

Table S3905. Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ART1 MUTATED	1	6	0	0	0
ART1 WILD-TYPE	78	120	27	43	12

'ART1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.53

Table S3906. Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ART1 MUTATED	1	3	1	0
ART1 WILD-TYPE	70	73	33	63

'ART1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.28

Table S3907. Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ART1 MUTATED	3	0	2
ART1 WILD-TYPE	75	86	83

'ART1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.059 (Fisher's exact test), Q value = 0.15

Table S3908. Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ART1 MUTATED	1	1	3	0
ART1 WILD-TYPE	32	77	48	87

'ART1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.16

Table S3909. Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ART1 MUTATED	3	0	0	3	1
ART1 WILD-TYPE	62	59	42	31	56

'ART1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.33

Table S3910. Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ART1 MUTATED	0	0	0	2	2	1	2
ART1 WILD-TYPE	36	21	48	54	37	36	18

'ART1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0487 (Fisher's exact test), Q value = 0.13

Table S3911. Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ART1 MUTATED	6	0	1
ART1 WILD-TYPE	120	96	66

Figure S1660. Get High-res Image Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ART1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.053

Table S3912. Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ART1 MUTATED	5	1	0	1
ART1 WILD-TYPE	51	104	60	67

Figure S1661. Get High-res Image Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.53

Table S3913. Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ART1 MUTATED	0	1	3	1	0	0
ART1 WILD-TYPE	34	17	56	37	19	43

'ART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.41

Table S3914. Gene #395: 'ART1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ART1 MUTATED	3	0	2
ART1 WILD-TYPE	119	51	36

'IKBKE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.14

Table S3915. Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IKBKE MUTATED	0	10	1	1	0
IKBKE WILD-TYPE	79	116	26	42	12

'IKBKE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.19

Table S3916. Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IKBKE MUTATED	2	7	0	1
IKBKE WILD-TYPE	69	69	34	62

'IKBKE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.063

Table S3917. Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IKBKE MUTATED	8	1	2
IKBKE WILD-TYPE	70	85	83

Figure S1662. Get High-res Image Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IKBKE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.11

Table S3918. Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IKBKE MUTATED	1	3	6	1
IKBKE WILD-TYPE	32	75	45	86

Figure S1663. Get High-res Image Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IKBKE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00735 (Fisher's exact test), Q value = 0.043

Table S3919. Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IKBKE MUTATED	4	0	3	4	0
IKBKE WILD-TYPE	61	59	39	30	57

Figure S1664. Get High-res Image Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IKBKE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.24

Table S3920. Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IKBKE MUTATED	2	0	0	5	3	0	1
IKBKE WILD-TYPE	34	21	48	51	36	37	19

'IKBKE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.07

Table S3921. Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IKBKE MUTATED	10	2	0
IKBKE WILD-TYPE	116	94	67

Figure S1665. Get High-res Image Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IKBKE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0036 (Fisher's exact test), Q value = 0.028

Table S3922. Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IKBKE MUTATED	6	6	0	0
IKBKE WILD-TYPE	50	99	60	68

Figure S1666. Get High-res Image Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IKBKE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.072

Table S3923. Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IKBKE MUTATED	2	4	2	2	0	0
IKBKE WILD-TYPE	32	14	57	36	19	43

Figure S1667. Get High-res Image Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'IKBKE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 0.14

Table S3924. Gene #396: 'IKBKE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IKBKE MUTATED	6	0	4
IKBKE WILD-TYPE	116	51	34

'TIMM44 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.27

Table S3925. Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TIMM44 MUTATED	0	4	0	0	1
TIMM44 WILD-TYPE	79	122	27	43	11

'TIMM44 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.062

Table S3926. Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TIMM44 MUTATED	0	5	0	0
TIMM44 WILD-TYPE	71	71	34	63

Figure S1668. Get High-res Image Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TIMM44 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S3927. Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TIMM44 MUTATED	3	1	0
TIMM44 WILD-TYPE	75	85	85

'TIMM44 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.061

Table S3928. Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TIMM44 MUTATED	2	0	2	0
TIMM44 WILD-TYPE	31	78	49	87

Figure S1669. Get High-res Image Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TIMM44 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0424 (Fisher's exact test), Q value = 0.12

Table S3929. Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TIMM44 MUTATED	4	0	0	1	0
TIMM44 WILD-TYPE	61	59	42	33	57

Figure S1670. Get High-res Image Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TIMM44 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00572 (Fisher's exact test), Q value = 0.037

Table S3930. Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TIMM44 MUTATED	0	0	0	0	3	0	2
TIMM44 WILD-TYPE	36	21	48	56	36	37	18

Figure S1671. Get High-res Image Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TIMM44 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.37

Table S3931. Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TIMM44 MUTATED	3	0	2
TIMM44 WILD-TYPE	123	96	65

'TIMM44 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.005

Table S3932. Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TIMM44 MUTATED	5	0	0	0
TIMM44 WILD-TYPE	51	105	60	68

Figure S1672. Get High-res Image Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TIMM44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.73

Table S3933. Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TIMM44 MUTATED	1	0	1	2	0	0
TIMM44 WILD-TYPE	33	18	58	36	19	43

'TIMM44 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.12

Table S3934. Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TIMM44 MUTATED	1	0	3
TIMM44 WILD-TYPE	121	51	35

Figure S1673. Get High-res Image Gene #397: 'TIMM44 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ELOVL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3935. Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ELOVL2 MUTATED	2	4	0	1	0
ELOVL2 WILD-TYPE	77	122	27	42	12

'ELOVL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.44

Table S3936. Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ELOVL2 MUTATED	2	2	2	0
ELOVL2 WILD-TYPE	69	74	32	63

'ELOVL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.16

Table S3937. Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ELOVL2 MUTATED	4	0	2
ELOVL2 WILD-TYPE	74	86	83

'ELOVL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0744 (Fisher's exact test), Q value = 0.17

Table S3938. Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ELOVL2 MUTATED	0	1	4	1
ELOVL2 WILD-TYPE	33	77	47	86

'ELOVL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.55

Table S3939. Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ELOVL2 MUTATED	3	0	1	0	2
ELOVL2 WILD-TYPE	62	59	41	34	55

'ELOVL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.46

Table S3940. Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ELOVL2 MUTATED	1	1	0	1	0	2	1
ELOVL2 WILD-TYPE	35	20	48	55	39	35	19

'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.26

Table S3941. Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ELOVL2 MUTATED	5	0	2
ELOVL2 WILD-TYPE	121	96	65

'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.37

Table S3942. Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ELOVL2 MUTATED	3	2	0	2
ELOVL2 WILD-TYPE	53	103	60	66

'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.44

Table S3943. Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ELOVL2 MUTATED	2	0	3	0	0	0
ELOVL2 WILD-TYPE	32	18	56	38	19	43

'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.35

Table S3944. Gene #398: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ELOVL2 MUTATED	5	0	0
ELOVL2 WILD-TYPE	117	51	38

'ALDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S3945. Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ALDH2 MUTATED	0	6	2	1	0
ALDH2 WILD-TYPE	79	120	25	42	12

'ALDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 0.15

Table S3946. Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ALDH2 MUTATED	0	5	2	1
ALDH2 WILD-TYPE	71	71	32	62

'ALDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.12

Table S3947. Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ALDH2 MUTATED	5	0	3
ALDH2 WILD-TYPE	73	86	82

Figure S1674. Get High-res Image Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ALDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0456 (Fisher's exact test), Q value = 0.13

Table S3948. Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ALDH2 MUTATED	0	2	5	1
ALDH2 WILD-TYPE	33	76	46	86

Figure S1675. Get High-res Image Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.46

Table S3949. Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ALDH2 MUTATED	3	0	1	2	1
ALDH2 WILD-TYPE	62	59	41	32	56

'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.092

Table S3950. Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ALDH2 MUTATED	1	0	0	1	2	0	3
ALDH2 WILD-TYPE	35	21	48	55	37	37	17

Figure S1676. Get High-res Image Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.23

Table S3951. Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ALDH2 MUTATED	7	2	0
ALDH2 WILD-TYPE	119	94	67

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.27

Table S3952. Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ALDH2 MUTATED	2	6	1	0
ALDH2 WILD-TYPE	54	99	59	68

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 0.93

Table S3953. Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ALDH2 MUTATED	1	1	2	2	0	1
ALDH2 WILD-TYPE	33	17	57	36	19	42

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 0.92

Table S3954. Gene #399: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ALDH2 MUTATED	5	1	1
ALDH2 WILD-TYPE	117	50	37

'H2AFY2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 0.84

Table S3955. Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
H2AFY2 MUTATED	1	5	0	1	0
H2AFY2 WILD-TYPE	78	121	27	42	12

'H2AFY2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S3956. Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
H2AFY2 MUTATED	1	4	0	0
H2AFY2 WILD-TYPE	70	72	34	63

'H2AFY2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S3957. Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
H2AFY2 MUTATED	5	1	1
H2AFY2 WILD-TYPE	73	85	84

'H2AFY2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 0.81

Table S3958. Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
H2AFY2 MUTATED	1	1	2	3
H2AFY2 WILD-TYPE	32	77	49	84

'H2AFY2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 0.81

Table S3959. Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
H2AFY2 MUTATED	1	2	2	0	1
H2AFY2 WILD-TYPE	64	57	40	34	56

'H2AFY2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 0.93

Table S3960. Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
H2AFY2 MUTATED	1	0	1	2	0	1	1
H2AFY2 WILD-TYPE	35	21	47	54	39	36	19

'H2AFY2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.7

Table S3961. Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
H2AFY2 MUTATED	4	1	2
H2AFY2 WILD-TYPE	122	95	65

'H2AFY2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.61

Table S3962. Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
H2AFY2 MUTATED	1	3	0	3
H2AFY2 WILD-TYPE	55	102	60	65

'H2AFY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.092

Table S3963. Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
H2AFY2 MUTATED	2	2	0	1	0	0
H2AFY2 WILD-TYPE	32	16	59	37	19	43

Figure S1677. Get High-res Image Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'H2AFY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.41

Table S3964. Gene #400: 'H2AFY2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
H2AFY2 MUTATED	3	0	2
H2AFY2 WILD-TYPE	119	51	36

'SOHLH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.62

Table S3965. Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SOHLH2 MUTATED	5	4	2	2	1
SOHLH2 WILD-TYPE	74	122	25	41	11

'SOHLH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.36

Table S3966. Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SOHLH2 MUTATED	4	7	1	1
SOHLH2 WILD-TYPE	67	69	33	62

'SOHLH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.66

Table S3967. Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SOHLH2 MUTATED	2	5	5
SOHLH2 WILD-TYPE	76	81	80

'SOHLH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.66

Table S3968. Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SOHLH2 MUTATED	0	5	3	4
SOHLH2 WILD-TYPE	33	73	48	83

'SOHLH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 0.8

Table S3969. Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SOHLH2 MUTATED	3	3	3	2	1
SOHLH2 WILD-TYPE	62	56	39	32	56

'SOHLH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 0.67

Table S3970. Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SOHLH2 MUTATED	0	0	3	4	3	1	1
SOHLH2 WILD-TYPE	36	21	45	52	36	36	19

'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 0.88

Table S3971. Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SOHLH2 MUTATED	5	5	4
SOHLH2 WILD-TYPE	121	91	63

'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00443 (Fisher's exact test), Q value = 0.032

Table S3972. Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SOHLH2 MUTATED	5	0	4	5
SOHLH2 WILD-TYPE	51	105	56	63

Figure S1678. Get High-res Image Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.44

Table S3973. Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SOHLH2 MUTATED	4	1	1	2	0	3
SOHLH2 WILD-TYPE	30	17	58	36	19	40

'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0245 (Fisher's exact test), Q value = 0.088

Table S3974. Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SOHLH2 MUTATED	3	3	5
SOHLH2 WILD-TYPE	119	48	33

Figure S1679. Get High-res Image Gene #401: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CROT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0681 (Fisher's exact test), Q value = 0.16

Table S3975. Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CROT MUTATED	0	9	0	2	0
CROT WILD-TYPE	79	117	27	41	12

'CROT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.22

Table S3976. Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CROT MUTATED	0	5	2	2
CROT WILD-TYPE	71	71	32	61

'CROT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.12

Table S3977. Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CROT MUTATED	7	1	2
CROT WILD-TYPE	71	85	83

Figure S1680. Get High-res Image Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CROT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0053 (Fisher's exact test), Q value = 0.036

Table S3978. Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CROT MUTATED	1	3	6	0
CROT WILD-TYPE	32	75	45	87

Figure S1681. Get High-res Image Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CROT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.088

Table S3979. Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CROT MUTATED	7	0	1	1	1
CROT WILD-TYPE	58	59	41	33	56

Figure S1682. Get High-res Image Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CROT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0481 (Fisher's exact test), Q value = 0.13

Table S3980. Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CROT MUTATED	1	1	0	2	3	0	3
CROT WILD-TYPE	35	20	48	54	36	37	17

Figure S1683. Get High-res Image Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CROT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.13

Table S3981. Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CROT MUTATED	9	1	1
CROT WILD-TYPE	117	95	66

Figure S1684. Get High-res Image Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CROT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0037 (Fisher's exact test), Q value = 0.029

Table S3982. Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CROT MUTATED	7	3	0	1
CROT WILD-TYPE	49	102	60	67

Figure S1685. Get High-res Image Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CROT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.5

Table S3983. Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CROT MUTATED	2	1	1	2	0	0
CROT WILD-TYPE	32	17	58	36	19	43

'CROT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0912 (Fisher's exact test), Q value = 0.19

Table S3984. Gene #402: 'CROT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CROT MUTATED	3	0	3
CROT WILD-TYPE	119	51	35

'GON4L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S3985. Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GON4L MUTATED	1	8	0	0	1
GON4L WILD-TYPE	78	118	27	43	11

'GON4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00224 (Fisher's exact test), Q value = 0.021

Table S3986. Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GON4L MUTATED	0	7	2	0
GON4L WILD-TYPE	71	69	32	63

Figure S1686. Get High-res Image Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GON4L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.4

Table S3987. Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GON4L MUTATED	4	1	4
GON4L WILD-TYPE	74	85	81

'GON4L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.052

Table S3988. Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GON4L MUTATED	3	2	4	0
GON4L WILD-TYPE	30	76	47	87

Figure S1687. Get High-res Image Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GON4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0993 (Fisher's exact test), Q value = 0.21

Table S3989. Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GON4L MUTATED	6	1	0	1	1
GON4L WILD-TYPE	59	58	42	33	56

'GON4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00437 (Fisher's exact test), Q value = 0.031

Table S3990. Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GON4L MUTATED	2	0	0	1	2	0	4
GON4L WILD-TYPE	34	21	48	55	37	37	16

Figure S1688. Get High-res Image Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GON4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.32

Table S3991. Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GON4L MUTATED	7	1	2
GON4L WILD-TYPE	119	95	65

'GON4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0289 (Fisher's exact test), Q value = 0.096

Table S3992. Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GON4L MUTATED	6	2	1	1
GON4L WILD-TYPE	50	103	59	67

Figure S1689. Get High-res Image Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.66

Table S3993. Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GON4L MUTATED	0	0	4	2	0	1
GON4L WILD-TYPE	34	18	55	36	19	42

'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 0.92

Table S3994. Gene #403: 'GON4L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GON4L MUTATED	5	1	1
GON4L WILD-TYPE	117	50	37

'CNKSR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 0.98

Table S3995. Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CNKSR2 MUTATED	3	7	1	1	0
CNKSR2 WILD-TYPE	76	119	26	42	12

'CNKSR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3996. Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CNKSR2 MUTATED	2	3	1	2
CNKSR2 WILD-TYPE	69	73	33	61

'CNKSR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0808 (Fisher's exact test), Q value = 0.18

Table S3997. Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CNKSR2 MUTATED	4	1	7
CNKSR2 WILD-TYPE	74	85	78

'CNKSR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S3998. Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CNKSR2 MUTATED	3	5	3	1
CNKSR2 WILD-TYPE	30	73	48	86

'CNKSR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.53

Table S3999. Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CNKSR2 MUTATED	3	3	0	3	2
CNKSR2 WILD-TYPE	62	56	42	31	55

'CNKSR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.27

Table S4000. Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CNKSR2 MUTATED	3	1	0	1	3	1	2
CNKSR2 WILD-TYPE	33	20	48	55	36	36	18

'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.092

Table S4001. Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CNKSR2 MUTATED	10	1	1
CNKSR2 WILD-TYPE	116	95	66

Figure S1690. Get High-res Image Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.39

Table S4002. Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CNKSR2 MUTATED	3	6	0	3
CNKSR2 WILD-TYPE	53	99	60	65

'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 0.95

Table S4003. Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CNKSR2 MUTATED	1	1	3	1	0	1
CNKSR2 WILD-TYPE	33	17	56	37	19	42

'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 0.81

Table S4004. Gene #404: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CNKSR2 MUTATED	4	1	2
CNKSR2 WILD-TYPE	118	50	36

'UHRF1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00105 (Fisher's exact test), Q value = 0.013

Table S4005. Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
UHRF1BP1 MUTATED	0	14	0	0	1
UHRF1BP1 WILD-TYPE	79	112	27	43	11

Figure S1691. Get High-res Image Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0065 (Fisher's exact test), Q value = 0.04

Table S4006. Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
UHRF1BP1 MUTATED	0	9	2	2
UHRF1BP1 WILD-TYPE	71	67	32	61

Figure S1692. Get High-res Image Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0612 (Fisher's exact test), Q value = 0.15

Table S4007. Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
UHRF1BP1 MUTATED	7	4	1
UHRF1BP1 WILD-TYPE	71	82	84

'UHRF1BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00288 (Fisher's exact test), Q value = 0.025

Table S4008. Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
UHRF1BP1 MUTATED	5	0	4	3
UHRF1BP1 WILD-TYPE	28	78	47	84

Figure S1693. Get High-res Image Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00245 (Fisher's exact test), Q value = 0.023

Table S4009. Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
UHRF1BP1 MUTATED	8	0	3	2	0
UHRF1BP1 WILD-TYPE	57	59	39	32	57

Figure S1694. Get High-res Image Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.12

Table S4010. Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
UHRF1BP1 MUTATED	4	0	0	5	2	0	2
UHRF1BP1 WILD-TYPE	32	21	48	51	37	37	18

Figure S1695. Get High-res Image Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.06

Table S4011. Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
UHRF1BP1 MUTATED	12	2	1
UHRF1BP1 WILD-TYPE	114	94	66

Figure S1696. Get High-res Image Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00187 (Fisher's exact test), Q value = 0.019

Table S4012. Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
UHRF1BP1 MUTATED	8	6	1	0
UHRF1BP1 WILD-TYPE	48	99	59	68

Figure S1697. Get High-res Image Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.016

Table S4013. Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
UHRF1BP1 MUTATED	1	4	7	0	0	0
UHRF1BP1 WILD-TYPE	33	14	52	38	19	43

Figure S1698. Get High-res Image Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.53

Table S4014. Gene #405: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
UHRF1BP1 MUTATED	8	1	3
UHRF1BP1 WILD-TYPE	114	50	35

'OR7C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.42

Table S4015. Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR7C1 MUTATED	0	5	0	0	0
OR7C1 WILD-TYPE	79	121	27	43	12

'OR7C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.15

Table S4016. Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR7C1 MUTATED	0	4	1	0
OR7C1 WILD-TYPE	71	72	33	63

'OR7C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.43

Table S4017. Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OR7C1 MUTATED	2	1	0
OR7C1 WILD-TYPE	76	85	85

'OR7C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.38

Table S4018. Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OR7C1 MUTATED	0	0	2	1
OR7C1 WILD-TYPE	33	78	49	86

'OR7C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.12

Table S4019. Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OR7C1 MUTATED	4	0	0	1	0
OR7C1 WILD-TYPE	61	59	42	33	57

Figure S1699. Get High-res Image Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OR7C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0685 (Fisher's exact test), Q value = 0.16

Table S4020. Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OR7C1 MUTATED	0	0	0	1	2	0	2
OR7C1 WILD-TYPE	36	21	48	55	37	37	18

'OR7C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.29

Table S4021. Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OR7C1 MUTATED	5	1	0
OR7C1 WILD-TYPE	121	95	67

'OR7C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 0.55

Table S4022. Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OR7C1 MUTATED	2	3	1	0
OR7C1 WILD-TYPE	54	102	59	68

'OR7C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.59

Table S4023. Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OR7C1 MUTATED	1	1	1	2	0	0
OR7C1 WILD-TYPE	33	17	58	36	19	43

'OR7C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.49

Table S4024. Gene #406: 'OR7C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OR7C1 MUTATED	2	1	2
OR7C1 WILD-TYPE	120	50	36

'ABLIM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.16

Table S4025. Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ABLIM2 MUTATED	0	9	0	1	0
ABLIM2 WILD-TYPE	79	117	27	42	12

'ABLIM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.27

Table S4026. Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ABLIM2 MUTATED	1	6	0	2
ABLIM2 WILD-TYPE	70	70	34	61

'ABLIM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.27

Table S4027. Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ABLIM2 MUTATED	6	2	2
ABLIM2 WILD-TYPE	72	84	83

'ABLIM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.41

Table S4028. Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ABLIM2 MUTATED	2	2	4	2
ABLIM2 WILD-TYPE	31	76	47	85

'ABLIM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.34

Table S4029. Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ABLIM2 MUTATED	4	1	2	2	0
ABLIM2 WILD-TYPE	61	58	40	32	57

'ABLIM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.57

Table S4030. Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ABLIM2 MUTATED	1	0	1	3	2	0	2
ABLIM2 WILD-TYPE	35	21	47	53	37	37	18

'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0702 (Fisher's exact test), Q value = 0.17

Table S4031. Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ABLIM2 MUTATED	8	3	0
ABLIM2 WILD-TYPE	118	93	67

'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 0.45

Table S4032. Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ABLIM2 MUTATED	4	5	1	1
ABLIM2 WILD-TYPE	52	100	59	67

'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S4033. Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ABLIM2 MUTATED	1	3	3	2	0	0
ABLIM2 WILD-TYPE	33	15	56	36	19	43

'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0938 (Fisher's exact test), Q value = 0.2

Table S4034. Gene #407: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ABLIM2 MUTATED	3	2	4
ABLIM2 WILD-TYPE	119	49	34

'TPTE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.77

Table S4035. Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TPTE2 MUTATED	4	5	1	0	0
TPTE2 WILD-TYPE	75	121	26	43	12

'TPTE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.65

Table S4036. Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TPTE2 MUTATED	4	2	0	2
TPTE2 WILD-TYPE	67	74	34	61

'TPTE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.29

Table S4037. Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TPTE2 MUTATED	5	1	3
TPTE2 WILD-TYPE	73	85	82

'TPTE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 0.91

Table S4038. Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TPTE2 MUTATED	1	4	2	2
TPTE2 WILD-TYPE	32	74	49	85

'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.15

Table S4039. Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TPTE2 MUTATED	2	0	0	3	1
TPTE2 WILD-TYPE	63	59	42	31	56

'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.055 (Fisher's exact test), Q value = 0.14

Table S4040. Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TPTE2 MUTATED	1	0	1	0	4	0	0
TPTE2 WILD-TYPE	35	21	47	56	35	37	20

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.78

Table S4041. Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TPTE2 MUTATED	5	2	3
TPTE2 WILD-TYPE	121	94	64

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.33

Table S4042. Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TPTE2 MUTATED	3	3	0	4
TPTE2 WILD-TYPE	53	102	60	64

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S4043. Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TPTE2 MUTATED	3	1	2	0	1	0
TPTE2 WILD-TYPE	31	17	57	38	18	43

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S4044. Gene #408: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TPTE2 MUTATED	6	0	1
TPTE2 WILD-TYPE	116	51	37

'OLFML3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.57

Table S4045. Gene #409: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OLFML3 MUTATED	0	4	0	0	0
OLFML3 WILD-TYPE	79	122	27	43	12

'OLFML3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.7

Table S4046. Gene #409: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OLFML3 MUTATED	0	2	0	1
OLFML3 WILD-TYPE	71	74	34	62

'OLFML3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.099

Table S4047. Gene #409: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OLFML3 MUTATED	3	0	0
OLFML3 WILD-TYPE	75	86	85

Figure S1700. Get High-res Image Gene #409: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OLFML3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S4048. Gene #409: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OLFML3 MUTATED	0	1	2	0
OLFML3 WILD-TYPE	33	77	49	87

'OLFML3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S4049. Gene #409: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OLFML3 MUTATED	4	0	0
OLFML3 WILD-TYPE	122	96	67

'OLFML3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0634 (Fisher's exact test), Q value = 0.16

Table S4050. Gene #409: 'OLFML3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OLFML3 MUTATED	3	1	0	0
OLFML3 WILD-TYPE	53	104	60	68

'RINT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.24

Table S4051. Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RINT1 MUTATED	0	3	2	0	0
RINT1 WILD-TYPE	79	123	25	43	12

'RINT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0597 (Fisher's exact test), Q value = 0.15

Table S4052. Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RINT1 MUTATED	0	4	1	0
RINT1 WILD-TYPE	71	72	33	63

'RINT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.51

Table S4053. Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RINT1 MUTATED	2	0	2
RINT1 WILD-TYPE	76	86	83

'RINT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0483 (Fisher's exact test), Q value = 0.13

Table S4054. Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RINT1 MUTATED	0	1	3	0
RINT1 WILD-TYPE	33	77	48	87

Figure S1701. Get High-res Image Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RINT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.32

Table S4055. Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RINT1 MUTATED	3	0	1	1	0
RINT1 WILD-TYPE	62	59	41	33	57

'RINT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0981 (Fisher's exact test), Q value = 0.2

Table S4056. Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RINT1 MUTATED	0	0	0	1	3	0	1
RINT1 WILD-TYPE	36	21	48	55	36	37	19

'RINT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.15

Table S4057. Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RINT1 MUTATED	5	0	0
RINT1 WILD-TYPE	121	96	67

'RINT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0787 (Fisher's exact test), Q value = 0.18

Table S4058. Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RINT1 MUTATED	3	2	0	0
RINT1 WILD-TYPE	53	103	60	68

'RINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.76

Table S4059. Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RINT1 MUTATED	1	1	2	1	0	0
RINT1 WILD-TYPE	33	17	57	37	19	43

'RINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.41

Table S4060. Gene #410: 'RINT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RINT1 MUTATED	3	0	2
RINT1 WILD-TYPE	119	51	36

'CA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.42

Table S4061. Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CA2 MUTATED	0	5	0	0	0
CA2 WILD-TYPE	79	121	27	43	12

'CA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S4062. Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CA2 MUTATED	1	4	0	0
CA2 WILD-TYPE	70	72	34	63

'CA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.28

Table S4063. Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CA2 MUTATED	3	0	2
CA2 WILD-TYPE	75	86	83

'CA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00934 (Fisher's exact test), Q value = 0.05

Table S4064. Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CA2 MUTATED	0	1	4	0
CA2 WILD-TYPE	33	77	47	87

Figure S1702. Get High-res Image Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.32

Table S4065. Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CA2 MUTATED	3	0	1	1	0
CA2 WILD-TYPE	62	59	41	33	57

'CA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0687 (Fisher's exact test), Q value = 0.16

Table S4066. Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CA2 MUTATED	0	0	0	1	2	0	2
CA2 WILD-TYPE	36	21	48	55	37	37	18

'CA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.32

Table S4067. Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CA2 MUTATED	4	0	1
CA2 WILD-TYPE	122	96	66

'CA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0808 (Fisher's exact test), Q value = 0.18

Table S4068. Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CA2 MUTATED	3	2	0	0
CA2 WILD-TYPE	53	103	60	68

'CA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.59

Table S4069. Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CA2 MUTATED	1	1	1	2	0	0
CA2 WILD-TYPE	33	17	58	36	19	43

'CA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00484 (Fisher's exact test), Q value = 0.033

Table S4070. Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CA2 MUTATED	1	0	4
CA2 WILD-TYPE	121	51	34

Figure S1703. Get High-res Image Gene #411: 'CA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.076

Table S4071. Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IRS1 MUTATED	2	15	2	0	1
IRS1 WILD-TYPE	77	111	25	43	11

Figure S1704. Get High-res Image Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.11

Table S4072. Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IRS1 MUTATED	1	10	2	4
IRS1 WILD-TYPE	70	66	32	59

Figure S1705. Get High-res Image Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.052

Table S4073. Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IRS1 MUTATED	11	2	4
IRS1 WILD-TYPE	67	84	81

Figure S1706. Get High-res Image Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0578 (Fisher's exact test), Q value = 0.15

Table S4074. Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IRS1 MUTATED	2	4	8	3
IRS1 WILD-TYPE	31	74	43	84

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00331 (Fisher's exact test), Q value = 0.027

Table S4075. Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IRS1 MUTATED	11	2	3	2	0
IRS1 WILD-TYPE	54	57	39	32	57

Figure S1707. Get High-res Image Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00211 (Fisher's exact test), Q value = 0.021

Table S4076. Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IRS1 MUTATED	4	0	1	4	3	0	6
IRS1 WILD-TYPE	32	21	47	52	36	37	14

Figure S1708. Get High-res Image Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.061

Table S4077. Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IRS1 MUTATED	15	4	1
IRS1 WILD-TYPE	111	92	66

Figure S1709. Get High-res Image Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00275 (Fisher's exact test), Q value = 0.024

Table S4078. Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IRS1 MUTATED	9	8	3	0
IRS1 WILD-TYPE	47	97	57	68

Figure S1710. Get High-res Image Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.32

Table S4079. Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IRS1 MUTATED	3	0	8	3	0	1
IRS1 WILD-TYPE	31	18	51	35	19	42

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.32

Table S4080. Gene #412: 'IRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IRS1 MUTATED	10	1	4
IRS1 WILD-TYPE	112	50	34

'FKBP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S4081. Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FKBP9 MUTATED	0	5	0	0	1
FKBP9 WILD-TYPE	79	121	27	43	11

'FKBP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.15

Table S4082. Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FKBP9 MUTATED	0	4	1	0
FKBP9 WILD-TYPE	71	72	33	63

'FKBP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.32

Table S4083. Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FKBP9 MUTATED	3	2	0
FKBP9 WILD-TYPE	75	84	85

'FKBP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.27

Table S4084. Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FKBP9 MUTATED	2	0	1	2
FKBP9 WILD-TYPE	31	78	50	85

'FKBP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.29

Table S4085. Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FKBP9 MUTATED	4	1	0	1	0
FKBP9 WILD-TYPE	61	58	42	33	57

'FKBP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00898 (Fisher's exact test), Q value = 0.049

Table S4086. Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FKBP9 MUTATED	1	1	0	1	0	0	3
FKBP9 WILD-TYPE	35	20	48	55	39	37	17

Figure S1711. Get High-res Image Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FKBP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4087. Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FKBP9 MUTATED	3	2	1
FKBP9 WILD-TYPE	123	94	66

'FKBP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0316 (Fisher's exact test), Q value = 0.1

Table S4088. Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FKBP9 MUTATED	4	1	1	0
FKBP9 WILD-TYPE	52	104	59	68

Figure S1712. Get High-res Image Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FKBP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.62

Table S4089. Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FKBP9 MUTATED	0	0	2	2	0	0
FKBP9 WILD-TYPE	34	18	57	36	19	43

'FKBP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4090. Gene #413: 'FKBP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FKBP9 MUTATED	3	1	0
FKBP9 WILD-TYPE	119	50	38

'LMTK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.59

Table S4091. Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LMTK3 MUTATED	1	6	0	0	0
LMTK3 WILD-TYPE	78	120	27	43	12

'LMTK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.59

Table S4092. Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LMTK3 MUTATED	1	4	0	2
LMTK3 WILD-TYPE	70	72	34	61

'LMTK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.66

Table S4093. Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LMTK3 MUTATED	3	1	3
LMTK3 WILD-TYPE	75	85	82

'LMTK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.58

Table S4094. Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LMTK3 MUTATED	1	4	1	1
LMTK3 WILD-TYPE	32	74	50	86

'LMTK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.13

Table S4095. Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LMTK3 MUTATED	5	0	0	2	1
LMTK3 WILD-TYPE	60	59	42	32	56

Figure S1713. Get High-res Image Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LMTK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.29

Table S4096. Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LMTK3 MUTATED	1	0	0	1	3	1	2
LMTK3 WILD-TYPE	35	21	48	55	36	36	18

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S4097. Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LMTK3 MUTATED	5	1	2
LMTK3 WILD-TYPE	121	95	65

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.23

Table S4098. Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LMTK3 MUTATED	4	3	0	1
LMTK3 WILD-TYPE	52	102	60	67

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.44

Table S4099. Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LMTK3 MUTATED	3	0	2	2	0	0
LMTK3 WILD-TYPE	31	18	57	36	19	43

'LMTK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S4100. Gene #414: 'LMTK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LMTK3 MUTATED	4	0	3
LMTK3 WILD-TYPE	118	51	35

'DNAH5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.1

Table S4101. Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DNAH5 MUTATED	10	34	2	6	3
DNAH5 WILD-TYPE	69	92	25	37	9

Figure S1714. Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAH5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.0088

Table S4102. Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DNAH5 MUTATED	6	25	8	7
DNAH5 WILD-TYPE	65	51	26	56

Figure S1715. Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAH5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.0078

Table S4103. Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DNAH5 MUTATED	27	10	12
DNAH5 WILD-TYPE	51	76	73

Figure S1716. Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DNAH5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S4104. Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DNAH5 MUTATED	8	11	15	15
DNAH5 WILD-TYPE	25	67	36	72

'DNAH5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00153 (Fisher's exact test), Q value = 0.017

Table S4105. Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DNAH5 MUTATED	24	6	8	7	6
DNAH5 WILD-TYPE	41	53	34	27	51

Figure S1717. Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DNAH5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00322 (Fisher's exact test), Q value = 0.027

Table S4106. Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DNAH5 MUTATED	13	3	4	10	8	4	9
DNAH5 WILD-TYPE	23	18	44	46	31	33	11

Figure S1718. Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 0.012

Table S4107. Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DNAH5 MUTATED	37	11	8
DNAH5 WILD-TYPE	89	85	59

Figure S1719. Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0044

Table S4108. Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DNAH5 MUTATED	22	21	5	8
DNAH5 WILD-TYPE	34	84	55	60

Figure S1720. Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.11

Table S4109. Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DNAH5 MUTATED	4	3	18	10	4	3
DNAH5 WILD-TYPE	30	15	41	28	15	40

Figure S1721. Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00557 (Fisher's exact test), Q value = 0.036

Table S4110. Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DNAH5 MUTATED	32	3	7
DNAH5 WILD-TYPE	90	48	31

Figure S1722. Get High-res Image Gene #415: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPATCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.3

Table S4111. Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPATCH2 MUTATED	0	6	1	0	0
GPATCH2 WILD-TYPE	79	120	26	43	12

'GPATCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.3

Table S4112. Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPATCH2 MUTATED	0	2	2	1
GPATCH2 WILD-TYPE	71	74	32	62

'GPATCH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.22

Table S4113. Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GPATCH2 MUTATED	3	0	4
GPATCH2 WILD-TYPE	75	86	81

'GPATCH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00405 (Fisher's exact test), Q value = 0.03

Table S4114. Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GPATCH2 MUTATED	1	1	5	0
GPATCH2 WILD-TYPE	32	77	46	87

Figure S1723. Get High-res Image Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPATCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S4115. Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GPATCH2 MUTATED	4	0	1	1	0
GPATCH2 WILD-TYPE	61	59	41	33	57

'GPATCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.35

Table S4116. Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GPATCH2 MUTATED	1	0	0	2	1	0	2
GPATCH2 WILD-TYPE	35	21	48	54	38	37	18

'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 0.17

Table S4117. Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GPATCH2 MUTATED	6	1	0
GPATCH2 WILD-TYPE	120	95	67

'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00928 (Fisher's exact test), Q value = 0.05

Table S4118. Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GPATCH2 MUTATED	5	1	1	0
GPATCH2 WILD-TYPE	51	104	59	68

Figure S1724. Get High-res Image Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.47

Table S4119. Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GPATCH2 MUTATED	0	0	4	0	0	1
GPATCH2 WILD-TYPE	34	18	55	38	19	42

'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4120. Gene #416: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GPATCH2 MUTATED	3	1	1
GPATCH2 WILD-TYPE	119	50	37

'KCNH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.21

Table S4121. Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCNH2 MUTATED	1	8	1	1	2
KCNH2 WILD-TYPE	78	118	26	42	10

'KCNH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.6

Table S4122. Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCNH2 MUTATED	2	5	1	1
KCNH2 WILD-TYPE	69	71	33	62

'KCNH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.078

Table S4123. Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KCNH2 MUTATED	6	0	4
KCNH2 WILD-TYPE	72	86	81

Figure S1725. Get High-res Image Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KCNH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S4124. Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KCNH2 MUTATED	2	3	4	1
KCNH2 WILD-TYPE	31	75	47	86

'KCNH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.064

Table S4125. Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KCNH2 MUTATED	8	0	2	2	1
KCNH2 WILD-TYPE	57	59	40	32	56

Figure S1726. Get High-res Image Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KCNH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.26

Table S4126. Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KCNH2 MUTATED	2	0	0	6	2	1	2
KCNH2 WILD-TYPE	34	21	48	50	37	36	18

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.12

Table S4127. Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KCNH2 MUTATED	10	1	2
KCNH2 WILD-TYPE	116	95	65

Figure S1727. Get High-res Image Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00759 (Fisher's exact test), Q value = 0.044

Table S4128. Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KCNH2 MUTATED	7	5	0	1
KCNH2 WILD-TYPE	49	100	60	67

Figure S1728. Get High-res Image Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.22

Table S4129. Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KCNH2 MUTATED	1	2	2	4	0	0
KCNH2 WILD-TYPE	33	16	57	34	19	43

'KCNH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00138 (Fisher's exact test), Q value = 0.016

Table S4130. Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KCNH2 MUTATED	3	0	6
KCNH2 WILD-TYPE	119	51	32

Figure S1729. Get High-res Image Gene #417: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SGOL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.18

Table S4131. Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SGOL2 MUTATED	0	8	1	1	1
SGOL2 WILD-TYPE	79	118	26	42	11

'SGOL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.11

Table S4132. Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SGOL2 MUTATED	1	6	2	0
SGOL2 WILD-TYPE	70	70	32	63

Figure S1730. Get High-res Image Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SGOL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0591 (Fisher's exact test), Q value = 0.15

Table S4133. Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SGOL2 MUTATED	7	3	1
SGOL2 WILD-TYPE	71	83	84

'SGOL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.25

Table S4134. Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SGOL2 MUTATED	2	2	5	2
SGOL2 WILD-TYPE	31	76	46	85

'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.11

Table S4135. Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SGOL2 MUTATED	6	1	2	0	0
SGOL2 WILD-TYPE	59	58	40	34	57

Figure S1731. Get High-res Image Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.6

Table S4136. Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SGOL2 MUTATED	1	1	1	3	1	0	2
SGOL2 WILD-TYPE	35	20	47	53	38	37	18

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.33

Table S4137. Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SGOL2 MUTATED	8	2	1
SGOL2 WILD-TYPE	118	94	66

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.3

Table S4138. Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SGOL2 MUTATED	5	4	1	1
SGOL2 WILD-TYPE	51	101	59	67

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.45

Table S4139. Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SGOL2 MUTATED	1	1	5	0	0	1
SGOL2 WILD-TYPE	33	17	54	38	19	42

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S4140. Gene #418: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SGOL2 MUTATED	6	1	1
SGOL2 WILD-TYPE	116	50	37

'ADAMTSL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.079

Table S4141. Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ADAMTSL4 MUTATED	0	11	2	1	1
ADAMTSL4 WILD-TYPE	79	115	25	42	11

Figure S1732. Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00856 (Fisher's exact test), Q value = 0.048

Table S4142. Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ADAMTSL4 MUTATED	0	7	3	1
ADAMTSL4 WILD-TYPE	71	69	31	62

Figure S1733. Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00124 (Fisher's exact test), Q value = 0.015

Table S4143. Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ADAMTSL4 MUTATED	9	0	3
ADAMTSL4 WILD-TYPE	69	86	82

Figure S1734. Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00633 (Fisher's exact test), Q value = 0.039

Table S4144. Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ADAMTSL4 MUTATED	2	4	6	0
ADAMTSL4 WILD-TYPE	31	74	45	87

Figure S1735. Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ADAMTSL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.12

Table S4145. Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ADAMTSL4 MUTATED	6	0	2	3	1
ADAMTSL4 WILD-TYPE	59	59	40	31	56

Figure S1736. Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0254 (Fisher's exact test), Q value = 0.09

Table S4146. Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ADAMTSL4 MUTATED	1	0	0	7	3	0	1
ADAMTSL4 WILD-TYPE	35	21	48	49	36	37	19

Figure S1737. Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADAMTSL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.0064

Table S4147. Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ADAMTSL4 MUTATED	14	1	0
ADAMTSL4 WILD-TYPE	112	95	67

Figure S1738. Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADAMTSL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00211 (Fisher's exact test), Q value = 0.021

Table S4148. Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ADAMTSL4 MUTATED	9	4	1	1
ADAMTSL4 WILD-TYPE	47	101	59	67

Figure S1739. Get High-res Image Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ADAMTSL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.66

Table S4149. Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ADAMTSL4 MUTATED	2	2	4	1	0	1
ADAMTSL4 WILD-TYPE	32	16	55	37	19	42

'ADAMTSL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.3

Table S4150. Gene #419: 'ADAMTSL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ADAMTSL4 MUTATED	5	1	4
ADAMTSL4 WILD-TYPE	117	50	34

'CPB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.15

Table S4151. Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CPB2 MUTATED	0	8	0	0	0
CPB2 WILD-TYPE	79	118	27	43	12

'CPB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.07

Table S4152. Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CPB2 MUTATED	0	6	0	1
CPB2 WILD-TYPE	71	70	34	62

Figure S1740. Get High-res Image Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CPB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.29

Table S4153. Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CPB2 MUTATED	5	2	1
CPB2 WILD-TYPE	73	84	84

'CPB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.33

Table S4154. Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CPB2 MUTATED	1	1	4	2
CPB2 WILD-TYPE	32	77	47	85

'CPB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.14

Table S4155. Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CPB2 MUTATED	5	2	0	0	0
CPB2 WILD-TYPE	60	57	42	34	57

'CPB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 0.85

Table S4156. Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CPB2 MUTATED	1	0	1	3	1	0	1
CPB2 WILD-TYPE	35	21	47	53	38	37	19

'CPB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S4157. Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CPB2 MUTATED	7	2	0
CPB2 WILD-TYPE	119	94	67

'CPB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S4158. Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CPB2 MUTATED	4	4	1	0
CPB2 WILD-TYPE	52	101	59	68

'CPB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.67

Table S4159. Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CPB2 MUTATED	1	1	3	2	0	0
CPB2 WILD-TYPE	33	17	56	36	19	43

'CPB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 0.81

Table S4160. Gene #420: 'CPB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CPB2 MUTATED	4	1	2
CPB2 WILD-TYPE	118	50	36

'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.15

Table S4161. Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
THEMIS MUTATED	0	8	0	0	0
THEMIS WILD-TYPE	79	118	27	43	12

'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.22

Table S4162. Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
THEMIS MUTATED	0	4	0	1
THEMIS WILD-TYPE	71	72	34	62

'THEMIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.11

Table S4163. Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
THEMIS MUTATED	6	1	1
THEMIS WILD-TYPE	72	85	84

Figure S1741. Get High-res Image Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'THEMIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00451 (Fisher's exact test), Q value = 0.032

Table S4164. Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
THEMIS MUTATED	2	0	5	1
THEMIS WILD-TYPE	31	78	46	86

Figure S1742. Get High-res Image Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.12

Table S4165. Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
THEMIS MUTATED	4	0	0	1	0
THEMIS WILD-TYPE	61	59	42	33	57

Figure S1743. Get High-res Image Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.47

Table S4166. Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
THEMIS MUTATED	2	0	0	1	2	0	0
THEMIS WILD-TYPE	34	21	48	55	37	37	20

'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.15

Table S4167. Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
THEMIS MUTATED	7	1	0
THEMIS WILD-TYPE	119	95	67

'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00222 (Fisher's exact test), Q value = 0.021

Table S4168. Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
THEMIS MUTATED	6	1	1	0
THEMIS WILD-TYPE	50	104	59	68

Figure S1744. Get High-res Image Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.44

Table S4169. Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
THEMIS MUTATED	2	0	3	0	0	0
THEMIS WILD-TYPE	32	18	56	38	19	43

'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.41

Table S4170. Gene #421: 'THEMIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
THEMIS MUTATED	3	0	2
THEMIS WILD-TYPE	119	51	36

'KRTAP10-9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.28

Table S4171. Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KRTAP10-9 MUTATED	1	7	0	0	1
KRTAP10-9 WILD-TYPE	78	119	27	43	11

'KRTAP10-9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.36

Table S4172. Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KRTAP10-9 MUTATED	1	5	0	1
KRTAP10-9 WILD-TYPE	70	71	34	62

'KRTAP10-9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0745 (Fisher's exact test), Q value = 0.17

Table S4173. Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KRTAP10-9 MUTATED	4	0	4
KRTAP10-9 WILD-TYPE	74	86	81

'KRTAP10-9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S4174. Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KRTAP10-9 MUTATED	1	3	3	1
KRTAP10-9 WILD-TYPE	32	75	48	86

'KRTAP10-9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0698 (Fisher's exact test), Q value = 0.17

Table S4175. Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KRTAP10-9 MUTATED	5	1	0	1	0
KRTAP10-9 WILD-TYPE	60	58	42	33	57

'KRTAP10-9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.28

Table S4176. Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KRTAP10-9 MUTATED	2	0	0	1	3	0	1
KRTAP10-9 WILD-TYPE	34	21	48	55	36	37	19

'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S4177. Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KRTAP10-9 MUTATED	7	2	0
KRTAP10-9 WILD-TYPE	119	94	67

'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00541 (Fisher's exact test), Q value = 0.036

Table S4178. Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KRTAP10-9 MUTATED	6	2	1	0
KRTAP10-9 WILD-TYPE	50	103	59	68

Figure S1745. Get High-res Image Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 0.91

Table S4179. Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KRTAP10-9 MUTATED	2	0	2	2	0	1
KRTAP10-9 WILD-TYPE	32	18	57	36	19	42

'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.34

Table S4180. Gene #422: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KRTAP10-9 MUTATED	3	1	3
KRTAP10-9 WILD-TYPE	119	50	35

'SGK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.61

Table S4181. Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SGK3 MUTATED	0	4	0	1	0
SGK3 WILD-TYPE	79	122	27	42	12

'SGK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S4182. Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SGK3 MUTATED	0	3	0	0
SGK3 WILD-TYPE	71	73	34	63

'SGK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00262 (Fisher's exact test), Q value = 0.024

Table S4183. Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SGK3 MUTATED	5	0	0
SGK3 WILD-TYPE	73	86	85

Figure S1746. Get High-res Image Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SGK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0816 (Fisher's exact test), Q value = 0.18

Table S4184. Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SGK3 MUTATED	1	0	3	1
SGK3 WILD-TYPE	32	78	48	86

'SGK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 0.98

Table S4185. Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SGK3 MUTATED	1	1	0	1	1
SGK3 WILD-TYPE	64	58	42	33	56

'SGK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S4186. Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SGK3 MUTATED	1	0	0	0	1	0	2
SGK3 WILD-TYPE	35	21	48	56	38	37	18

Figure S1747. Get High-res Image Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SGK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.43

Table S4187. Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SGK3 MUTATED	4	1	0
SGK3 WILD-TYPE	122	95	67

'SGK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.4

Table S4188. Gene #423: 'SGK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SGK3 MUTATED	2	3	0	0
SGK3 WILD-TYPE	54	102	60	68

'YIF1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.64

Table S4189. Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
YIF1A MUTATED	0	3	0	0	0
YIF1A WILD-TYPE	79	123	27	43	12

'YIF1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.33

Table S4190. Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
YIF1A MUTATED	2	0	1
YIF1A WILD-TYPE	76	86	84

'YIF1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S4191. Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
YIF1A MUTATED	0	0	2	1
YIF1A WILD-TYPE	33	78	49	86

'YIF1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.37

Table S4192. Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
YIF1A MUTATED	2	0	0	1	0
YIF1A WILD-TYPE	63	59	42	33	57

'YIF1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.0063

Table S4193. Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
YIF1A MUTATED	0	0	0	0	0	0	3
YIF1A WILD-TYPE	36	21	48	56	39	37	17

Figure S1748. Get High-res Image Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'YIF1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.85

Table S4194. Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
YIF1A MUTATED	2	1	0
YIF1A WILD-TYPE	124	95	67

'YIF1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 0.62

Table S4195. Gene #424: 'YIF1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
YIF1A MUTATED	1	2	0	0
YIF1A WILD-TYPE	55	103	60	68

'EGR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.11

Table S4196. Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EGR1 MUTATED	0	8	1	0	1
EGR1 WILD-TYPE	79	118	26	43	11

Figure S1749. Get High-res Image Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EGR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 0.16

Table S4197. Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EGR1 MUTATED	0	5	2	1
EGR1 WILD-TYPE	71	71	32	62

'EGR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.014

Table S4198. Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EGR1 MUTATED	7	0	1
EGR1 WILD-TYPE	71	86	84

Figure S1750. Get High-res Image Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EGR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.074

Table S4199. Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EGR1 MUTATED	3	2	3	0
EGR1 WILD-TYPE	30	76	48	87

Figure S1751. Get High-res Image Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.1

Table S4200. Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EGR1 MUTATED	5	0	1	2	0
EGR1 WILD-TYPE	60	59	41	32	57

Figure S1752. Get High-res Image Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.31

Table S4201. Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EGR1 MUTATED	1	0	0	3	2	0	2
EGR1 WILD-TYPE	35	21	48	53	37	37	18

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.055

Table S4202. Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EGR1 MUTATED	9	1	0
EGR1 WILD-TYPE	117	95	67

Figure S1753. Get High-res Image Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0289 (Fisher's exact test), Q value = 0.096

Table S4203. Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EGR1 MUTATED	6	2	1	1
EGR1 WILD-TYPE	50	103	59	67

Figure S1754. Get High-res Image Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.71

Table S4204. Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EGR1 MUTATED	1	0	5	1	0	1
EGR1 WILD-TYPE	33	18	54	37	19	42

'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.48

Table S4205. Gene #425: 'EGR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EGR1 MUTATED	4	1	3
EGR1 WILD-TYPE	118	50	35

'GTF3C4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00517 (Fisher's exact test), Q value = 0.035

Table S4206. Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GTF3C4 MUTATED	0	12	0	0	0
GTF3C4 WILD-TYPE	79	114	27	43	12

Figure S1755. Get High-res Image Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GTF3C4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00578 (Fisher's exact test), Q value = 0.037

Table S4207. Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GTF3C4 MUTATED	0	8	1	1
GTF3C4 WILD-TYPE	71	68	33	62

Figure S1756. Get High-res Image Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GTF3C4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.4

Table S4208. Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GTF3C4 MUTATED	6	3	2
GTF3C4 WILD-TYPE	72	83	83

'GTF3C4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0756 (Fisher's exact test), Q value = 0.17

Table S4209. Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GTF3C4 MUTATED	4	1	3	3
GTF3C4 WILD-TYPE	29	77	48	84

'GTF3C4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.066

Table S4210. Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GTF3C4 MUTATED	7	2	0	1	0
GTF3C4 WILD-TYPE	58	57	42	33	57

Figure S1757. Get High-res Image Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GTF3C4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.059

Table S4211. Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GTF3C4 MUTATED	3	0	0	1	3	0	3
GTF3C4 WILD-TYPE	33	21	48	55	36	37	17

Figure S1758. Get High-res Image Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.12

Table S4212. Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GTF3C4 MUTATED	9	3	0
GTF3C4 WILD-TYPE	117	93	67

Figure S1759. Get High-res Image Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0245 (Fisher's exact test), Q value = 0.088

Table S4213. Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GTF3C4 MUTATED	6	4	2	0
GTF3C4 WILD-TYPE	50	101	58	68

Figure S1760. Get High-res Image Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.42

Table S4214. Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GTF3C4 MUTATED	2	0	5	2	0	0
GTF3C4 WILD-TYPE	32	18	54	36	19	43

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S4215. Gene #426: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GTF3C4 MUTATED	4	1	4
GTF3C4 WILD-TYPE	118	50	34

'ACTL6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.18

Table S4216. Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ACTL6A MUTATED	0	6	2	0	0
ACTL6A WILD-TYPE	79	120	25	43	12

'ACTL6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00467 (Fisher's exact test), Q value = 0.032

Table S4217. Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ACTL6A MUTATED	0	5	3	0
ACTL6A WILD-TYPE	71	71	31	63

Figure S1761. Get High-res Image Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACTL6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.39

Table S4218. Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ACTL6A MUTATED	4	1	2
ACTL6A WILD-TYPE	74	85	83

'ACTL6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.26

Table S4219. Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ACTL6A MUTATED	0	2	4	1
ACTL6A WILD-TYPE	33	76	47	86

'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.27

Table S4220. Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ACTL6A MUTATED	3	0	2	1	0
ACTL6A WILD-TYPE	62	59	40	33	57

'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 0.57

Table S4221. Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ACTL6A MUTATED	1	0	0	3	1	0	1
ACTL6A WILD-TYPE	35	21	48	53	38	37	19

'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.36

Table S4222. Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ACTL6A MUTATED	6	1	1
ACTL6A WILD-TYPE	120	95	66

'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.38

Table S4223. Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ACTL6A MUTATED	2	5	1	0
ACTL6A WILD-TYPE	54	100	59	68

'ACTL6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 0.95

Table S4224. Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ACTL6A MUTATED	1	1	2	2	1	1
ACTL6A WILD-TYPE	33	17	57	36	18	42

'ACTL6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S4225. Gene #427: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ACTL6A MUTATED	6	1	1
ACTL6A WILD-TYPE	116	50	37

'C7ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.29

Table S4226. Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C7ORF49 MUTATED	0	5	0	1	1
C7ORF49 WILD-TYPE	79	121	27	42	11

'C7ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00849 (Fisher's exact test), Q value = 0.047

Table S4227. Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C7ORF49 MUTATED	0	6	1	0
C7ORF49 WILD-TYPE	71	70	33	63

Figure S1762. Get High-res Image Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.51

Table S4228. Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C7ORF49 MUTATED	2	0	2
C7ORF49 WILD-TYPE	76	86	83

'C7ORF49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.42

Table S4229. Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C7ORF49 MUTATED	0	0	2	2
C7ORF49 WILD-TYPE	33	78	49	85

'C7ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.61

Table S4230. Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C7ORF49 MUTATED	4	1	1	0	1
C7ORF49 WILD-TYPE	61	58	41	34	56

'C7ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.12

Table S4231. Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C7ORF49 MUTATED	0	0	1	1	2	0	3
C7ORF49 WILD-TYPE	36	21	47	55	37	37	17

Figure S1763. Get High-res Image Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.55

Table S4232. Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C7ORF49 MUTATED	5	1	1
C7ORF49 WILD-TYPE	121	95	66

'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0965 (Fisher's exact test), Q value = 0.2

Table S4233. Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C7ORF49 MUTATED	4	2	0	1
C7ORF49 WILD-TYPE	52	103	60	67

'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.093

Table S4234. Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C7ORF49 MUTATED	0	1	0	3	0	0
C7ORF49 WILD-TYPE	34	17	59	35	19	43

Figure S1764. Get High-res Image Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.71

Table S4235. Gene #428: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C7ORF49 MUTATED	3	0	1
C7ORF49 WILD-TYPE	119	51	37

'BEST3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.9

Table S4236. Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BEST3 MUTATED	3	5	2	1	0
BEST3 WILD-TYPE	76	121	25	42	12

'BEST3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.77

Table S4237. Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BEST3 MUTATED	1	1	1	2
BEST3 WILD-TYPE	70	75	33	61

'BEST3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.4

Table S4238. Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BEST3 MUTATED	4	1	4
BEST3 WILD-TYPE	74	85	81

'BEST3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.26

Table S4239. Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BEST3 MUTATED	0	5	3	1
BEST3 WILD-TYPE	33	73	48	86

'BEST3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 0.68

Table S4240. Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BEST3 MUTATED	1	1	1	2	3
BEST3 WILD-TYPE	64	58	41	32	54

'BEST3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 0.97

Table S4241. Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BEST3 MUTATED	1	0	1	3	2	1	0
BEST3 WILD-TYPE	35	21	47	53	37	36	20

'BEST3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.54

Table S4242. Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BEST3 MUTATED	7	2	2
BEST3 WILD-TYPE	119	94	65

'BEST3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 0.96

Table S4243. Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BEST3 MUTATED	3	4	2	2
BEST3 WILD-TYPE	53	101	58	66

'BEST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.69

Table S4244. Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BEST3 MUTATED	1	1	1	0	0	2
BEST3 WILD-TYPE	33	17	58	38	19	41

'BEST3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S4245. Gene #429: 'BEST3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BEST3 MUTATED	1	2	2
BEST3 WILD-TYPE	121	49	36

'STX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.55

Table S4246. Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STX2 MUTATED	0	4	1	1	0
STX2 WILD-TYPE	79	122	26	42	12

'STX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.078

Table S4247. Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STX2 MUTATED	0	5	1	0
STX2 WILD-TYPE	71	71	33	63

Figure S1765. Get High-res Image Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.12

Table S4248. Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
STX2 MUTATED	4	1	0
STX2 WILD-TYPE	74	85	85

Figure S1766. Get High-res Image Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'STX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0823 (Fisher's exact test), Q value = 0.18

Table S4249. Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
STX2 MUTATED	1	0	3	1
STX2 WILD-TYPE	32	78	48	86

'STX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.77

Table S4250. Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
STX2 MUTATED	2	0	1	1	1
STX2 WILD-TYPE	63	59	41	33	56

'STX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.7

Table S4251. Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
STX2 MUTATED	0	0	0	2	1	1	1
STX2 WILD-TYPE	36	21	48	54	38	36	19

'STX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.74

Table S4252. Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
STX2 MUTATED	3	1	2
STX2 WILD-TYPE	123	95	65

'STX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S4253. Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
STX2 MUTATED	3	2	1	0
STX2 WILD-TYPE	53	103	59	68

'STX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S4254. Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
STX2 MUTATED	2	1	1	1	0	1
STX2 WILD-TYPE	32	17	58	37	19	42

'STX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.71

Table S4255. Gene #430: 'STX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
STX2 MUTATED	3	1	2
STX2 WILD-TYPE	119	50	36

'ARHGEF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.42

Table S4256. Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARHGEF5 MUTATED	0	5	0	0	0
ARHGEF5 WILD-TYPE	79	121	27	43	12

'ARHGEF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.34

Table S4257. Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARHGEF5 MUTATED	0	2	1	0
ARHGEF5 WILD-TYPE	71	74	33	63

'ARHGEF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.81

Table S4258. Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ARHGEF5 MUTATED	2	1	2
ARHGEF5 WILD-TYPE	76	85	83

'ARHGEF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.859 (Fisher's exact test), Q value = 0.91

Table S4259. Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ARHGEF5 MUTATED	1	2	1	1
ARHGEF5 WILD-TYPE	32	76	50	86

'ARHGEF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.78

Table S4260. Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ARHGEF5 MUTATED	2	1	1	1	0
ARHGEF5 WILD-TYPE	63	58	41	33	57

'ARHGEF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.5

Table S4261. Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ARHGEF5 MUTATED	2	0	0	1	1	0	1
ARHGEF5 WILD-TYPE	34	21	48	55	38	37	19

'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.43

Table S4262. Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ARHGEF5 MUTATED	4	1	0
ARHGEF5 WILD-TYPE	122	95	67

'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S4263. Gene #431: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ARHGEF5 MUTATED	3	1	1	0
ARHGEF5 WILD-TYPE	53	104	59	68

'FAM92B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.39

Table S4264. Gene #432: 'FAM92B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM92B MUTATED	1	1	0	0	1
FAM92B WILD-TYPE	78	125	27	43	11

'FAM92B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.77

Table S4265. Gene #432: 'FAM92B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM92B MUTATED	1	1	1	0
FAM92B WILD-TYPE	70	75	33	63

'FAM92B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 0.91

Table S4266. Gene #432: 'FAM92B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FAM92B MUTATED	1	0	1	0	1
FAM92B WILD-TYPE	64	59	41	34	56

'FAM92B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.56

Table S4267. Gene #432: 'FAM92B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FAM92B MUTATED	0	0	0	1	0	1	1
FAM92B WILD-TYPE	36	21	48	55	39	36	19

'FAM92B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.56

Table S4268. Gene #432: 'FAM92B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FAM92B MUTATED	2	0	1
FAM92B WILD-TYPE	124	96	66

'FAM92B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.93

Table S4269. Gene #432: 'FAM92B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FAM92B MUTATED	1	1	0	1
FAM92B WILD-TYPE	55	104	60	67

'BRSK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.46

Table S4270. Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BRSK1 MUTATED	1	8	0	2	0
BRSK1 WILD-TYPE	78	118	27	41	12

'BRSK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.43

Table S4271. Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BRSK1 MUTATED	1	4	3	3
BRSK1 WILD-TYPE	70	72	31	60

'BRSK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.061

Table S4272. Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BRSK1 MUTATED	8	1	2
BRSK1 WILD-TYPE	70	85	83

Figure S1767. Get High-res Image Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BRSK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.082

Table S4273. Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BRSK1 MUTATED	2	2	6	1
BRSK1 WILD-TYPE	31	76	45	86

Figure S1768. Get High-res Image Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BRSK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.25

Table S4274. Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BRSK1 MUTATED	6	2	2	2	0
BRSK1 WILD-TYPE	59	57	40	32	57

'BRSK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.45

Table S4275. Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BRSK1 MUTATED	3	1	1	2	3	0	2
BRSK1 WILD-TYPE	33	20	47	54	36	37	18

'BRSK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.07

Table S4276. Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BRSK1 MUTATED	10	2	0
BRSK1 WILD-TYPE	116	94	67

Figure S1769. Get High-res Image Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRSK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S4277. Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BRSK1 MUTATED	3	7	2	0
BRSK1 WILD-TYPE	53	98	58	68

'BRSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 0.81

Table S4278. Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BRSK1 MUTATED	1	1	4	3	0	1
BRSK1 WILD-TYPE	33	17	55	35	19	42

'BRSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.74

Table S4279. Gene #433: 'BRSK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BRSK1 MUTATED	7	1	2
BRSK1 WILD-TYPE	115	50	36

'KIAA1804 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.732 (Fisher's exact test), Q value = 0.8

Table S4280. Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1804 MUTATED	2	5	0	0	0
KIAA1804 WILD-TYPE	77	121	27	43	12

'KIAA1804 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S4281. Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1804 MUTATED	0	4	0	1
KIAA1804 WILD-TYPE	71	72	34	62

'KIAA1804 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 0.87

Table S4282. Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA1804 MUTATED	3	2	3
KIAA1804 WILD-TYPE	75	84	82

'KIAA1804 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.65

Table S4283. Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA1804 MUTATED	0	3	3	2
KIAA1804 WILD-TYPE	33	75	48	85

'KIAA1804 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4284. Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA1804 MUTATED	2	2	1	1	2
KIAA1804 WILD-TYPE	63	57	41	33	55

'KIAA1804 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 0.96

Table S4285. Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA1804 MUTATED	1	0	2	1	2	1	1
KIAA1804 WILD-TYPE	35	21	46	55	37	36	19

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.091

Table S4286. Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA1804 MUTATED	7	0	1
KIAA1804 WILD-TYPE	119	96	66

Figure S1770. Get High-res Image Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 0.12

Table S4287. Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA1804 MUTATED	4	1	0	3
KIAA1804 WILD-TYPE	52	104	60	65

Figure S1771. Get High-res Image Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.41

Table S4288. Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA1804 MUTATED	2	1	2	0	0	0
KIAA1804 WILD-TYPE	32	17	57	38	19	43

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.57

Table S4289. Gene #434: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA1804 MUTATED	4	0	1
KIAA1804 WILD-TYPE	118	51	37

'ZNF711 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.32

Table S4290. Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF711 MUTATED	1	9	0	3	0
ZNF711 WILD-TYPE	78	117	27	40	12

'ZNF711 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.11

Table S4291. Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF711 MUTATED	1	6	2	0
ZNF711 WILD-TYPE	70	70	32	63

Figure S1772. Get High-res Image Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF711 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.068

Table S4292. Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZNF711 MUTATED	8	2	1
ZNF711 WILD-TYPE	70	84	84

Figure S1773. Get High-res Image Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF711 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0697 (Fisher's exact test), Q value = 0.17

Table S4293. Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZNF711 MUTATED	1	2	6	2
ZNF711 WILD-TYPE	32	76	45	85

'ZNF711 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 0.82

Table S4294. Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF711 MUTATED	4	1	1	1	3
ZNF711 WILD-TYPE	61	58	41	33	54

'ZNF711 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S4295. Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF711 MUTATED	1	1	0	1	2	2	3
ZNF711 WILD-TYPE	35	20	48	55	37	35	17

'ZNF711 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 0.12

Table S4296. Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF711 MUTATED	10	1	2
ZNF711 WILD-TYPE	116	95	65

Figure S1774. Get High-res Image Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF711 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.065

Table S4297. Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF711 MUTATED	6	6	1	0
ZNF711 WILD-TYPE	50	99	59	68

Figure S1775. Get High-res Image Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF711 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S4298. Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZNF711 MUTATED	3	0	1	3	0	0
ZNF711 WILD-TYPE	31	18	58	35	19	43

'ZNF711 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 0.92

Table S4299. Gene #435: 'ZNF711 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZNF711 MUTATED	5	1	1
ZNF711 WILD-TYPE	117	50	37

'HCRTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.56

Table S4300. Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HCRTR2 MUTATED	1	6	1	0	0
HCRTR2 WILD-TYPE	78	120	26	43	12

'HCRTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.33

Table S4301. Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HCRTR2 MUTATED	1	2	3	1
HCRTR2 WILD-TYPE	70	74	31	62

'HCRTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.39

Table S4302. Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HCRTR2 MUTATED	4	1	2
HCRTR2 WILD-TYPE	74	85	83

'HCRTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.65

Table S4303. Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HCRTR2 MUTATED	0	2	3	2
HCRTR2 WILD-TYPE	33	76	48	85

'HCRTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S4304. Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HCRTR2 MUTATED	6	1	1	0	1
HCRTR2 WILD-TYPE	59	58	41	34	56

'HCRTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.036 (Fisher's exact test), Q value = 0.11

Table S4305. Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HCRTR2 MUTATED	4	0	0	1	3	0	1
HCRTR2 WILD-TYPE	32	21	48	55	36	37	19

Figure S1776. Get High-res Image Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.6

Table S4306. Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HCRTR2 MUTATED	6	2	1
HCRTR2 WILD-TYPE	120	94	66

'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.69

Table S4307. Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HCRTR2 MUTATED	2	5	1	1
HCRTR2 WILD-TYPE	54	100	59	67

'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.42

Table S4308. Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HCRTR2 MUTATED	1	2	2	1	0	0
HCRTR2 WILD-TYPE	33	16	57	37	19	43

'HCRTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0912 (Fisher's exact test), Q value = 0.19

Table S4309. Gene #436: 'HCRTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HCRTR2 MUTATED	3	0	3
HCRTR2 WILD-TYPE	119	51	35

'OR51A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.83

Table S4310. Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR51A7 MUTATED	2	3	1	0	0
OR51A7 WILD-TYPE	77	123	26	43	12

'OR51A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.62

Table S4311. Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR51A7 MUTATED	1	1	1	3
OR51A7 WILD-TYPE	70	75	33	60

'OR51A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.31

Table S4312. Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OR51A7 MUTATED	0	4	2
OR51A7 WILD-TYPE	78	82	83

'OR51A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 0.97

Table S4313. Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OR51A7 MUTATED	0	2	1	3
OR51A7 WILD-TYPE	33	76	50	84

'OR51A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.61

Table S4314. Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OR51A7 MUTATED	1	1	0	2	2
OR51A7 WILD-TYPE	64	58	42	32	55

'OR51A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.77

Table S4315. Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OR51A7 MUTATED	2	1	1	1	0	1	0
OR51A7 WILD-TYPE	34	20	47	55	39	36	20

'OR51A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4316. Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OR51A7 MUTATED	3	2	1
OR51A7 WILD-TYPE	123	94	66

'OR51A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.945 (Fisher's exact test), Q value = 0.98

Table S4317. Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OR51A7 MUTATED	1	2	1	2
OR51A7 WILD-TYPE	55	103	59	66

'OR51A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 0.97

Table S4318. Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OR51A7 MUTATED	1	1	2	1	0	1
OR51A7 WILD-TYPE	33	17	57	37	19	42

'OR51A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 0.79

Table S4319. Gene #437: 'OR51A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OR51A7 MUTATED	4	2	0
OR51A7 WILD-TYPE	118	49	38

'C2ORF42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S4320. Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C2ORF42 MUTATED	1	9	0	2	1
C2ORF42 WILD-TYPE	78	117	27	41	11

'C2ORF42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0957 (Fisher's exact test), Q value = 0.2

Table S4321. Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C2ORF42 MUTATED	2	6	1	0
C2ORF42 WILD-TYPE	69	70	33	63

'C2ORF42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0531 (Fisher's exact test), Q value = 0.14

Table S4322. Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C2ORF42 MUTATED	7	1	3
C2ORF42 WILD-TYPE	71	85	82

'C2ORF42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0699 (Fisher's exact test), Q value = 0.17

Table S4323. Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C2ORF42 MUTATED	1	2	6	2
C2ORF42 WILD-TYPE	32	76	45	85

'C2ORF42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.25

Table S4324. Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C2ORF42 MUTATED	7	1	3	2	1
C2ORF42 WILD-TYPE	58	58	39	32	56

'C2ORF42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00164 (Fisher's exact test), Q value = 0.018

Table S4325. Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C2ORF42 MUTATED	5	0	0	4	1	0	4
C2ORF42 WILD-TYPE	31	21	48	52	38	37	16

Figure S1777. Get High-res Image Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.061

Table S4326. Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C2ORF42 MUTATED	11	3	0
C2ORF42 WILD-TYPE	115	93	67

Figure S1778. Get High-res Image Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 0.18

Table S4327. Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C2ORF42 MUTATED	6	6	1	1
C2ORF42 WILD-TYPE	50	99	59	67

'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.45

Table S4328. Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C2ORF42 MUTATED	1	0	1	4	0	2
C2ORF42 WILD-TYPE	33	18	58	34	19	41

'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.77

Table S4329. Gene #438: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C2ORF42 MUTATED	5	1	2
C2ORF42 WILD-TYPE	117	50	36

'KCTD21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.46

Table S4330. Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCTD21 MUTATED	0	5	1	1	0
KCTD21 WILD-TYPE	79	121	26	42	12

'KCTD21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.97

Table S4331. Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCTD21 MUTATED	1	2	1	1
KCTD21 WILD-TYPE	70	74	33	62

'KCTD21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S4332. Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KCTD21 MUTATED	5	1	1
KCTD21 WILD-TYPE	73	85	84

'KCTD21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.21

Table S4333. Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KCTD21 MUTATED	1	1	4	1
KCTD21 WILD-TYPE	32	77	47	86

'KCTD21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0899 (Fisher's exact test), Q value = 0.19

Table S4334. Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KCTD21 MUTATED	5	1	1	0	0
KCTD21 WILD-TYPE	60	58	41	34	57

'KCTD21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.36

Table S4335. Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KCTD21 MUTATED	3	1	0	2	1	0	0
KCTD21 WILD-TYPE	33	20	48	54	38	37	20

'KCTD21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00961 (Fisher's exact test), Q value = 0.05

Table S4336. Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KCTD21 MUTATED	7	0	0
KCTD21 WILD-TYPE	119	96	67

Figure S1779. Get High-res Image Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KCTD21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.09 (Fisher's exact test), Q value = 0.19

Table S4337. Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KCTD21 MUTATED	3	4	0	0
KCTD21 WILD-TYPE	53	101	60	68

'KCTD21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.15

Table S4338. Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KCTD21 MUTATED	0	2	3	0	0	0
KCTD21 WILD-TYPE	34	16	56	38	19	43

'KCTD21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.41

Table S4339. Gene #439: 'KCTD21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KCTD21 MUTATED	3	0	2
KCTD21 WILD-TYPE	119	51	36

'SEZ6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.16

Table S4340. Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SEZ6 MUTATED	0	9	0	1	0
SEZ6 WILD-TYPE	79	117	27	42	12

'SEZ6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00237 (Fisher's exact test), Q value = 0.022

Table S4341. Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SEZ6 MUTATED	0	7	2	0
SEZ6 WILD-TYPE	71	69	32	63

Figure S1780. Get High-res Image Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SEZ6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.44

Table S4342. Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SEZ6 MUTATED	4	1	3
SEZ6 WILD-TYPE	74	85	82

'SEZ6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00381 (Fisher's exact test), Q value = 0.029

Table S4343. Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SEZ6 MUTATED	3	1	4	0
SEZ6 WILD-TYPE	30	77	47	87

Figure S1781. Get High-res Image Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SEZ6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.21

Table S4344. Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SEZ6 MUTATED	5	2	0	1	0
SEZ6 WILD-TYPE	60	57	42	33	57

'SEZ6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00286 (Fisher's exact test), Q value = 0.025

Table S4345. Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SEZ6 MUTATED	2	0	0	1	1	0	4
SEZ6 WILD-TYPE	34	21	48	55	38	37	16

Figure S1782. Get High-res Image Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SEZ6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0564 (Fisher's exact test), Q value = 0.15

Table S4346. Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SEZ6 MUTATED	8	2	0
SEZ6 WILD-TYPE	118	94	67

'SEZ6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0535 (Fisher's exact test), Q value = 0.14

Table S4347. Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SEZ6 MUTATED	5	3	2	0
SEZ6 WILD-TYPE	51	102	58	68

'SEZ6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S4348. Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SEZ6 MUTATED	1	1	3	1	0	2
SEZ6 WILD-TYPE	33	17	56	37	19	41

'SEZ6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.055

Table S4349. Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SEZ6 MUTATED	2	1	5
SEZ6 WILD-TYPE	120	50	33

Figure S1783. Get High-res Image Gene #440: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C7ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.67

Table S4350. Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C7ORF58 MUTATED	2	7	2	2	1
C7ORF58 WILD-TYPE	77	119	25	41	11

'C7ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00298 (Fisher's exact test), Q value = 0.026

Table S4351. Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C7ORF58 MUTATED	2	10	1	0
C7ORF58 WILD-TYPE	69	66	33	63

Figure S1784. Get High-res Image Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.33

Table S4352. Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C7ORF58 MUTATED	7	3	3
C7ORF58 WILD-TYPE	71	83	82

'C7ORF58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0277 (Fisher's exact test), Q value = 0.094

Table S4353. Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C7ORF58 MUTATED	0	2	7	4
C7ORF58 WILD-TYPE	33	76	44	83

Figure S1785. Get High-res Image Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0501 (Fisher's exact test), Q value = 0.13

Table S4354. Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C7ORF58 MUTATED	8	1	2	0	2
C7ORF58 WILD-TYPE	57	58	40	34	55

'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0527 (Fisher's exact test), Q value = 0.14

Table S4355. Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C7ORF58 MUTATED	0	1	1	2	5	1	3
C7ORF58 WILD-TYPE	36	20	47	54	34	36	17

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.33

Table S4356. Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C7ORF58 MUTATED	10	3	2
C7ORF58 WILD-TYPE	116	93	65

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S4357. Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C7ORF58 MUTATED	7	4	2	2
C7ORF58 WILD-TYPE	49	101	58	66

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 0.81

Table S4358. Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C7ORF58 MUTATED	2	2	3	3	1	1
C7ORF58 WILD-TYPE	32	16	56	35	18	42

'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.22

Table S4359. Gene #441: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C7ORF58 MUTATED	5	2	5
C7ORF58 WILD-TYPE	117	49	33

'STK38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.52

Table S4360. Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STK38 MUTATED	0	5	0	1	0
STK38 WILD-TYPE	79	121	27	42	12

'STK38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S4361. Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STK38 MUTATED	0	4	0	1
STK38 WILD-TYPE	71	72	34	62

'STK38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.29

Table S4362. Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
STK38 MUTATED	3	0	3
STK38 WILD-TYPE	75	86	82

'STK38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00403 (Fisher's exact test), Q value = 0.03

Table S4363. Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
STK38 MUTATED	0	1	5	0
STK38 WILD-TYPE	33	77	46	87

Figure S1786. Get High-res Image Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STK38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.09

Table S4364. Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
STK38 MUTATED	4	0	0	2	0
STK38 WILD-TYPE	61	59	42	32	57

Figure S1787. Get High-res Image Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STK38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.26

Table S4365. Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
STK38 MUTATED	1	0	0	1	2	0	2
STK38 WILD-TYPE	35	21	48	55	37	37	18

'STK38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.077

Table S4366. Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
STK38 MUTATED	6	0	0
STK38 WILD-TYPE	120	96	67

Figure S1788. Get High-res Image Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'STK38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.095

Table S4367. Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
STK38 MUTATED	4	2	0	0
STK38 WILD-TYPE	52	103	60	68

Figure S1789. Get High-res Image Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'STK38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.77

Table S4368. Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
STK38 MUTATED	1	1	2	1	0	0
STK38 WILD-TYPE	33	17	57	37	19	43

'STK38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.41

Table S4369. Gene #442: 'STK38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
STK38 MUTATED	3	0	2
STK38 WILD-TYPE	119	51	36

'PTPN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S4370. Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PTPN4 MUTATED	0	6	0	1	1
PTPN4 WILD-TYPE	79	120	27	42	11

'PTPN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.15

Table S4371. Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PTPN4 MUTATED	0	4	1	0
PTPN4 WILD-TYPE	71	72	33	63

'PTPN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S4372. Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PTPN4 MUTATED	5	1	1
PTPN4 WILD-TYPE	73	85	84

'PTPN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.29

Table S4373. Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PTPN4 MUTATED	0	1	4	2
PTPN4 WILD-TYPE	33	77	47	85

'PTPN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.22

Table S4374. Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PTPN4 MUTATED	4	1	0	2	0
PTPN4 WILD-TYPE	61	58	42	32	57

'PTPN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0283 (Fisher's exact test), Q value = 0.095

Table S4375. Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PTPN4 MUTATED	1	0	0	1	2	0	3
PTPN4 WILD-TYPE	35	21	48	55	37	37	17

Figure S1790. Get High-res Image Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTPN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.09

Table S4376. Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PTPN4 MUTATED	8	1	0
PTPN4 WILD-TYPE	118	95	67

Figure S1791. Get High-res Image Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTPN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.061

Table S4377. Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PTPN4 MUTATED	5	4	0	0
PTPN4 WILD-TYPE	51	101	60	68

Figure S1792. Get High-res Image Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTPN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.12

Table S4378. Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PTPN4 MUTATED	3	0	0	2	0	0
PTPN4 WILD-TYPE	31	18	59	36	19	43

Figure S1793. Get High-res Image Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTPN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.41

Table S4379. Gene #443: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PTPN4 MUTATED	3	0	2
PTPN4 WILD-TYPE	119	51	36

'CTSD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.59

Table S4380. Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CTSD MUTATED	1	6	0	0	0
CTSD WILD-TYPE	78	120	27	43	12

'CTSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.36

Table S4381. Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CTSD MUTATED	1	5	0	1
CTSD WILD-TYPE	70	71	34	62

'CTSD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.41

Table S4382. Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CTSD MUTATED	4	1	1
CTSD WILD-TYPE	74	85	84

'CTSD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.4

Table S4383. Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CTSD MUTATED	1	1	3	1
CTSD WILD-TYPE	32	77	48	86

'CTSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.24

Table S4384. Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CTSD MUTATED	5	1	0	0	1
CTSD WILD-TYPE	60	58	42	34	56

'CTSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.32

Table S4385. Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CTSD MUTATED	1	0	0	2	2	0	2
CTSD WILD-TYPE	35	21	48	54	37	37	18

'CTSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.7

Table S4386. Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CTSD MUTATED	4	1	2
CTSD WILD-TYPE	122	95	65

'CTSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00187 (Fisher's exact test), Q value = 0.019

Table S4387. Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CTSD MUTATED	5	0	0	2
CTSD WILD-TYPE	51	105	60	66

Figure S1794. Get High-res Image Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CTSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.59

Table S4388. Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CTSD MUTATED	1	0	4	1	1	0
CTSD WILD-TYPE	33	18	55	37	18	43

'CTSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0366 (Fisher's exact test), Q value = 0.11

Table S4389. Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CTSD MUTATED	3	0	4
CTSD WILD-TYPE	119	51	34

Figure S1795. Get High-res Image Gene #444: 'CTSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EOMES MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 0.15

Table S4390. Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EOMES MUTATED	0	8	0	0	0
EOMES WILD-TYPE	79	118	27	43	12

'EOMES MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.13

Table S4391. Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EOMES MUTATED	0	3	2	0
EOMES WILD-TYPE	71	73	32	63

Figure S1796. Get High-res Image Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EOMES MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 0.85

Table S4392. Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EOMES MUTATED	3	2	2
EOMES WILD-TYPE	75	84	83

'EOMES MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 0.95

Table S4393. Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EOMES MUTATED	1	2	2	2
EOMES WILD-TYPE	32	76	49	85

'EOMES MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.47

Table S4394. Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EOMES MUTATED	3	3	1	0	0
EOMES WILD-TYPE	62	56	41	34	57

'EOMES MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.21

Table S4395. Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EOMES MUTATED	3	1	0	2	0	0	1
EOMES WILD-TYPE	33	20	48	54	39	37	19

'EOMES MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.45

Table S4396. Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EOMES MUTATED	5	3	0
EOMES WILD-TYPE	121	93	67

'EOMES MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.3

Table S4397. Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EOMES MUTATED	3	1	3	1
EOMES WILD-TYPE	53	104	57	67

'EOMES MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 0.97

Table S4398. Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EOMES MUTATED	1	0	1	2	0	1
EOMES WILD-TYPE	33	18	58	36	19	42

'EOMES MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S4399. Gene #445: 'EOMES MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EOMES MUTATED	1	2	2
EOMES WILD-TYPE	121	49	36

'AVPR1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.22

Table S4400. Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AVPR1A MUTATED	1	9	2	0	0
AVPR1A WILD-TYPE	78	117	25	43	12

'AVPR1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.35

Table S4401. Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AVPR1A MUTATED	1	6	2	2
AVPR1A WILD-TYPE	70	70	32	61

'AVPR1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0032

Table S4402. Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
AVPR1A MUTATED	10	0	2
AVPR1A WILD-TYPE	68	86	83

Figure S1797. Get High-res Image Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'AVPR1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0362 (Fisher's exact test), Q value = 0.11

Table S4403. Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
AVPR1A MUTATED	2	3	6	1
AVPR1A WILD-TYPE	31	75	45	86

Figure S1798. Get High-res Image Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AVPR1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.15

Table S4404. Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
AVPR1A MUTATED	6	0	1	1	1
AVPR1A WILD-TYPE	59	59	41	33	56

'AVPR1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S4405. Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
AVPR1A MUTATED	1	0	0	3	3	0	2
AVPR1A WILD-TYPE	35	21	48	53	36	37	18

'AVPR1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S4406. Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
AVPR1A MUTATED	9	2	1
AVPR1A WILD-TYPE	117	94	66

'AVPR1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0653 (Fisher's exact test), Q value = 0.16

Table S4407. Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
AVPR1A MUTATED	6	4	1	1
AVPR1A WILD-TYPE	50	101	59	67

'AVPR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 0.88

Table S4408. Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
AVPR1A MUTATED	1	1	5	2	1	1
AVPR1A WILD-TYPE	33	17	54	36	18	42

'AVPR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S4409. Gene #446: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
AVPR1A MUTATED	7	1	3
AVPR1A WILD-TYPE	115	50	35

'DDX43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.3

Table S4410. Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DDX43 MUTATED	1	7	1	0	1
DDX43 WILD-TYPE	78	119	26	43	11

'DDX43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.48

Table S4411. Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DDX43 MUTATED	3	3	1	0
DDX43 WILD-TYPE	68	73	33	63

'DDX43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.21

Table S4412. Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DDX43 MUTATED	4	3	0
DDX43 WILD-TYPE	74	83	85

'DDX43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.56

Table S4413. Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DDX43 MUTATED	1	1	3	2
DDX43 WILD-TYPE	32	77	48	85

'DDX43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 0.87

Table S4414. Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DDX43 MUTATED	2	1	2	2	2
DDX43 WILD-TYPE	63	58	40	32	55

'DDX43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 0.6

Table S4415. Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DDX43 MUTATED	2	1	0	1	2	2	1
DDX43 WILD-TYPE	34	20	48	55	37	35	19

'DDX43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.33

Table S4416. Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DDX43 MUTATED	7	1	2
DDX43 WILD-TYPE	119	95	65

'DDX43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 0.84

Table S4417. Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DDX43 MUTATED	3	4	1	2
DDX43 WILD-TYPE	53	101	59	66

'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.55

Table S4418. Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DDX43 MUTATED	1	1	1	2	1	0
DDX43 WILD-TYPE	33	17	58	36	18	43

'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0915 (Fisher's exact test), Q value = 0.2

Table S4419. Gene #447: 'DDX43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DDX43 MUTATED	3	0	3
DDX43 WILD-TYPE	119	51	35

'OR4K5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S4420. Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR4K5 MUTATED	2	7	0	2	0
OR4K5 WILD-TYPE	77	119	27	41	12

'OR4K5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.49

Table S4421. Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR4K5 MUTATED	3	6	1	1
OR4K5 WILD-TYPE	68	70	33	62

'OR4K5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S4422. Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OR4K5 MUTATED	10	0	1
OR4K5 WILD-TYPE	68	86	84

Figure S1799. Get High-res Image Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OR4K5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00881 (Fisher's exact test), Q value = 0.048

Table S4423. Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OR4K5 MUTATED	1	1	7	2
OR4K5 WILD-TYPE	32	77	44	85

Figure S1800. Get High-res Image Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OR4K5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.35

Table S4424. Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OR4K5 MUTATED	5	0	2	1	2
OR4K5 WILD-TYPE	60	59	40	33	55

'OR4K5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S4425. Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OR4K5 MUTATED	1	1	0	3	4	0	1
OR4K5 WILD-TYPE	35	20	48	53	35	37	19

'OR4K5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.092

Table S4426. Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OR4K5 MUTATED	10	1	1
OR4K5 WILD-TYPE	116	95	66

Figure S1801. Get High-res Image Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OR4K5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00779 (Fisher's exact test), Q value = 0.045

Table S4427. Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OR4K5 MUTATED	7	3	0	2
OR4K5 WILD-TYPE	49	102	60	66

Figure S1802. Get High-res Image Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OR4K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 0.92

Table S4428. Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OR4K5 MUTATED	2	1	3	1	0	1
OR4K5 WILD-TYPE	32	17	56	37	19	42

'OR4K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00656 (Fisher's exact test), Q value = 0.04

Table S4429. Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OR4K5 MUTATED	3	0	5
OR4K5 WILD-TYPE	119	51	33

Figure S1803. Get High-res Image Gene #448: 'OR4K5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPR124 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S4430. Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPR124 MUTATED	1	10	1	1	0
GPR124 WILD-TYPE	78	116	26	42	12

'GPR124 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.1

Table S4431. Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPR124 MUTATED	0	7	1	2
GPR124 WILD-TYPE	71	69	33	61

Figure S1804. Get High-res Image Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPR124 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.075

Table S4432. Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GPR124 MUTATED	9	2	2
GPR124 WILD-TYPE	69	84	83

Figure S1805. Get High-res Image Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPR124 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.011

Table S4433. Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GPR124 MUTATED	4	1	7	1
GPR124 WILD-TYPE	29	77	44	86

Figure S1806. Get High-res Image Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR124 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00662 (Fisher's exact test), Q value = 0.04

Table S4434. Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GPR124 MUTATED	5	0	1	5	1
GPR124 WILD-TYPE	60	59	41	29	56

Figure S1807. Get High-res Image Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPR124 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00396 (Fisher's exact test), Q value = 0.03

Table S4435. Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GPR124 MUTATED	4	0	0	1	4	0	3
GPR124 WILD-TYPE	32	21	48	55	35	37	17

Figure S1808. Get High-res Image Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR124 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.011

Table S4436. Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GPR124 MUTATED	12	0	1
GPR124 WILD-TYPE	114	96	66

Figure S1809. Get High-res Image Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR124 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00093 (Fisher's exact test), Q value = 0.012

Table S4437. Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GPR124 MUTATED	7	6	0	0
GPR124 WILD-TYPE	49	99	60	68

Figure S1810. Get High-res Image Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPR124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0814 (Fisher's exact test), Q value = 0.18

Table S4438. Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GPR124 MUTATED	0	2	5	2	0	0
GPR124 WILD-TYPE	34	16	54	36	19	43

'GPR124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 0.13

Table S4439. Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GPR124 MUTATED	5	0	4
GPR124 WILD-TYPE	117	51	34

Figure S1811. Get High-res Image Gene #449: 'GPR124 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.57

Table S4440. Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAAH MUTATED	0	4	0	0	0
FAAH WILD-TYPE	79	122	27	43	12

'FAAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.64

Table S4441. Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAAH MUTATED	0	1	1	1
FAAH WILD-TYPE	71	75	33	62

'FAAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S4442. Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FAAH MUTATED	1	3	0
FAAH WILD-TYPE	77	83	85

'FAAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.52

Table S4443. Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FAAH MUTATED	1	0	1	2
FAAH WILD-TYPE	32	78	50	85

'FAAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.64

Table S4444. Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FAAH MUTATED	1	2	0	0	0
FAAH WILD-TYPE	64	57	42	34	57

'FAAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0482 (Fisher's exact test), Q value = 0.13

Table S4445. Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FAAH MUTATED	2	0	0	0	0	0	1
FAAH WILD-TYPE	34	21	48	56	39	37	19

Figure S1812. Get High-res Image Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.76

Table S4446. Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FAAH MUTATED	2	2	0
FAAH WILD-TYPE	124	94	67

'FAAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4447. Gene #450: 'FAAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FAAH MUTATED	1	1	1	1
FAAH WILD-TYPE	55	104	59	67

'EYA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.47

Table S4448. Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EYA4 MUTATED	4	9	1	0	1
EYA4 WILD-TYPE	75	117	26	43	11

'EYA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.87

Table S4449. Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EYA4 MUTATED	4	5	1	2
EYA4 WILD-TYPE	67	71	33	61

'EYA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00847 (Fisher's exact test), Q value = 0.047

Table S4450. Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EYA4 MUTATED	7	0	5
EYA4 WILD-TYPE	71	86	80

Figure S1813. Get High-res Image Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EYA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.5

Table S4451. Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EYA4 MUTATED	1	5	4	2
EYA4 WILD-TYPE	32	73	47	85

'EYA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.56

Table S4452. Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EYA4 MUTATED	6	1	2	1	3
EYA4 WILD-TYPE	59	58	40	33	54

'EYA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 0.88

Table S4453. Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EYA4 MUTATED	2	0	1	4	3	2	1
EYA4 WILD-TYPE	34	21	47	52	36	35	19

'EYA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.33

Table S4454. Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EYA4 MUTATED	10	3	2
EYA4 WILD-TYPE	116	93	65

'EYA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.33

Table S4455. Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EYA4 MUTATED	6	5	1	3
EYA4 WILD-TYPE	50	100	59	65

'EYA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 0.91

Table S4456. Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EYA4 MUTATED	1	0	4	1	0	2
EYA4 WILD-TYPE	33	18	55	37	19	41

'EYA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.77

Table S4457. Gene #451: 'EYA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EYA4 MUTATED	5	1	2
EYA4 WILD-TYPE	117	50	36

'ZNF701 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.37

Table S4458. Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF701 MUTATED	0	6	1	1	0
ZNF701 WILD-TYPE	79	120	26	42	12

'ZNF701 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.951 (Fisher's exact test), Q value = 0.98

Table S4459. Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF701 MUTATED	2	3	1	1
ZNF701 WILD-TYPE	69	73	33	62

'ZNF701 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.44

Table S4460. Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZNF701 MUTATED	4	1	3
ZNF701 WILD-TYPE	74	85	82

'ZNF701 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 0.65

Table S4461. Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZNF701 MUTATED	0	3	3	2
ZNF701 WILD-TYPE	33	75	48	85

'ZNF701 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.72

Table S4462. Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF701 MUTATED	3	2	0	0	1
ZNF701 WILD-TYPE	62	57	42	34	56

'ZNF701 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.46

Table S4463. Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF701 MUTATED	3	0	0	1	1	1	0
ZNF701 WILD-TYPE	33	21	48	55	38	36	20

'ZNF701 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.79

Table S4464. Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF701 MUTATED	5	2	1
ZNF701 WILD-TYPE	121	94	66

'ZNF701 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.37

Table S4465. Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF701 MUTATED	3	1	1	3
ZNF701 WILD-TYPE	53	104	59	65

'ZNF701 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.71

Table S4466. Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZNF701 MUTATED	2	0	3	0	1	1
ZNF701 WILD-TYPE	32	18	56	38	18	42

'ZNF701 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 0.92

Table S4467. Gene #452: 'ZNF701 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZNF701 MUTATED	5	1	1
ZNF701 WILD-TYPE	117	50	37

'OR2J3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.67

Table S4468. Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR2J3 MUTATED	1	5	0	0	0
OR2J3 WILD-TYPE	78	121	27	43	12

'OR2J3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.061

Table S4469. Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR2J3 MUTATED	0	5	0	0
OR2J3 WILD-TYPE	71	71	34	63

Figure S1814. Get High-res Image Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OR2J3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4470. Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OR2J3 MUTATED	2	2	2
OR2J3 WILD-TYPE	76	84	83

'OR2J3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S4471. Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OR2J3 MUTATED	1	0	3	2
OR2J3 WILD-TYPE	32	78	48	85

'OR2J3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.69

Table S4472. Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OR2J3 MUTATED	2	1	0	2	1
OR2J3 WILD-TYPE	63	58	42	32	56

'OR2J3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 0.98

Table S4473. Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OR2J3 MUTATED	0	0	2	2	1	1	0
OR2J3 WILD-TYPE	36	21	46	54	38	36	20

'OR2J3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4474. Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OR2J3 MUTATED	3	2	1
OR2J3 WILD-TYPE	123	94	66

'OR2J3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.43

Table S4475. Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OR2J3 MUTATED	3	1	1	1
OR2J3 WILD-TYPE	53	104	59	67

'OR2J3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.76

Table S4476. Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OR2J3 MUTATED	1	1	2	1	0	0
OR2J3 WILD-TYPE	33	17	57	37	19	43

'OR2J3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.41

Table S4477. Gene #453: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OR2J3 MUTATED	3	0	2
OR2J3 WILD-TYPE	119	51	36

'MPRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.13

Table S4478. Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MPRIP MUTATED	1	11	2	0	0
MPRIP WILD-TYPE	78	115	25	43	12

Figure S1815. Get High-res Image Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MPRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00483 (Fisher's exact test), Q value = 0.033

Table S4479. Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MPRIP MUTATED	0	8	0	2
MPRIP WILD-TYPE	71	68	34	61

Figure S1816. Get High-res Image Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MPRIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00912 (Fisher's exact test), Q value = 0.049

Table S4480. Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MPRIP MUTATED	7	0	6
MPRIP WILD-TYPE	71	86	79

Figure S1817. Get High-res Image Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MPRIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0213 (Fisher's exact test), Q value = 0.08

Table S4481. Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MPRIP MUTATED	0	4	7	2
MPRIP WILD-TYPE	33	74	44	85

Figure S1818. Get High-res Image Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.54

Table S4482. Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MPRIP MUTATED	4	1	3	2	1
MPRIP WILD-TYPE	61	58	39	32	56

'MPRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.41

Table S4483. Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MPRIP MUTATED	2	0	0	3	4	1	1
MPRIP WILD-TYPE	34	21	48	53	35	36	19

'MPRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.061

Table S4484. Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MPRIP MUTATED	11	3	0
MPRIP WILD-TYPE	115	93	67

Figure S1819. Get High-res Image Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MPRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.0088

Table S4485. Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MPRIP MUTATED	9	3	0	2
MPRIP WILD-TYPE	47	102	60	66

Figure S1820. Get High-res Image Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 0.75

Table S4486. Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MPRIP MUTATED	2	2	3	1	1	1
MPRIP WILD-TYPE	32	16	56	37	18	42

'MPRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.13

Table S4487. Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MPRIP MUTATED	4	1	5
MPRIP WILD-TYPE	118	50	33

Figure S1821. Get High-res Image Gene #454: 'MPRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SYNJ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.14

Table S4488. Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SYNJ2 MUTATED	1	13	1	1	0
SYNJ2 WILD-TYPE	78	113	26	42	12

'SYNJ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.28

Table S4489. Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SYNJ2 MUTATED	2	8	1	2
SYNJ2 WILD-TYPE	69	68	33	61

'SYNJ2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.61

Table S4490. Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SYNJ2 MUTATED	6	3	5
SYNJ2 WILD-TYPE	72	83	80

'SYNJ2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.058

Table S4491. Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SYNJ2 MUTATED	4	3	6	1
SYNJ2 WILD-TYPE	29	75	45	86

Figure S1822. Get High-res Image Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SYNJ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.091

Table S4492. Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SYNJ2 MUTATED	6	1	4	3	0
SYNJ2 WILD-TYPE	59	58	38	31	57

Figure S1823. Get High-res Image Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SYNJ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.059

Table S4493. Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SYNJ2 MUTATED	2	0	1	4	2	0	5
SYNJ2 WILD-TYPE	34	21	47	52	37	37	15

Figure S1824. Get High-res Image Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SYNJ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00837 (Fisher's exact test), Q value = 0.047

Table S4494. Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SYNJ2 MUTATED	13	2	1
SYNJ2 WILD-TYPE	113	94	66

Figure S1825. Get High-res Image Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SYNJ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.16

Table S4495. Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SYNJ2 MUTATED	7	6	2	1
SYNJ2 WILD-TYPE	49	99	58	67

'SYNJ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S4496. Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SYNJ2 MUTATED	1	2	7	1	0	1
SYNJ2 WILD-TYPE	33	16	52	37	19	42

'SYNJ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.073

Table S4497. Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SYNJ2 MUTATED	4	2	6
SYNJ2 WILD-TYPE	118	49	32

Figure S1826. Get High-res Image Gene #455: 'SYNJ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA1324L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S4498. Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1324L MUTATED	4	14	1	2	0
KIAA1324L WILD-TYPE	75	112	26	41	12

'KIAA1324L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.007

Table S4499. Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1324L MUTATED	4	12	0	0
KIAA1324L WILD-TYPE	67	64	34	63

Figure S1827. Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1324L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.052

Table S4500. Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA1324L MUTATED	12	2	7
KIAA1324L WILD-TYPE	66	84	78

Figure S1828. Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA1324L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00336 (Fisher's exact test), Q value = 0.027

Table S4501. Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA1324L MUTATED	3	4	11	3
KIAA1324L WILD-TYPE	30	74	40	84

Figure S1829. Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1324L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.073

Table S4502. Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA1324L MUTATED	5	2	3	7	1
KIAA1324L WILD-TYPE	60	57	39	27	56

Figure S1830. Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1324L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00043 (Fisher's exact test), Q value = 0.0075

Table S4503. Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA1324L MUTATED	1	0	1	5	10	0	1
KIAA1324L WILD-TYPE	35	21	47	51	29	37	19

Figure S1831. Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1324L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.095

Table S4504. Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA1324L MUTATED	14	2	5
KIAA1324L WILD-TYPE	112	94	62

Figure S1832. Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1324L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0027

Table S4505. Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA1324L MUTATED	13	3	2	3
KIAA1324L WILD-TYPE	43	102	58	65

Figure S1833. Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1324L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.28

Table S4506. Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA1324L MUTATED	5	2	5	1	0	1
KIAA1324L WILD-TYPE	29	16	54	37	19	42

'KIAA1324L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00114 (Fisher's exact test), Q value = 0.014

Table S4507. Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA1324L MUTATED	5	1	8
KIAA1324L WILD-TYPE	117	50	30

Figure S1834. Get High-res Image Gene #456: 'KIAA1324L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.27

Table S4508. Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPR141 MUTATED	0	7	0	2	0
GPR141 WILD-TYPE	79	119	27	41	12

'GPR141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.15

Table S4509. Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPR141 MUTATED	0	5	2	1
GPR141 WILD-TYPE	71	71	32	62

'GPR141 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S4510. Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GPR141 MUTATED	6	2	1
GPR141 WILD-TYPE	72	84	84

'GPR141 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.058

Table S4511. Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GPR141 MUTATED	2	0	5	2
GPR141 WILD-TYPE	31	78	46	85

Figure S1835. Get High-res Image Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.36

Table S4512. Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GPR141 MUTATED	5	1	0	1	1
GPR141 WILD-TYPE	60	58	42	33	56

'GPR141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.053

Table S4513. Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GPR141 MUTATED	3	0	1	0	1	0	3
GPR141 WILD-TYPE	33	21	47	56	38	37	17

Figure S1836. Get High-res Image Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.091

Table S4514. Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GPR141 MUTATED	8	1	0
GPR141 WILD-TYPE	118	95	67

Figure S1837. Get High-res Image Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S4515. Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GPR141 MUTATED	4	4	1	0
GPR141 WILD-TYPE	52	101	59	68

'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.65

Table S4516. Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GPR141 MUTATED	0	1	4	1	0	1
GPR141 WILD-TYPE	34	17	55	37	19	42

'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 0.92

Table S4517. Gene #457: 'GPR141 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GPR141 MUTATED	5	1	1
GPR141 WILD-TYPE	117	50	37

'TLR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.79

Table S4518. Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TLR4 MUTATED	8	7	2	3	1
TLR4 WILD-TYPE	71	119	25	40	11

'TLR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.13

Table S4519. Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TLR4 MUTATED	5	10	1	1
TLR4 WILD-TYPE	66	66	33	62

Figure S1838. Get High-res Image Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TLR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.956 (Fisher's exact test), Q value = 0.99

Table S4520. Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TLR4 MUTATED	6	6	7
TLR4 WILD-TYPE	72	80	78

'TLR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.54

Table S4521. Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TLR4 MUTATED	4	6	5	4
TLR4 WILD-TYPE	29	72	46	83

'TLR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S4522. Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TLR4 MUTATED	4	2	1	5	7
TLR4 WILD-TYPE	61	57	41	29	50

'TLR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.76

Table S4523. Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TLR4 MUTATED	2	1	2	3	5	4	2
TLR4 WILD-TYPE	34	20	46	53	34	33	18

'TLR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 0.19

Table S4524. Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TLR4 MUTATED	10	3	8
TLR4 WILD-TYPE	116	93	59

'TLR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.22

Table S4525. Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TLR4 MUTATED	5	5	2	9
TLR4 WILD-TYPE	51	100	58	59

'TLR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.56

Table S4526. Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TLR4 MUTATED	3	3	5	3	2	1
TLR4 WILD-TYPE	31	15	54	35	17	42

'TLR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 0.8

Table S4527. Gene #458: 'TLR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TLR4 MUTATED	9	4	4
TLR4 WILD-TYPE	113	47	34

'LYSMD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.3

Table S4528. Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LYSMD3 MUTATED	1	7	1	0	1
LYSMD3 WILD-TYPE	78	119	26	43	11

'LYSMD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0702 (Fisher's exact test), Q value = 0.17

Table S4529. Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LYSMD3 MUTATED	0	6	1	2
LYSMD3 WILD-TYPE	71	70	33	61

'LYSMD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.48

Table S4530. Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LYSMD3 MUTATED	4	3	1
LYSMD3 WILD-TYPE	74	83	84

'LYSMD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 0.99

Table S4531. Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LYSMD3 MUTATED	1	2	2	3
LYSMD3 WILD-TYPE	32	76	49	84

'LYSMD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.37

Table S4532. Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LYSMD3 MUTATED	5	2	2	1	0
LYSMD3 WILD-TYPE	60	57	40	33	57

'LYSMD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.56

Table S4533. Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LYSMD3 MUTATED	2	0	1	3	2	0	2
LYSMD3 WILD-TYPE	34	21	47	53	37	37	18

'LYSMD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.46

Table S4534. Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LYSMD3 MUTATED	7	2	1
LYSMD3 WILD-TYPE	119	94	66

'LYSMD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.61

Table S4535. Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LYSMD3 MUTATED	3	5	1	1
LYSMD3 WILD-TYPE	53	100	59	67

'LYSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 0.95

Table S4536. Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LYSMD3 MUTATED	1	1	2	2	1	1
LYSMD3 WILD-TYPE	33	17	57	36	18	42

'LYSMD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.77

Table S4537. Gene #459: 'LYSMD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LYSMD3 MUTATED	5	1	2
LYSMD3 WILD-TYPE	117	50	36

'LIAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.42

Table S4538. Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LIAS MUTATED	0	5	0	0	0
LIAS WILD-TYPE	79	121	27	43	12

'LIAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.062

Table S4539. Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LIAS MUTATED	0	5	0	0
LIAS WILD-TYPE	71	71	34	63

Figure S1839. Get High-res Image Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LIAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.51

Table S4540. Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LIAS MUTATED	2	0	2
LIAS WILD-TYPE	76	86	83

'LIAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00153 (Fisher's exact test), Q value = 0.017

Table S4541. Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LIAS MUTATED	0	0	4	0
LIAS WILD-TYPE	33	78	47	87

Figure S1840. Get High-res Image Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LIAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.12

Table S4542. Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LIAS MUTATED	4	0	0	1	0
LIAS WILD-TYPE	61	59	42	33	57

Figure S1841. Get High-res Image Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LIAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.42

Table S4543. Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LIAS MUTATED	0	0	0	2	2	0	1
LIAS WILD-TYPE	36	21	48	54	37	37	19

'LIAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.15

Table S4544. Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LIAS MUTATED	5	0	0
LIAS WILD-TYPE	121	96	67

'LIAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.052

Table S4545. Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LIAS MUTATED	4	1	0	0
LIAS WILD-TYPE	52	104	60	68

Figure S1842. Get High-res Image Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LIAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.37

Table S4546. Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LIAS MUTATED	0	1	3	0	0	0
LIAS WILD-TYPE	34	17	56	38	19	43

'LIAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.31

Table S4547. Gene #460: 'LIAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LIAS MUTATED	2	0	2
LIAS WILD-TYPE	120	51	36

'MAP7D3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.073

Table S4548. Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAP7D3 MUTATED	1	14	0	1	0
MAP7D3 WILD-TYPE	78	112	27	42	12

Figure S1843. Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP7D3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.091

Table S4549. Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAP7D3 MUTATED	2	7	3	0
MAP7D3 WILD-TYPE	69	69	31	63

Figure S1844. Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP7D3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.1

Table S4550. Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MAP7D3 MUTATED	9	3	2
MAP7D3 WILD-TYPE	69	83	83

Figure S1845. Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MAP7D3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00153 (Fisher's exact test), Q value = 0.017

Table S4551. Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MAP7D3 MUTATED	2	0	8	4
MAP7D3 WILD-TYPE	31	78	43	83

Figure S1846. Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.063

Table S4552. Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MAP7D3 MUTATED	10	2	1	1	1
MAP7D3 WILD-TYPE	55	57	41	33	56

Figure S1847. Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0047

Table S4553. Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MAP7D3 MUTATED	4	0	0	1	3	1	6
MAP7D3 WILD-TYPE	32	21	48	55	36	36	14

Figure S1848. Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.069

Table S4554. Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MAP7D3 MUTATED	12	1	3
MAP7D3 WILD-TYPE	114	95	64

Figure S1849. Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00414 (Fisher's exact test), Q value = 0.03

Table S4555. Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MAP7D3 MUTATED	7	8	0	1
MAP7D3 WILD-TYPE	49	97	60	67

Figure S1850. Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.43

Table S4556. Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MAP7D3 MUTATED	3	1	2	3	1	0
MAP7D3 WILD-TYPE	31	17	57	35	18	43

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.061

Table S4557. Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MAP7D3 MUTATED	5	0	5
MAP7D3 WILD-TYPE	117	51	33

Figure S1851. Get High-res Image Gene #461: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ERN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.34

Table S4558. Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ERN2 MUTATED	2	9	0	0	0
ERN2 WILD-TYPE	77	117	27	43	12

'ERN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 0.83

Table S4559. Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ERN2 MUTATED	2	4	1	1
ERN2 WILD-TYPE	69	72	33	62

'ERN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.74

Table S4560. Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ERN2 MUTATED	4	2	4
ERN2 WILD-TYPE	74	84	81

'ERN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 0.66

Table S4561. Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ERN2 MUTATED	2	3	3	2
ERN2 WILD-TYPE	31	75	48	85

'ERN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.36

Table S4562. Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ERN2 MUTATED	5	2	1	1	0
ERN2 WILD-TYPE	60	57	41	33	57

'ERN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.0061

Table S4563. Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ERN2 MUTATED	4	0	0	1	0	0	4
ERN2 WILD-TYPE	32	21	48	55	39	37	16

Figure S1852. Get High-res Image Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ERN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.75

Table S4564. Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ERN2 MUTATED	6	4	1
ERN2 WILD-TYPE	120	92	66

'ERN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.57

Table S4565. Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ERN2 MUTATED	4	4	2	1
ERN2 WILD-TYPE	52	101	58	67

'ERN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 0.92

Table S4566. Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ERN2 MUTATED	2	1	3	1	0	1
ERN2 WILD-TYPE	32	17	56	37	19	42

'ERN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.48

Table S4567. Gene #462: 'ERN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ERN2 MUTATED	4	1	3
ERN2 WILD-TYPE	118	50	35

'DSTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.57

Table S4568. Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DSTN MUTATED	0	4	0	0	0
DSTN WILD-TYPE	79	122	27	43	12

'DSTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.4

Table S4569. Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DSTN MUTATED	0	3	0	1
DSTN WILD-TYPE	71	73	34	62

'DSTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.17

Table S4570. Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DSTN MUTATED	3	0	1
DSTN WILD-TYPE	75	86	84

'DSTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.27

Table S4571. Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DSTN MUTATED	1	1	2	0
DSTN WILD-TYPE	32	77	49	87

'DSTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.36

Table S4572. Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DSTN MUTATED	2	0	0	1	0
DSTN WILD-TYPE	63	59	42	33	57

'DSTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S4573. Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DSTN MUTATED	1	0	0	0	1	0	1
DSTN WILD-TYPE	35	21	48	56	38	37	19

'DSTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.15

Table S4574. Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DSTN MUTATED	5	0	0
DSTN WILD-TYPE	121	96	67

'DSTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0797 (Fisher's exact test), Q value = 0.18

Table S4575. Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DSTN MUTATED	3	2	0	0
DSTN WILD-TYPE	53	103	60	68

'DSTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.5

Table S4576. Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DSTN MUTATED	2	0	2	0	0	0
DSTN WILD-TYPE	32	18	57	38	19	43

'DSTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.31

Table S4577. Gene #463: 'DSTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DSTN MUTATED	2	0	2
DSTN WILD-TYPE	120	51	36

'PTPDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 0.97

Table S4578. Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PTPDC1 MUTATED	2	5	0	1	0
PTPDC1 WILD-TYPE	77	121	27	42	12

'PTPDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4579. Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PTPDC1 MUTATED	2	2	1	2
PTPDC1 WILD-TYPE	69	74	33	61

'PTPDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.66

Table S4580. Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PTPDC1 MUTATED	3	1	3
PTPDC1 WILD-TYPE	75	85	82

'PTPDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.53

Table S4581. Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PTPDC1 MUTATED	1	2	3	1
PTPDC1 WILD-TYPE	32	76	48	86

'PTPDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 0.88

Table S4582. Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PTPDC1 MUTATED	2	1	1	2	2
PTPDC1 WILD-TYPE	63	58	41	32	55

'PTPDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.49

Table S4583. Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PTPDC1 MUTATED	0	1	1	4	2	0	0
PTPDC1 WILD-TYPE	36	20	47	52	37	37	20

'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.54

Table S4584. Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PTPDC1 MUTATED	5	1	2
PTPDC1 WILD-TYPE	121	95	65

'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.34

Table S4585. Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PTPDC1 MUTATED	4	2	1	1
PTPDC1 WILD-TYPE	52	103	59	67

'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.6

Table S4586. Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PTPDC1 MUTATED	1	0	4	1	0	0
PTPDC1 WILD-TYPE	33	18	55	37	19	43

'PTPDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S4587. Gene #464: 'PTPDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PTPDC1 MUTATED	3	1	2
PTPDC1 WILD-TYPE	119	50	36

'FYB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.34

Table S4588. Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FYB MUTATED	1	8	0	1	1
FYB WILD-TYPE	78	118	27	42	11

'FYB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.071

Table S4589. Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FYB MUTATED	1	7	1	0
FYB WILD-TYPE	70	69	33	63

Figure S1853. Get High-res Image Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FYB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S4590. Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FYB MUTATED	5	1	3
FYB WILD-TYPE	73	85	82

'FYB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.0063

Table S4591. Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FYB MUTATED	1	1	7	0
FYB WILD-TYPE	32	77	44	87

Figure S1854. Get High-res Image Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FYB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.22

Table S4592. Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FYB MUTATED	7	1	1	1	1
FYB WILD-TYPE	58	58	41	33	56

'FYB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00188 (Fisher's exact test), Q value = 0.019

Table S4593. Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FYB MUTATED	0	1	0	2	4	0	4
FYB WILD-TYPE	36	20	48	54	35	37	16

Figure S1855. Get High-res Image Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FYB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.076

Table S4594. Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FYB MUTATED	8	0	3
FYB WILD-TYPE	118	96	64

Figure S1856. Get High-res Image Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FYB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.0066

Table S4595. Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FYB MUTATED	8	2	0	1
FYB WILD-TYPE	48	103	60	67

Figure S1857. Get High-res Image Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FYB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.53

Table S4596. Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FYB MUTATED	1	1	3	3	0	0
FYB WILD-TYPE	33	17	56	35	19	43

'FYB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S4597. Gene #465: 'FYB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FYB MUTATED	5	0	3
FYB WILD-TYPE	117	51	35

'NDST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.35

Table S4598. Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NDST2 MUTATED	1	6	0	0	1
NDST2 WILD-TYPE	78	120	27	43	11

'NDST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.47

Table S4599. Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NDST2 MUTATED	0	3	1	1
NDST2 WILD-TYPE	71	73	33	62

'NDST2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.23

Table S4600. Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NDST2 MUTATED	3	0	4
NDST2 WILD-TYPE	75	86	81

'NDST2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 0.21

Table S4601. Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NDST2 MUTATED	1	3	3	0
NDST2 WILD-TYPE	32	75	48	87

'NDST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00306 (Fisher's exact test), Q value = 0.026

Table S4602. Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NDST2 MUTATED	7	0	0	0	1
NDST2 WILD-TYPE	58	59	42	34	56

Figure S1858. Get High-res Image Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NDST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00825 (Fisher's exact test), Q value = 0.047

Table S4603. Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NDST2 MUTATED	3	0	0	2	0	0	3
NDST2 WILD-TYPE	33	21	48	54	39	37	17

Figure S1859. Get High-res Image Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NDST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0723 (Fisher's exact test), Q value = 0.17

Table S4604. Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NDST2 MUTATED	6	0	2
NDST2 WILD-TYPE	120	96	65

'NDST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.23

Table S4605. Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NDST2 MUTATED	4	3	0	1
NDST2 WILD-TYPE	52	102	60	67

'NDST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.5

Table S4606. Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NDST2 MUTATED	0	1	3	2	0	0
NDST2 WILD-TYPE	34	17	56	36	19	43

'NDST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S4607. Gene #466: 'NDST2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NDST2 MUTATED	4	0	2
NDST2 WILD-TYPE	118	51	36

'TAF7L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.37

Table S4608. Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TAF7L MUTATED	0	6	0	1	0
TAF7L WILD-TYPE	79	120	27	42	12

'TAF7L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00658 (Fisher's exact test), Q value = 0.04

Table S4609. Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TAF7L MUTATED	0	1	4	2
TAF7L WILD-TYPE	71	75	30	61

Figure S1860. Get High-res Image Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TAF7L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.39

Table S4610. Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TAF7L MUTATED	4	1	2
TAF7L WILD-TYPE	74	85	83

'TAF7L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 0.55

Table S4611. Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TAF7L MUTATED	2	1	2	2
TAF7L WILD-TYPE	31	77	49	85

'TAF7L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.0086

Table S4612. Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TAF7L MUTATED	7	0	0	0	0
TAF7L WILD-TYPE	58	59	42	34	57

Figure S1861. Get High-res Image Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TAF7L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00792 (Fisher's exact test), Q value = 0.045

Table S4613. Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TAF7L MUTATED	2	1	1	0	0	0	3
TAF7L WILD-TYPE	34	20	47	56	39	37	17

Figure S1862. Get High-res Image Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TAF7L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0094 (Fisher's exact test), Q value = 0.05

Table S4614. Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TAF7L MUTATED	7	0	0
TAF7L WILD-TYPE	119	96	67

Figure S1863. Get High-res Image Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TAF7L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S4615. Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TAF7L MUTATED	2	5	0	0
TAF7L WILD-TYPE	54	100	60	68

'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.42

Table S4616. Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TAF7L MUTATED	0	0	4	1	0	0
TAF7L WILD-TYPE	34	18	55	37	19	43

'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 0.88

Table S4617. Gene #467: 'TAF7L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TAF7L MUTATED	4	1	0
TAF7L WILD-TYPE	118	50	38

'SAP130 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.16

Table S4618. Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SAP130 MUTATED	0	8	0	2	1
SAP130 WILD-TYPE	79	118	27	41	11

'SAP130 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00306 (Fisher's exact test), Q value = 0.026

Table S4619. Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SAP130 MUTATED	0	7	1	0
SAP130 WILD-TYPE	71	69	33	63

Figure S1864. Get High-res Image Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SAP130 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.69

Table S4620. Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SAP130 MUTATED	4	2	2
SAP130 WILD-TYPE	74	84	83

'SAP130 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00117 (Fisher's exact test), Q value = 0.014

Table S4621. Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SAP130 MUTATED	1	0	6	1
SAP130 WILD-TYPE	32	78	45	86

Figure S1865. Get High-res Image Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SAP130 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00224 (Fisher's exact test), Q value = 0.021

Table S4622. Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SAP130 MUTATED	8	1	0	2	0
SAP130 WILD-TYPE	57	58	42	32	57

Figure S1866. Get High-res Image Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SAP130 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.069

Table S4623. Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SAP130 MUTATED	1	1	0	3	2	0	4
SAP130 WILD-TYPE	35	20	48	53	37	37	16

Figure S1867. Get High-res Image Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SAP130 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00395 (Fisher's exact test), Q value = 0.03

Table S4624. Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SAP130 MUTATED	10	0	1
SAP130 WILD-TYPE	116	96	66

Figure S1868. Get High-res Image Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SAP130 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.004 (Fisher's exact test), Q value = 0.03

Table S4625. Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SAP130 MUTATED	6	5	0	0
SAP130 WILD-TYPE	50	100	60	68

Figure S1869. Get High-res Image Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SAP130 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.13

Table S4626. Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SAP130 MUTATED	0	2	1	3	0	0
SAP130 WILD-TYPE	34	16	58	35	19	43

Figure S1870. Get High-res Image Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SAP130 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0902 (Fisher's exact test), Q value = 0.19

Table S4627. Gene #468: 'SAP130 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SAP130 MUTATED	3	0	3
SAP130 WILD-TYPE	119	51	35

'SMARCB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 0.15

Table S4628. Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SMARCB1 MUTATED	1	7	1	0	2
SMARCB1 WILD-TYPE	78	119	26	43	10

'SMARCB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.12

Table S4629. Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SMARCB1 MUTATED	1	6	1	0
SMARCB1 WILD-TYPE	70	70	33	63

Figure S1871. Get High-res Image Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMARCB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S4630. Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SMARCB1 MUTATED	5	1	3
SMARCB1 WILD-TYPE	73	85	82

'SMARCB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.39

Table S4631. Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SMARCB1 MUTATED	2	3	3	1
SMARCB1 WILD-TYPE	31	75	48	86

'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.13

Table S4632. Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SMARCB1 MUTATED	5	1	0	2	0
SMARCB1 WILD-TYPE	60	58	42	32	57

Figure S1872. Get High-res Image Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.29

Table S4633. Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SMARCB1 MUTATED	2	0	0	3	1	0	2
SMARCB1 WILD-TYPE	34	21	48	53	38	37	18

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S4634. Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SMARCB1 MUTATED	6	3	2
SMARCB1 WILD-TYPE	120	93	65

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00368 (Fisher's exact test), Q value = 0.029

Table S4635. Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SMARCB1 MUTATED	7	1	2	1
SMARCB1 WILD-TYPE	49	104	58	67

Figure S1873. Get High-res Image Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 0.93

Table S4636. Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SMARCB1 MUTATED	1	1	1	1	0	2
SMARCB1 WILD-TYPE	33	17	58	37	19	41

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.49

Table S4637. Gene #469: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SMARCB1 MUTATED	2	2	2
SMARCB1 WILD-TYPE	120	49	36

'EPHA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S4638. Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPHA5 MUTATED	6	13	2	1	3
EPHA5 WILD-TYPE	73	113	25	42	9

'EPHA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00621 (Fisher's exact test), Q value = 0.039

Table S4639. Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPHA5 MUTATED	4	14	1	2
EPHA5 WILD-TYPE	67	62	33	61

Figure S1874. Get High-res Image Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPHA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 0.18

Table S4640. Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EPHA5 MUTATED	10	3	6
EPHA5 WILD-TYPE	68	83	79

'EPHA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.65

Table S4641. Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EPHA5 MUTATED	3	5	6	5
EPHA5 WILD-TYPE	30	73	45	82

'EPHA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.077

Table S4642. Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EPHA5 MUTATED	11	1	2	4	3
EPHA5 WILD-TYPE	54	58	40	30	54

Figure S1875. Get High-res Image Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00202 (Fisher's exact test), Q value = 0.02

Table S4643. Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EPHA5 MUTATED	1	1	1	4	7	1	6
EPHA5 WILD-TYPE	35	20	47	52	32	36	14

Figure S1876. Get High-res Image Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 0.11

Table S4644. Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EPHA5 MUTATED	16	3	7
EPHA5 WILD-TYPE	110	93	60

Figure S1877. Get High-res Image Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.12

Table S4645. Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EPHA5 MUTATED	9	9	1	7
EPHA5 WILD-TYPE	47	96	59	61

Figure S1878. Get High-res Image Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.12

Table S4646. Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EPHA5 MUTATED	3	3	8	4	0	0
EPHA5 WILD-TYPE	31	15	51	34	19	43

Figure S1879. Get High-res Image Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EPHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S4647. Gene #470: 'EPHA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EPHA5 MUTATED	13	1	4
EPHA5 WILD-TYPE	109	50	34

'WAPAL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.094

Table S4648. Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WAPAL MUTATED	0	8	3	1	1
WAPAL WILD-TYPE	79	118	24	42	11

Figure S1880. Get High-res Image Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WAPAL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.17

Table S4649. Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WAPAL MUTATED	0	6	2	3
WAPAL WILD-TYPE	71	70	32	60

'WAPAL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 0.2

Table S4650. Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
WAPAL MUTATED	6	1	5
WAPAL WILD-TYPE	72	85	80

'WAPAL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S4651. Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
WAPAL MUTATED	3	4	4	1
WAPAL WILD-TYPE	30	74	47	86

'WAPAL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00384 (Fisher's exact test), Q value = 0.029

Table S4652. Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
WAPAL MUTATED	9	2	2	0	0
WAPAL WILD-TYPE	56	57	40	34	57

Figure S1881. Get High-res Image Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WAPAL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.34

Table S4653. Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
WAPAL MUTATED	3	1	1	3	2	0	3
WAPAL WILD-TYPE	33	20	47	53	37	37	17

'WAPAL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00772 (Fisher's exact test), Q value = 0.045

Table S4654. Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
WAPAL MUTATED	11	2	0
WAPAL WILD-TYPE	115	94	67

Figure S1882. Get High-res Image Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WAPAL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.095

Table S4655. Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
WAPAL MUTATED	6	5	2	0
WAPAL WILD-TYPE	50	100	58	68

Figure S1883. Get High-res Image Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WAPAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.63

Table S4656. Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
WAPAL MUTATED	0	1	5	2	0	2
WAPAL WILD-TYPE	34	17	54	36	19	41

'WAPAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S4657. Gene #471: 'WAPAL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
WAPAL MUTATED	5	2	3
WAPAL WILD-TYPE	117	49	35

'CEP120 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.12

Table S4658. Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CEP120 MUTATED	0	9	1	0	0
CEP120 WILD-TYPE	79	117	26	43	12

Figure S1884. Get High-res Image Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CEP120 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S4659. Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CEP120 MUTATED	0	5	1	2
CEP120 WILD-TYPE	71	71	33	61

'CEP120 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.27

Table S4660. Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CEP120 MUTATED	5	1	2
CEP120 WILD-TYPE	73	85	83

'CEP120 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.3

Table S4661. Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CEP120 MUTATED	1	2	4	1
CEP120 WILD-TYPE	32	76	47	86

'CEP120 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.28

Table S4662. Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CEP120 MUTATED	5	1	1	1	0
CEP120 WILD-TYPE	60	58	41	33	57

'CEP120 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S4663. Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CEP120 MUTATED	1	0	1	1	2	0	3
CEP120 WILD-TYPE	35	21	47	55	37	37	17

'CEP120 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 0.18

Table S4664. Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CEP120 MUTATED	8	1	1
CEP120 WILD-TYPE	118	95	66

'CEP120 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.13

Table S4665. Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CEP120 MUTATED	5	4	1	0
CEP120 WILD-TYPE	51	101	59	68

Figure S1885. Get High-res Image Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CEP120 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.56

Table S4666. Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CEP120 MUTATED	1	0	3	3	1	0
CEP120 WILD-TYPE	33	18	56	35	18	43

'CEP120 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.77

Table S4667. Gene #472: 'CEP120 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CEP120 MUTATED	5	1	2
CEP120 WILD-TYPE	117	50	36

'RDX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 0.8

Table S4668. Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RDX MUTATED	2	5	0	0	0
RDX WILD-TYPE	77	121	27	43	12

'RDX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.34

Table S4669. Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RDX MUTATED	2	1	2	0
RDX WILD-TYPE	69	75	32	63

'RDX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00925 (Fisher's exact test), Q value = 0.05

Table S4670. Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RDX MUTATED	5	0	1
RDX WILD-TYPE	73	86	84

Figure S1886. Get High-res Image Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RDX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0372 (Fisher's exact test), Q value = 0.11

Table S4671. Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RDX MUTATED	2	0	3	1
RDX WILD-TYPE	31	78	48	86

Figure S1887. Get High-res Image Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RDX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.55

Table S4672. Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RDX MUTATED	3	0	1	0	1
RDX WILD-TYPE	62	59	41	34	56

'RDX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.28

Table S4673. Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RDX MUTATED	1	0	0	1	0	1	2
RDX WILD-TYPE	35	21	48	55	39	36	18

'RDX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.7

Table S4674. Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RDX MUTATED	4	1	2
RDX WILD-TYPE	122	95	65

'RDX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.37

Table S4675. Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RDX MUTATED	3	2	0	2
RDX WILD-TYPE	53	103	60	66

'RDX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.55

Table S4676. Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RDX MUTATED	2	0	1	2	0	0
RDX WILD-TYPE	32	18	58	36	19	43

'RDX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.58

Table S4677. Gene #473: 'RDX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RDX MUTATED	4	0	1
RDX WILD-TYPE	118	51	37

'SPATA5L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.67

Table S4678. Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SPATA5L1 MUTATED	1	5	1	0	0
SPATA5L1 WILD-TYPE	78	121	26	43	12

'SPATA5L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.0064

Table S4679. Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SPATA5L1 MUTATED	0	2	5	0
SPATA5L1 WILD-TYPE	71	74	29	63

Figure S1888. Get High-res Image Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPATA5L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 0.13

Table S4680. Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SPATA5L1 MUTATED	4	1	0
SPATA5L1 WILD-TYPE	74	85	85

Figure S1889. Get High-res Image Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SPATA5L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0742 (Fisher's exact test), Q value = 0.17

Table S4681. Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SPATA5L1 MUTATED	2	0	2	1
SPATA5L1 WILD-TYPE	31	78	49	86

'SPATA5L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00744 (Fisher's exact test), Q value = 0.043

Table S4682. Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SPATA5L1 MUTATED	5	0	0	0	0
SPATA5L1 WILD-TYPE	60	59	42	34	57

Figure S1890. Get High-res Image Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SPATA5L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0347 (Fisher's exact test), Q value = 0.11

Table S4683. Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SPATA5L1 MUTATED	1	1	0	0	1	0	2
SPATA5L1 WILD-TYPE	35	20	48	56	38	37	18

Figure S1891. Get High-res Image Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 0.85

Table S4684. Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SPATA5L1 MUTATED	4	2	1
SPATA5L1 WILD-TYPE	122	94	66

'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.31

Table S4685. Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SPATA5L1 MUTATED	3	2	2	0
SPATA5L1 WILD-TYPE	53	103	58	68

'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S4686. Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SPATA5L1 MUTATED	1	0	3	1	0	1
SPATA5L1 WILD-TYPE	33	18	56	37	19	42

'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 0.79

Table S4687. Gene #474: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SPATA5L1 MUTATED	4	2	0
SPATA5L1 WILD-TYPE	118	49	38

'TACC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.098

Table S4688. Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TACC2 MUTATED	5	20	1	1	2
TACC2 WILD-TYPE	74	106	26	42	10

Figure S1892. Get High-res Image Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TACC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.35

Table S4689. Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TACC2 MUTATED	4	10	4	3
TACC2 WILD-TYPE	67	66	30	60

'TACC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S4690. Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TACC2 MUTATED	12	5	7
TACC2 WILD-TYPE	66	81	78

'TACC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.28

Table S4691. Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TACC2 MUTATED	5	6	8	5
TACC2 WILD-TYPE	28	72	43	82

'TACC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00543 (Fisher's exact test), Q value = 0.036

Table S4692. Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TACC2 MUTATED	14	2	1	3	5
TACC2 WILD-TYPE	51	57	41	31	52

Figure S1893. Get High-res Image Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TACC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.044 (Fisher's exact test), Q value = 0.12

Table S4693. Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TACC2 MUTATED	5	1	0	6	7	3	3
TACC2 WILD-TYPE	31	20	48	50	32	34	17

Figure S1894. Get High-res Image Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TACC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.06

Table S4694. Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TACC2 MUTATED	21	5	4
TACC2 WILD-TYPE	105	91	63

Figure S1895. Get High-res Image Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TACC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.0094

Table S4695. Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TACC2 MUTATED	15	6	3	6
TACC2 WILD-TYPE	41	99	57	62

Figure S1896. Get High-res Image Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TACC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.45

Table S4696. Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TACC2 MUTATED	5	1	8	4	1	1
TACC2 WILD-TYPE	29	17	51	34	18	42

'TACC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.24

Table S4697. Gene #475: 'TACC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TACC2 MUTATED	10	3	7
TACC2 WILD-TYPE	112	48	31

'CD58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.34

Table S4698. Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CD58 MUTATED	0	5	1	0	0
CD58 WILD-TYPE	79	121	26	43	12

'CD58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.47

Table S4699. Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CD58 MUTATED	0	3	1	1
CD58 WILD-TYPE	71	73	33	62

'CD58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.18

Table S4700. Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CD58 MUTATED	3	0	1
CD58 WILD-TYPE	75	86	84

'CD58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.13

Table S4701. Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CD58 MUTATED	0	1	3	0
CD58 WILD-TYPE	33	77	48	87

Figure S1897. Get High-res Image Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CD58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00195 (Fisher's exact test), Q value = 0.02

Table S4702. Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CD58 MUTATED	6	0	0	0	0
CD58 WILD-TYPE	59	59	42	34	57

Figure S1898. Get High-res Image Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CD58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.62

Table S4703. Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CD58 MUTATED	1	1	0	2	1	0	1
CD58 WILD-TYPE	35	20	48	54	38	37	19

'CD58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.077

Table S4704. Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CD58 MUTATED	6	0	0
CD58 WILD-TYPE	120	96	67

Figure S1899. Get High-res Image Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CD58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S4705. Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CD58 MUTATED	2	4	0	0
CD58 WILD-TYPE	54	101	60	68

'CD58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.29

Table S4706. Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CD58 MUTATED	0	2	2	1	0	0
CD58 WILD-TYPE	34	16	57	37	19	43

'CD58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.41

Table S4707. Gene #476: 'CD58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CD58 MUTATED	3	0	2
CD58 WILD-TYPE	119	51	36

'KCTD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.25

Table S4708. Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCTD9 MUTATED	0	6	1	2	1
KCTD9 WILD-TYPE	79	120	26	41	11

'KCTD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.52

Table S4709. Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCTD9 MUTATED	1	4	0	1
KCTD9 WILD-TYPE	70	72	34	62

'KCTD9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.67

Table S4710. Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KCTD9 MUTATED	4	2	3
KCTD9 WILD-TYPE	74	84	82

'KCTD9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.62

Table S4711. Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KCTD9 MUTATED	2	2	3	2
KCTD9 WILD-TYPE	31	76	48	85

'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.34

Table S4712. Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KCTD9 MUTATED	4	3	2	0	0
KCTD9 WILD-TYPE	61	56	40	34	57

'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00501 (Fisher's exact test), Q value = 0.034

Table S4713. Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KCTD9 MUTATED	5	0	0	4	0	0	0
KCTD9 WILD-TYPE	31	21	48	52	39	37	20

Figure S1900. Get High-res Image Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.14

Table S4714. Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KCTD9 MUTATED	8	2	0
KCTD9 WILD-TYPE	118	94	67

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.33

Table S4715. Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KCTD9 MUTATED	2	6	2	0
KCTD9 WILD-TYPE	54	99	58	68

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.39

Table S4716. Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KCTD9 MUTATED	0	2	1	1	0	2
KCTD9 WILD-TYPE	34	16	58	37	19	41

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0923 (Fisher's exact test), Q value = 0.2

Table S4717. Gene #477: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KCTD9 MUTATED	3	0	3
KCTD9 WILD-TYPE	119	51	35

'KIAA1539 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.34

Table S4718. Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1539 MUTATED	0	5	1	0	0
KIAA1539 WILD-TYPE	79	121	26	43	12

'KIAA1539 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.079

Table S4719. Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1539 MUTATED	0	5	1	0
KIAA1539 WILD-TYPE	71	71	33	63

Figure S1901. Get High-res Image Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1539 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0028 (Fisher's exact test), Q value = 0.025

Table S4720. Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA1539 MUTATED	5	0	0
KIAA1539 WILD-TYPE	73	86	85

Figure S1902. Get High-res Image Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA1539 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0816 (Fisher's exact test), Q value = 0.18

Table S4721. Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA1539 MUTATED	1	0	3	1
KIAA1539 WILD-TYPE	32	78	48	86

'KIAA1539 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00732 (Fisher's exact test), Q value = 0.043

Table S4722. Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA1539 MUTATED	5	0	0	0	0
KIAA1539 WILD-TYPE	60	59	42	34	57

Figure S1903. Get High-res Image Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1539 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0817 (Fisher's exact test), Q value = 0.18

Table S4723. Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA1539 MUTATED	0	1	0	1	1	0	2
KIAA1539 WILD-TYPE	36	20	48	55	38	37	18

'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.67

Table S4724. Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA1539 MUTATED	4	1	1
KIAA1539 WILD-TYPE	122	95	66

'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0286 (Fisher's exact test), Q value = 0.095

Table S4725. Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA1539 MUTATED	4	2	0	0
KIAA1539 WILD-TYPE	52	103	60	68

Figure S1904. Get High-res Image Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.55

Table S4726. Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA1539 MUTATED	1	0	2	3	0	0
KIAA1539 WILD-TYPE	33	18	57	35	19	43

'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0927 (Fisher's exact test), Q value = 0.2

Table S4727. Gene #478: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA1539 MUTATED	3	0	3
KIAA1539 WILD-TYPE	119	51	35

'ZFP36L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.6

Table S4728. Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZFP36L2 MUTATED	1	4	1	1	1
ZFP36L2 WILD-TYPE	78	122	26	42	11

'ZFP36L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00721 (Fisher's exact test), Q value = 0.042

Table S4729. Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZFP36L2 MUTATED	1	7	0	0
ZFP36L2 WILD-TYPE	70	69	34	63

Figure S1905. Get High-res Image Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFP36L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.12

Table S4730. Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZFP36L2 MUTATED	4	1	0
ZFP36L2 WILD-TYPE	74	85	85

Figure S1906. Get High-res Image Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZFP36L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.078

Table S4731. Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZFP36L2 MUTATED	0	0	4	1
ZFP36L2 WILD-TYPE	33	78	47	86

Figure S1907. Get High-res Image Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 0.8

Table S4732. Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZFP36L2 MUTATED	3	1	1	2	1
ZFP36L2 WILD-TYPE	62	58	41	32	56

'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.69

Table S4733. Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZFP36L2 MUTATED	0	0	1	2	3	1	1
ZFP36L2 WILD-TYPE	36	21	47	54	36	36	19

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.36

Table S4734. Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZFP36L2 MUTATED	6	1	1
ZFP36L2 WILD-TYPE	120	95	66

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0024

Table S4735. Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZFP36L2 MUTATED	7	0	1	0
ZFP36L2 WILD-TYPE	49	105	59	68

Figure S1908. Get High-res Image Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0213 (Fisher's exact test), Q value = 0.08

Table S4736. Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZFP36L2 MUTATED	1	2	0	3	0	0
ZFP36L2 WILD-TYPE	33	16	59	35	19	43

Figure S1909. Get High-res Image Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00089 (Fisher's exact test), Q value = 0.012

Table S4737. Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZFP36L2 MUTATED	1	0	5
ZFP36L2 WILD-TYPE	121	51	33

Figure S1910. Get High-res Image Gene #479: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TNS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.24

Table S4738. Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TNS4 MUTATED	2	10	0	0	0
TNS4 WILD-TYPE	77	116	27	43	12

'TNS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.6

Table S4739. Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TNS4 MUTATED	2	5	1	1
TNS4 WILD-TYPE	69	71	33	62

'TNS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.11

Table S4740. Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TNS4 MUTATED	8	2	2
TNS4 WILD-TYPE	70	84	83

Figure S1911. Get High-res Image Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TNS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.38

Table S4741. Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TNS4 MUTATED	3	3	4	2
TNS4 WILD-TYPE	30	75	47	85

'TNS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 0.16

Table S4742. Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TNS4 MUTATED	5	1	0	4	2
TNS4 WILD-TYPE	60	58	42	30	55

'TNS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.087

Table S4743. Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TNS4 MUTATED	3	0	0	2	1	2	4
TNS4 WILD-TYPE	33	21	48	54	38	35	16

Figure S1912. Get High-res Image Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.4

Table S4744. Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TNS4 MUTATED	8	2	2
TNS4 WILD-TYPE	118	94	65

'TNS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S4745. Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TNS4 MUTATED	3	6	1	2
TNS4 WILD-TYPE	53	99	59	66

'TNS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.87

Table S4746. Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TNS4 MUTATED	2	0	4	2	0	1
TNS4 WILD-TYPE	32	18	55	36	19	42

'TNS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.78

Table S4747. Gene #480: 'TNS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TNS4 MUTATED	6	1	2
TNS4 WILD-TYPE	116	50	36

'ZBTB49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 0.84

Table S4748. Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZBTB49 MUTATED	1	5	0	1	0
ZBTB49 WILD-TYPE	78	121	27	42	12

'ZBTB49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.59

Table S4749. Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZBTB49 MUTATED	1	4	0	2
ZBTB49 WILD-TYPE	70	72	34	61

'ZBTB49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.41

Table S4750. Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZBTB49 MUTATED	4	1	1
ZBTB49 WILD-TYPE	74	85	84

'ZBTB49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.56

Table S4751. Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZBTB49 MUTATED	2	1	1	2
ZBTB49 WILD-TYPE	31	77	50	85

'ZBTB49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S4752. Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZBTB49 MUTATED	4	0	0	1	2
ZBTB49 WILD-TYPE	61	59	42	33	55

'ZBTB49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.32

Table S4753. Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZBTB49 MUTATED	1	0	0	2	2	0	2
ZBTB49 WILD-TYPE	35	21	48	54	37	37	18

'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.85

Table S4754. Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZBTB49 MUTATED	4	2	1
ZBTB49 WILD-TYPE	122	94	66

'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 0.13

Table S4755. Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZBTB49 MUTATED	4	1	0	2
ZBTB49 WILD-TYPE	52	104	60	66

Figure S1913. Get High-res Image Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 0.99

Table S4756. Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZBTB49 MUTATED	1	0	3	1	1	1
ZBTB49 WILD-TYPE	33	18	56	37	18	42

'ZBTB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0353 (Fisher's exact test), Q value = 0.11

Table S4757. Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZBTB49 MUTATED	3	0	4
ZBTB49 WILD-TYPE	119	51	34

Figure S1914. Get High-res Image Gene #481: 'ZBTB49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CAMTA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.001 (Fisher's exact test), Q value = 0.013

Table S4758. Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CAMTA2 MUTATED	0	15	1	0	0
CAMTA2 WILD-TYPE	79	111	26	43	12

Figure S1915. Get High-res Image Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CAMTA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.0093

Table S4759. Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CAMTA2 MUTATED	1	10	4	0
CAMTA2 WILD-TYPE	70	66	30	63

Figure S1916. Get High-res Image Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CAMTA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.058

Table S4760. Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CAMTA2 MUTATED	9	1	3
CAMTA2 WILD-TYPE	69	85	82

Figure S1917. Get High-res Image Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CAMTA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.073

Table S4761. Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CAMTA2 MUTATED	2	1	7	3
CAMTA2 WILD-TYPE	31	77	44	84

Figure S1918. Get High-res Image Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CAMTA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0218 (Fisher's exact test), Q value = 0.081

Table S4762. Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CAMTA2 MUTATED	7	1	3	3	0
CAMTA2 WILD-TYPE	58	58	39	31	57

Figure S1919. Get High-res Image Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CAMTA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.21

Table S4763. Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CAMTA2 MUTATED	1	1	1	6	2	0	3
CAMTA2 WILD-TYPE	35	20	47	50	37	37	17

'CAMTA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00864 (Fisher's exact test), Q value = 0.048

Table S4764. Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CAMTA2 MUTATED	13	2	1
CAMTA2 WILD-TYPE	113	94	66

Figure S1920. Get High-res Image Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CAMTA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.1

Table S4765. Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CAMTA2 MUTATED	7	7	1	1
CAMTA2 WILD-TYPE	49	98	59	67

Figure S1921. Get High-res Image Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CAMTA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00161 (Fisher's exact test), Q value = 0.018

Table S4766. Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CAMTA2 MUTATED	1	4	9	1	0	0
CAMTA2 WILD-TYPE	33	14	50	37	19	43

Figure S1922. Get High-res Image Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CAMTA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S4767. Gene #482: 'CAMTA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CAMTA2 MUTATED	9	1	5
CAMTA2 WILD-TYPE	113	50	33

'KRT24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.66

Table S4768. Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KRT24 MUTATED	1	2	0	2	0
KRT24 WILD-TYPE	78	124	27	41	12

'KRT24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.39

Table S4769. Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KRT24 MUTATED	1	2	2	0
KRT24 WILD-TYPE	70	74	32	63

'KRT24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.18

Table S4770. Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KRT24 MUTATED	3	0	1
KRT24 WILD-TYPE	75	86	84

'KRT24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0845 (Fisher's exact test), Q value = 0.19

Table S4771. Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KRT24 MUTATED	2	1	1	0
KRT24 WILD-TYPE	31	77	50	87

'KRT24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.78

Table S4772. Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KRT24 MUTATED	2	0	1	0	1
KRT24 WILD-TYPE	63	59	41	34	56

'KRT24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0861 (Fisher's exact test), Q value = 0.19

Table S4773. Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KRT24 MUTATED	0	0	0	1	1	0	2
KRT24 WILD-TYPE	36	21	48	55	38	37	18

'KRT24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.32

Table S4774. Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KRT24 MUTATED	4	0	1
KRT24 WILD-TYPE	122	96	66

'KRT24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.63

Table S4775. Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KRT24 MUTATED	2	2	0	1
KRT24 WILD-TYPE	54	103	60	67

'KRT24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.73

Table S4776. Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KRT24 MUTATED	1	0	1	2	0	0
KRT24 WILD-TYPE	33	18	58	36	19	43

'KRT24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.71

Table S4777. Gene #483: 'KRT24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KRT24 MUTATED	3	0	1
KRT24 WILD-TYPE	119	51	37

'EEF2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 0.73

Table S4778. Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EEF2K MUTATED	2	4	0	1	1
EEF2K WILD-TYPE	77	122	27	42	11

'EEF2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4779. Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EEF2K MUTATED	2	2	0	1
EEF2K WILD-TYPE	69	74	34	62

'EEF2K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.66

Table S4780. Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EEF2K MUTATED	3	1	3
EEF2K WILD-TYPE	75	85	82

'EEF2K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.37

Table S4781. Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EEF2K MUTATED	0	3	3	1
EEF2K WILD-TYPE	33	75	48	86

'EEF2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.61

Table S4782. Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EEF2K MUTATED	4	1	0	1	2
EEF2K WILD-TYPE	61	58	42	33	55

'EEF2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.48

Table S4783. Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EEF2K MUTATED	2	0	0	2	1	1	2
EEF2K WILD-TYPE	34	21	48	54	38	36	18

'EEF2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.4

Table S4784. Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EEF2K MUTATED	6	1	2
EEF2K WILD-TYPE	120	95	65

'EEF2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.49

Table S4785. Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EEF2K MUTATED	4	3	1	1
EEF2K WILD-TYPE	52	102	59	67

'EEF2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S4786. Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EEF2K MUTATED	2	0	1	2	0	0
EEF2K WILD-TYPE	32	18	58	36	19	43

'EEF2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.41

Table S4787. Gene #484: 'EEF2K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EEF2K MUTATED	3	0	2
EEF2K WILD-TYPE	119	51	36

'RERE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 0.013

Table S4788. Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RERE MUTATED	0	16	2	1	2
RERE WILD-TYPE	79	110	25	42	10

Figure S1923. Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RERE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0029

Table S4789. Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RERE MUTATED	0	12	1	1
RERE WILD-TYPE	71	64	33	62

Figure S1924. Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RERE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.1

Table S4790. Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RERE MUTATED	10	2	7
RERE WILD-TYPE	68	84	78

Figure S1925. Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RERE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00248 (Fisher's exact test), Q value = 0.023

Table S4791. Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RERE MUTATED	5	5	8	1
RERE WILD-TYPE	28	73	43	86

Figure S1926. Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RERE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S4792. Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RERE MUTATED	14	0	4	3	0
RERE WILD-TYPE	51	59	38	31	57

Figure S1927. Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RERE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0045

Table S4793. Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RERE MUTATED	3	0	0	6	6	0	6
RERE WILD-TYPE	33	21	48	50	33	37	14

Figure S1928. Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RERE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0047

Table S4794. Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RERE MUTATED	18	1	2
RERE WILD-TYPE	108	95	65

Figure S1929. Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RERE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S4795. Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RERE MUTATED	16	4	0	1
RERE WILD-TYPE	40	101	60	67

Figure S1930. Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RERE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0913 (Fisher's exact test), Q value = 0.19

Table S4796. Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RERE MUTATED	1	2	6	4	0	0
RERE WILD-TYPE	33	16	53	34	19	43

'RERE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00185 (Fisher's exact test), Q value = 0.019

Table S4797. Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RERE MUTATED	6	0	7
RERE WILD-TYPE	116	51	31

Figure S1931. Get High-res Image Gene #485: 'RERE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRAM1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.35

Table S4798. Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRAM1L1 MUTATED	1	8	2	1	1
TRAM1L1 WILD-TYPE	78	118	25	42	11

'TRAM1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00105 (Fisher's exact test), Q value = 0.013

Table S4799. Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRAM1L1 MUTATED	0	8	2	0
TRAM1L1 WILD-TYPE	71	68	32	63

Figure S1932. Get High-res Image Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRAM1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.4

Table S4800. Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TRAM1L1 MUTATED	6	2	4
TRAM1L1 WILD-TYPE	72	84	81

'TRAM1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.24

Table S4801. Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TRAM1L1 MUTATED	2	1	5	4
TRAM1L1 WILD-TYPE	31	77	46	83

'TRAM1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 0.84

Table S4802. Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TRAM1L1 MUTATED	4	3	2	2	1
TRAM1L1 WILD-TYPE	61	56	40	32	56

'TRAM1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 0.73

Table S4803. Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TRAM1L1 MUTATED	2	0	1	3	3	1	2
TRAM1L1 WILD-TYPE	34	21	47	53	36	36	18

'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.6

Table S4804. Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TRAM1L1 MUTATED	8	3	2
TRAM1L1 WILD-TYPE	118	93	65

'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.56

Table S4805. Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TRAM1L1 MUTATED	4	5	3	1
TRAM1L1 WILD-TYPE	52	100	57	67

'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 0.96

Table S4806. Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TRAM1L1 MUTATED	1	1	4	2	1	1
TRAM1L1 WILD-TYPE	33	17	55	36	18	42

'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.74

Table S4807. Gene #486: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TRAM1L1 MUTATED	7	1	2
TRAM1L1 WILD-TYPE	115	50	36

'EXOSC8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.61

Table S4808. Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EXOSC8 MUTATED	0	4	0	1	0
EXOSC8 WILD-TYPE	79	122	27	42	12

'EXOSC8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.35

Table S4809. Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EXOSC8 MUTATED	0	2	1	0
EXOSC8 WILD-TYPE	71	74	33	63

'EXOSC8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.23

Table S4810. Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EXOSC8 MUTATED	3	1	0
EXOSC8 WILD-TYPE	75	85	85

'EXOSC8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.062

Table S4811. Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EXOSC8 MUTATED	2	0	2	0
EXOSC8 WILD-TYPE	31	78	49	87

Figure S1933. Get High-res Image Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EXOSC8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.12

Table S4812. Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EXOSC8 MUTATED	4	0	0	1	0
EXOSC8 WILD-TYPE	61	59	42	33	57

Figure S1934. Get High-res Image Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EXOSC8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0089 (Fisher's exact test), Q value = 0.048

Table S4813. Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EXOSC8 MUTATED	1	0	0	1	0	0	3
EXOSC8 WILD-TYPE	35	21	48	55	39	37	17

Figure S1935. Get High-res Image Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.15

Table S4814. Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EXOSC8 MUTATED	5	0	0
EXOSC8 WILD-TYPE	121	96	67

'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.4

Table S4815. Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EXOSC8 MUTATED	2	3	0	0
EXOSC8 WILD-TYPE	54	102	60	68

'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 0.19

Table S4816. Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EXOSC8 MUTATED	0	1	0	2	0	0
EXOSC8 WILD-TYPE	34	17	59	36	19	43

'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.66

Table S4817. Gene #487: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EXOSC8 MUTATED	2	0	1
EXOSC8 WILD-TYPE	120	51	37

'SUCLG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.42

Table S4818. Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SUCLG2 MUTATED	0	5	0	0	0
SUCLG2 WILD-TYPE	79	121	27	43	12

'SUCLG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.4

Table S4819. Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SUCLG2 MUTATED	0	3	0	1
SUCLG2 WILD-TYPE	71	73	34	62

'SUCLG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.17

Table S4820. Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SUCLG2 MUTATED	3	0	1
SUCLG2 WILD-TYPE	75	86	84

'SUCLG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.07

Table S4821. Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SUCLG2 MUTATED	1	0	3	0
SUCLG2 WILD-TYPE	32	78	48	87

Figure S1936. Get High-res Image Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SUCLG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00855 (Fisher's exact test), Q value = 0.048

Table S4822. Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SUCLG2 MUTATED	1	0	0	3	0
SUCLG2 WILD-TYPE	64	59	42	31	57

Figure S1937. Get High-res Image Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SUCLG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.71

Table S4823. Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SUCLG2 MUTATED	1	0	0	1	1	0	1
SUCLG2 WILD-TYPE	35	21	48	55	38	37	19

'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.15

Table S4824. Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SUCLG2 MUTATED	5	0	0
SUCLG2 WILD-TYPE	121	96	67

'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0801 (Fisher's exact test), Q value = 0.18

Table S4825. Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SUCLG2 MUTATED	3	2	0	0
SUCLG2 WILD-TYPE	53	103	60	68

'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.55

Table S4826. Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SUCLG2 MUTATED	1	1	2	0	0	0
SUCLG2 WILD-TYPE	33	17	57	38	19	43

'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.12

Table S4827. Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SUCLG2 MUTATED	1	0	3
SUCLG2 WILD-TYPE	121	51	35

Figure S1938. Get High-res Image Gene #488: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CNOT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.29

Table S4828. Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CNOT6 MUTATED	0	6	1	0	0
CNOT6 WILD-TYPE	79	120	26	43	12

'CNOT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S4829. Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CNOT6 MUTATED	0	1	2	2
CNOT6 WILD-TYPE	71	75	32	61

'CNOT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.66

Table S4830. Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CNOT6 MUTATED	3	1	3
CNOT6 WILD-TYPE	75	85	82

'CNOT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.53

Table S4831. Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CNOT6 MUTATED	1	2	3	1
CNOT6 WILD-TYPE	32	76	48	86

'CNOT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S4832. Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CNOT6 MUTATED	3	0	1	0	0
CNOT6 WILD-TYPE	62	59	41	34	57

'CNOT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.32

Table S4833. Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CNOT6 MUTATED	2	0	0	1	0	0	1
CNOT6 WILD-TYPE	34	21	48	55	39	37	19

'CNOT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.41

Table S4834. Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CNOT6 MUTATED	5	2	0
CNOT6 WILD-TYPE	121	94	67

'CNOT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.32

Table S4835. Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CNOT6 MUTATED	3	2	2	0
CNOT6 WILD-TYPE	53	103	58	68

'CNOT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.72

Table S4836. Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CNOT6 MUTATED	0	0	3	0	0	1
CNOT6 WILD-TYPE	34	18	56	38	19	42

'CNOT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 0.59

Table S4837. Gene #489: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CNOT6 MUTATED	2	2	0
CNOT6 WILD-TYPE	120	49	38

'TIGD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.22

Table S4838. Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TIGD7 MUTATED	0	7	1	0	0
TIGD7 WILD-TYPE	79	119	26	43	12

'TIGD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00309 (Fisher's exact test), Q value = 0.026

Table S4839. Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TIGD7 MUTATED	0	7	1	0
TIGD7 WILD-TYPE	71	69	33	63

Figure S1939. Get High-res Image Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TIGD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.011

Table S4840. Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TIGD7 MUTATED	6	0	0
TIGD7 WILD-TYPE	72	86	85

Figure S1940. Get High-res Image Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TIGD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.081

Table S4841. Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TIGD7 MUTATED	1	0	4	1
TIGD7 WILD-TYPE	32	78	47	86

Figure S1941. Get High-res Image Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TIGD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00123 (Fisher's exact test), Q value = 0.015

Table S4842. Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TIGD7 MUTATED	7	0	0	1	0
TIGD7 WILD-TYPE	58	59	42	33	57

Figure S1942. Get High-res Image Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TIGD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00225 (Fisher's exact test), Q value = 0.021

Table S4843. Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TIGD7 MUTATED	0	0	0	1	4	0	3
TIGD7 WILD-TYPE	36	21	48	55	35	37	17

Figure S1943. Get High-res Image Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.15

Table S4844. Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TIGD7 MUTATED	7	1	0
TIGD7 WILD-TYPE	119	95	67

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0032

Table S4845. Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TIGD7 MUTATED	7	1	0	0
TIGD7 WILD-TYPE	49	104	60	68

Figure S1944. Get High-res Image Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.53

Table S4846. Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TIGD7 MUTATED	1	1	3	3	0	0
TIGD7 WILD-TYPE	33	17	56	35	19	43

'TIGD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.37

Table S4847. Gene #490: 'TIGD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TIGD7 MUTATED	6	0	2
TIGD7 WILD-TYPE	116	51	36

'ITSN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.4

Table S4848. Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ITSN2 MUTATED	2	11	1	1	1
ITSN2 WILD-TYPE	77	115	26	42	11

'ITSN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00536 (Fisher's exact test), Q value = 0.036

Table S4849. Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ITSN2 MUTATED	0	8	2	1
ITSN2 WILD-TYPE	71	68	32	62

Figure S1945. Get High-res Image Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ITSN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.78

Table S4850. Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ITSN2 MUTATED	6	4	5
ITSN2 WILD-TYPE	72	82	80

'ITSN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.4

Table S4851. Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ITSN2 MUTATED	2	3	6	4
ITSN2 WILD-TYPE	31	75	45	83

'ITSN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0802 (Fisher's exact test), Q value = 0.18

Table S4852. Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ITSN2 MUTATED	8	2	1	3	1
ITSN2 WILD-TYPE	57	57	41	31	56

'ITSN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0268 (Fisher's exact test), Q value = 0.092

Table S4853. Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ITSN2 MUTATED	4	1	0	3	4	0	3
ITSN2 WILD-TYPE	32	20	48	53	35	37	17

Figure S1946. Get High-res Image Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITSN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.011

Table S4854. Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ITSN2 MUTATED	14	2	0
ITSN2 WILD-TYPE	112	94	67

Figure S1947. Get High-res Image Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ITSN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.002 (Fisher's exact test), Q value = 0.02

Table S4855. Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ITSN2 MUTATED	8	7	1	0
ITSN2 WILD-TYPE	48	98	59	68

Figure S1948. Get High-res Image Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ITSN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.26

Table S4856. Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ITSN2 MUTATED	1	0	6	3	0	0
ITSN2 WILD-TYPE	33	18	53	35	19	43

'ITSN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.28

Table S4857. Gene #491: 'ITSN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ITSN2 MUTATED	8	0	2
ITSN2 WILD-TYPE	114	51	36

'OGFRL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.3

Table S4858. Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OGFRL1 MUTATED	1	7	1	0	1
OGFRL1 WILD-TYPE	78	119	26	43	11

'OGFRL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.35

Table S4859. Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OGFRL1 MUTATED	1	4	1	0
OGFRL1 WILD-TYPE	70	72	33	63

'OGFRL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0033 (Fisher's exact test), Q value = 0.027

Table S4860. Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OGFRL1 MUTATED	7	0	2
OGFRL1 WILD-TYPE	71	86	83

Figure S1949. Get High-res Image Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OGFRL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0012 (Fisher's exact test), Q value = 0.014

Table S4861. Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OGFRL1 MUTATED	4	1	4	0
OGFRL1 WILD-TYPE	29	77	47	87

Figure S1950. Get High-res Image Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OGFRL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0542 (Fisher's exact test), Q value = 0.14

Table S4862. Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OGFRL1 MUTATED	6	0	1	2	1
OGFRL1 WILD-TYPE	59	59	41	32	56

'OGFRL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.25

Table S4863. Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OGFRL1 MUTATED	1	0	0	3	2	1	3
OGFRL1 WILD-TYPE	35	21	48	53	37	36	17

'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00826 (Fisher's exact test), Q value = 0.047

Table S4864. Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OGFRL1 MUTATED	9	0	1
OGFRL1 WILD-TYPE	117	96	66

Figure S1951. Get High-res Image Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00141 (Fisher's exact test), Q value = 0.016

Table S4865. Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OGFRL1 MUTATED	7	2	0	1
OGFRL1 WILD-TYPE	49	103	60	67

Figure S1952. Get High-res Image Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S4866. Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OGFRL1 MUTATED	1	1	2	2	0	0
OGFRL1 WILD-TYPE	33	17	57	36	19	43

'OGFRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S4867. Gene #492: 'OGFRL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OGFRL1 MUTATED	4	0	2
OGFRL1 WILD-TYPE	118	51	36

'KIAA1462 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.43

Table S4868. Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1462 MUTATED	4	13	0	4	1
KIAA1462 WILD-TYPE	75	113	27	39	11

'KIAA1462 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 0.16

Table S4869. Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1462 MUTATED	4	10	0	3
KIAA1462 WILD-TYPE	67	66	34	60

'KIAA1462 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 0.021

Table S4870. Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA1462 MUTATED	13	2	5
KIAA1462 WILD-TYPE	65	84	80

Figure S1953. Get High-res Image Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA1462 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.4

Table S4871. Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA1462 MUTATED	3	6	7	4
KIAA1462 WILD-TYPE	30	72	44	83

'KIAA1462 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.35

Table S4872. Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA1462 MUTATED	8	2	1	3	3
KIAA1462 WILD-TYPE	57	57	41	31	54

'KIAA1462 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S4873. Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA1462 MUTATED	3	0	1	5	3	1	4
KIAA1462 WILD-TYPE	33	21	47	51	36	36	16

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.069

Table S4874. Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA1462 MUTATED	15	2	5
KIAA1462 WILD-TYPE	111	94	62

Figure S1954. Get High-res Image Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 0.096

Table S4875. Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA1462 MUTATED	10	6	2	4
KIAA1462 WILD-TYPE	46	99	58	64

Figure S1955. Get High-res Image Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.59

Table S4876. Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA1462 MUTATED	3	2	4	5	1	1
KIAA1462 WILD-TYPE	31	16	55	33	18	42

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 0.074

Table S4877. Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA1462 MUTATED	8	1	7
KIAA1462 WILD-TYPE	114	50	31

Figure S1956. Get High-res Image Gene #493: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAP1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.5

Table S4878. Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAP1A MUTATED	2	10	2	1	0
MAP1A WILD-TYPE	77	116	25	42	12

'MAP1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.11

Table S4879. Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAP1A MUTATED	1	8	1	1
MAP1A WILD-TYPE	70	68	33	62

Figure S1957. Get High-res Image Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.011

Table S4880. Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MAP1A MUTATED	10	0	4
MAP1A WILD-TYPE	68	86	81

Figure S1958. Get High-res Image Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MAP1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00557 (Fisher's exact test), Q value = 0.036

Table S4881. Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MAP1A MUTATED	1	4	8	1
MAP1A WILD-TYPE	32	74	43	86

Figure S1959. Get High-res Image Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00327 (Fisher's exact test), Q value = 0.027

Table S4882. Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MAP1A MUTATED	9	0	3	0	2
MAP1A WILD-TYPE	56	59	39	34	55

Figure S1960. Get High-res Image Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.083

Table S4883. Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MAP1A MUTATED	2	0	0	5	4	0	3
MAP1A WILD-TYPE	34	21	48	51	35	37	17

Figure S1961. Get High-res Image Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.003 (Fisher's exact test), Q value = 0.026

Table S4884. Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MAP1A MUTATED	13	1	1
MAP1A WILD-TYPE	113	95	66

Figure S1962. Get High-res Image Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00613 (Fisher's exact test), Q value = 0.038

Table S4885. Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MAP1A MUTATED	8	4	0	3
MAP1A WILD-TYPE	48	101	60	65

Figure S1963. Get High-res Image Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S4886. Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MAP1A MUTATED	0	1	5	4	0	1
MAP1A WILD-TYPE	34	17	54	34	19	42

'MAP1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.12

Table S4887. Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MAP1A MUTATED	7	0	4
MAP1A WILD-TYPE	115	51	34

Figure S1964. Get High-res Image Gene #494: 'MAP1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NOB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.29

Table S4888. Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NOB1 MUTATED	0	5	0	1	1
NOB1 WILD-TYPE	79	121	27	42	11

'NOB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.2

Table S4889. Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NOB1 MUTATED	0	3	1	0
NOB1 WILD-TYPE	71	73	33	63

'NOB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.51

Table S4890. Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NOB1 MUTATED	2	0	2
NOB1 WILD-TYPE	76	86	83

'NOB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.45

Table S4891. Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NOB1 MUTATED	1	2	1	0
NOB1 WILD-TYPE	32	76	50	87

'NOB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.28

Table S4892. Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NOB1 MUTATED	4	1	2	0	0
NOB1 WILD-TYPE	61	58	40	34	57

'NOB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.56

Table S4893. Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NOB1 MUTATED	1	1	0	3	1	0	1
NOB1 WILD-TYPE	35	20	48	53	38	37	19

'NOB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.13

Table S4894. Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NOB1 MUTATED	6	0	1
NOB1 WILD-TYPE	120	96	66

Figure S1965. Get High-res Image Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.39

Table S4895. Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NOB1 MUTATED	3	3	0	1
NOB1 WILD-TYPE	53	102	60	67

'NOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.094

Table S4896. Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NOB1 MUTATED	0	1	0	3	0	0
NOB1 WILD-TYPE	34	17	59	35	19	43

Figure S1966. Get High-res Image Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.31

Table S4897. Gene #495: 'NOB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NOB1 MUTATED	2	0	2
NOB1 WILD-TYPE	120	51	36

'TNK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.33

Table S4898. Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TNK2 MUTATED	2	9	0	0	0
TNK2 WILD-TYPE	77	117	27	43	12

'TNK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S4899. Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TNK2 MUTATED	1	6	2	1
TNK2 WILD-TYPE	70	70	32	62

'TNK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.12

Table S4900. Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TNK2 MUTATED	5	0	4
TNK2 WILD-TYPE	73	86	81

Figure S1967. Get High-res Image Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TNK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.34

Table S4901. Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TNK2 MUTATED	1	3	4	1
TNK2 WILD-TYPE	32	75	47	86

'TNK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.13

Table S4902. Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TNK2 MUTATED	7	1	1	0	1
TNK2 WILD-TYPE	58	58	41	34	56

Figure S1968. Get High-res Image Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0348 (Fisher's exact test), Q value = 0.11

Table S4903. Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TNK2 MUTATED	0	0	1	3	1	1	4
TNK2 WILD-TYPE	36	21	47	53	38	36	16

Figure S1969. Get High-res Image Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.083

Table S4904. Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TNK2 MUTATED	7	0	4
TNK2 WILD-TYPE	119	96	63

Figure S1970. Get High-res Image Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TNK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0851 (Fisher's exact test), Q value = 0.19

Table S4905. Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TNK2 MUTATED	4	6	0	1
TNK2 WILD-TYPE	52	99	60	67

'TNK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.051

Table S4906. Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TNK2 MUTATED	2	2	0	4	0	0
TNK2 WILD-TYPE	32	16	59	34	19	43

Figure S1971. Get High-res Image Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TNK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.37

Table S4907. Gene #496: 'TNK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TNK2 MUTATED	6	0	2
TNK2 WILD-TYPE	116	51	36

'CYP7B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 0.91

Table S4908. Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CYP7B1 MUTATED	5	9	1	1	0
CYP7B1 WILD-TYPE	74	117	26	42	12

'CYP7B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S4909. Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CYP7B1 MUTATED	3	4	1	5
CYP7B1 WILD-TYPE	68	72	33	58

'CYP7B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 0.81

Table S4910. Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CYP7B1 MUTATED	6	5	4
CYP7B1 WILD-TYPE	72	81	81

'CYP7B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.59

Table S4911. Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CYP7B1 MUTATED	4	4	2	5
CYP7B1 WILD-TYPE	29	74	49	82

'CYP7B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.59

Table S4912. Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CYP7B1 MUTATED	4	4	0	2	4
CYP7B1 WILD-TYPE	61	55	42	32	53

'CYP7B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00129 (Fisher's exact test), Q value = 0.015

Table S4913. Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CYP7B1 MUTATED	6	0	0	0	2	4	2
CYP7B1 WILD-TYPE	30	21	48	56	37	33	18

Figure S1972. Get High-res Image Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.46

Table S4914. Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CYP7B1 MUTATED	6	8	2
CYP7B1 WILD-TYPE	120	88	65

'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.61

Table S4915. Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CYP7B1 MUTATED	2	4	5	5
CYP7B1 WILD-TYPE	54	101	55	63

'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 0.99

Table S4916. Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CYP7B1 MUTATED	2	1	3	2	2	3
CYP7B1 WILD-TYPE	32	17	56	36	17	40

'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.33

Table S4917. Gene #497: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CYP7B1 MUTATED	10	3	0
CYP7B1 WILD-TYPE	112	48	38

'EDNRB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.48

Table S4918. Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EDNRB MUTATED	3	14	3	4	1
EDNRB WILD-TYPE	76	112	24	39	11

'EDNRB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00309 (Fisher's exact test), Q value = 0.026

Table S4919. Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EDNRB MUTATED	2	12	1	1
EDNRB WILD-TYPE	69	64	33	62

Figure S1973. Get High-res Image Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EDNRB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.21

Table S4920. Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EDNRB MUTATED	11	4	9
EDNRB WILD-TYPE	67	82	76

'EDNRB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S4921. Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EDNRB MUTATED	2	5	15	2
EDNRB WILD-TYPE	31	73	36	85

Figure S1974. Get High-res Image Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.057

Table S4922. Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EDNRB MUTATED	10	0	3	4	4
EDNRB WILD-TYPE	55	59	39	30	53

Figure S1975. Get High-res Image Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EDNRB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.31

Table S4923. Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EDNRB MUTATED	3	1	1	7	5	1	3
EDNRB WILD-TYPE	33	20	47	49	34	36	17

'EDNRB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.0058

Table S4924. Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EDNRB MUTATED	20	2	3
EDNRB WILD-TYPE	106	94	64

Figure S1976. Get High-res Image Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.0091

Table S4925. Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EDNRB MUTATED	13	7	1	4
EDNRB WILD-TYPE	43	98	59	64

Figure S1977. Get High-res Image Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S4926. Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EDNRB MUTATED	1	4	6	2	1	1
EDNRB WILD-TYPE	33	14	53	36	18	42

'EDNRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0886 (Fisher's exact test), Q value = 0.19

Table S4927. Gene #498: 'EDNRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EDNRB MUTATED	7	2	6
EDNRB WILD-TYPE	115	49	32

'STAU2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.56

Table S4928. Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STAU2 MUTATED	1	6	1	0	0
STAU2 WILD-TYPE	78	120	26	43	12

'STAU2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.77

Table S4929. Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STAU2 MUTATED	1	1	1	0
STAU2 WILD-TYPE	70	75	33	63

'STAU2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.44

Table S4930. Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
STAU2 MUTATED	4	1	3
STAU2 WILD-TYPE	74	85	82

'STAU2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0055 (Fisher's exact test), Q value = 0.036

Table S4931. Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
STAU2 MUTATED	0	1	6	1
STAU2 WILD-TYPE	33	77	45	86

Figure S1978. Get High-res Image Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STAU2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.56

Table S4932. Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
STAU2 MUTATED	1	0	2	1	2
STAU2 WILD-TYPE	64	59	40	33	55

'STAU2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 0.69

Table S4933. Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
STAU2 MUTATED	1	0	0	1	1	2	1
STAU2 WILD-TYPE	35	21	48	55	38	35	19

'STAU2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S4934. Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
STAU2 MUTATED	5	1	2
STAU2 WILD-TYPE	121	95	65

'STAU2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 0.7

Table S4935. Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
STAU2 MUTATED	3	2	1	2
STAU2 WILD-TYPE	53	103	59	66

'STAU2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S4936. Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
STAU2 MUTATED	0	1	0	0	1	1
STAU2 WILD-TYPE	34	17	59	38	18	42

'STAU2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4937. Gene #499: 'STAU2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
STAU2 MUTATED	2	1	0
STAU2 WILD-TYPE	120	50	38

'ARHGEF17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00328 (Fisher's exact test), Q value = 0.027

Table S4938. Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARHGEF17 MUTATED	1	15	0	0	0
ARHGEF17 WILD-TYPE	78	111	27	43	12

Figure S1979. Get High-res Image Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGEF17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.087 (Fisher's exact test), Q value = 0.19

Table S4939. Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARHGEF17 MUTATED	1	8	3	3
ARHGEF17 WILD-TYPE	70	68	31	60

'ARHGEF17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S4940. Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ARHGEF17 MUTATED	6	1	4
ARHGEF17 WILD-TYPE	72	85	81

'ARHGEF17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.33

Table S4941. Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ARHGEF17 MUTATED	0	5	4	2
ARHGEF17 WILD-TYPE	33	73	47	85

'ARHGEF17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0042 (Fisher's exact test), Q value = 0.03

Table S4942. Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ARHGEF17 MUTATED	10	2	1	0	1
ARHGEF17 WILD-TYPE	55	57	41	34	56

Figure S1980. Get High-res Image Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARHGEF17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 0.14

Table S4943. Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ARHGEF17 MUTATED	3	1	1	2	3	0	4
ARHGEF17 WILD-TYPE	33	20	47	54	36	37	16

'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S4944. Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ARHGEF17 MUTATED	11	3	3
ARHGEF17 WILD-TYPE	115	93	64

'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S4945. Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ARHGEF17 MUTATED	7	6	2	2
ARHGEF17 WILD-TYPE	49	99	58	66

'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.33

Table S4946. Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ARHGEF17 MUTATED	3	0	2	6	1	2
ARHGEF17 WILD-TYPE	31	18	57	32	18	41

'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.34

Table S4947. Gene #500: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ARHGEF17 MUTATED	7	2	5
ARHGEF17 WILD-TYPE	115	49	33

'C10ORF120 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4948. Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C10ORF120 MUTATED	1	3	0	1	0
C10ORF120 WILD-TYPE	78	123	27	42	12

'C10ORF120 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 0.91

Table S4949. Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C10ORF120 MUTATED	1	2	0	0
C10ORF120 WILD-TYPE	70	74	34	63

'C10ORF120 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 0.18

Table S4950. Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C10ORF120 MUTATED	3	0	1
C10ORF120 WILD-TYPE	75	86	84

'C10ORF120 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.073

Table S4951. Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C10ORF120 MUTATED	1	0	3	0
C10ORF120 WILD-TYPE	32	78	48	87

Figure S1981. Get High-res Image Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C10ORF120 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.32

Table S4952. Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C10ORF120 MUTATED	4	0	1
C10ORF120 WILD-TYPE	122	96	66

'C10ORF120 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00398 (Fisher's exact test), Q value = 0.03

Table S4953. Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C10ORF120 MUTATED	4	0	0	1
C10ORF120 WILD-TYPE	52	105	60	67

Figure S1982. Get High-res Image Gene #501: 'C10ORF120 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.069

Table S4954. Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC45A4 MUTATED	1	14	0	1	1
SLC45A4 WILD-TYPE	78	112	27	42	11

Figure S1983. Get High-res Image Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC45A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0047

Table S4955. Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC45A4 MUTATED	0	12	1	2
SLC45A4 WILD-TYPE	71	64	33	61

Figure S1984. Get High-res Image Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC45A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 0.19

Table S4956. Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC45A4 MUTATED	8	2	6
SLC45A4 WILD-TYPE	70	84	79

'SLC45A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00383 (Fisher's exact test), Q value = 0.029

Table S4957. Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC45A4 MUTATED	4	2	8	2
SLC45A4 WILD-TYPE	29	76	43	85

Figure S1985. Get High-res Image Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 0.19

Table S4958. Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC45A4 MUTATED	9	2	1	3	2
SLC45A4 WILD-TYPE	56	57	41	31	55

'SLC45A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00135 (Fisher's exact test), Q value = 0.016

Table S4959. Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC45A4 MUTATED	4	0	1	3	3	0	6
SLC45A4 WILD-TYPE	32	21	47	53	36	37	14

Figure S1986. Get High-res Image Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.061

Table S4960. Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC45A4 MUTATED	14	2	2
SLC45A4 WILD-TYPE	112	94	65

Figure S1987. Get High-res Image Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.051

Table S4961. Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC45A4 MUTATED	8	8	1	1
SLC45A4 WILD-TYPE	48	97	59	67

Figure S1988. Get High-res Image Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 0.18

Table S4962. Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLC45A4 MUTATED	1	1	7	4	0	0
SLC45A4 WILD-TYPE	33	17	52	34	19	43

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S4963. Gene #502: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLC45A4 MUTATED	7	1	5
SLC45A4 WILD-TYPE	115	50	33

'CSNK1G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.29

Table S4964. Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CSNK1G3 MUTATED	0	6	1	0	0
CSNK1G3 WILD-TYPE	79	120	26	43	12

'CSNK1G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.31

Table S4965. Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CSNK1G3 MUTATED	0	4	1	1
CSNK1G3 WILD-TYPE	71	72	33	62

'CSNK1G3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.16

Table S4966. Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CSNK1G3 MUTATED	4	0	2
CSNK1G3 WILD-TYPE	74	86	83

'CSNK1G3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0039 (Fisher's exact test), Q value = 0.03

Table S4967. Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CSNK1G3 MUTATED	0	1	5	0
CSNK1G3 WILD-TYPE	33	77	46	87

Figure S1989. Get High-res Image Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.12

Table S4968. Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CSNK1G3 MUTATED	4	0	0	1	0
CSNK1G3 WILD-TYPE	61	59	42	33	57

Figure S1990. Get High-res Image Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S4969. Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CSNK1G3 MUTATED	1	0	0	1	2	0	1
CSNK1G3 WILD-TYPE	35	21	48	55	37	37	19

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.55

Table S4970. Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CSNK1G3 MUTATED	5	1	1
CSNK1G3 WILD-TYPE	121	95	66

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00981 (Fisher's exact test), Q value = 0.051

Table S4971. Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CSNK1G3 MUTATED	5	1	1	0
CSNK1G3 WILD-TYPE	51	104	59	68

Figure S1991. Get High-res Image Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 0.81

Table S4972. Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CSNK1G3 MUTATED	0	0	3	2	0	1
CSNK1G3 WILD-TYPE	34	18	56	36	19	42

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S4973. Gene #503: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CSNK1G3 MUTATED	2	1	3
CSNK1G3 WILD-TYPE	120	50	35

'SLFN12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.59

Table S4974. Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLFN12 MUTATED	1	6	0	0	0
SLFN12 WILD-TYPE	78	120	27	43	12

'SLFN12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.6

Table S4975. Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLFN12 MUTATED	1	4	1	1
SLFN12 WILD-TYPE	70	72	33	62

'SLFN12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.21

Table S4976. Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLFN12 MUTATED	2	0	4
SLFN12 WILD-TYPE	76	86	81

'SLFN12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.3

Table S4977. Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLFN12 MUTATED	1	3	2	0
SLFN12 WILD-TYPE	32	75	49	87

'SLFN12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S4978. Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLFN12 MUTATED	4	1	0	0	0
SLFN12 WILD-TYPE	61	58	42	34	57

'SLFN12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.3

Table S4979. Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLFN12 MUTATED	3	0	0	1	1	0	0
SLFN12 WILD-TYPE	33	21	48	55	38	37	20

'SLFN12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.18

Table S4980. Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLFN12 MUTATED	6	1	0
SLFN12 WILD-TYPE	120	95	67

'SLFN12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00846 (Fisher's exact test), Q value = 0.047

Table S4981. Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLFN12 MUTATED	5	1	1	0
SLFN12 WILD-TYPE	51	104	59	68

Figure S1992. Get High-res Image Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLFN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 0.91

Table S4982. Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLFN12 MUTATED	2	0	2	2	0	1
SLFN12 WILD-TYPE	32	18	57	36	19	42

'SLFN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0456 (Fisher's exact test), Q value = 0.13

Table S4983. Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLFN12 MUTATED	2	1	4
SLFN12 WILD-TYPE	120	50	34

Figure S1993. Get High-res Image Gene #504: 'SLFN12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00287 (Fisher's exact test), Q value = 0.025

Table S4984. Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARFGEF1 MUTATED	1	19	2	1	1
ARFGEF1 WILD-TYPE	78	107	25	42	11

Figure S1994. Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.0078

Table S4985. Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARFGEF1 MUTATED	1	13	3	1
ARFGEF1 WILD-TYPE	70	63	31	62

Figure S1995. Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.0084

Table S4986. Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ARFGEF1 MUTATED	15	2	4
ARFGEF1 WILD-TYPE	63	84	81

Figure S1996. Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S4987. Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ARFGEF1 MUTATED	5	3	12	1
ARFGEF1 WILD-TYPE	28	75	39	86

Figure S1997. Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S4988. Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ARFGEF1 MUTATED	16	1	0	5	1
ARFGEF1 WILD-TYPE	49	58	42	29	56

Figure S1998. Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S4989. Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ARFGEF1 MUTATED	4	1	0	3	8	0	7
ARFGEF1 WILD-TYPE	32	20	48	53	31	37	13

Figure S1999. Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0012

Table S4990. Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ARFGEF1 MUTATED	22	0	2
ARFGEF1 WILD-TYPE	104	96	65

Figure S2000. Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S4991. Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ARFGEF1 MUTATED	13	10	0	1
ARFGEF1 WILD-TYPE	43	95	60	67

Figure S2001. Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 0.15

Table S4992. Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ARFGEF1 MUTATED	4	3	5	4	0	0
ARFGEF1 WILD-TYPE	30	15	54	34	19	43

'ARFGEF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0045

Table S4993. Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ARFGEF1 MUTATED	7	0	9
ARFGEF1 WILD-TYPE	115	51	29

Figure S2002. Get High-res Image Gene #505: 'ARFGEF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HDLBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00715 (Fisher's exact test), Q value = 0.042

Table S4994. Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HDLBP MUTATED	1	15	1	3	3
HDLBP WILD-TYPE	78	111	26	40	9

Figure S2003. Get High-res Image Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HDLBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.15

Table S4995. Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HDLBP MUTATED	2	7	6	4
HDLBP WILD-TYPE	69	69	28	59

'HDLBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.38

Table S4996. Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HDLBP MUTATED	9	4	7
HDLBP WILD-TYPE	69	82	78

'HDLBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.38

Table S4997. Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HDLBP MUTATED	5	6	5	4
HDLBP WILD-TYPE	28	72	46	83

'HDLBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.011

Table S4998. Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HDLBP MUTATED	15	2	1	2	3
HDLBP WILD-TYPE	50	57	41	32	54

Figure S2004. Get High-res Image Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HDLBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00263 (Fisher's exact test), Q value = 0.024

Table S4999. Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HDLBP MUTATED	6	0	1	4	5	1	6
HDLBP WILD-TYPE	30	21	47	52	34	36	14

Figure S2005. Get High-res Image Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0047

Table S5000. Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HDLBP MUTATED	20	3	1
HDLBP WILD-TYPE	106	93	66

Figure S2006. Get High-res Image Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.0089

Table S5001. Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HDLBP MUTATED	12	9	2	1
HDLBP WILD-TYPE	44	96	58	67

Figure S2007. Get High-res Image Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S5002. Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HDLBP MUTATED	5	1	7	3	1	1
HDLBP WILD-TYPE	29	17	52	35	18	42

'HDLBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0527 (Fisher's exact test), Q value = 0.14

Table S5003. Gene #506: 'HDLBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HDLBP MUTATED	11	1	6
HDLBP WILD-TYPE	111	50	32

'SYCP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.12

Table S5004. Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SYCP2 MUTATED	3	13	0	0	1
SYCP2 WILD-TYPE	76	113	27	43	11

Figure S2008. Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SYCP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0771 (Fisher's exact test), Q value = 0.18

Table S5005. Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SYCP2 MUTATED	1	7	0	2
SYCP2 WILD-TYPE	70	69	34	61

'SYCP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0037

Table S5006. Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SYCP2 MUTATED	11	0	3
SYCP2 WILD-TYPE	67	86	82

Figure S2009. Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SYCP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00996 (Fisher's exact test), Q value = 0.051

Table S5007. Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SYCP2 MUTATED	3	3	7	1
SYCP2 WILD-TYPE	30	75	44	86

Figure S2010. Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SYCP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.069

Table S5008. Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SYCP2 MUTATED	9	1	1	3	1
SYCP2 WILD-TYPE	56	58	41	31	56

Figure S2011. Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SYCP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00666 (Fisher's exact test), Q value = 0.04

Table S5009. Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SYCP2 MUTATED	2	0	0	5	4	0	4
SYCP2 WILD-TYPE	34	21	48	51	35	37	16

Figure S2012. Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.0095

Table S5010. Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SYCP2 MUTATED	15	1	1
SYCP2 WILD-TYPE	111	95	66

Figure S2013. Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00041 (Fisher's exact test), Q value = 0.0073

Table S5011. Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SYCP2 MUTATED	10	5	0	2
SYCP2 WILD-TYPE	46	100	60	66

Figure S2014. Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.31

Table S5012. Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SYCP2 MUTATED	2	0	6	2	0	0
SYCP2 WILD-TYPE	32	18	53	36	19	43

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.061

Table S5013. Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SYCP2 MUTATED	5	0	5
SYCP2 WILD-TYPE	117	51	33

Figure S2015. Get High-res Image Gene #507: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TUBE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.37

Table S5014. Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TUBE1 MUTATED	0	6	0	1	0
TUBE1 WILD-TYPE	79	120	27	42	12

'TUBE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S5015. Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TUBE1 MUTATED	1	4	0	0
TUBE1 WILD-TYPE	70	72	34	63

'TUBE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00553 (Fisher's exact test), Q value = 0.036

Table S5016. Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TUBE1 MUTATED	6	1	0
TUBE1 WILD-TYPE	72	85	85

Figure S2016. Get High-res Image Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TUBE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 0.14

Table S5017. Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TUBE1 MUTATED	1	0	4	2
TUBE1 WILD-TYPE	32	78	47	85

'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0978 (Fisher's exact test), Q value = 0.2

Table S5018. Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TUBE1 MUTATED	4	0	0	0	1
TUBE1 WILD-TYPE	61	59	42	34	56

'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0946 (Fisher's exact test), Q value = 0.2

Table S5019. Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TUBE1 MUTATED	1	0	0	0	1	1	2
TUBE1 WILD-TYPE	35	21	48	56	38	36	18

'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.54

Table S5020. Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TUBE1 MUTATED	5	1	1
TUBE1 WILD-TYPE	121	95	66

'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0114 (Fisher's exact test), Q value = 0.056

Table S5021. Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TUBE1 MUTATED	5	1	0	1
TUBE1 WILD-TYPE	51	104	60	67

Figure S2017. Get High-res Image Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TUBE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S5022. Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TUBE1 MUTATED	2	0	0	2	1	0
TUBE1 WILD-TYPE	32	18	59	36	18	43

'TUBE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.41

Table S5023. Gene #508: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TUBE1 MUTATED	3	0	2
TUBE1 WILD-TYPE	119	51	36

'PTPRJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00066 (Fisher's exact test), Q value = 0.01

Table S5024. Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PTPRJ MUTATED	0	15	5	2	2
PTPRJ WILD-TYPE	79	111	22	41	10

Figure S2018. Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPRJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.054

Table S5025. Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PTPRJ MUTATED	1	11	4	3
PTPRJ WILD-TYPE	70	65	30	60

Figure S2019. Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPRJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.01

Table S5026. Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PTPRJ MUTATED	15	2	5
PTPRJ WILD-TYPE	63	84	80

Figure S2020. Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTPRJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00229 (Fisher's exact test), Q value = 0.022

Table S5027. Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PTPRJ MUTATED	6	5	9	2
PTPRJ WILD-TYPE	27	73	42	85

Figure S2021. Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S5028. Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PTPRJ MUTATED	13	0	2	5	1
PTPRJ WILD-TYPE	52	59	40	29	56

Figure S2022. Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTPRJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00267 (Fisher's exact test), Q value = 0.024

Table S5029. Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PTPRJ MUTATED	5	2	0	5	4	0	5
PTPRJ WILD-TYPE	31	19	48	51	35	37	15

Figure S2023. Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S5030. Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PTPRJ MUTATED	22	2	0
PTPRJ WILD-TYPE	104	94	67

Figure S2024. Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.0069

Table S5031. Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PTPRJ MUTATED	11	11	1	1
PTPRJ WILD-TYPE	45	94	59	67

Figure S2025. Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.065

Table S5032. Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PTPRJ MUTATED	0	2	10	4	0	1
PTPRJ WILD-TYPE	34	16	49	34	19	42

Figure S2026. Get High-res Image Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.23

Table S5033. Gene #509: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PTPRJ MUTATED	11	1	5
PTPRJ WILD-TYPE	111	50	33

'MDM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 0.61

Table S5034. Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MDM2 MUTATED	0	4	0	1	0
MDM2 WILD-TYPE	79	122	27	42	12

'MDM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.59

Table S5035. Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MDM2 MUTATED	0	2	0	2
MDM2 WILD-TYPE	71	74	34	61

'MDM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.12

Table S5036. Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MDM2 MUTATED	4	1	0
MDM2 WILD-TYPE	74	85	85

Figure S2027. Get High-res Image Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MDM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.4

Table S5037. Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MDM2 MUTATED	0	1	3	1
MDM2 WILD-TYPE	33	77	48	86

'MDM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5038. Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MDM2 MUTATED	1	1	0	0	1
MDM2 WILD-TYPE	64	58	42	34	56

'MDM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5039. Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MDM2 MUTATED	0	0	1	1	1	0	0
MDM2 WILD-TYPE	36	21	47	55	38	37	20

'MDM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.43

Table S5040. Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MDM2 MUTATED	4	1	0
MDM2 WILD-TYPE	122	95	67

'MDM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0995 (Fisher's exact test), Q value = 0.21

Table S5041. Gene #510: 'MDM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MDM2 MUTATED	3	1	1	0
MDM2 WILD-TYPE	53	104	59	68

'MZF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.12

Table S5042. Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MZF1 MUTATED	0	9	1	0	0
MZF1 WILD-TYPE	79	117	26	43	12

Figure S2028. Get High-res Image Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MZF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.42

Table S5043. Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MZF1 MUTATED	2	6	1	1
MZF1 WILD-TYPE	69	70	33	62

'MZF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.58

Table S5044. Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MZF1 MUTATED	2	2	5
MZF1 WILD-TYPE	76	84	80

'MZF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 0.89

Table S5045. Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MZF1 MUTATED	1	2	3	3
MZF1 WILD-TYPE	32	76	48	84

'MZF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.85

Table S5046. Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MZF1 MUTATED	3	1	2	1	1
MZF1 WILD-TYPE	62	58	40	33	56

'MZF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 0.82

Table S5047. Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MZF1 MUTATED	1	0	1	2	1	1	2
MZF1 WILD-TYPE	35	21	47	54	38	36	18

'MZF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.32

Table S5048. Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MZF1 MUTATED	7	1	2
MZF1 WILD-TYPE	119	95	65

'MZF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 0.84

Table S5049. Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MZF1 MUTATED	3	4	1	2
MZF1 WILD-TYPE	53	101	59	66

'MZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 0.14

Table S5050. Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MZF1 MUTATED	0	2	6	1	1	0
MZF1 WILD-TYPE	34	16	53	37	18	43

'MZF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 0.74

Table S5051. Gene #511: 'MZF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MZF1 MUTATED	7	1	2
MZF1 WILD-TYPE	115	50	36

'SIK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.42

Table S5052. Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SIK1 MUTATED	0	5	0	0	0
SIK1 WILD-TYPE	79	121	27	43	12

'SIK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S5053. Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SIK1 MUTATED	0	3	1	1
SIK1 WILD-TYPE	71	73	33	62

'SIK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S5054. Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SIK1 MUTATED	3	1	0
SIK1 WILD-TYPE	75	85	85

'SIK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5055. Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SIK1 MUTATED	0	1	1	2
SIK1 WILD-TYPE	33	77	50	85

'SIK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.56

Table S5056. Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SIK1 MUTATED	3	1	1	0	0
SIK1 WILD-TYPE	62	58	41	34	57

'SIK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S5057. Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SIK1 MUTATED	1	0	1	2	1	0	0
SIK1 WILD-TYPE	35	21	47	54	38	37	20

'SIK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.43

Table S5058. Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SIK1 MUTATED	4	1	0
SIK1 WILD-TYPE	122	95	67

'SIK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.66

Table S5059. Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SIK1 MUTATED	1	3	1	0
SIK1 WILD-TYPE	55	102	59	68

'SIK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 0.85

Table S5060. Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SIK1 MUTATED	0	1	2	1	0	1
SIK1 WILD-TYPE	34	17	57	37	19	42

'SIK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5061. Gene #512: 'SIK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SIK1 MUTATED	3	1	1
SIK1 WILD-TYPE	119	50	37

'PIGT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0863 (Fisher's exact test), Q value = 0.19

Table S5062. Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIGT MUTATED	0	6	2	0	0
PIGT WILD-TYPE	79	120	25	43	12

'PIGT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.1

Table S5063. Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIGT MUTATED	0	6	0	2
PIGT WILD-TYPE	71	70	34	61

Figure S2029. Get High-res Image Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIGT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.62

Table S5064. Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PIGT MUTATED	3	2	1
PIGT WILD-TYPE	75	84	84

'PIGT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.56

Table S5065. Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PIGT MUTATED	2	1	1	2
PIGT WILD-TYPE	31	77	50	85

'PIGT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.45

Table S5066. Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PIGT MUTATED	4	1	1	1	0
PIGT WILD-TYPE	61	58	41	33	57

'PIGT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.35

Table S5067. Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PIGT MUTATED	2	0	0	2	3	0	0
PIGT WILD-TYPE	34	21	48	54	36	37	20

'PIGT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.29

Table S5068. Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PIGT MUTATED	6	2	0
PIGT WILD-TYPE	120	94	67

'PIGT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.71

Table S5069. Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PIGT MUTATED	3	3	1	1
PIGT WILD-TYPE	53	102	59	67

'PIGT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S5070. Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PIGT MUTATED	0	2	4	1	1	0
PIGT WILD-TYPE	34	16	55	37	18	43

'PIGT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0719 (Fisher's exact test), Q value = 0.17

Table S5071. Gene #513: 'PIGT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PIGT MUTATED	3	1	4
PIGT WILD-TYPE	119	50	34

'NUPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.67

Table S5072. Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NUPL2 MUTATED	1	5	1	0	0
NUPL2 WILD-TYPE	78	121	26	43	12

'NUPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.39

Table S5073. Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NUPL2 MUTATED	1	2	2	0
NUPL2 WILD-TYPE	70	74	32	63

'NUPL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00078 (Fisher's exact test), Q value = 0.011

Table S5074. Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NUPL2 MUTATED	6	0	0
NUPL2 WILD-TYPE	72	86	85

Figure S2030. Get High-res Image Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NUPL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0345 (Fisher's exact test), Q value = 0.11

Table S5075. Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NUPL2 MUTATED	0	0	4	2
NUPL2 WILD-TYPE	33	78	47	85

Figure S2031. Get High-res Image Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NUPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0998 (Fisher's exact test), Q value = 0.21

Table S5076. Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NUPL2 MUTATED	4	0	1	1	0
NUPL2 WILD-TYPE	61	59	41	33	57

'NUPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.29

Table S5077. Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NUPL2 MUTATED	1	1	0	1	1	0	2
NUPL2 WILD-TYPE	35	20	48	55	38	37	18

'NUPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.18

Table S5078. Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NUPL2 MUTATED	6	1	0
NUPL2 WILD-TYPE	120	95	67

'NUPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.22

Table S5079. Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NUPL2 MUTATED	2	5	0	0
NUPL2 WILD-TYPE	54	100	60	68

'NUPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S5080. Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NUPL2 MUTATED	0	2	2	1	0	0
NUPL2 WILD-TYPE	34	16	57	37	19	43

'NUPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.57

Table S5081. Gene #514: 'NUPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NUPL2 MUTATED	4	0	1
NUPL2 WILD-TYPE	118	51	37

'NOS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.66

Table S5082. Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NOS3 MUTATED	2	6	0	1	1
NOS3 WILD-TYPE	77	120	27	42	11

'NOS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S5083. Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NOS3 MUTATED	0	5	1	2
NOS3 WILD-TYPE	71	71	33	61

'NOS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.44

Table S5084. Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NOS3 MUTATED	4	1	3
NOS3 WILD-TYPE	74	85	82

'NOS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00395 (Fisher's exact test), Q value = 0.03

Table S5085. Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NOS3 MUTATED	3	1	4	0
NOS3 WILD-TYPE	30	77	47	87

Figure S2032. Get High-res Image Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0028 (Fisher's exact test), Q value = 0.025

Table S5086. Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NOS3 MUTATED	4	0	0	5	1
NOS3 WILD-TYPE	61	59	42	29	56

Figure S2033. Get High-res Image Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NOS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00171 (Fisher's exact test), Q value = 0.018

Table S5087. Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NOS3 MUTATED	1	0	0	0	5	1	3
NOS3 WILD-TYPE	35	21	48	56	34	36	17

Figure S2034. Get High-res Image Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.073

Table S5088. Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NOS3 MUTATED	8	0	2
NOS3 WILD-TYPE	118	96	65

Figure S2035. Get High-res Image Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.064

Table S5089. Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NOS3 MUTATED	6	3	0	1
NOS3 WILD-TYPE	50	102	60	67

Figure S2036. Get High-res Image Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.63

Table S5090. Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NOS3 MUTATED	2	0	3	2	0	0
NOS3 WILD-TYPE	32	18	56	36	19	43

'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S5091. Gene #515: 'NOS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NOS3 MUTATED	4	0	3
NOS3 WILD-TYPE	118	51	35

'LUC7L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.74

Table S5092. Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LUC7L3 MUTATED	1	3	0	2	0
LUC7L3 WILD-TYPE	78	123	27	41	12

'LUC7L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.15

Table S5093. Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LUC7L3 MUTATED	1	5	0	0
LUC7L3 WILD-TYPE	70	71	34	63

'LUC7L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.12

Table S5094. Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LUC7L3 MUTATED	4	1	0
LUC7L3 WILD-TYPE	74	85	85

Figure S2037. Get High-res Image Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LUC7L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0741 (Fisher's exact test), Q value = 0.17

Table S5095. Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LUC7L3 MUTATED	2	0	2	1
LUC7L3 WILD-TYPE	31	78	49	86

'LUC7L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S5096. Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LUC7L3 MUTATED	3	0	0	2	1
LUC7L3 WILD-TYPE	62	59	42	32	56

'LUC7L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00942 (Fisher's exact test), Q value = 0.05

Table S5097. Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LUC7L3 MUTATED	0	0	0	1	2	0	3
LUC7L3 WILD-TYPE	36	21	48	55	37	37	17

Figure S2038. Get High-res Image Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LUC7L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.67

Table S5098. Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LUC7L3 MUTATED	4	1	1
LUC7L3 WILD-TYPE	122	95	66

'LUC7L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0344 (Fisher's exact test), Q value = 0.11

Table S5099. Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LUC7L3 MUTATED	4	1	0	1
LUC7L3 WILD-TYPE	52	104	60	67

Figure S2039. Get High-res Image Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LUC7L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.15

Table S5100. Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LUC7L3 MUTATED	2	1	0	3	0	0
LUC7L3 WILD-TYPE	32	17	59	35	19	43

'LUC7L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.07

Table S5101. Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LUC7L3 MUTATED	2	0	4
LUC7L3 WILD-TYPE	120	51	34

Figure S2040. Get High-res Image Gene #516: 'LUC7L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LINGO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 0.92

Table S5102. Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LINGO4 MUTATED	2	5	0	2	0
LINGO4 WILD-TYPE	77	121	27	41	12

'LINGO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.16

Table S5103. Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LINGO4 MUTATED	0	6	1	2
LINGO4 WILD-TYPE	71	70	33	61

'LINGO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.55

Table S5104. Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LINGO4 MUTATED	3	4	1
LINGO4 WILD-TYPE	75	82	84

'LINGO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S5105. Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LINGO4 MUTATED	2	0	2	4
LINGO4 WILD-TYPE	31	78	49	83

'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.67

Table S5106. Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LINGO4 MUTATED	4	3	0	1	2
LINGO4 WILD-TYPE	61	56	42	33	55

'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.65

Table S5107. Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LINGO4 MUTATED	2	0	2	2	2	0	2
LINGO4 WILD-TYPE	34	21	46	54	37	37	18

'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0788 (Fisher's exact test), Q value = 0.18

Table S5108. Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LINGO4 MUTATED	8	1	1
LINGO4 WILD-TYPE	118	95	66

'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.24

Table S5109. Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LINGO4 MUTATED	5	3	1	1
LINGO4 WILD-TYPE	51	102	59	67

'LINGO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 0.92

Table S5110. Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LINGO4 MUTATED	2	1	3	1	0	1
LINGO4 WILD-TYPE	32	17	56	37	19	42

'LINGO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 0.77

Table S5111. Gene #517: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LINGO4 MUTATED	5	1	2
LINGO4 WILD-TYPE	117	50	36

'CHRNB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S5112. Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CHRNB3 MUTATED	1	5	1	2	2
CHRNB3 WILD-TYPE	78	121	26	41	10

'CHRNB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.48

Table S5113. Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CHRNB3 MUTATED	0	3	1	2
CHRNB3 WILD-TYPE	71	73	33	61

'CHRNB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.81

Table S5114. Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CHRNB3 MUTATED	3	3	5
CHRNB3 WILD-TYPE	75	83	80

'CHRNB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 0.9

Table S5115. Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CHRNB3 MUTATED	1	5	2	3
CHRNB3 WILD-TYPE	32	73	49	84

'CHRNB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.66

Table S5116. Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CHRNB3 MUTATED	5	2	1	1	1
CHRNB3 WILD-TYPE	60	57	41	33	56

'CHRNB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 0.67

Table S5117. Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CHRNB3 MUTATED	2	0	1	4	2	0	1
CHRNB3 WILD-TYPE	34	21	47	52	37	37	19

'CHRNB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.11

Table S5118. Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CHRNB3 MUTATED	9	2	0
CHRNB3 WILD-TYPE	117	94	67

Figure S2041. Get High-res Image Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CHRNB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.3

Table S5119. Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CHRNB3 MUTATED	5	4	1	1
CHRNB3 WILD-TYPE	51	101	59	67

'CHRNB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 0.85

Table S5120. Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CHRNB3 MUTATED	2	0	1	1	1	1
CHRNB3 WILD-TYPE	32	18	58	37	18	42

'CHRNB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5121. Gene #518: 'CHRNB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CHRNB3 MUTATED	4	1	1
CHRNB3 WILD-TYPE	118	50	37

'NARG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 0.16

Table S5122. Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NARG2 MUTATED	0	9	0	2	0
NARG2 WILD-TYPE	79	117	27	41	12

'NARG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 0.17

Table S5123. Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NARG2 MUTATED	1	7	0	2
NARG2 WILD-TYPE	70	69	34	61

'NARG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 0.14

Table S5124. Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NARG2 MUTATED	7	1	3
NARG2 WILD-TYPE	71	85	82

'NARG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.085

Table S5125. Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NARG2 MUTATED	2	2	6	1
NARG2 WILD-TYPE	31	76	45	86

Figure S2042. Get High-res Image Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NARG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.16

Table S5126. Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NARG2 MUTATED	6	1	1	1	0
NARG2 WILD-TYPE	59	58	41	33	57

'NARG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S5127. Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NARG2 MUTATED	2	0	0	4	1	0	2
NARG2 WILD-TYPE	34	21	48	52	38	37	18

'NARG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.11

Table S5128. Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NARG2 MUTATED	9	2	0
NARG2 WILD-TYPE	117	94	67

Figure S2043. Get High-res Image Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NARG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.064

Table S5129. Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NARG2 MUTATED	6	4	1	0
NARG2 WILD-TYPE	50	101	59	68

Figure S2044. Get High-res Image Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NARG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.69

Table S5130. Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NARG2 MUTATED	1	2	2	2	0	1
NARG2 WILD-TYPE	33	16	57	36	19	42

'NARG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.087

Table S5131. Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NARG2 MUTATED	4	0	4
NARG2 WILD-TYPE	118	51	34

Figure S2045. Get High-res Image Gene #519: 'NARG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.28

Table S5132. Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FLG MUTATED	17	33	5	6	0
FLG WILD-TYPE	62	93	22	37	12

'FLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0683 (Fisher's exact test), Q value = 0.16

Table S5133. Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FLG MUTATED	15	23	4	9
FLG WILD-TYPE	56	53	30	54

'FLG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.063

Table S5134. Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FLG MUTATED	25	12	15
FLG WILD-TYPE	53	74	70

Figure S2046. Get High-res Image Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FLG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00068 (Fisher's exact test), Q value = 0.01

Table S5135. Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FLG MUTATED	12	15	17	8
FLG WILD-TYPE	21	63	34	79

Figure S2047. Get High-res Image Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.35

Table S5136. Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FLG MUTATED	20	8	8	8	12
FLG WILD-TYPE	45	51	34	26	45

'FLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00422 (Fisher's exact test), Q value = 0.031

Table S5137. Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FLG MUTATED	7	2	5	20	14	4	4
FLG WILD-TYPE	29	19	43	36	25	33	16

Figure S2048. Get High-res Image Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0058

Table S5138. Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FLG MUTATED	39	9	14
FLG WILD-TYPE	87	87	53

Figure S2049. Get High-res Image Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00317 (Fisher's exact test), Q value = 0.026

Table S5139. Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FLG MUTATED	22	19	7	14
FLG WILD-TYPE	34	86	53	54

Figure S2050. Get High-res Image Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.3

Table S5140. Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FLG MUTATED	8	4	17	7	2	4
FLG WILD-TYPE	26	14	42	31	17	39

'FLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0024

Table S5141. Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FLG MUTATED	22	3	17
FLG WILD-TYPE	100	48	21

Figure S2051. Get High-res Image Gene #520: 'FLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PCBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.32

Table S5142. Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PCBP2 MUTATED	0	3	0	0	1
PCBP2 WILD-TYPE	79	123	27	43	11

'PCBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.11

Table S5143. Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PCBP2 MUTATED	0	4	0	0
PCBP2 WILD-TYPE	71	72	34	63

Figure S2052. Get High-res Image Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.28

Table S5144. Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PCBP2 MUTATED	2	0	2	0	0
PCBP2 WILD-TYPE	63	59	40	34	57

'PCBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.51

Table S5145. Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PCBP2 MUTATED	0	0	0	2	2	0	0
PCBP2 WILD-TYPE	36	21	48	54	37	37	20

'PCBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S5146. Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PCBP2 MUTATED	4	0	0
PCBP2 WILD-TYPE	122	96	67

'PCBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0638 (Fisher's exact test), Q value = 0.16

Table S5147. Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PCBP2 MUTATED	3	1	0	0
PCBP2 WILD-TYPE	53	104	60	68

'PCBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.31

Table S5148. Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PCBP2 MUTATED	1	0	0	2	0	0
PCBP2 WILD-TYPE	33	18	59	36	19	43

'PCBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S5149. Gene #521: 'PCBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PCBP2 MUTATED	1	0	2
PCBP2 WILD-TYPE	121	51	36

'PIAS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.071

Table S5150. Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIAS3 MUTATED	0	3	0	0	2
PIAS3 WILD-TYPE	79	123	27	43	10

Figure S2053. Get High-res Image Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIAS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.069

Table S5151. Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIAS3 MUTATED	0	0	2	1
PIAS3 WILD-TYPE	71	76	32	62

Figure S2054. Get High-res Image Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIAS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.51

Table S5152. Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PIAS3 MUTATED	2	0	2
PIAS3 WILD-TYPE	76	86	83

'PIAS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S5153. Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PIAS3 MUTATED	0	3	0	1
PIAS3 WILD-TYPE	33	75	51	86

'PIAS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.088

Table S5154. Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PIAS3 MUTATED	4	0	0	0	0
PIAS3 WILD-TYPE	61	59	42	34	57

Figure S2055. Get High-res Image Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIAS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.49

Table S5155. Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PIAS3 MUTATED	1	0	0	2	0	0	1
PIAS3 WILD-TYPE	35	21	48	54	39	37	19

'PIAS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.14

Table S5156. Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PIAS3 MUTATED	5	0	0
PIAS3 WILD-TYPE	121	96	67

'PIAS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.4

Table S5157. Gene #522: 'PIAS3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PIAS3 MUTATED	2	3	0	0
PIAS3 WILD-TYPE	54	102	60	68

'SERPINA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S5158. Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SERPINA1 MUTATED	0	6	1	0	0
SERPINA1 WILD-TYPE	79	120	26	43	12

'SERPINA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5159. Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SERPINA1 MUTATED	1	1	0	1
SERPINA1 WILD-TYPE	70	75	34	62

'SERPINA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 0.94

Table S5160. Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SERPINA1 MUTATED	2	2	3
SERPINA1 WILD-TYPE	76	84	82

'SERPINA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 0.65

Table S5161. Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SERPINA1 MUTATED	0	2	3	2
SERPINA1 WILD-TYPE	33	76	48	85

'SERPINA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.16

Table S5162. Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SERPINA1 MUTATED	2	1	0	3	0
SERPINA1 WILD-TYPE	63	58	42	31	57

'SERPINA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.56

Table S5163. Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SERPINA1 MUTATED	2	0	0	2	1	0	1
SERPINA1 WILD-TYPE	34	21	48	54	38	37	19

'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.41

Table S5164. Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SERPINA1 MUTATED	5	2	0
SERPINA1 WILD-TYPE	121	94	67

'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.58

Table S5165. Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SERPINA1 MUTATED	2	3	2	0
SERPINA1 WILD-TYPE	54	102	58	68

'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5166. Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SERPINA1 MUTATED	0	0	1	1	0	1
SERPINA1 WILD-TYPE	34	18	58	37	19	42

'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.66

Table S5167. Gene #523: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SERPINA1 MUTATED	2	0	1
SERPINA1 WILD-TYPE	120	51	37

'PIWIL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.29

Table S5168. Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIWIL2 MUTATED	0	6	0	0	0
PIWIL2 WILD-TYPE	79	120	27	43	12

'PIWIL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.22

Table S5169. Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIWIL2 MUTATED	0	4	0	1
PIWIL2 WILD-TYPE	71	72	34	62

'PIWIL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 0.16

Table S5170. Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PIWIL2 MUTATED	4	0	2
PIWIL2 WILD-TYPE	74	86	83

'PIWIL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S5171. Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PIWIL2 MUTATED	1	2	3	0
PIWIL2 WILD-TYPE	32	76	48	87

'PIWIL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.12

Table S5172. Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PIWIL2 MUTATED	4	0	0	1	0
PIWIL2 WILD-TYPE	61	59	42	33	57

Figure S2056. Get High-res Image Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIWIL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.47

Table S5173. Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PIWIL2 MUTATED	2	0	0	1	2	0	0
PIWIL2 WILD-TYPE	34	21	48	55	37	37	20

'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.078

Table S5174. Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PIWIL2 MUTATED	6	0	0
PIWIL2 WILD-TYPE	120	96	67

Figure S2057. Get High-res Image Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00238 (Fisher's exact test), Q value = 0.022

Table S5175. Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PIWIL2 MUTATED	5	1	0	0
PIWIL2 WILD-TYPE	51	104	60	68

Figure S2058. Get High-res Image Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S5176. Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PIWIL2 MUTATED	3	0	2	0	0	0
PIWIL2 WILD-TYPE	31	18	57	38	19	43

'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0593 (Fisher's exact test), Q value = 0.15

Table S5177. Gene #524: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PIWIL2 MUTATED	2	0	3
PIWIL2 WILD-TYPE	120	51	35

'TMEM79 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S5178. Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TMEM79 MUTATED	0	6	0	0	0
TMEM79 WILD-TYPE	79	120	27	43	12

'TMEM79 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.063

Table S5179. Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TMEM79 MUTATED	0	5	0	0
TMEM79 WILD-TYPE	71	71	34	63

Figure S2059. Get High-res Image Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TMEM79 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.28

Table S5180. Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TMEM79 MUTATED	1	0	3
TMEM79 WILD-TYPE	77	86	82

'TMEM79 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 0.15

Table S5181. Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TMEM79 MUTATED	0	0	3	1
TMEM79 WILD-TYPE	33	78	48	86

'TMEM79 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.37

Table S5182. Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TMEM79 MUTATED	2	1	0	2	0
TMEM79 WILD-TYPE	63	58	42	32	57

'TMEM79 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 0.82

Table S5183. Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TMEM79 MUTATED	0	0	1	2	1	0	1
TMEM79 WILD-TYPE	36	21	47	54	38	37	19

'TMEM79 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.29

Table S5184. Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TMEM79 MUTATED	5	1	0
TMEM79 WILD-TYPE	121	95	67

'TMEM79 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.094

Table S5185. Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TMEM79 MUTATED	4	2	0	0
TMEM79 WILD-TYPE	52	103	60	68

Figure S2060. Get High-res Image Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TMEM79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0701 (Fisher's exact test), Q value = 0.17

Table S5186. Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TMEM79 MUTATED	0	2	2	0	0	0
TMEM79 WILD-TYPE	34	16	57	38	19	43

'TMEM79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.12

Table S5187. Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TMEM79 MUTATED	1	0	3
TMEM79 WILD-TYPE	121	51	35

Figure S2061. Get High-res Image Gene #525: 'TMEM79 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HIST1H1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.79

Table S5188. Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HIST1H1B MUTATED	1	6	1	1	0
HIST1H1B WILD-TYPE	78	120	26	42	12

'HIST1H1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.075

Table S5189. Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HIST1H1B MUTATED	1	6	0	0
HIST1H1B WILD-TYPE	70	70	34	63

Figure S2062. Get High-res Image Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIST1H1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.15

Table S5190. Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HIST1H1B MUTATED	4	0	5
HIST1H1B WILD-TYPE	74	86	80

'HIST1H1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0749 (Fisher's exact test), Q value = 0.17

Table S5191. Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HIST1H1B MUTATED	1	2	5	1
HIST1H1B WILD-TYPE	32	76	46	86

'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 0.18

Table S5192. Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HIST1H1B MUTATED	1	1	1	4	1
HIST1H1B WILD-TYPE	64	58	41	30	56

'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.604 (Fisher's exact test), Q value = 0.69

Table S5193. Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HIST1H1B MUTATED	0	0	1	2	3	1	1
HIST1H1B WILD-TYPE	36	21	47	54	36	36	19

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.26

Table S5194. Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HIST1H1B MUTATED	7	1	1
HIST1H1B WILD-TYPE	119	95	66

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.51

Table S5195. Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HIST1H1B MUTATED	3	4	0	2
HIST1H1B WILD-TYPE	53	101	60	66

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.33

Table S5196. Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HIST1H1B MUTATED	2	1	4	0	0	0
HIST1H1B WILD-TYPE	32	17	55	38	19	43

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.39

Table S5197. Gene #526: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HIST1H1B MUTATED	5	0	2
HIST1H1B WILD-TYPE	117	51	36

'FGF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.11

Table S5198. Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FGF13 MUTATED	0	9	0	0	0
FGF13 WILD-TYPE	79	117	27	43	12

Figure S2063. Get High-res Image Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FGF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.052

Table S5199. Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FGF13 MUTATED	0	2	4	1
FGF13 WILD-TYPE	71	74	30	62

Figure S2064. Get High-res Image Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FGF13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S5200. Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FGF13 MUTATED	5	1	1
FGF13 WILD-TYPE	73	85	84

'FGF13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00269 (Fisher's exact test), Q value = 0.024

Table S5201. Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FGF13 MUTATED	4	0	2	1
FGF13 WILD-TYPE	29	78	49	86

Figure S2065. Get High-res Image Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FGF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.057

Table S5202. Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FGF13 MUTATED	6	0	1	2	0
FGF13 WILD-TYPE	59	59	41	32	57

Figure S2066. Get High-res Image Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FGF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 0.14

Table S5203. Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FGF13 MUTATED	4	0	1	2	0	0	2
FGF13 WILD-TYPE	32	21	47	54	39	37	18

'FGF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.092

Table S5204. Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FGF13 MUTATED	8	1	0
FGF13 WILD-TYPE	118	95	67

Figure S2067. Get High-res Image Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FGF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.06

Table S5205. Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FGF13 MUTATED	5	4	0	0
FGF13 WILD-TYPE	51	101	60	68

Figure S2068. Get High-res Image Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FGF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.26

Table S5206. Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FGF13 MUTATED	0	2	3	2	0	0
FGF13 WILD-TYPE	34	16	56	36	19	43

'FGF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S5207. Gene #527: 'FGF13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FGF13 MUTATED	6	0	1
FGF13 WILD-TYPE	116	51	37

'SCAMP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.31

Table S5208. Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SCAMP2 MUTATED	0	4	0	1	1
SCAMP2 WILD-TYPE	79	122	27	42	11

'SCAMP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 0.2

Table S5209. Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SCAMP2 MUTATED	0	3	1	0
SCAMP2 WILD-TYPE	71	73	33	63

'SCAMP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.41

Table S5210. Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SCAMP2 MUTATED	4	1	1
SCAMP2 WILD-TYPE	74	85	84

'SCAMP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.75

Table S5211. Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SCAMP2 MUTATED	1	2	2	1
SCAMP2 WILD-TYPE	32	76	49	86

'SCAMP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.31

Table S5212. Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SCAMP2 MUTATED	3	1	0	2	0
SCAMP2 WILD-TYPE	62	58	42	32	57

'SCAMP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.12

Table S5213. Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SCAMP2 MUTATED	0	0	1	1	1	0	3
SCAMP2 WILD-TYPE	36	21	47	55	38	37	17

Figure S2069. Get High-res Image Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.55

Table S5214. Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SCAMP2 MUTATED	4	2	0
SCAMP2 WILD-TYPE	122	94	67

'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.22

Table S5215. Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SCAMP2 MUTATED	3	3	0	0
SCAMP2 WILD-TYPE	53	102	60	68

'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.54

Table S5216. Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SCAMP2 MUTATED	1	0	0	2	0	1
SCAMP2 WILD-TYPE	33	18	59	36	19	42

'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.71

Table S5217. Gene #528: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SCAMP2 MUTATED	3	0	1
SCAMP2 WILD-TYPE	119	51	37

'SLC22A16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.09

Table S5218. Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC22A16 MUTATED	0	10	1	0	0
SLC22A16 WILD-TYPE	79	116	26	43	12

Figure S2070. Get High-res Image Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC22A16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.064

Table S5219. Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC22A16 MUTATED	0	7	1	1
SLC22A16 WILD-TYPE	71	69	33	62

Figure S2071. Get High-res Image Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC22A16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.0066

Table S5220. Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC22A16 MUTATED	8	0	1
SLC22A16 WILD-TYPE	70	86	84

Figure S2072. Get High-res Image Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SLC22A16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00185 (Fisher's exact test), Q value = 0.019

Table S5221. Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC22A16 MUTATED	3	1	5	0
SLC22A16 WILD-TYPE	30	77	46	87

Figure S2073. Get High-res Image Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.092

Table S5222. Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC22A16 MUTATED	7	1	1	1	0
SLC22A16 WILD-TYPE	58	58	41	33	57

Figure S2074. Get High-res Image Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.058

Table S5223. Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC22A16 MUTATED	1	1	0	3	1	0	4
SLC22A16 WILD-TYPE	35	20	48	53	38	37	16

Figure S2075. Get High-res Image Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 0.13

Table S5224. Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC22A16 MUTATED	9	1	1
SLC22A16 WILD-TYPE	117	95	66

Figure S2076. Get High-res Image Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0195 (Fisher's exact test), Q value = 0.076

Table S5225. Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC22A16 MUTATED	6	4	0	1
SLC22A16 WILD-TYPE	50	101	60	67

Figure S2077. Get High-res Image Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.3

Table S5226. Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLC22A16 MUTATED	0	1	4	3	0	0
SLC22A16 WILD-TYPE	34	17	55	35	19	43

'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.087

Table S5227. Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLC22A16 MUTATED	4	0	4
SLC22A16 WILD-TYPE	118	51	34

Figure S2078. Get High-res Image Gene #529: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GLYR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.2

Table S5228. Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GLYR1 MUTATED	1	11	0	1	0
GLYR1 WILD-TYPE	78	115	27	42	12

'GLYR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.074

Table S5229. Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GLYR1 MUTATED	2	7	0	0
GLYR1 WILD-TYPE	69	69	34	63

Figure S2079. Get High-res Image Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GLYR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.0072

Table S5230. Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GLYR1 MUTATED	9	0	2
GLYR1 WILD-TYPE	69	86	83

Figure S2080. Get High-res Image Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GLYR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00463 (Fisher's exact test), Q value = 0.032

Table S5231. Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GLYR1 MUTATED	3	1	6	1
GLYR1 WILD-TYPE	30	77	45	86

Figure S2081. Get High-res Image Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GLYR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S5232. Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GLYR1 MUTATED	3	2	2	3	0
GLYR1 WILD-TYPE	62	57	40	31	57

'GLYR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00979 (Fisher's exact test), Q value = 0.051

Table S5233. Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GLYR1 MUTATED	2	0	0	3	1	0	4
GLYR1 WILD-TYPE	34	21	48	53	38	37	16

Figure S2082. Get High-res Image Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GLYR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.12

Table S5234. Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GLYR1 MUTATED	10	1	2
GLYR1 WILD-TYPE	116	95	65

Figure S2083. Get High-res Image Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GLYR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 0.1

Table S5235. Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GLYR1 MUTATED	5	7	0	1
GLYR1 WILD-TYPE	51	98	60	67

Figure S2084. Get High-res Image Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GLYR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.11

Table S5236. Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GLYR1 MUTATED	2	3	1	2	0	0
GLYR1 WILD-TYPE	32	15	58	36	19	43

Figure S2085. Get High-res Image Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GLYR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.37

Table S5237. Gene #530: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GLYR1 MUTATED	6	0	2
GLYR1 WILD-TYPE	116	51	36

'LRRC43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.11

Table S5238. Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LRRC43 MUTATED	0	9	0	0	0
LRRC43 WILD-TYPE	79	117	27	43	12

Figure S2086. Get High-res Image Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRRC43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.11

Table S5239. Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LRRC43 MUTATED	0	6	1	1
LRRC43 WILD-TYPE	71	70	33	62

Figure S2087. Get High-res Image Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRRC43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00321 (Fisher's exact test), Q value = 0.027

Table S5240. Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LRRC43 MUTATED	6	0	1
LRRC43 WILD-TYPE	72	86	84

Figure S2088. Get High-res Image Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LRRC43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0559 (Fisher's exact test), Q value = 0.15

Table S5241. Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LRRC43 MUTATED	2	2	3	0
LRRC43 WILD-TYPE	31	76	48	87

'LRRC43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.057

Table S5242. Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LRRC43 MUTATED	6	0	3	1	0
LRRC43 WILD-TYPE	59	59	39	33	57

Figure S2089. Get High-res Image Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LRRC43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.28

Table S5243. Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LRRC43 MUTATED	3	0	0	3	3	0	1
LRRC43 WILD-TYPE	33	21	48	53	36	37	19

'LRRC43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.055

Table S5244. Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LRRC43 MUTATED	9	1	0
LRRC43 WILD-TYPE	117	95	67

Figure S2090. Get High-res Image Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LRRC43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00142 (Fisher's exact test), Q value = 0.016

Table S5245. Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LRRC43 MUTATED	7	2	0	1
LRRC43 WILD-TYPE	49	103	60	67

Figure S2091. Get High-res Image Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LRRC43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.34

Table S5246. Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LRRC43 MUTATED	1	0	3	4	0	0
LRRC43 WILD-TYPE	33	18	56	34	19	43

'LRRC43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S5247. Gene #531: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LRRC43 MUTATED	5	0	3
LRRC43 WILD-TYPE	117	51	35

'NLRC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.006

Table S5248. Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NLRC5 MUTATED	0	17	1	0	1
NLRC5 WILD-TYPE	79	109	26	43	11

Figure S2092. Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NLRC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00236 (Fisher's exact test), Q value = 0.022

Table S5249. Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NLRC5 MUTATED	0	10	1	2
NLRC5 WILD-TYPE	71	66	33	61

Figure S2093. Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NLRC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.17

Table S5250. Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NLRC5 MUTATED	8	2	8
NLRC5 WILD-TYPE	70	84	77

'NLRC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0594 (Fisher's exact test), Q value = 0.15

Table S5251. Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NLRC5 MUTATED	3	3	8	4
NLRC5 WILD-TYPE	30	75	43	83

'NLRC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0047

Table S5252. Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NLRC5 MUTATED	11	1	1	4	0
NLRC5 WILD-TYPE	54	58	41	30	57

Figure S2094. Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NLRC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S5253. Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NLRC5 MUTATED	4	0	0	3	3	0	7
NLRC5 WILD-TYPE	32	21	48	53	36	37	13

Figure S2095. Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00641 (Fisher's exact test), Q value = 0.039

Table S5254. Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NLRC5 MUTATED	15	3	1
NLRC5 WILD-TYPE	111	93	66

Figure S2096. Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.0062

Table S5255. Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NLRC5 MUTATED	10	8	1	0
NLRC5 WILD-TYPE	46	97	59	68

Figure S2097. Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00967 (Fisher's exact test), Q value = 0.05

Table S5256. Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NLRC5 MUTATED	0	3	5	5	0	0
NLRC5 WILD-TYPE	34	15	54	33	19	43

Figure S2098. Get High-res Image Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.37

Table S5257. Gene #532: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NLRC5 MUTATED	8	1	4
NLRC5 WILD-TYPE	114	50	34

'EAF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.11

Table S5258. Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EAF2 MUTATED	0	4	0	1	2
EAF2 WILD-TYPE	79	122	27	42	10

Figure S2099. Get High-res Image Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EAF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.061

Table S5259. Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EAF2 MUTATED	0	5	0	0
EAF2 WILD-TYPE	71	71	34	63

Figure S2100. Get High-res Image Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EAF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.56

Table S5260. Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EAF2 MUTATED	3	1	1
EAF2 WILD-TYPE	75	85	84

'EAF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 0.81

Table S5261. Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EAF2 MUTATED	0	1	2	2
EAF2 WILD-TYPE	33	77	49	85

'EAF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.35

Table S5262. Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EAF2 MUTATED	4	1	1	0	0
EAF2 WILD-TYPE	61	58	41	34	57

'EAF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0764 (Fisher's exact test), Q value = 0.17

Table S5263. Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EAF2 MUTATED	1	0	0	3	0	0	2
EAF2 WILD-TYPE	35	21	48	53	39	37	18

'EAF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.18

Table S5264. Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EAF2 MUTATED	6	1	0
EAF2 WILD-TYPE	120	95	67

'EAF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00697 (Fisher's exact test), Q value = 0.041

Table S5265. Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EAF2 MUTATED	5	2	0	0
EAF2 WILD-TYPE	51	103	60	68

Figure S2101. Get High-res Image Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 0.93

Table S5266. Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EAF2 MUTATED	1	0	2	1	0	0
EAF2 WILD-TYPE	33	18	57	37	19	43

'EAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.32

Table S5267. Gene #533: 'EAF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EAF2 MUTATED	2	0	2
EAF2 WILD-TYPE	120	51	36

'PHF20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 0.91

Table S5268. Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PHF20 MUTATED	2	7	1	1	0
PHF20 WILD-TYPE	77	119	26	42	12

'PHF20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.81

Table S5269. Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PHF20 MUTATED	1	3	1	3
PHF20 WILD-TYPE	70	73	33	60

'PHF20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S5270. Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PHF20 MUTATED	5	1	3
PHF20 WILD-TYPE	73	85	82

'PHF20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0766 (Fisher's exact test), Q value = 0.17

Table S5271. Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PHF20 MUTATED	1	2	5	1
PHF20 WILD-TYPE	32	76	46	86

'PHF20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.15

Table S5272. Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PHF20 MUTATED	4	0	0	3	3
PHF20 WILD-TYPE	61	59	42	31	54

'PHF20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.39

Table S5273. Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PHF20 MUTATED	2	0	0	2	3	1	2
PHF20 WILD-TYPE	34	21	48	54	36	36	18

'PHF20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S5274. Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PHF20 MUTATED	8	1	2
PHF20 WILD-TYPE	118	95	65

'PHF20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.31

Table S5275. Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PHF20 MUTATED	4	5	0	2
PHF20 WILD-TYPE	52	100	60	66

'PHF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S5276. Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PHF20 MUTATED	2	2	3	1	0	0
PHF20 WILD-TYPE	32	16	56	37	19	43

'PHF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0241 (Fisher's exact test), Q value = 0.087

Table S5277. Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PHF20 MUTATED	4	0	4
PHF20 WILD-TYPE	118	51	34

Figure S2102. Get High-res Image Gene #534: 'PHF20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.066

Table S5278. Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
UBXN6 MUTATED	0	10	1	0	1
UBXN6 WILD-TYPE	79	116	26	43	11

Figure S2103. Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UBXN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.0041

Table S5279. Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
UBXN6 MUTATED	0	10	1	0
UBXN6 WILD-TYPE	71	66	33	63

Figure S2104. Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'UBXN6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.51

Table S5280. Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
UBXN6 MUTATED	5	2	2
UBXN6 WILD-TYPE	73	84	83

'UBXN6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0038

Table S5281. Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
UBXN6 MUTATED	6	0	2	1
UBXN6 WILD-TYPE	27	78	49	86

Figure S2105. Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.087

Table S5282. Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
UBXN6 MUTATED	7	1	1	2	0
UBXN6 WILD-TYPE	58	58	41	32	57

Figure S2106. Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0431 (Fisher's exact test), Q value = 0.12

Table S5283. Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
UBXN6 MUTATED	2	0	1	2	2	0	4
UBXN6 WILD-TYPE	34	21	47	54	37	37	16

Figure S2107. Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00603 (Fisher's exact test), Q value = 0.038

Table S5284. Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
UBXN6 MUTATED	10	0	2
UBXN6 WILD-TYPE	116	96	65

Figure S2108. Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0031

Table S5285. Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
UBXN6 MUTATED	9	2	0	1
UBXN6 WILD-TYPE	47	103	60	67

Figure S2109. Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00463 (Fisher's exact test), Q value = 0.032

Table S5286. Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
UBXN6 MUTATED	0	4	4	1	0	0
UBXN6 WILD-TYPE	34	14	55	37	19	43

Figure S2110. Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00828 (Fisher's exact test), Q value = 0.047

Table S5287. Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
UBXN6 MUTATED	4	0	5
UBXN6 WILD-TYPE	118	51	33

Figure S2111. Get High-res Image Gene #535: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF367 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.45

Table S5288. Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF367 MUTATED	0	3	1	0	0
ZNF367 WILD-TYPE	79	123	26	43	12

'ZNF367 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S5289. Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF367 MUTATED	0	3	0	0
ZNF367 WILD-TYPE	71	73	34	63

'ZNF367 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.51

Table S5290. Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZNF367 MUTATED	2	0	2
ZNF367 WILD-TYPE	76	86	83

'ZNF367 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0485 (Fisher's exact test), Q value = 0.13

Table S5291. Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZNF367 MUTATED	0	1	3	0
ZNF367 WILD-TYPE	33	77	48	87

Figure S2112. Get High-res Image Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF367 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.43

Table S5292. Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF367 MUTATED	3	1	0	0	0
ZNF367 WILD-TYPE	62	58	42	34	57

'ZNF367 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S5293. Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF367 MUTATED	1	0	0	0	1	0	2
ZNF367 WILD-TYPE	35	21	48	56	38	37	18

Figure S2113. Get High-res Image Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF367 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.65

Table S5294. Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF367 MUTATED	3	1	0
ZNF367 WILD-TYPE	123	95	67

'ZNF367 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.44

Table S5295. Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF367 MUTATED	2	1	1	0
ZNF367 WILD-TYPE	54	104	59	68

'ZNF367 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.4

Table S5296. Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZNF367 MUTATED	0	1	0	1	0	1
ZNF367 WILD-TYPE	34	17	59	37	19	42

'ZNF367 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.5

Table S5297. Gene #536: 'ZNF367 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZNF367 MUTATED	1	1	1
ZNF367 WILD-TYPE	121	50	37

'NEK8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.17

Table S5298. Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NEK8 MUTATED	1	9	0	0	1
NEK8 WILD-TYPE	78	117	27	43	11

'NEK8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.8

Table S5299. Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NEK8 MUTATED	2	5	1	2
NEK8 WILD-TYPE	69	71	33	61

'NEK8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 0.14

Table S5300. Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NEK8 MUTATED	7	1	3
NEK8 WILD-TYPE	71	85	82

'NEK8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00227 (Fisher's exact test), Q value = 0.022

Table S5301. Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NEK8 MUTATED	5	3	3	0
NEK8 WILD-TYPE	28	75	48	87

Figure S2114. Get High-res Image Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NEK8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.063

Table S5302. Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NEK8 MUTATED	6	0	1	1	0
NEK8 WILD-TYPE	59	59	41	33	57

Figure S2115. Get High-res Image Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NEK8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.3

Table S5303. Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NEK8 MUTATED	2	0	0	2	2	0	2
NEK8 WILD-TYPE	34	21	48	54	37	37	18

'NEK8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00954 (Fisher's exact test), Q value = 0.05

Table S5304. Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NEK8 MUTATED	9	0	2
NEK8 WILD-TYPE	117	96	65

Figure S2116. Get High-res Image Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NEK8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0464 (Fisher's exact test), Q value = 0.13

Table S5305. Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NEK8 MUTATED	5	5	0	1
NEK8 WILD-TYPE	51	100	60	67

Figure S2117. Get High-res Image Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NEK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S5306. Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NEK8 MUTATED	2	2	3	1	0	0
NEK8 WILD-TYPE	32	16	56	37	19	43

'NEK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.37

Table S5307. Gene #537: 'NEK8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NEK8 MUTATED	6	0	2
NEK8 WILD-TYPE	116	51	36

'ZNF292 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.012

Table S5308. Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF292 MUTATED	1	18	1	0	0
ZNF292 WILD-TYPE	78	108	26	43	12

Figure S2118. Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF292 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00847 (Fisher's exact test), Q value = 0.047

Table S5309. Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF292 MUTATED	1	11	3	2
ZNF292 WILD-TYPE	70	65	31	61

Figure S2119. Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF292 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00204 (Fisher's exact test), Q value = 0.02

Table S5310. Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZNF292 MUTATED	13	2	4
ZNF292 WILD-TYPE	65	84	81

Figure S2120. Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF292 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S5311. Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZNF292 MUTATED	2	2	13	2
ZNF292 WILD-TYPE	31	76	38	85

Figure S2121. Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S5312. Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF292 MUTATED	16	2	1	0	0
ZNF292 WILD-TYPE	49	57	41	34	57

Figure S2122. Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF292 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-04 (Fisher's exact test), Q value = 0.0084

Table S5313. Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF292 MUTATED	3	1	0	4	5	0	6
ZNF292 WILD-TYPE	33	20	48	52	34	37	14

Figure S2123. Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0031

Table S5314. Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF292 MUTATED	18	3	0
ZNF292 WILD-TYPE	108	93	67

Figure S2124. Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.0054

Table S5315. Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF292 MUTATED	11	8	2	0
ZNF292 WILD-TYPE	45	97	58	68

Figure S2125. Get High-res Image Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.31

Table S5316. Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZNF292 MUTATED	2	2	4	6	0	1
ZNF292 WILD-TYPE	32	16	55	32	19	42

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S5317. Gene #538: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZNF292 MUTATED	9	1	5
ZNF292 WILD-TYPE	113	50	33

'NT5DC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.34

Table S5318. Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NT5DC1 MUTATED	0	5	1	0	0
NT5DC1 WILD-TYPE	79	121	26	43	12

'NT5DC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.079

Table S5319. Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NT5DC1 MUTATED	0	5	1	0
NT5DC1 WILD-TYPE	71	71	33	63

Figure S2126. Get High-res Image Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NT5DC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.28

Table S5320. Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NT5DC1 MUTATED	3	0	2
NT5DC1 WILD-TYPE	75	86	83

'NT5DC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.23

Table S5321. Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NT5DC1 MUTATED	0	0	3	2
NT5DC1 WILD-TYPE	33	78	48	85

'NT5DC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.11

Table S5322. Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NT5DC1 MUTATED	5	1	0	0	0
NT5DC1 WILD-TYPE	60	58	42	34	57

Figure S2127. Get High-res Image Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NT5DC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 0.93

Table S5323. Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NT5DC1 MUTATED	1	0	1	2	2	0	0
NT5DC1 WILD-TYPE	35	21	47	54	37	37	20

'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S5324. Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NT5DC1 MUTATED	5	0	1
NT5DC1 WILD-TYPE	121	96	66

'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0355 (Fisher's exact test), Q value = 0.11

Table S5325. Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NT5DC1 MUTATED	4	1	0	1
NT5DC1 WILD-TYPE	52	104	60	67

Figure S2128. Get High-res Image Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.25

Table S5326. Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NT5DC1 MUTATED	0	2	2	2	0	0
NT5DC1 WILD-TYPE	34	16	57	36	19	43

'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0914 (Fisher's exact test), Q value = 0.2

Table S5327. Gene #539: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NT5DC1 MUTATED	3	0	3
NT5DC1 WILD-TYPE	119	51	35

'DUSP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 0.91

Table S5328. Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DUSP9 MUTATED	2	3	0	0	0
DUSP9 WILD-TYPE	77	123	27	43	12

'DUSP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.3

Table S5329. Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DUSP9 MUTATED	2	0	1	0
DUSP9 WILD-TYPE	69	76	33	63

'DUSP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S5330. Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DUSP9 MUTATED	3	1	0
DUSP9 WILD-TYPE	75	85	85

'DUSP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0179 (Fisher's exact test), Q value = 0.072

Table S5331. Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DUSP9 MUTATED	1	0	3	0
DUSP9 WILD-TYPE	32	78	48	87

Figure S2129. Get High-res Image Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S5332. Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DUSP9 MUTATED	1	0	0	2	2
DUSP9 WILD-TYPE	64	59	42	32	55

'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.3

Table S5333. Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DUSP9 MUTATED	0	0	0	1	1	1	2
DUSP9 WILD-TYPE	36	21	48	55	38	36	18

'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.37

Table S5334. Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DUSP9 MUTATED	3	0	2
DUSP9 WILD-TYPE	123	96	65

'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.77

Table S5335. Gene #540: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DUSP9 MUTATED	1	2	0	2
DUSP9 WILD-TYPE	55	103	60	66

'ABCA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 0.65

Table S5336. Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ABCA5 MUTATED	4	13	1	2	0
ABCA5 WILD-TYPE	75	113	26	41	12

'ABCA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S5337. Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ABCA5 MUTATED	2	11	1	3
ABCA5 WILD-TYPE	69	65	33	60

Figure S2130. Get High-res Image Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0996 (Fisher's exact test), Q value = 0.21

Table S5338. Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ABCA5 MUTATED	10	4	4
ABCA5 WILD-TYPE	68	82	81

'ABCA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00313 (Fisher's exact test), Q value = 0.026

Table S5339. Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ABCA5 MUTATED	1	5	10	2
ABCA5 WILD-TYPE	32	73	41	85

Figure S2131. Get High-res Image Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ABCA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.066

Table S5340. Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ABCA5 MUTATED	7	1	0	5	3
ABCA5 WILD-TYPE	58	58	42	29	54

Figure S2132. Get High-res Image Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ABCA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.43

Table S5341. Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ABCA5 MUTATED	1	1	1	5	5	1	2
ABCA5 WILD-TYPE	35	20	47	51	34	36	18

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.016

Table S5342. Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ABCA5 MUTATED	16	1	3
ABCA5 WILD-TYPE	110	95	64

Figure S2133. Get High-res Image Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.058

Table S5343. Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ABCA5 MUTATED	9	8	1	2
ABCA5 WILD-TYPE	47	97	59	66

Figure S2134. Get High-res Image Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.056

Table S5344. Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ABCA5 MUTATED	4	4	5	1	0	0
ABCA5 WILD-TYPE	30	14	54	37	19	43

Figure S2135. Get High-res Image Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 0.16

Table S5345. Gene #541: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ABCA5 MUTATED	6	2	6
ABCA5 WILD-TYPE	116	49	32

'GFOD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.37

Table S5346. Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GFOD1 MUTATED	1	9	2	1	0
GFOD1 WILD-TYPE	78	117	25	42	12

'GFOD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.7

Table S5347. Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GFOD1 MUTATED	1	4	1	3
GFOD1 WILD-TYPE	70	72	33	60

'GFOD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.094

Table S5348. Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GFOD1 MUTATED	8	1	3
GFOD1 WILD-TYPE	70	85	82

Figure S2136. Get High-res Image Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GFOD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00338 (Fisher's exact test), Q value = 0.027

Table S5349. Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GFOD1 MUTATED	4	3	5	0
GFOD1 WILD-TYPE	29	75	46	87

Figure S2137. Get High-res Image Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GFOD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.32

Table S5350. Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GFOD1 MUTATED	7	2	1	2	1
GFOD1 WILD-TYPE	58	57	41	32	56

'GFOD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0907 (Fisher's exact test), Q value = 0.19

Table S5351. Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GFOD1 MUTATED	3	0	1	3	1	1	4
GFOD1 WILD-TYPE	33	21	47	53	38	36	16

'GFOD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.11

Table S5352. Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GFOD1 MUTATED	10	1	2
GFOD1 WILD-TYPE	116	95	65

Figure S2138. Get High-res Image Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GFOD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0306 (Fisher's exact test), Q value = 0.1

Table S5353. Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GFOD1 MUTATED	5	7	0	1
GFOD1 WILD-TYPE	51	98	60	67

Figure S2139. Get High-res Image Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GFOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.53

Table S5354. Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GFOD1 MUTATED	0	1	5	2	0	1
GFOD1 WILD-TYPE	34	17	54	36	19	42

'GFOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.78

Table S5355. Gene #542: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GFOD1 MUTATED	6	1	2
GFOD1 WILD-TYPE	116	50	36

'ZNF334 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.38

Table S5356. Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF334 MUTATED	1	9	0	2	0
ZNF334 WILD-TYPE	78	117	27	41	12

'ZNF334 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.36

Table S5357. Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF334 MUTATED	1	5	2	1
ZNF334 WILD-TYPE	70	71	32	62

'ZNF334 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.066

Table S5358. Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZNF334 MUTATED	8	2	1
ZNF334 WILD-TYPE	70	84	84

Figure S2140. Get High-res Image Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF334 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0047

Table S5359. Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZNF334 MUTATED	3	0	7	1
ZNF334 WILD-TYPE	30	78	44	86

Figure S2141. Get High-res Image Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 0.17

Table S5360. Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF334 MUTATED	7	1	0	1	2
ZNF334 WILD-TYPE	58	58	42	33	55

'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00867 (Fisher's exact test), Q value = 0.048

Table S5361. Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF334 MUTATED	2	0	0	2	3	0	4
ZNF334 WILD-TYPE	34	21	48	54	36	37	16

Figure S2142. Get High-res Image Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00627 (Fisher's exact test), Q value = 0.039

Table S5362. Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF334 MUTATED	10	0	2
ZNF334 WILD-TYPE	116	96	65

Figure S2143. Get High-res Image Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00091 (Fisher's exact test), Q value = 0.012

Table S5363. Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF334 MUTATED	8	3	0	1
ZNF334 WILD-TYPE	48	102	60	67

Figure S2144. Get High-res Image Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.46

Table S5364. Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZNF334 MUTATED	3	0	3	1	0	0
ZNF334 WILD-TYPE	31	18	56	37	19	43

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S5365. Gene #543: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZNF334 MUTATED	4	0	3
ZNF334 WILD-TYPE	118	51	35

'MUT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.21

Table S5366. Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MUT MUTATED	0	5	0	0	1
MUT WILD-TYPE	79	121	27	43	11

'MUT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.15

Table S5367. Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MUT MUTATED	0	4	1	0
MUT WILD-TYPE	71	72	33	63

'MUT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00911 (Fisher's exact test), Q value = 0.049

Table S5368. Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MUT MUTATED	4	0	0
MUT WILD-TYPE	74	86	85

Figure S2145. Get High-res Image Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MUT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0589 (Fisher's exact test), Q value = 0.15

Table S5369. Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MUT MUTATED	0	0	3	1
MUT WILD-TYPE	33	78	48	86

'MUT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 0.2

Table S5370. Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MUT MUTATED	4	0	1	1	0
MUT WILD-TYPE	61	59	41	33	57

'MUT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.58

Table S5371. Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MUT MUTATED	1	0	0	2	2	0	1
MUT WILD-TYPE	35	21	48	54	37	37	19

'MUT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.079

Table S5372. Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MUT MUTATED	6	0	0
MUT WILD-TYPE	120	96	67

Figure S2146. Get High-res Image Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MUT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S5373. Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MUT MUTATED	3	3	0	0
MUT WILD-TYPE	53	102	60	68

'MUT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S5374. Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MUT MUTATED	1	1	1	1	0	0
MUT WILD-TYPE	33	17	58	37	19	43

'MUT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.71

Table S5375. Gene #544: 'MUT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MUT MUTATED	3	0	1
MUT WILD-TYPE	119	51	37

'MGST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.64

Table S5376. Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MGST2 MUTATED	0	3	0	0	0
MGST2 WILD-TYPE	79	123	27	43	12

'MGST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 0.16

Table S5377. Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MGST2 MUTATED	0	1	2	0
MGST2 WILD-TYPE	71	75	32	63

'MGST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0983 (Fisher's exact test), Q value = 0.2

Table S5378. Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MGST2 MUTATED	3	0	0	0	0
MGST2 WILD-TYPE	62	59	42	34	57

'MGST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00043 (Fisher's exact test), Q value = 0.0075

Table S5379. Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MGST2 MUTATED	0	0	0	0	0	0	3
MGST2 WILD-TYPE	36	21	48	56	39	37	17

Figure S2147. Get High-res Image Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MGST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.45

Table S5380. Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MGST2 MUTATED	3	0	0
MGST2 WILD-TYPE	123	96	67

'MGST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.36

Table S5381. Gene #545: 'MGST2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MGST2 MUTATED	2	1	0	0
MGST2 WILD-TYPE	54	104	60	68

'GPATCH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 0.84

Table S5382. Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPATCH4 MUTATED	3	4	1	0	0
GPATCH4 WILD-TYPE	76	122	26	43	12

'GPATCH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.37

Table S5383. Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPATCH4 MUTATED	2	4	0	0
GPATCH4 WILD-TYPE	69	72	34	63

'GPATCH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.29

Table S5384. Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GPATCH4 MUTATED	3	0	2
GPATCH4 WILD-TYPE	75	86	83

'GPATCH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00346 (Fisher's exact test), Q value = 0.028

Table S5385. Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GPATCH4 MUTATED	1	0	4	0
GPATCH4 WILD-TYPE	32	78	47	87

Figure S2148. Get High-res Image Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPATCH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 0.12

Table S5386. Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GPATCH4 MUTATED	5	0	0	0	3
GPATCH4 WILD-TYPE	60	59	42	34	54

Figure S2149. Get High-res Image Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPATCH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.45

Table S5387. Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GPATCH4 MUTATED	1	0	0	1	3	2	1
GPATCH4 WILD-TYPE	35	21	48	55	36	35	19

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.18

Table S5388. Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GPATCH4 MUTATED	5	0	3
GPATCH4 WILD-TYPE	121	96	64

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.06

Table S5389. Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GPATCH4 MUTATED	5	1	0	2
GPATCH4 WILD-TYPE	51	104	60	66

Figure S2150. Get High-res Image Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.33

Table S5390. Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GPATCH4 MUTATED	0	1	2	3	0	0
GPATCH4 WILD-TYPE	34	17	57	35	19	43

'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.07

Table S5391. Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GPATCH4 MUTATED	2	0	4
GPATCH4 WILD-TYPE	120	51	34

Figure S2151. Get High-res Image Gene #546: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.45

Table S5392. Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAP2K1 MUTATED	0	4	1	0	0
MAP2K1 WILD-TYPE	79	122	26	43	12

'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.97

Table S5393. Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAP2K1 MUTATED	1	2	1	1
MAP2K1 WILD-TYPE	70	74	33	62

'MAP2K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 0.81

Table S5394. Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MAP2K1 MUTATED	2	1	2
MAP2K1 WILD-TYPE	76	85	83

'MAP2K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.62

Table S5395. Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MAP2K1 MUTATED	1	1	2	1
MAP2K1 WILD-TYPE	32	77	49	86

'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.12

Table S5396. Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MAP2K1 MUTATED	4	0	0	1	0
MAP2K1 WILD-TYPE	61	59	42	33	57

Figure S2152. Get High-res Image Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0513 (Fisher's exact test), Q value = 0.14

Table S5397. Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MAP2K1 MUTATED	1	1	0	0	3	0	0
MAP2K1 WILD-TYPE	35	20	48	56	36	37	20

'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.43

Table S5398. Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MAP2K1 MUTATED	4	1	0
MAP2K1 WILD-TYPE	122	95	67

'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.56

Table S5399. Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MAP2K1 MUTATED	2	2	1	0
MAP2K1 WILD-TYPE	54	103	59	68

'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 0.84

Table S5400. Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MAP2K1 MUTATED	1	0	3	0	0	1
MAP2K1 WILD-TYPE	33	18	56	38	19	42

'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.57

Table S5401. Gene #547: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MAP2K1 MUTATED	4	0	1
MAP2K1 WILD-TYPE	118	51	37

'TCEAL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.34

Table S5402. Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TCEAL5 MUTATED	0	5	1	0	0
TCEAL5 WILD-TYPE	79	121	26	43	12

'TCEAL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S5403. Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TCEAL5 MUTATED	0	3	2	1
TCEAL5 WILD-TYPE	71	73	32	62

'TCEAL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.28

Table S5404. Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TCEAL5 MUTATED	1	0	3
TCEAL5 WILD-TYPE	77	86	82

'TCEAL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.87

Table S5405. Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TCEAL5 MUTATED	1	1	1	1
TCEAL5 WILD-TYPE	32	77	50	86

'TCEAL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.66

Table S5406. Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TCEAL5 MUTATED	3	1	1	1	0
TCEAL5 WILD-TYPE	62	58	41	33	57

'TCEAL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 0.96

Table S5407. Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TCEAL5 MUTATED	1	1	1	2	1	0	0
TCEAL5 WILD-TYPE	35	20	47	54	38	37	20

'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.22

Table S5408. Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TCEAL5 MUTATED	5	0	1
TCEAL5 WILD-TYPE	121	96	66

'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.7

Table S5409. Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TCEAL5 MUTATED	2	3	0	1
TCEAL5 WILD-TYPE	54	102	60	67

'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S5410. Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TCEAL5 MUTATED	1	2	3	0	0	0
TCEAL5 WILD-TYPE	33	16	56	38	19	43

'TCEAL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.43

Table S5411. Gene #548: 'TCEAL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TCEAL5 MUTATED	4	0	2
TCEAL5 WILD-TYPE	118	51	36

'GANAB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.12

Table S5412. Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GANAB MUTATED	0	9	1	0	0
GANAB WILD-TYPE	79	117	26	43	12

Figure S2153. Get High-res Image Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GANAB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.066

Table S5413. Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GANAB MUTATED	0	7	1	1
GANAB WILD-TYPE	71	69	33	62

Figure S2154. Get High-res Image Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GANAB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.51

Table S5414. Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GANAB MUTATED	5	2	3
GANAB WILD-TYPE	73	84	82

'GANAB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 0.15

Table S5415. Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GANAB MUTATED	2	2	5	1
GANAB WILD-TYPE	31	76	46	86

'GANAB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.066

Table S5416. Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GANAB MUTATED	7	2	0	1	0
GANAB WILD-TYPE	58	57	42	33	57

Figure S2155. Get High-res Image Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GANAB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0012 (Fisher's exact test), Q value = 0.014

Table S5417. Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GANAB MUTATED	4	0	0	1	1	0	4
GANAB WILD-TYPE	32	21	48	55	38	37	16

Figure S2156. Get High-res Image Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GANAB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.46

Table S5418. Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GANAB MUTATED	7	2	1
GANAB WILD-TYPE	119	94	66

'GANAB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0542 (Fisher's exact test), Q value = 0.14

Table S5419. Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GANAB MUTATED	5	3	2	0
GANAB WILD-TYPE	51	102	58	68

'GANAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.44

Table S5420. Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GANAB MUTATED	0	2	4	2	0	1
GANAB WILD-TYPE	34	16	55	36	19	42

'GANAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.56

Table S5421. Gene #549: 'GANAB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GANAB MUTATED	5	1	3
GANAB WILD-TYPE	117	50	35

'PIAS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.46

Table S5422. Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIAS1 MUTATED	1	8	0	1	0
PIAS1 WILD-TYPE	78	118	27	42	12

'PIAS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.62

Table S5423. Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIAS1 MUTATED	1	4	2	2
PIAS1 WILD-TYPE	70	72	32	61

'PIAS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.27

Table S5424. Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PIAS1 MUTATED	5	1	2
PIAS1 WILD-TYPE	73	85	83

'PIAS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0756 (Fisher's exact test), Q value = 0.17

Table S5425. Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PIAS1 MUTATED	2	1	4	1
PIAS1 WILD-TYPE	31	77	47	86

'PIAS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0998 (Fisher's exact test), Q value = 0.21

Table S5426. Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PIAS1 MUTATED	6	1	0	1	1
PIAS1 WILD-TYPE	59	58	42	33	56

'PIAS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.41

Table S5427. Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PIAS1 MUTATED	2	1	0	1	2	1	2
PIAS1 WILD-TYPE	34	20	48	55	37	36	18

'PIAS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.18

Table S5428. Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PIAS1 MUTATED	8	1	1
PIAS1 WILD-TYPE	118	95	66

'PIAS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S5429. Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PIAS1 MUTATED	5	3	1	1
PIAS1 WILD-TYPE	51	102	59	67

'PIAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.24

Table S5430. Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PIAS1 MUTATED	0	0	5	3	1	0
PIAS1 WILD-TYPE	34	18	54	35	18	43

'PIAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.56

Table S5431. Gene #550: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PIAS1 MUTATED	5	1	3
PIAS1 WILD-TYPE	117	50	35

'YLPM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0095 (Fisher's exact test), Q value = 0.05

Table S5432. Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
YLPM1 MUTATED	1	15	0	1	1
YLPM1 WILD-TYPE	78	111	27	42	11

Figure S2157. Get High-res Image Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'YLPM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00888 (Fisher's exact test), Q value = 0.048

Table S5433. Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
YLPM1 MUTATED	0	7	4	2
YLPM1 WILD-TYPE	71	69	30	61

Figure S2158. Get High-res Image Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'YLPM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.13

Table S5434. Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
YLPM1 MUTATED	10	3	4
YLPM1 WILD-TYPE	68	83	81

Figure S2159. Get High-res Image Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'YLPM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00673 (Fisher's exact test), Q value = 0.041

Table S5435. Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
YLPM1 MUTATED	6	2	6	3
YLPM1 WILD-TYPE	27	76	45	84

Figure S2160. Get High-res Image Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 0.18

Table S5436. Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
YLPM1 MUTATED	8	2	1	3	1
YLPM1 WILD-TYPE	57	57	41	31	56

'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00298 (Fisher's exact test), Q value = 0.026

Table S5437. Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
YLPM1 MUTATED	4	0	0	2	3	1	5
YLPM1 WILD-TYPE	32	21	48	54	36	36	15

Figure S2161. Get High-res Image Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00261 (Fisher's exact test), Q value = 0.024

Table S5438. Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
YLPM1 MUTATED	15	2	1
YLPM1 WILD-TYPE	111	94	66

Figure S2162. Get High-res Image Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00382 (Fisher's exact test), Q value = 0.029

Table S5439. Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
YLPM1 MUTATED	9	7	1	1
YLPM1 WILD-TYPE	47	98	59	67

Figure S2163. Get High-res Image Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.26

Table S5440. Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
YLPM1 MUTATED	3	0	6	3	0	0
YLPM1 WILD-TYPE	31	18	53	35	19	43

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0824 (Fisher's exact test), Q value = 0.18

Table S5441. Gene #551: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
YLPM1 MUTATED	9	0	3
YLPM1 WILD-TYPE	113	51	35

'SMAD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5442. Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SMAD7 MUTATED	1	2	0	1	0
SMAD7 WILD-TYPE	78	124	27	42	12

'SMAD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 0.9

Table S5443. Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SMAD7 MUTATED	1	2	0	0
SMAD7 WILD-TYPE	70	74	34	63

'SMAD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5444. Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SMAD7 MUTATED	1	2	1
SMAD7 WILD-TYPE	77	84	84

'SMAD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S5445. Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SMAD7 MUTATED	2	0	1	1
SMAD7 WILD-TYPE	31	78	50	86

'SMAD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 0.9

Table S5446. Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SMAD7 MUTATED	1	2	0	1	1
SMAD7 WILD-TYPE	64	57	42	33	56

'SMAD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.33

Table S5447. Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SMAD7 MUTATED	2	0	0	0	2	1	0
SMAD7 WILD-TYPE	34	21	48	56	37	36	20

'SMAD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.32

Table S5448. Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SMAD7 MUTATED	4	0	1
SMAD7 WILD-TYPE	122	96	66

'SMAD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 0.84

Table S5449. Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SMAD7 MUTATED	1	3	0	1
SMAD7 WILD-TYPE	55	102	60	67

'SMAD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0576 (Fisher's exact test), Q value = 0.15

Table S5450. Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SMAD7 MUTATED	2	1	0	0	0	0
SMAD7 WILD-TYPE	32	17	59	38	19	43

'SMAD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S5451. Gene #552: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SMAD7 MUTATED	1	0	2
SMAD7 WILD-TYPE	121	51	36

'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.37

Table S5452. Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PPARGC1B MUTATED	0	6	0	1	0
PPARGC1B WILD-TYPE	79	120	27	42	12

'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00361 (Fisher's exact test), Q value = 0.028

Table S5453. Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PPARGC1B MUTATED	0	6	0	0
PPARGC1B WILD-TYPE	71	70	34	63

Figure S2164. Get High-res Image Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PPARGC1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00281 (Fisher's exact test), Q value = 0.025

Table S5454. Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PPARGC1B MUTATED	5	0	0
PPARGC1B WILD-TYPE	73	86	85

Figure S2165. Get High-res Image Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PPARGC1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.43

Table S5455. Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PPARGC1B MUTATED	1	0	2	2
PPARGC1B WILD-TYPE	32	78	49	85

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.17

Table S5456. Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PPARGC1B MUTATED	5	1	0	1	0
PPARGC1B WILD-TYPE	60	58	42	33	57

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0027

Table S5457. Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PPARGC1B MUTATED	1	0	0	0	1	0	5
PPARGC1B WILD-TYPE	35	21	48	56	38	37	15

Figure S2166. Get High-res Image Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S5458. Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PPARGC1B MUTATED	4	2	1
PPARGC1B WILD-TYPE	122	94	66

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 0.11

Table S5459. Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PPARGC1B MUTATED	4	3	0	0
PPARGC1B WILD-TYPE	52	102	60	68

Figure S2167. Get High-res Image Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.052

Table S5460. Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PPARGC1B MUTATED	0	0	1	5	0	0
PPARGC1B WILD-TYPE	34	18	58	33	19	43

Figure S2168. Get High-res Image Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0177 (Fisher's exact test), Q value = 0.071

Table S5461. Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PPARGC1B MUTATED	2	0	4
PPARGC1B WILD-TYPE	120	51	34

Figure S2169. Get High-res Image Gene #553: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TSPYL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.33

Table S5462. Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TSPYL5 MUTATED	0	7	1	1	0
TSPYL5 WILD-TYPE	79	119	26	42	12

'TSPYL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 0.15

Table S5463. Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TSPYL5 MUTATED	0	5	2	1
TSPYL5 WILD-TYPE	71	71	32	62

'TSPYL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S5464. Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TSPYL5 MUTATED	5	1	1
TSPYL5 WILD-TYPE	73	85	84

'TSPYL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.76

Table S5465. Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TSPYL5 MUTATED	2	2	1	2
TSPYL5 WILD-TYPE	31	76	50	85

'TSPYL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.16

Table S5466. Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TSPYL5 MUTATED	6	1	1	1	0
TSPYL5 WILD-TYPE	59	58	41	33	57

'TSPYL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 0.092

Table S5467. Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TSPYL5 MUTATED	3	0	0	2	1	0	3
TSPYL5 WILD-TYPE	33	21	48	54	38	37	17

Figure S2170. Get High-res Image Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TSPYL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.092

Table S5468. Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TSPYL5 MUTATED	8	1	0
TSPYL5 WILD-TYPE	118	95	67

Figure S2171. Get High-res Image Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TSPYL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.093

Table S5469. Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TSPYL5 MUTATED	2	7	0	0
TSPYL5 WILD-TYPE	54	98	60	68

Figure S2172. Get High-res Image Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TSPYL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00627 (Fisher's exact test), Q value = 0.039

Table S5470. Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TSPYL5 MUTATED	0	2	1	5	0	0
TSPYL5 WILD-TYPE	34	16	58	33	19	43

Figure S2173. Get High-res Image Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TSPYL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.36

Table S5471. Gene #554: 'TSPYL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TSPYL5 MUTATED	6	0	2
TSPYL5 WILD-TYPE	116	51	36

'UPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.64

Table S5472. Gene #555: 'UPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
UPK2 MUTATED	0	3	0	0	0
UPK2 WILD-TYPE	79	123	27	43	12

'UPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5473. Gene #555: 'UPK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
UPK2 MUTATED	1	1	1
UPK2 WILD-TYPE	77	85	84

'UPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.48

Table S5474. Gene #555: 'UPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
UPK2 MUTATED	1	1	1	0
UPK2 WILD-TYPE	32	77	50	87

'UPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.45

Table S5475. Gene #555: 'UPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
UPK2 MUTATED	3	0	0
UPK2 WILD-TYPE	123	96	67

'UPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.36

Table S5476. Gene #555: 'UPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
UPK2 MUTATED	2	1	0	0
UPK2 WILD-TYPE	54	104	60	68

'BCKDHA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.55

Table S5477. Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BCKDHA MUTATED	1	8	1	1	0
BCKDHA WILD-TYPE	78	118	26	42	12

'BCKDHA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.27

Table S5478. Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BCKDHA MUTATED	1	6	0	2
BCKDHA WILD-TYPE	70	70	34	61

'BCKDHA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.14

Table S5479. Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BCKDHA MUTATED	7	1	3
BCKDHA WILD-TYPE	71	85	82

'BCKDHA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0257 (Fisher's exact test), Q value = 0.09

Table S5480. Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BCKDHA MUTATED	4	2	4	1
BCKDHA WILD-TYPE	29	76	47	86

Figure S2174. Get High-res Image Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BCKDHA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.4

Table S5481. Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BCKDHA MUTATED	5	2	0	2	1
BCKDHA WILD-TYPE	60	57	42	32	56

'BCKDHA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.65

Table S5482. Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BCKDHA MUTATED	2	0	1	3	3	0	1
BCKDHA WILD-TYPE	34	21	47	53	36	37	19

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.16

Table S5483. Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BCKDHA MUTATED	9	1	2
BCKDHA WILD-TYPE	117	95	65

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.004 (Fisher's exact test), Q value = 0.03

Table S5484. Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BCKDHA MUTATED	7	2	0	3
BCKDHA WILD-TYPE	49	103	60	65

Figure S2175. Get High-res Image Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.38

Table S5485. Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BCKDHA MUTATED	2	2	2	1	1	0
BCKDHA WILD-TYPE	32	16	57	37	18	43

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.087

Table S5486. Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BCKDHA MUTATED	4	0	4
BCKDHA WILD-TYPE	118	51	34

Figure S2176. Get High-res Image Gene #556: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BRD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.069

Table S5487. Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BRD3 MUTATED	0	13	1	2	0
BRD3 WILD-TYPE	79	113	26	41	12

Figure S2177. Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00998 (Fisher's exact test), Q value = 0.051

Table S5488. Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BRD3 MUTATED	0	8	3	2
BRD3 WILD-TYPE	71	68	31	61

Figure S2178. Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.078

Table S5489. Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BRD3 MUTATED	9	2	2
BRD3 WILD-TYPE	69	84	83

Figure S2179. Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BRD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00251 (Fisher's exact test), Q value = 0.023

Table S5490. Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BRD3 MUTATED	2	4	7	0
BRD3 WILD-TYPE	31	74	44	87

Figure S2180. Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BRD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S5491. Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BRD3 MUTATED	12	0	3	1	0
BRD3 WILD-TYPE	53	59	39	33	57

Figure S2181. Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00213 (Fisher's exact test), Q value = 0.021

Table S5492. Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BRD3 MUTATED	1	1	0	6	3	0	5
BRD3 WILD-TYPE	35	20	48	50	36	37	15

Figure S2182. Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0045

Table S5493. Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BRD3 MUTATED	15	1	0
BRD3 WILD-TYPE	111	95	67

Figure S2183. Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00551 (Fisher's exact test), Q value = 0.036

Table S5494. Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BRD3 MUTATED	8	6	0	2
BRD3 WILD-TYPE	48	99	60	66

Figure S2184. Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BRD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.067

Table S5495. Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BRD3 MUTATED	1	3	2	5	0	0
BRD3 WILD-TYPE	33	15	57	33	19	43

Figure S2185. Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BRD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.12

Table S5496. Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BRD3 MUTATED	7	0	4
BRD3 WILD-TYPE	115	51	34

Figure S2186. Get High-res Image Gene #557: 'BRD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.74

Table S5497. Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PNMT MUTATED	1	6	0	1	0
PNMT WILD-TYPE	78	120	27	42	12

'PNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 0.93

Table S5498. Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PNMT MUTATED	1	2	1	2
PNMT WILD-TYPE	70	74	33	61

'PNMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.69

Table S5499. Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PNMT MUTATED	4	2	2
PNMT WILD-TYPE	74	84	83

'PNMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 0.96

Table S5500. Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PNMT MUTATED	1	3	2	2
PNMT WILD-TYPE	32	75	49	85

'PNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 0.81

Table S5501. Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PNMT MUTATED	3	1	2	0	2
PNMT WILD-TYPE	62	58	40	34	55

'PNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 0.82

Table S5502. Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PNMT MUTATED	1	0	1	2	1	1	2
PNMT WILD-TYPE	35	21	47	54	38	36	18

'PNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.37

Table S5503. Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PNMT MUTATED	6	1	1
PNMT WILD-TYPE	120	95	66

'PNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.93

Table S5504. Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PNMT MUTATED	2	3	2	1
PNMT WILD-TYPE	54	102	58	67

'PNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 0.89

Table S5505. Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PNMT MUTATED	0	0	1	1	1	1
PNMT WILD-TYPE	34	18	58	37	18	42

'PNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5506. Gene #558: 'PNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PNMT MUTATED	3	1	0
PNMT WILD-TYPE	119	50	38

'IGSF21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.51

Table S5507. Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IGSF21 MUTATED	0	2	1	0	0
IGSF21 WILD-TYPE	79	124	26	43	12

'IGSF21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.7

Table S5508. Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IGSF21 MUTATED	0	2	0	1
IGSF21 WILD-TYPE	71	74	34	62

'IGSF21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.48

Table S5509. Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IGSF21 MUTATED	2	0	1	0	0
IGSF21 WILD-TYPE	63	59	41	34	57

'IGSF21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.54

Table S5510. Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IGSF21 MUTATED	1	0	0	1	0	0	1
IGSF21 WILD-TYPE	35	21	48	55	39	37	19

'IGSF21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.45

Table S5511. Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IGSF21 MUTATED	3	0	0
IGSF21 WILD-TYPE	123	96	67

'IGSF21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 0.62

Table S5512. Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IGSF21 MUTATED	1	2	0	0
IGSF21 WILD-TYPE	55	103	60	68

'IGSF21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S5513. Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IGSF21 MUTATED	0	0	3	0	0	0
IGSF21 WILD-TYPE	34	18	56	38	19	43

'IGSF21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.66

Table S5514. Gene #559: 'IGSF21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IGSF21 MUTATED	2	0	1
IGSF21 WILD-TYPE	120	51	37

'TAS2R10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.71

Table S5515. Gene #560: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TAS2R10 MUTATED	0	2	0	1	0
TAS2R10 WILD-TYPE	79	124	27	42	12

'TAS2R10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.27

Table S5516. Gene #560: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TAS2R10 MUTATED	0	3	0	0
TAS2R10 WILD-TYPE	71	73	34	63

'TAS2R10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.78

Table S5517. Gene #560: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TAS2R10 MUTATED	1	0	0	1	1
TAS2R10 WILD-TYPE	64	59	42	33	56

'TAS2R10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.58

Table S5518. Gene #560: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TAS2R10 MUTATED	0	0	0	1	2	0	0
TAS2R10 WILD-TYPE	36	21	48	55	37	37	20

'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.45

Table S5519. Gene #560: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TAS2R10 MUTATED	3	0	0
TAS2R10 WILD-TYPE	123	96	67

'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.36

Table S5520. Gene #560: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TAS2R10 MUTATED	2	1	0	0
TAS2R10 WILD-TYPE	54	104	60	68

'TNKS1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.053

Table S5521. Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TNKS1BP1 MUTATED	1	14	2	0	1
TNKS1BP1 WILD-TYPE	78	112	25	43	11

Figure S2187. Get High-res Image Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.089

Table S5522. Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TNKS1BP1 MUTATED	1	10	1	3
TNKS1BP1 WILD-TYPE	70	66	33	60

Figure S2188. Get High-res Image Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0038

Table S5523. Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TNKS1BP1 MUTATED	13	2	1
TNKS1BP1 WILD-TYPE	65	84	84

Figure S2189. Get High-res Image Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0565 (Fisher's exact test), Q value = 0.15

Table S5524. Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TNKS1BP1 MUTATED	4	4	6	2
TNKS1BP1 WILD-TYPE	29	74	45	85

'TNKS1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00441 (Fisher's exact test), Q value = 0.031

Table S5525. Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TNKS1BP1 MUTATED	9	0	4	2	1
TNKS1BP1 WILD-TYPE	56	59	38	32	56

Figure S2190. Get High-res Image Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0216 (Fisher's exact test), Q value = 0.081

Table S5526. Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TNKS1BP1 MUTATED	3	0	0	6	2	1	4
TNKS1BP1 WILD-TYPE	33	21	48	50	37	36	16

Figure S2191. Get High-res Image Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00656 (Fisher's exact test), Q value = 0.04

Table S5527. Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TNKS1BP1 MUTATED	15	3	1
TNKS1BP1 WILD-TYPE	111	93	66

Figure S2192. Get High-res Image Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S5528. Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TNKS1BP1 MUTATED	7	8	1	3
TNKS1BP1 WILD-TYPE	49	97	59	65

'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.56

Table S5529. Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TNKS1BP1 MUTATED	3	2	4	4	0	1
TNKS1BP1 WILD-TYPE	31	16	55	34	19	42

'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 0.12

Table S5530. Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TNKS1BP1 MUTATED	10	0	4
TNKS1BP1 WILD-TYPE	112	51	34

Figure S2193. Get High-res Image Gene #561: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S5531. Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIRREL2 MUTATED	1	10	1	0	0
KIRREL2 WILD-TYPE	78	116	26	43	12

'KIRREL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0384 (Fisher's exact test), Q value = 0.11

Table S5532. Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIRREL2 MUTATED	1	8	1	1
KIRREL2 WILD-TYPE	70	68	33	62

Figure S2194. Get High-res Image Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIRREL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.07

Table S5533. Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIRREL2 MUTATED	6	0	3
KIRREL2 WILD-TYPE	72	86	82

Figure S2195. Get High-res Image Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIRREL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.17

Table S5534. Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIRREL2 MUTATED	1	2	5	1
KIRREL2 WILD-TYPE	32	76	46	86

'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.34

Table S5535. Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIRREL2 MUTATED	6	1	1	2	1
KIRREL2 WILD-TYPE	59	58	41	32	56

'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 0.1

Table S5536. Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIRREL2 MUTATED	1	1	0	2	5	0	2
KIRREL2 WILD-TYPE	35	20	48	54	34	37	18

Figure S2196. Get High-res Image Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.069

Table S5537. Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIRREL2 MUTATED	10	2	0
KIRREL2 WILD-TYPE	116	94	67

Figure S2197. Get High-res Image Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00055 (Fisher's exact test), Q value = 0.0089

Table S5538. Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIRREL2 MUTATED	8	2	2	0
KIRREL2 WILD-TYPE	48	103	58	68

Figure S2198. Get High-res Image Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.5

Table S5539. Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIRREL2 MUTATED	2	1	4	3	0	0
KIRREL2 WILD-TYPE	32	17	55	35	19	43

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.003 (Fisher's exact test), Q value = 0.026

Table S5540. Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIRREL2 MUTATED	4	0	6
KIRREL2 WILD-TYPE	118	51	32

Figure S2199. Get High-res Image Gene #562: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00106 (Fisher's exact test), Q value = 0.013

Table S5541. Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NID2 MUTATED	0	16	0	1	0
NID2 WILD-TYPE	79	110	27	42	12

Figure S2200. Get High-res Image Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.12

Table S5542. Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NID2 MUTATED	1	8	0	3
NID2 WILD-TYPE	70	68	34	60

Figure S2201. Get High-res Image Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.16

Table S5543. Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NID2 MUTATED	9	2	5
NID2 WILD-TYPE	69	84	80

'NID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0725 (Fisher's exact test), Q value = 0.17

Table S5544. Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NID2 MUTATED	2	5	7	2
NID2 WILD-TYPE	31	73	44	85

'NID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00379 (Fisher's exact test), Q value = 0.029

Table S5545. Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NID2 MUTATED	9	2	3	0	0
NID2 WILD-TYPE	56	57	39	34	57

Figure S2202. Get High-res Image Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.075

Table S5546. Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NID2 MUTATED	4	0	1	4	1	0	4
NID2 WILD-TYPE	32	21	47	52	38	37	16

Figure S2203. Get High-res Image Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.007

Table S5547. Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NID2 MUTATED	15	2	0
NID2 WILD-TYPE	111	94	67

Figure S2204. Get High-res Image Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00034 (Fisher's exact test), Q value = 0.0066

Table S5548. Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NID2 MUTATED	10	5	2	0
NID2 WILD-TYPE	46	100	58	68

Figure S2205. Get High-res Image Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.78

Table S5549. Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NID2 MUTATED	1	1	5	2	0	1
NID2 WILD-TYPE	33	17	54	36	19	42

'NID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.35

Table S5550. Gene #563: 'NID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NID2 MUTATED	4	2	4
NID2 WILD-TYPE	118	49	34

'FOXQ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.64

Table S5551. Gene #564: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FOXQ1 MUTATED	0	3	0	0	0
FOXQ1 WILD-TYPE	79	123	27	43	12

'FOXQ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.48

Table S5552. Gene #564: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FOXQ1 MUTATED	2	0	1	0	0
FOXQ1 WILD-TYPE	63	59	41	34	57

'FOXQ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.11

Table S5553. Gene #564: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FOXQ1 MUTATED	0	0	0	1	0	0	2
FOXQ1 WILD-TYPE	36	21	48	55	39	37	18

Figure S2206. Get High-res Image Gene #564: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.45

Table S5554. Gene #564: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FOXQ1 MUTATED	3	0	0
FOXQ1 WILD-TYPE	123	96	67

'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.93

Table S5555. Gene #564: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FOXQ1 MUTATED	1	1	0	1
FOXQ1 WILD-TYPE	55	104	60	67

'SMAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.37

Table S5556. Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SMAD2 MUTATED	1	6	1	0	1
SMAD2 WILD-TYPE	78	120	26	43	11

'SMAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.082

Table S5557. Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SMAD2 MUTATED	0	5	1	0
SMAD2 WILD-TYPE	71	71	33	63

Figure S2207. Get High-res Image Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMAD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.85

Table S5558. Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SMAD2 MUTATED	3	2	2
SMAD2 WILD-TYPE	75	84	83

'SMAD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S5559. Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SMAD2 MUTATED	2	2	2	1
SMAD2 WILD-TYPE	31	76	49	86

'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00767 (Fisher's exact test), Q value = 0.044

Table S5560. Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SMAD2 MUTATED	3	0	1	4	0
SMAD2 WILD-TYPE	62	59	41	30	57

Figure S2208. Get High-res Image Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.09

Table S5561. Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SMAD2 MUTATED	0	0	1	1	3	0	3
SMAD2 WILD-TYPE	36	21	47	55	36	37	17

Figure S2209. Get High-res Image Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S5562. Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SMAD2 MUTATED	7	1	1
SMAD2 WILD-TYPE	119	95	66

'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.059

Table S5563. Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SMAD2 MUTATED	5	4	0	0
SMAD2 WILD-TYPE	51	101	60	68

Figure S2210. Get High-res Image Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SMAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.59

Table S5564. Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SMAD2 MUTATED	1	1	1	2	0	0
SMAD2 WILD-TYPE	33	17	58	36	19	43

'SMAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.41

Table S5565. Gene #565: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SMAD2 MUTATED	3	0	2
SMAD2 WILD-TYPE	119	51	36

'LARP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.36

Table S5566. Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LARP1 MUTATED	1	8	1	0	0
LARP1 WILD-TYPE	78	118	26	43	12

'LARP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.064

Table S5567. Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LARP1 MUTATED	0	5	2	0
LARP1 WILD-TYPE	71	71	32	63

Figure S2211. Get High-res Image Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LARP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0436 (Fisher's exact test), Q value = 0.12

Table S5568. Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LARP1 MUTATED	5	0	3
LARP1 WILD-TYPE	73	86	82

Figure S2212. Get High-res Image Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LARP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0907 (Fisher's exact test), Q value = 0.19

Table S5569. Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LARP1 MUTATED	1	4	3	0
LARP1 WILD-TYPE	32	74	48	87

'LARP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.26

Table S5570. Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LARP1 MUTATED	6	1	2	0	1
LARP1 WILD-TYPE	59	58	40	34	56

'LARP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 0.55

Table S5571. Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LARP1 MUTATED	1	1	0	3	2	1	2
LARP1 WILD-TYPE	35	20	48	53	37	36	18

'LARP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.012

Table S5572. Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LARP1 MUTATED	10	0	0
LARP1 WILD-TYPE	116	96	67

Figure S2213. Get High-res Image Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LARP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S5573. Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LARP1 MUTATED	4	5	0	1
LARP1 WILD-TYPE	52	100	60	67

'LARP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.54

Table S5574. Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LARP1 MUTATED	1	0	3	3	0	0
LARP1 WILD-TYPE	33	18	56	35	19	43

'LARP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S5575. Gene #566: 'LARP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LARP1 MUTATED	5	0	2
LARP1 WILD-TYPE	117	51	36

'FAM186B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.12

Table S5576. Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM186B MUTATED	0	9	1	0	0
FAM186B WILD-TYPE	79	117	26	43	12

Figure S2214. Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM186B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.079

Table S5577. Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAM186B MUTATED	0	5	1	0
FAM186B WILD-TYPE	71	71	33	63

Figure S2215. Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM186B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S5578. Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FAM186B MUTATED	8	0	0
FAM186B WILD-TYPE	70	86	85

Figure S2216. Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FAM186B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.0063

Table S5579. Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FAM186B MUTATED	3	0	5	0
FAM186B WILD-TYPE	30	78	46	87

Figure S2217. Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM186B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.1

Table S5580. Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FAM186B MUTATED	5	0	2	2	0
FAM186B WILD-TYPE	60	59	40	32	57

Figure S2218. Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM186B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0254 (Fisher's exact test), Q value = 0.09

Table S5581. Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FAM186B MUTATED	2	0	1	0	4	0	2
FAM186B WILD-TYPE	34	21	47	56	35	37	18

Figure S2219. Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM186B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00815 (Fisher's exact test), Q value = 0.046

Table S5582. Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FAM186B MUTATED	9	0	1
FAM186B WILD-TYPE	117	96	66

Figure S2220. Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM186B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S5583. Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FAM186B MUTATED	9	1	0	0
FAM186B WILD-TYPE	47	104	60	68

Figure S2221. Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM186B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.68

Table S5584. Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FAM186B MUTATED	1	1	2	2	0	0
FAM186B WILD-TYPE	33	17	57	36	19	43

'FAM186B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.012

Table S5585. Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FAM186B MUTATED	1	0	5
FAM186B WILD-TYPE	121	51	33

Figure S2222. Get High-res Image Gene #567: 'FAM186B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TBC1D23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.21

Table S5586. Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TBC1D23 MUTATED	0	2	1	0	1
TBC1D23 WILD-TYPE	79	124	26	43	11

'TBC1D23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.77

Table S5587. Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TBC1D23 MUTATED	1	1	1	0
TBC1D23 WILD-TYPE	70	75	33	63

'TBC1D23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.17

Table S5588. Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TBC1D23 MUTATED	3	0	1
TBC1D23 WILD-TYPE	75	86	84

'TBC1D23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0477 (Fisher's exact test), Q value = 0.13

Table S5589. Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TBC1D23 MUTATED	0	1	3	0
TBC1D23 WILD-TYPE	33	77	48	87

Figure S2223. Get High-res Image Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TBC1D23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.51

Table S5590. Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TBC1D23 MUTATED	1	0	1	1	0
TBC1D23 WILD-TYPE	64	59	41	33	57

'TBC1D23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.76

Table S5591. Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TBC1D23 MUTATED	0	0	0	2	1	0	0
TBC1D23 WILD-TYPE	36	21	48	54	38	37	20

'TBC1D23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.65

Table S5592. Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TBC1D23 MUTATED	3	1	0
TBC1D23 WILD-TYPE	123	95	67

'TBC1D23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.44

Table S5593. Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TBC1D23 MUTATED	2	1	1	0
TBC1D23 WILD-TYPE	54	104	59	68

'TBC1D23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.36

Table S5594. Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TBC1D23 MUTATED	1	1	0	0	0	1
TBC1D23 WILD-TYPE	33	17	59	38	19	42

'TBC1D23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.12

Table S5595. Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TBC1D23 MUTATED	0	1	2
TBC1D23 WILD-TYPE	122	50	36

Figure S2224. Get High-res Image Gene #568: 'TBC1D23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'UGP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S5596. Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
UGP2 MUTATED	0	7	0	0	0
UGP2 WILD-TYPE	79	119	27	43	12

'UGP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0516 (Fisher's exact test), Q value = 0.14

Table S5597. Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
UGP2 MUTATED	0	5	0	1
UGP2 WILD-TYPE	71	71	34	62

'UGP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.41

Table S5598. Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
UGP2 MUTATED	4	1	1
UGP2 WILD-TYPE	74	85	84

'UGP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.26

Table S5599. Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
UGP2 MUTATED	1	0	3	2
UGP2 WILD-TYPE	32	78	48	85

'UGP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00747 (Fisher's exact test), Q value = 0.044

Table S5600. Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
UGP2 MUTATED	5	0	0	0	0
UGP2 WILD-TYPE	60	59	42	34	57

Figure S2225. Get High-res Image Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'UGP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00873 (Fisher's exact test), Q value = 0.048

Table S5601. Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
UGP2 MUTATED	1	0	0	1	0	0	3
UGP2 WILD-TYPE	35	21	48	55	39	37	17

Figure S2226. Get High-res Image Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UGP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.41

Table S5602. Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
UGP2 MUTATED	5	2	0
UGP2 WILD-TYPE	121	94	67

'UGP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0821 (Fisher's exact test), Q value = 0.18

Table S5603. Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
UGP2 MUTATED	4	2	1	0
UGP2 WILD-TYPE	52	103	59	68

'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.55

Table S5604. Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
UGP2 MUTATED	1	0	2	3	0	0
UGP2 WILD-TYPE	33	18	57	35	19	43

'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S5605. Gene #569: 'UGP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
UGP2 MUTATED	3	1	2
UGP2 WILD-TYPE	119	50	36

'FBN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.1

Table S5606. Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FBN3 MUTATED	2	17	4	3	2
FBN3 WILD-TYPE	77	109	23	40	10

Figure S2227. Get High-res Image Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.064

Table S5607. Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FBN3 MUTATED	3	13	3	2
FBN3 WILD-TYPE	68	63	31	61

Figure S2228. Get High-res Image Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FBN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.15

Table S5608. Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FBN3 MUTATED	13	5	6
FBN3 WILD-TYPE	65	81	79

'FBN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00156 (Fisher's exact test), Q value = 0.017

Table S5609. Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FBN3 MUTATED	2	4	13	5
FBN3 WILD-TYPE	31	74	38	82

Figure S2229. Get High-res Image Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.0079

Table S5610. Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FBN3 MUTATED	15	2	1	6	3
FBN3 WILD-TYPE	50	57	41	28	54

Figure S2230. Get High-res Image Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S5611. Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FBN3 MUTATED	1	1	1	3	11	2	8
FBN3 WILD-TYPE	35	20	47	53	28	35	12

Figure S2231. Get High-res Image Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.0092

Table S5612. Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FBN3 MUTATED	22	4	2
FBN3 WILD-TYPE	104	92	65

Figure S2232. Get High-res Image Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S5613. Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FBN3 MUTATED	15	10	1	2
FBN3 WILD-TYPE	41	95	59	66

Figure S2233. Get High-res Image Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S5614. Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FBN3 MUTATED	5	1	6	6	0	1
FBN3 WILD-TYPE	29	17	53	32	19	42

'FBN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.39

Table S5615. Gene #570: 'FBN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FBN3 MUTATED	12	2	5
FBN3 WILD-TYPE	110	49	33

'IK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.67

Table S5616. Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IK MUTATED	1	5	0	0	0
IK WILD-TYPE	78	121	27	43	12

'IK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5617. Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IK MUTATED	1	2	0	1
IK WILD-TYPE	70	74	34	62

'IK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S5618. Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IK MUTATED	3	0	3
IK WILD-TYPE	75	86	82

'IK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S5619. Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IK MUTATED	0	2	3	1
IK WILD-TYPE	33	76	48	86

'IK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5620. Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IK MUTATED	2	1	1	1	1
IK WILD-TYPE	63	58	41	33	56

'IK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 0.95

Table S5621. Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IK MUTATED	0	0	1	2	1	1	1
IK WILD-TYPE	36	21	47	54	38	36	19

'IK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.74

Table S5622. Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IK MUTATED	3	1	2
IK WILD-TYPE	123	95	65

'IK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.064

Table S5623. Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IK MUTATED	3	0	0	3
IK WILD-TYPE	53	105	60	65

Figure S2234. Get High-res Image Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.62

Table S5624. Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IK MUTATED	0	1	1	1	0	0
IK WILD-TYPE	34	17	58	37	19	43

'IK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 0.82

Table S5625. Gene #571: 'IK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IK MUTATED	3	0	0
IK WILD-TYPE	119	51	38

'FAHD2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.42

Table S5626. Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAHD2B MUTATED	0	5	0	0	0
FAHD2B WILD-TYPE	79	121	27	43	12

'FAHD2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S5627. Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FAHD2B MUTATED	0	3	0	0
FAHD2B WILD-TYPE	71	73	34	63

'FAHD2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.28

Table S5628. Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FAHD2B MUTATED	3	0	2
FAHD2B WILD-TYPE	75	86	83

'FAHD2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 0.15

Table S5629. Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FAHD2B MUTATED	1	1	3	0
FAHD2B WILD-TYPE	32	77	48	87

'FAHD2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 0.17

Table S5630. Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FAHD2B MUTATED	4	0	1	0	0
FAHD2B WILD-TYPE	61	59	41	34	57

'FAHD2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S5631. Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FAHD2B MUTATED	1	0	0	2	1	0	1
FAHD2B WILD-TYPE	35	21	48	54	38	37	19

'FAHD2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.15

Table S5632. Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FAHD2B MUTATED	5	0	0
FAHD2B WILD-TYPE	121	96	67

'FAHD2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00404 (Fisher's exact test), Q value = 0.03

Table S5633. Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FAHD2B MUTATED	4	0	0	1
FAHD2B WILD-TYPE	52	105	60	67

Figure S2235. Get High-res Image Gene #572: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.74

Table S5634. Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPC4 MUTATED	1	6	0	1	0
GPC4 WILD-TYPE	78	120	27	42	12

'GPC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.12

Table S5635. Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPC4 MUTATED	1	6	1	0
GPC4 WILD-TYPE	70	70	33	63

Figure S2236. Get High-res Image Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 0.94

Table S5636. Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GPC4 MUTATED	2	2	3
GPC4 WILD-TYPE	76	84	82

'GPC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0564 (Fisher's exact test), Q value = 0.15

Table S5637. Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GPC4 MUTATED	2	2	3	0
GPC4 WILD-TYPE	31	76	48	87

'GPC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.094

Table S5638. Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GPC4 MUTATED	4	0	2	3	0
GPC4 WILD-TYPE	61	59	40	31	57

Figure S2237. Get High-res Image Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00535 (Fisher's exact test), Q value = 0.036

Table S5639. Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GPC4 MUTATED	0	0	0	2	4	0	3
GPC4 WILD-TYPE	36	21	48	54	35	37	17

Figure S2238. Get High-res Image Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00194 (Fisher's exact test), Q value = 0.02

Table S5640. Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GPC4 MUTATED	9	0	0
GPC4 WILD-TYPE	117	96	67

Figure S2239. Get High-res Image Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0288 (Fisher's exact test), Q value = 0.095

Table S5641. Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GPC4 MUTATED	4	5	0	0
GPC4 WILD-TYPE	52	100	60	68

Figure S2240. Get High-res Image Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S5642. Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GPC4 MUTATED	2	2	1	3	0	0
GPC4 WILD-TYPE	32	16	58	35	19	43

'GPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.087

Table S5643. Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GPC4 MUTATED	4	0	4
GPC4 WILD-TYPE	118	51	34

Figure S2241. Get High-res Image Gene #573: 'GPC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CLGN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.31

Table S5644. Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CLGN MUTATED	0	7	0	1	0
CLGN WILD-TYPE	79	119	27	42	12

'CLGN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S5645. Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CLGN MUTATED	0	4	0	1
CLGN WILD-TYPE	71	72	34	62

'CLGN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.051

Table S5646. Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CLGN MUTATED	6	0	2
CLGN WILD-TYPE	72	86	83

Figure S2242. Get High-res Image Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CLGN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 0.056

Table S5647. Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CLGN MUTATED	1	2	5	0
CLGN WILD-TYPE	32	76	46	87

Figure S2243. Get High-res Image Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CLGN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S5648. Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CLGN MUTATED	3	2	0	2	0
CLGN WILD-TYPE	62	57	42	32	57

'CLGN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0621 (Fisher's exact test), Q value = 0.15

Table S5649. Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CLGN MUTATED	3	0	0	1	1	0	2
CLGN WILD-TYPE	33	21	48	55	38	37	18

'CLGN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 0.15

Table S5650. Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CLGN MUTATED	7	1	0
CLGN WILD-TYPE	119	95	67

'CLGN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.21

Table S5651. Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CLGN MUTATED	4	3	1	0
CLGN WILD-TYPE	52	102	59	68

'CLGN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 0.91

Table S5652. Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CLGN MUTATED	0	0	3	1	0	1
CLGN WILD-TYPE	34	18	56	37	19	42

'CLGN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.49

Table S5653. Gene #574: 'CLGN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CLGN MUTATED	2	1	2
CLGN WILD-TYPE	120	50	36

'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00195 (Fisher's exact test), Q value = 0.02

Table S5654. Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NF1 MUTATED	2	17	5	0	1
NF1 WILD-TYPE	77	109	22	43	11

Figure S2244. Get High-res Image Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00318 (Fisher's exact test), Q value = 0.026

Table S5655. Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NF1 MUTATED	1	9	5	1
NF1 WILD-TYPE	70	67	29	62

Figure S2245. Get High-res Image Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S5656. Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NF1 MUTATED	11	4	7
NF1 WILD-TYPE	67	82	78

'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00298 (Fisher's exact test), Q value = 0.026

Table S5657. Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NF1 MUTATED	4	3	11	4
NF1 WILD-TYPE	29	75	40	83

Figure S2246. Get High-res Image Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.25

Table S5658. Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NF1 MUTATED	10	3	3	4	2
NF1 WILD-TYPE	55	56	39	30	55

'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.0087

Table S5659. Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NF1 MUTATED	4	0	1	3	6	1	7
NF1 WILD-TYPE	32	21	47	53	33	36	13

Figure S2247. Get High-res Image Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.064

Table S5660. Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NF1 MUTATED	18	4	3
NF1 WILD-TYPE	108	92	64

Figure S2248. Get High-res Image Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0256 (Fisher's exact test), Q value = 0.09

Table S5661. Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NF1 MUTATED	10	10	3	2
NF1 WILD-TYPE	46	95	57	66

Figure S2249. Get High-res Image Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.57

Table S5662. Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NF1 MUTATED	2	2	6	2	0	1
NF1 WILD-TYPE	32	16	53	36	19	42

'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 0.8

Table S5663. Gene #575: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NF1 MUTATED	8	2	3
NF1 WILD-TYPE	114	49	35

'LCE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.22

Table S5664. Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LCE1A MUTATED	1	0	0	2	0
LCE1A WILD-TYPE	78	126	27	41	12

'LCE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 0.83

Table S5665. Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LCE1A MUTATED	2	1	0	0
LCE1A WILD-TYPE	69	75	34	63

'LCE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 0.83

Table S5666. Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LCE1A MUTATED	0	2	1
LCE1A WILD-TYPE	78	84	84

'LCE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S5667. Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LCE1A MUTATED	0	3	0	0
LCE1A WILD-TYPE	33	75	51	87

'LCE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 0.86

Table S5668. Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LCE1A MUTATED	0	1	1	0	1
LCE1A WILD-TYPE	65	58	41	34	56

'LCE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 0.99

Table S5669. Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LCE1A MUTATED	0	0	1	1	0	1	0
LCE1A WILD-TYPE	36	21	47	55	39	36	20

'LCE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.21

Table S5670. Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LCE1A MUTATED	0	1	2
LCE1A WILD-TYPE	126	95	65

'LCE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.095

Table S5671. Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LCE1A MUTATED	0	0	0	3
LCE1A WILD-TYPE	56	105	60	65

Figure S2250. Get High-res Image Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LCE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.33

Table S5672. Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LCE1A MUTATED	2	0	0	0	0	1
LCE1A WILD-TYPE	32	18	59	38	19	42

'LCE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.5

Table S5673. Gene #576: 'LCE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LCE1A MUTATED	1	1	1
LCE1A WILD-TYPE	121	50	37

'NBN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.37

Table S5674. Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NBN MUTATED	1	9	2	1	0
NBN WILD-TYPE	78	117	25	42	12

'NBN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.31

Table S5675. Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NBN MUTATED	3	5	1	0
NBN WILD-TYPE	68	71	33	63

'NBN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S5676. Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NBN MUTATED	6	2	3
NBN WILD-TYPE	72	84	82

'NBN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.75

Table S5677. Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NBN MUTATED	1	3	4	3
NBN WILD-TYPE	32	75	47	84

'NBN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 0.8

Table S5678. Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NBN MUTATED	3	3	3	2	1
NBN WILD-TYPE	62	56	39	32	56

'NBN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S5679. Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NBN MUTATED	3	0	0	6	1	1	1
NBN WILD-TYPE	33	21	48	50	38	36	19

'NBN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.29

Table S5680. Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NBN MUTATED	9	3	1
NBN WILD-TYPE	117	93	66

'NBN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 0.87

Table S5681. Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NBN MUTATED	3	6	2	2
NBN WILD-TYPE	53	99	58	66

'NBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.27

Table S5682. Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NBN MUTATED	1	3	1	2	1	1
NBN WILD-TYPE	33	15	58	36	18	42

'NBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0945 (Fisher's exact test), Q value = 0.2

Table S5683. Gene #577: 'NBN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NBN MUTATED	3	2	4
NBN WILD-TYPE	119	49	34

'PRKAR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.42

Table S5684. Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRKAR1B MUTATED	0	5	0	0	0
PRKAR1B WILD-TYPE	79	121	27	43	12

'PRKAR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.16

Table S5685. Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRKAR1B MUTATED	0	2	2	0
PRKAR1B WILD-TYPE	71	74	32	63

'PRKAR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.76

Table S5686. Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PRKAR1B MUTATED	2	1	1
PRKAR1B WILD-TYPE	76	85	84

'PRKAR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.27

Table S5687. Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PRKAR1B MUTATED	1	1	2	0
PRKAR1B WILD-TYPE	32	77	49	87

'PRKAR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.17

Table S5688. Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PRKAR1B MUTATED	4	0	1	0	0
PRKAR1B WILD-TYPE	61	59	41	34	57

'PRKAR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0822 (Fisher's exact test), Q value = 0.18

Table S5689. Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PRKAR1B MUTATED	0	1	0	1	1	0	2
PRKAR1B WILD-TYPE	36	20	48	55	38	37	18

'PRKAR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.32

Table S5690. Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PRKAR1B MUTATED	4	0	1
PRKAR1B WILD-TYPE	122	96	66

'PRKAR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.62

Table S5691. Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PRKAR1B MUTATED	2	2	0	1
PRKAR1B WILD-TYPE	54	103	60	67

'PRKAR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.12

Table S5692. Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PRKAR1B MUTATED	0	0	0	3	0	0
PRKAR1B WILD-TYPE	34	18	59	35	19	43

Figure S2251. Get High-res Image Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PRKAR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.66

Table S5693. Gene #578: 'PRKAR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PRKAR1B MUTATED	2	0	1
PRKAR1B WILD-TYPE	120	51	37

'PPP1R13B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.32

Table S5694. Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PPP1R13B MUTATED	1	7	2	0	0
PPP1R13B WILD-TYPE	78	119	25	43	12

'PPP1R13B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.42

Table S5695. Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PPP1R13B MUTATED	0	2	1	3
PPP1R13B WILD-TYPE	71	74	33	60

'PPP1R13B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.77

Table S5696. Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PPP1R13B MUTATED	3	2	4
PPP1R13B WILD-TYPE	75	84	81

'PPP1R13B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.1

Table S5697. Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PPP1R13B MUTATED	3	5	0	1
PPP1R13B WILD-TYPE	30	73	51	86

Figure S2252. Get High-res Image Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PPP1R13B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.82

Table S5698. Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PPP1R13B MUTATED	3	2	3	1	1
PPP1R13B WILD-TYPE	62	57	39	33	56

'PPP1R13B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.39

Table S5699. Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PPP1R13B MUTATED	4	0	1	3	1	0	1
PPP1R13B WILD-TYPE	32	21	47	53	38	37	19

'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.18

Table S5700. Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PPP1R13B MUTATED	8	1	1
PPP1R13B WILD-TYPE	118	95	66

'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S5701. Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PPP1R13B MUTATED	1	7	0	2
PPP1R13B WILD-TYPE	55	98	60	66

'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.56

Table S5702. Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PPP1R13B MUTATED	0	0	3	1	1	0
PPP1R13B WILD-TYPE	34	18	56	37	18	43

'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.35

Table S5703. Gene #579: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PPP1R13B MUTATED	5	0	0
PPP1R13B WILD-TYPE	117	51	38

'PHACTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.14

Table S5704. Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PHACTR1 MUTATED	0	7	1	0	1
PHACTR1 WILD-TYPE	79	119	26	43	11

'PHACTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.47

Table S5705. Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PHACTR1 MUTATED	0	3	1	1
PHACTR1 WILD-TYPE	71	73	33	62

'PHACTR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 0.2

Table S5706. Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PHACTR1 MUTATED	6	1	2
PHACTR1 WILD-TYPE	72	85	83

'PHACTR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0836 (Fisher's exact test), Q value = 0.18

Table S5707. Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PHACTR1 MUTATED	1	1	5	2
PHACTR1 WILD-TYPE	32	77	46	85

'PHACTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0959 (Fisher's exact test), Q value = 0.2

Table S5708. Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PHACTR1 MUTATED	2	2	0	3	0
PHACTR1 WILD-TYPE	63	57	42	31	57

'PHACTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S5709. Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PHACTR1 MUTATED	2	0	0	1	2	0	2
PHACTR1 WILD-TYPE	34	21	48	55	37	37	18

'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.3

Table S5710. Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PHACTR1 MUTATED	6	3	0
PHACTR1 WILD-TYPE	120	93	67

'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.5

Table S5711. Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PHACTR1 MUTATED	4	3	1	1
PHACTR1 WILD-TYPE	52	102	59	67

'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 0.98

Table S5712. Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PHACTR1 MUTATED	1	0	1	1	1	1
PHACTR1 WILD-TYPE	33	18	58	37	18	42

'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.49

Table S5713. Gene #580: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PHACTR1 MUTATED	2	1	2
PHACTR1 WILD-TYPE	120	50	36

'DHRS9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S5714. Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DHRS9 MUTATED	3	5	0	0	1
DHRS9 WILD-TYPE	76	121	27	43	11

'DHRS9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 0.13

Table S5715. Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DHRS9 MUTATED	0	3	2	0
DHRS9 WILD-TYPE	71	73	32	63

Figure S2253. Get High-res Image Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DHRS9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00966 (Fisher's exact test), Q value = 0.05

Table S5716. Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DHRS9 MUTATED	6	0	2
DHRS9 WILD-TYPE	72	86	83

Figure S2254. Get High-res Image Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DHRS9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.38

Table S5717. Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DHRS9 MUTATED	2	2	3	1
DHRS9 WILD-TYPE	31	76	48	86

'DHRS9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00166 (Fisher's exact test), Q value = 0.018

Table S5718. Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DHRS9 MUTATED	6	0	0	3	0
DHRS9 WILD-TYPE	59	59	42	31	57

Figure S2255. Get High-res Image Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DHRS9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.066 (Fisher's exact test), Q value = 0.16

Table S5719. Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DHRS9 MUTATED	1	1	0	2	2	0	3
DHRS9 WILD-TYPE	35	20	48	54	37	37	17

'DHRS9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.26

Table S5720. Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DHRS9 MUTATED	7	1	1
DHRS9 WILD-TYPE	119	95	66

'DHRS9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.095

Table S5721. Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DHRS9 MUTATED	4	5	0	0
DHRS9 WILD-TYPE	52	100	60	68

Figure S2256. Get High-res Image Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DHRS9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.62

Table S5722. Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DHRS9 MUTATED	0	0	2	2	0	0
DHRS9 WILD-TYPE	34	18	57	36	19	43

'DHRS9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.71

Table S5723. Gene #581: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DHRS9 MUTATED	3	0	1
DHRS9 WILD-TYPE	119	51	37

'PRICKLE4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S5724. Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PRICKLE4 MUTATED	0	4	1	0	1
PRICKLE4 WILD-TYPE	79	122	26	43	11

'PRICKLE4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5725. Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PRICKLE4 MUTATED	1	1	0	1
PRICKLE4 WILD-TYPE	70	75	34	62

'PRICKLE4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0679 (Fisher's exact test), Q value = 0.16

Table S5726. Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PRICKLE4 MUTATED	4	0	2
PRICKLE4 WILD-TYPE	74	86	83

'PRICKLE4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.21

Table S5727. Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PRICKLE4 MUTATED	2	2	2	0
PRICKLE4 WILD-TYPE	31	76	49	87

'PRICKLE4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S5728. Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PRICKLE4 MUTATED	2	1	3	0	0
PRICKLE4 WILD-TYPE	63	58	39	34	57

'PRICKLE4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0812 (Fisher's exact test), Q value = 0.18

Table S5729. Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PRICKLE4 MUTATED	3	0	0	3	0	0	0
PRICKLE4 WILD-TYPE	33	21	48	53	39	37	20

'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.078

Table S5730. Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PRICKLE4 MUTATED	6	0	0
PRICKLE4 WILD-TYPE	120	96	67

Figure S2257. Get High-res Image Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S5731. Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PRICKLE4 MUTATED	1	5	0	0
PRICKLE4 WILD-TYPE	55	100	60	68

'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.45

Table S5732. Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PRICKLE4 MUTATED	0	1	2	0	0	0
PRICKLE4 WILD-TYPE	34	17	57	38	19	43

'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.66

Table S5733. Gene #582: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PRICKLE4 MUTATED	2	0	1
PRICKLE4 WILD-TYPE	120	51	37

'TRIM46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.43

Table S5734. Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRIM46 MUTATED	1	8	1	1	1
TRIM46 WILD-TYPE	78	118	26	42	11

'TRIM46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00313 (Fisher's exact test), Q value = 0.026

Table S5735. Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRIM46 MUTATED	0	7	1	0
TRIM46 WILD-TYPE	71	69	33	63

Figure S2258. Get High-res Image Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRIM46 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00394 (Fisher's exact test), Q value = 0.03

Table S5736. Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TRIM46 MUTATED	8	1	1
TRIM46 WILD-TYPE	70	85	84

Figure S2259. Get High-res Image Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TRIM46 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.33

Table S5737. Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TRIM46 MUTATED	2	1	4	3
TRIM46 WILD-TYPE	31	77	47	84

'TRIM46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00292 (Fisher's exact test), Q value = 0.025

Table S5738. Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TRIM46 MUTATED	8	1	0	2	0
TRIM46 WILD-TYPE	57	58	42	32	57

Figure S2260. Get High-res Image Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TRIM46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.001 (Fisher's exact test), Q value = 0.013

Table S5739. Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TRIM46 MUTATED	1	0	0	2	3	0	5
TRIM46 WILD-TYPE	35	21	48	54	36	37	15

Figure S2261. Get High-res Image Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.069

Table S5740. Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TRIM46 MUTATED	10	2	0
TRIM46 WILD-TYPE	116	94	67

Figure S2262. Get High-res Image Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.012

Table S5741. Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TRIM46 MUTATED	8	3	0	1
TRIM46 WILD-TYPE	48	102	60	67

Figure S2263. Get High-res Image Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.33

Table S5742. Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TRIM46 MUTATED	1	1	2	4	0	0
TRIM46 WILD-TYPE	33	17	57	34	19	43

'TRIM46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.24

Table S5743. Gene #583: 'TRIM46 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TRIM46 MUTATED	5	0	3
TRIM46 WILD-TYPE	117	51	35

'FOXJ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.42

Table S5744. Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FOXJ1 MUTATED	0	5	0	0	0
FOXJ1 WILD-TYPE	79	121	27	43	12

'FOXJ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 0.2

Table S5745. Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FOXJ1 MUTATED	0	3	1	0
FOXJ1 WILD-TYPE	71	73	33	63

'FOXJ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.33

Table S5746. Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FOXJ1 MUTATED	2	0	1
FOXJ1 WILD-TYPE	76	86	84

'FOXJ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.055 (Fisher's exact test), Q value = 0.14

Table S5747. Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FOXJ1 MUTATED	1	0	2	0
FOXJ1 WILD-TYPE	32	78	49	87

'FOXJ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.14

Table S5748. Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FOXJ1 MUTATED	3	0	0	2	0
FOXJ1 WILD-TYPE	62	59	42	32	57

'FOXJ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00546 (Fisher's exact test), Q value = 0.036

Table S5749. Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FOXJ1 MUTATED	0	0	0	0	3	0	2
FOXJ1 WILD-TYPE	36	21	48	56	36	37	18

Figure S2264. Get High-res Image Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FOXJ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.15

Table S5750. Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FOXJ1 MUTATED	5	0	0
FOXJ1 WILD-TYPE	121	96	67

'FOXJ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.053

Table S5751. Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FOXJ1 MUTATED	4	1	0	0
FOXJ1 WILD-TYPE	52	104	60	68

Figure S2265. Get High-res Image Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FOXJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.62

Table S5752. Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FOXJ1 MUTATED	0	0	2	2	0	0
FOXJ1 WILD-TYPE	34	18	57	36	19	43

'FOXJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.12

Table S5753. Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FOXJ1 MUTATED	1	0	3
FOXJ1 WILD-TYPE	121	51	35

Figure S2266. Get High-res Image Gene #584: 'FOXJ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DCHS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.42

Table S5754. Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DCHS1 MUTATED	4	18	2	4	1
DCHS1 WILD-TYPE	75	108	25	39	11

'DCHS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00117 (Fisher's exact test), Q value = 0.014

Table S5755. Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DCHS1 MUTATED	4	17	2	2
DCHS1 WILD-TYPE	67	59	32	61

Figure S2267. Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DCHS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00215 (Fisher's exact test), Q value = 0.021

Table S5756. Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DCHS1 MUTATED	16	3	8
DCHS1 WILD-TYPE	62	83	77

Figure S2268. Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DCHS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0066 (Fisher's exact test), Q value = 0.04

Table S5757. Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DCHS1 MUTATED	5	5	12	5
DCHS1 WILD-TYPE	28	73	39	82

Figure S2269. Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DCHS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.098

Table S5758. Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DCHS1 MUTATED	10	2	4	6	2
DCHS1 WILD-TYPE	55	57	38	28	55

Figure S2270. Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DCHS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.061

Table S5759. Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DCHS1 MUTATED	3	0	1	7	5	2	6
DCHS1 WILD-TYPE	33	21	47	49	34	35	14

Figure S2271. Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DCHS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.09

Table S5760. Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DCHS1 MUTATED	19	4	6
DCHS1 WILD-TYPE	107	92	61

Figure S2272. Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DCHS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S5761. Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DCHS1 MUTATED	16	5	3	5
DCHS1 WILD-TYPE	40	100	57	63

Figure S2273. Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DCHS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 0.45

Table S5762. Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DCHS1 MUTATED	4	2	9	3	0	2
DCHS1 WILD-TYPE	30	16	50	35	19	41

'DCHS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00202 (Fisher's exact test), Q value = 0.02

Table S5763. Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DCHS1 MUTATED	7	3	10
DCHS1 WILD-TYPE	115	48	28

Figure S2274. Get High-res Image Gene #585: 'DCHS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HLA-F MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.09

Table S5764. Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HLA-F MUTATED	0	10	1	0	0
HLA-F WILD-TYPE	79	116	26	43	12

Figure S2275. Get High-res Image Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.6

Table S5765. Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HLA-F MUTATED	2	5	1	1
HLA-F WILD-TYPE	69	71	33	62

'HLA-F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 0.11

Table S5766. Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HLA-F MUTATED	6	1	1
HLA-F WILD-TYPE	72	85	84

Figure S2276. Get High-res Image Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HLA-F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0767 (Fisher's exact test), Q value = 0.17

Table S5767. Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HLA-F MUTATED	2	1	4	1
HLA-F WILD-TYPE	31	77	47	86

'HLA-F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.29

Table S5768. Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HLA-F MUTATED	3	1	1	4	1
HLA-F WILD-TYPE	62	58	41	30	56

'HLA-F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.15

Table S5769. Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HLA-F MUTATED	2	0	0	3	2	0	3
HLA-F WILD-TYPE	34	21	48	53	37	37	17

'HLA-F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00522 (Fisher's exact test), Q value = 0.035

Table S5770. Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HLA-F MUTATED	10	1	0
HLA-F WILD-TYPE	116	95	67

Figure S2277. Get High-res Image Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HLA-F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0857 (Fisher's exact test), Q value = 0.19

Table S5771. Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HLA-F MUTATED	4	6	0	1
HLA-F WILD-TYPE	52	99	60	67

'HLA-F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.35

Table S5772. Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HLA-F MUTATED	1	2	3	3	0	0
HLA-F WILD-TYPE	33	16	56	35	19	43

'HLA-F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00164 (Fisher's exact test), Q value = 0.018

Table S5773. Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HLA-F MUTATED	3	0	6
HLA-F WILD-TYPE	119	51	32

Figure S2278. Get High-res Image Gene #586: 'HLA-F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WNT9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.41

Table S5774. Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WNT9A MUTATED	1	5	2	0	0
WNT9A WILD-TYPE	78	121	25	43	12

'WNT9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.25

Table S5775. Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WNT9A MUTATED	1	4	2	0
WNT9A WILD-TYPE	70	72	32	63

'WNT9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S5776. Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
WNT9A MUTATED	3	1	2
WNT9A WILD-TYPE	75	85	83

'WNT9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.75

Table S5777. Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
WNT9A MUTATED	1	2	2	1
WNT9A WILD-TYPE	32	76	49	86

'WNT9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S5778. Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
WNT9A MUTATED	4	1	0	2	1
WNT9A WILD-TYPE	61	58	42	32	56

'WNT9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.5

Table S5779. Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
WNT9A MUTATED	1	1	0	1	3	1	1
WNT9A WILD-TYPE	35	20	48	55	36	36	19

'WNT9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S5780. Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
WNT9A MUTATED	5	1	2
WNT9A WILD-TYPE	121	95	65

'WNT9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.71

Table S5781. Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
WNT9A MUTATED	3	3	1	1
WNT9A WILD-TYPE	53	102	59	67

'WNT9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.37

Table S5782. Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
WNT9A MUTATED	0	2	1	1	1	1
WNT9A WILD-TYPE	34	16	58	37	18	42

'WNT9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S5783. Gene #587: 'WNT9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
WNT9A MUTATED	2	1	3
WNT9A WILD-TYPE	120	50	35

'PPL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.35

Table S5784. Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PPL MUTATED	1	10	2	2	0
PPL WILD-TYPE	78	116	25	41	12

'PPL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0585 (Fisher's exact test), Q value = 0.15

Table S5785. Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PPL MUTATED	1	8	3	2
PPL WILD-TYPE	70	68	31	61

'PPL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.068

Table S5786. Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PPL MUTATED	9	1	4
PPL WILD-TYPE	69	85	81

Figure S2279. Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PPL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00061 (Fisher's exact test), Q value = 0.0095

Table S5787. Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PPL MUTATED	4	3	7	0
PPL WILD-TYPE	29	75	44	87

Figure S2280. Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PPL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.0074

Table S5788. Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PPL MUTATED	10	0	3	3	0
PPL WILD-TYPE	55	59	39	31	57

Figure S2281. Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PPL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.12

Table S5789. Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PPL MUTATED	3	1	0	5	4	0	3
PPL WILD-TYPE	33	20	48	51	35	37	17

Figure S2282. Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S5790. Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PPL MUTATED	15	1	0
PPL WILD-TYPE	111	95	67

Figure S2283. Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PPL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0031

Table S5791. Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PPL MUTATED	9	7	0	0
PPL WILD-TYPE	47	98	60	68

Figure S2284. Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.1

Table S5792. Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PPL MUTATED	2	3	7	1	0	0
PPL WILD-TYPE	32	15	52	37	19	43

Figure S2285. Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.079

Table S5793. Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PPL MUTATED	8	0	5
PPL WILD-TYPE	114	51	33

Figure S2286. Get High-res Image Gene #588: 'PPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTOV1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.1

Table S5794. Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PTOV1 MUTATED	0	8	0	0	1
PTOV1 WILD-TYPE	79	118	27	43	11

Figure S2287. Get High-res Image Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTOV1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.1

Table S5795. Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PTOV1 MUTATED	0	6	0	2
PTOV1 WILD-TYPE	71	70	34	61

Figure S2288. Get High-res Image Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTOV1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.52

Table S5796. Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PTOV1 MUTATED	5	2	2
PTOV1 WILD-TYPE	73	84	83

'PTOV1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.088

Table S5797. Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PTOV1 MUTATED	2	1	5	1
PTOV1 WILD-TYPE	31	77	46	86

Figure S2289. Get High-res Image Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTOV1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.077

Table S5798. Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PTOV1 MUTATED	6	1	0	2	0
PTOV1 WILD-TYPE	59	58	42	32	57

Figure S2290. Get High-res Image Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTOV1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.055

Table S5799. Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PTOV1 MUTATED	0	0	1	1	4	0	3
PTOV1 WILD-TYPE	36	21	47	55	35	37	17

Figure S2291. Get High-res Image Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTOV1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.26

Table S5800. Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PTOV1 MUTATED	7	1	1
PTOV1 WILD-TYPE	119	95	66

'PTOV1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0051 (Fisher's exact test), Q value = 0.035

Table S5801. Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PTOV1 MUTATED	6	2	1	0
PTOV1 WILD-TYPE	50	103	59	68

Figure S2292. Get High-res Image Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTOV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 0.96

Table S5802. Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PTOV1 MUTATED	2	0	2	1	0	1
PTOV1 WILD-TYPE	32	18	57	37	19	42

'PTOV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.71

Table S5803. Gene #589: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PTOV1 MUTATED	3	1	2
PTOV1 WILD-TYPE	119	50	36

'PCCA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.36

Table S5804. Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PCCA MUTATED	0	6	1	1	0
PCCA WILD-TYPE	79	120	26	42	12

'PCCA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.14

Table S5805. Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PCCA MUTATED	0	5	0	1
PCCA WILD-TYPE	71	71	34	62

'PCCA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.44

Table S5806. Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PCCA MUTATED	4	1	3
PCCA WILD-TYPE	74	85	82

'PCCA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0654 (Fisher's exact test), Q value = 0.16

Table S5807. Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PCCA MUTATED	2	3	3	0
PCCA WILD-TYPE	31	75	48	87

'PCCA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0998 (Fisher's exact test), Q value = 0.21

Table S5808. Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PCCA MUTATED	4	0	1	1	0
PCCA WILD-TYPE	61	59	41	33	57

'PCCA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.56

Table S5809. Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PCCA MUTATED	1	0	0	3	1	0	1
PCCA WILD-TYPE	35	21	48	53	38	37	19

'PCCA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00453 (Fisher's exact test), Q value = 0.032

Table S5810. Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PCCA MUTATED	8	0	0
PCCA WILD-TYPE	118	96	67

Figure S2293. Get High-res Image Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PCCA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.052

Table S5811. Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PCCA MUTATED	5	3	0	0
PCCA WILD-TYPE	51	102	60	68

Figure S2294. Get High-res Image Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PCCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.36

Table S5812. Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PCCA MUTATED	1	1	4	0	0	0
PCCA WILD-TYPE	33	17	55	38	19	43

'PCCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.43

Table S5813. Gene #590: 'PCCA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PCCA MUTATED	4	0	2
PCCA WILD-TYPE	118	51	36

'TAF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0583 (Fisher's exact test), Q value = 0.15

Table S5814. Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TAF6 MUTATED	0	9	1	1	1
TAF6 WILD-TYPE	79	117	26	42	11

'TAF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.41

Table S5815. Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TAF6 MUTATED	2	6	1	1
TAF6 WILD-TYPE	69	70	33	62

'TAF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S5816. Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TAF6 MUTATED	5	1	5
TAF6 WILD-TYPE	73	85	80

'TAF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.39

Table S5817. Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TAF6 MUTATED	1	2	5	3
TAF6 WILD-TYPE	32	76	46	84

'TAF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.25

Table S5818. Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TAF6 MUTATED	6	1	1	3	1
TAF6 WILD-TYPE	59	58	41	31	56

'TAF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.066

Table S5819. Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TAF6 MUTATED	2	0	1	2	1	1	5
TAF6 WILD-TYPE	34	21	47	54	38	36	15

Figure S2295. Get High-res Image Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TAF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.56

Table S5820. Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TAF6 MUTATED	7	2	3
TAF6 WILD-TYPE	119	94	64

'TAF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 0.2

Table S5821. Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TAF6 MUTATED	6	3	1	2
TAF6 WILD-TYPE	50	102	59	66

'TAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.85

Table S5822. Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TAF6 MUTATED	1	1	3	3	0	1
TAF6 WILD-TYPE	33	17	56	35	19	42

'TAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.29

Table S5823. Gene #591: 'TAF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TAF6 MUTATED	7	0	2
TAF6 WILD-TYPE	115	51	36

'ITGA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00419 (Fisher's exact test), Q value = 0.03

Table S5824. Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ITGA7 MUTATED	0	13	1	0	0
ITGA7 WILD-TYPE	79	113	26	43	12

Figure S2296. Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ITGA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00842 (Fisher's exact test), Q value = 0.047

Table S5825. Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ITGA7 MUTATED	0	7	3	1
ITGA7 WILD-TYPE	71	69	31	62

Figure S2297. Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ITGA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0058

Table S5826. Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ITGA7 MUTATED	10	0	3
ITGA7 WILD-TYPE	68	86	82

Figure S2298. Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ITGA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.48

Table S5827. Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ITGA7 MUTATED	2	3	5	3
ITGA7 WILD-TYPE	31	75	46	84

'ITGA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.012

Table S5828. Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ITGA7 MUTATED	8	0	2	4	0
ITGA7 WILD-TYPE	57	59	40	30	57

Figure S2299. Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ITGA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.005

Table S5829. Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ITGA7 MUTATED	2	0	0	3	3	0	6
ITGA7 WILD-TYPE	34	21	48	53	36	37	14

Figure S2300. Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITGA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.092

Table S5830. Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ITGA7 MUTATED	11	2	1
ITGA7 WILD-TYPE	115	94	66

Figure S2301. Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ITGA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00209 (Fisher's exact test), Q value = 0.021

Table S5831. Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ITGA7 MUTATED	6	8	0	0
ITGA7 WILD-TYPE	50	97	60	68

Figure S2302. Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ITGA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.16

Table S5832. Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ITGA7 MUTATED	1	2	3	5	0	0
ITGA7 WILD-TYPE	33	16	56	33	19	43

'ITGA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 0.12

Table S5833. Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ITGA7 MUTATED	7	0	4
ITGA7 WILD-TYPE	115	51	34

Figure S2303. Get High-res Image Gene #592: 'ITGA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C11ORF63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.67

Table S5834. Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C11ORF63 MUTATED	5	7	0	1	1
C11ORF63 WILD-TYPE	74	119	27	42	11

'C11ORF63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.15

Table S5835. Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C11ORF63 MUTATED	4	7	2	0
C11ORF63 WILD-TYPE	67	69	32	63

'C11ORF63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.42

Table S5836. Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C11ORF63 MUTATED	6	4	2
C11ORF63 WILD-TYPE	72	82	83

'C11ORF63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 0.18

Table S5837. Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C11ORF63 MUTATED	3	2	5	2
C11ORF63 WILD-TYPE	30	76	46	85

'C11ORF63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.41

Table S5838. Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C11ORF63 MUTATED	6	1	1	3	3
C11ORF63 WILD-TYPE	59	58	41	31	54

'C11ORF63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.25

Table S5839. Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C11ORF63 MUTATED	3	0	0	3	3	2	3
C11ORF63 WILD-TYPE	33	21	48	53	36	35	17

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0331 (Fisher's exact test), Q value = 0.11

Table S5840. Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C11ORF63 MUTATED	11	1	3
C11ORF63 WILD-TYPE	115	95	64

Figure S2304. Get High-res Image Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.16

Table S5841. Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C11ORF63 MUTATED	7	5	1	2
C11ORF63 WILD-TYPE	49	100	59	66

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.15

Table S5842. Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C11ORF63 MUTATED	5	1	5	1	0	0
C11ORF63 WILD-TYPE	29	17	54	37	19	43

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00686 (Fisher's exact test), Q value = 0.041

Table S5843. Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C11ORF63 MUTATED	6	0	6
C11ORF63 WILD-TYPE	116	51	32

Figure S2305. Get High-res Image Gene #593: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ENOSF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.59

Table S5844. Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ENOSF1 MUTATED	1	6	0	0	0
ENOSF1 WILD-TYPE	78	120	27	43	12

'ENOSF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.52

Table S5845. Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ENOSF1 MUTATED	1	4	0	1
ENOSF1 WILD-TYPE	70	72	34	62

'ENOSF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.19

Table S5846. Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ENOSF1 MUTATED	4	0	3
ENOSF1 WILD-TYPE	74	86	82

'ENOSF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.29

Table S5847. Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ENOSF1 MUTATED	0	1	4	2
ENOSF1 WILD-TYPE	33	77	47	85

'ENOSF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.71

Table S5848. Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ENOSF1 MUTATED	3	1	0	0	1
ENOSF1 WILD-TYPE	62	58	42	34	56

'ENOSF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 0.93

Table S5849. Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ENOSF1 MUTATED	1	0	1	1	1	0	1
ENOSF1 WILD-TYPE	35	21	47	55	38	37	19

'ENOSF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.54

Table S5850. Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ENOSF1 MUTATED	5	1	1
ENOSF1 WILD-TYPE	121	95	66

'ENOSF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.048 (Fisher's exact test), Q value = 0.13

Table S5851. Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ENOSF1 MUTATED	4	1	0	2
ENOSF1 WILD-TYPE	52	104	60	66

Figure S2306. Get High-res Image Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ENOSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.82

Table S5852. Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ENOSF1 MUTATED	1	1	2	0	0	1
ENOSF1 WILD-TYPE	33	17	57	38	19	42

'ENOSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.57

Table S5853. Gene #594: 'ENOSF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ENOSF1 MUTATED	4	0	1
ENOSF1 WILD-TYPE	118	51	37

'SLC38A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.56

Table S5854. Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC38A6 MUTATED	1	6	1	0	0
SLC38A6 WILD-TYPE	78	120	26	43	12

'SLC38A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00652 (Fisher's exact test), Q value = 0.04

Table S5855. Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC38A6 MUTATED	0	7	0	1
SLC38A6 WILD-TYPE	71	69	34	62

Figure S2307. Get High-res Image Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC38A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.56

Table S5856. Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC38A6 MUTATED	3	1	2
SLC38A6 WILD-TYPE	75	85	83

'SLC38A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.4

Table S5857. Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC38A6 MUTATED	1	1	3	1
SLC38A6 WILD-TYPE	32	77	48	86

'SLC38A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.12

Table S5858. Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC38A6 MUTATED	5	0	1	1	0
SLC38A6 WILD-TYPE	60	59	41	33	57

Figure S2308. Get High-res Image Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC38A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.4

Table S5859. Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC38A6 MUTATED	1	0	0	2	3	0	1
SLC38A6 WILD-TYPE	35	21	48	54	36	37	19

'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 0.15

Table S5860. Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC38A6 MUTATED	7	1	0
SLC38A6 WILD-TYPE	119	95	67

'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.21

Table S5861. Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC38A6 MUTATED	4	3	1	0
SLC38A6 WILD-TYPE	52	102	59	68

'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.21

Table S5862. Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLC38A6 MUTATED	0	1	3	4	0	0
SLC38A6 WILD-TYPE	34	17	56	34	19	43

'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.48

Table S5863. Gene #595: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLC38A6 MUTATED	4	1	3
SLC38A6 WILD-TYPE	118	50	35

'KCNC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S5864. Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KCNC1 MUTATED	0	6	0	0	0
KCNC1 WILD-TYPE	79	120	27	43	12

'KCNC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0088 (Fisher's exact test), Q value = 0.048

Table S5865. Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KCNC1 MUTATED	0	6	1	0
KCNC1 WILD-TYPE	71	70	33	63

Figure S2309. Get High-res Image Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.56

Table S5866. Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KCNC1 MUTATED	3	1	1
KCNC1 WILD-TYPE	75	85	84

'KCNC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.081 (Fisher's exact test), Q value = 0.18

Table S5867. Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KCNC1 MUTATED	1	0	3	1
KCNC1 WILD-TYPE	32	78	48	86

'KCNC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.066

Table S5868. Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KCNC1 MUTATED	5	0	0	1	0
KCNC1 WILD-TYPE	60	59	42	33	57

Figure S2310. Get High-res Image Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KCNC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0314 (Fisher's exact test), Q value = 0.1

Table S5869. Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KCNC1 MUTATED	0	0	0	1	3	0	2
KCNC1 WILD-TYPE	36	21	48	55	36	37	18

Figure S2311. Get High-res Image Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 0.18

Table S5870. Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KCNC1 MUTATED	6	1	0
KCNC1 WILD-TYPE	120	95	67

'KCNC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00916 (Fisher's exact test), Q value = 0.049

Table S5871. Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KCNC1 MUTATED	5	1	1	0
KCNC1 WILD-TYPE	51	104	59	68

Figure S2312. Get High-res Image Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KCNC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.64

Table S5872. Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KCNC1 MUTATED	2	0	2	2	0	0
KCNC1 WILD-TYPE	32	18	57	36	19	43

'KCNC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S5873. Gene #596: 'KCNC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KCNC1 MUTATED	2	1	3
KCNC1 WILD-TYPE	120	50	35

'AMPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.072

Table S5874. Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AMPD3 MUTATED	1	13	4	1	0
AMPD3 WILD-TYPE	78	113	23	42	12

Figure S2313. Get High-res Image Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AMPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.0048

Table S5875. Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AMPD3 MUTATED	0	11	3	1
AMPD3 WILD-TYPE	71	65	31	62

Figure S2314. Get High-res Image Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AMPD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00187 (Fisher's exact test), Q value = 0.019

Table S5876. Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
AMPD3 MUTATED	12	1	5
AMPD3 WILD-TYPE	66	85	80

Figure S2315. Get High-res Image Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'AMPD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.058

Table S5877. Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
AMPD3 MUTATED	3	3	9	3
AMPD3 WILD-TYPE	30	75	42	84

Figure S2316. Get High-res Image Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AMPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.17

Table S5878. Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
AMPD3 MUTATED	6	1	4	4	1
AMPD3 WILD-TYPE	59	58	38	30	56

'AMPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0256 (Fisher's exact test), Q value = 0.09

Table S5879. Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
AMPD3 MUTATED	2	0	1	5	7	0	1
AMPD3 WILD-TYPE	34	21	47	51	32	37	19

Figure S2317. Get High-res Image Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AMPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00191 (Fisher's exact test), Q value = 0.019

Table S5880. Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
AMPD3 MUTATED	15	4	0
AMPD3 WILD-TYPE	111	92	67

Figure S2318. Get High-res Image Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AMPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.053

Table S5881. Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
AMPD3 MUTATED	9	7	2	1
AMPD3 WILD-TYPE	47	98	58	67

Figure S2319. Get High-res Image Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.43

Table S5882. Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
AMPD3 MUTATED	1	3	6	2	0	2
AMPD3 WILD-TYPE	33	15	53	36	19	41

'AMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.44

Table S5883. Gene #597: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
AMPD3 MUTATED	10	1	3
AMPD3 WILD-TYPE	112	50	35

'PPARG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.32

Table S5884. Gene #598: 'PPARG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PPARG MUTATED	0	3	0	0	1
PPARG WILD-TYPE	79	123	27	43	11

'PPARG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.33

Table S5885. Gene #598: 'PPARG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PPARG MUTATED	2	0	1
PPARG WILD-TYPE	76	86	84

'PPARG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 0.48

Table S5886. Gene #598: 'PPARG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PPARG MUTATED	1	1	1	0
PPARG WILD-TYPE	32	77	50	87

'PPARG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.47

Table S5887. Gene #598: 'PPARG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PPARG MUTATED	2	0	1	1	0
PPARG WILD-TYPE	63	59	41	33	57

'PPARG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.49

Table S5888. Gene #598: 'PPARG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PPARG MUTATED	1	0	0	2	0	0	1
PPARG WILD-TYPE	35	21	48	54	39	37	19

'PPARG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S5889. Gene #598: 'PPARG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PPARG MUTATED	4	0	0
PPARG WILD-TYPE	122	96	67

'PPARG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0629 (Fisher's exact test), Q value = 0.15

Table S5890. Gene #598: 'PPARG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PPARG MUTATED	3	1	0	0
PPARG WILD-TYPE	53	104	60	68

'TRIM27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S5891. Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRIM27 MUTATED	0	4	0	0	1
TRIM27 WILD-TYPE	79	122	27	43	11

'TRIM27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0959 (Fisher's exact test), Q value = 0.2

Table S5892. Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRIM27 MUTATED	0	3	1	0
TRIM27 WILD-TYPE	71	73	33	63

'TRIM27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.51

Table S5893. Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TRIM27 MUTATED	2	0	2
TRIM27 WILD-TYPE	76	86	83

'TRIM27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0849 (Fisher's exact test), Q value = 0.19

Table S5894. Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TRIM27 MUTATED	2	1	1	0
TRIM27 WILD-TYPE	31	77	50	87

'TRIM27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.14

Table S5895. Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TRIM27 MUTATED	3	0	0	2	0
TRIM27 WILD-TYPE	62	59	42	32	57

'TRIM27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S5896. Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TRIM27 MUTATED	1	0	0	1	2	0	1
TRIM27 WILD-TYPE	35	21	48	55	37	37	19

'TRIM27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.15

Table S5897. Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TRIM27 MUTATED	5	0	0
TRIM27 WILD-TYPE	121	96	67

'TRIM27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0057

Table S5898. Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TRIM27 MUTATED	5	0	0	0
TRIM27 WILD-TYPE	51	105	60	68

Figure S2320. Get High-res Image Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TRIM27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.65

Table S5899. Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TRIM27 MUTATED	0	0	3	1	0	0
TRIM27 WILD-TYPE	34	18	56	37	19	43

'TRIM27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.31

Table S5900. Gene #599: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TRIM27 MUTATED	2	0	2
TRIM27 WILD-TYPE	120	51	36

'MMP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.31

Table S5901. Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MMP3 MUTATED	0	7	0	1	0
MMP3 WILD-TYPE	79	119	27	42	12

'MMP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.37

Table S5902. Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MMP3 MUTATED	0	4	1	2
MMP3 WILD-TYPE	71	72	33	61

'MMP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.091

Table S5903. Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MMP3 MUTATED	5	0	2
MMP3 WILD-TYPE	73	86	83

Figure S2321. Get High-res Image Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MMP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00415 (Fisher's exact test), Q value = 0.03

Table S5904. Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MMP3 MUTATED	1	1	5	0
MMP3 WILD-TYPE	32	77	46	87

Figure S2322. Get High-res Image Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MMP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00184 (Fisher's exact test), Q value = 0.019

Table S5905. Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MMP3 MUTATED	7	0	1	0	0
MMP3 WILD-TYPE	58	59	41	34	57

Figure S2323. Get High-res Image Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MMP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-04 (Fisher's exact test), Q value = 0.0084

Table S5906. Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MMP3 MUTATED	3	0	0	1	0	0	4
MMP3 WILD-TYPE	33	21	48	55	39	37	16

Figure S2324. Get High-res Image Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MMP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 0.092

Table S5907. Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MMP3 MUTATED	7	0	1
MMP3 WILD-TYPE	119	96	66

Figure S2325. Get High-res Image Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MMP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.12

Table S5908. Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MMP3 MUTATED	4	4	0	0
MMP3 WILD-TYPE	52	101	60	68

Figure S2326. Get High-res Image Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.29

Table S5909. Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MMP3 MUTATED	0	0	4	3	0	0
MMP3 WILD-TYPE	34	18	55	35	19	43

'MMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.39

Table S5910. Gene #600: 'MMP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MMP3 MUTATED	5	0	2
MMP3 WILD-TYPE	117	51	36

'IDE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S5911. Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IDE MUTATED	1	5	3	0	0
IDE WILD-TYPE	78	121	24	43	12

'IDE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.61

Table S5912. Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IDE MUTATED	1	4	1	1
IDE WILD-TYPE	70	72	33	62

'IDE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00931 (Fisher's exact test), Q value = 0.05

Table S5913. Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IDE MUTATED	6	0	2
IDE WILD-TYPE	72	86	83

Figure S2327. Get High-res Image Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IDE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00809 (Fisher's exact test), Q value = 0.046

Table S5914. Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IDE MUTATED	0	3	5	0
IDE WILD-TYPE	33	75	46	87

Figure S2328. Get High-res Image Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IDE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.26

Table S5915. Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IDE MUTATED	2	0	1	3	1
IDE WILD-TYPE	63	59	41	31	56

'IDE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0469 (Fisher's exact test), Q value = 0.13

Table S5916. Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IDE MUTATED	0	0	0	2	4	0	1
IDE WILD-TYPE	36	21	48	54	35	37	19

Figure S2329. Get High-res Image Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IDE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S5917. Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IDE MUTATED	7	1	1
IDE WILD-TYPE	119	95	66

'IDE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.49

Table S5918. Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IDE MUTATED	4	3	1	1
IDE WILD-TYPE	52	102	59	67

'IDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.35

Table S5919. Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IDE MUTATED	3	1	1	0	0	1
IDE WILD-TYPE	31	17	58	38	19	42

'IDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S5920. Gene #601: 'IDE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IDE MUTATED	2	1	3
IDE WILD-TYPE	120	50	35

'LARP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5921. Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LARP7 MUTATED	1	2	0	0	0
LARP7 WILD-TYPE	78	124	27	43	12

'LARP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.77

Table S5922. Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LARP7 MUTATED	1	1	1	0
LARP7 WILD-TYPE	70	75	33	63

'LARP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.53

Table S5923. Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LARP7 MUTATED	1	0	2
LARP7 WILD-TYPE	77	86	83

'LARP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.48

Table S5924. Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LARP7 MUTATED	1	1	1	0
LARP7 WILD-TYPE	32	77	50	87

'LARP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.78

Table S5925. Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LARP7 MUTATED	1	0	0	1	1
LARP7 WILD-TYPE	64	59	42	33	56

'LARP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.35

Table S5926. Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LARP7 MUTATED	0	0	0	0	1	1	1
LARP7 WILD-TYPE	36	21	48	56	38	36	19

'LARP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.56

Table S5927. Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LARP7 MUTATED	2	0	1
LARP7 WILD-TYPE	124	96	66

'LARP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S5928. Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LARP7 MUTATED	2	0	0	1
LARP7 WILD-TYPE	54	105	60	67

'LARP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 0.81

Table S5929. Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LARP7 MUTATED	1	0	2	0	0	0
LARP7 WILD-TYPE	33	18	57	38	19	43

'LARP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.66

Table S5930. Gene #602: 'LARP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LARP7 MUTATED	2	0	1
LARP7 WILD-TYPE	120	51	37

'KIF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.34

Table S5931. Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIF6 MUTATED	0	5	1	0	0
KIF6 WILD-TYPE	79	121	26	43	12

'KIF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.53

Table S5932. Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIF6 MUTATED	1	3	1	0
KIF6 WILD-TYPE	70	73	33	63

'KIF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S5933. Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIF6 MUTATED	3	1	2
KIF6 WILD-TYPE	75	85	83

'KIF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.49

Table S5934. Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIF6 MUTATED	0	1	3	2
KIF6 WILD-TYPE	33	77	48	85

'KIF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.32

Table S5935. Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIF6 MUTATED	4	2	0	1	0
KIF6 WILD-TYPE	61	57	42	33	57

'KIF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.27

Table S5936. Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIF6 MUTATED	1	2	0	1	2	0	1
KIF6 WILD-TYPE	35	19	48	55	37	37	19

'KIF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.45

Table S5937. Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIF6 MUTATED	4	3	0
KIF6 WILD-TYPE	122	93	67

'KIF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0636 (Fisher's exact test), Q value = 0.16

Table S5938. Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIF6 MUTATED	3	1	3	0
KIF6 WILD-TYPE	53	104	57	68

'KIF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 0.87

Table S5939. Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIF6 MUTATED	1	0	1	0	0	2
KIF6 WILD-TYPE	33	18	58	38	19	41

'KIF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 0.86

Table S5940. Gene #603: 'KIF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIF6 MUTATED	2	1	1
KIF6 WILD-TYPE	120	50	37

'PLEKHH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.15

Table S5941. Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PLEKHH3 MUTATED	0	7	1	0	1
PLEKHH3 WILD-TYPE	79	119	26	43	11

'PLEKHH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.59

Table S5942. Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PLEKHH3 MUTATED	1	4	0	2
PLEKHH3 WILD-TYPE	70	72	34	61

'PLEKHH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.32

Table S5943. Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PLEKHH3 MUTATED	2	1	5
PLEKHH3 WILD-TYPE	76	85	80

'PLEKHH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0654 (Fisher's exact test), Q value = 0.16

Table S5944. Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PLEKHH3 MUTATED	2	3	3	0
PLEKHH3 WILD-TYPE	31	75	48	87

'PLEKHH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.053

Table S5945. Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PLEKHH3 MUTATED	5	0	0	2	0
PLEKHH3 WILD-TYPE	60	59	42	32	57

Figure S2330. Get High-res Image Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PLEKHH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S5946. Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PLEKHH3 MUTATED	2	0	0	1	2	0	2
PLEKHH3 WILD-TYPE	34	21	48	55	37	37	18

'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00181 (Fisher's exact test), Q value = 0.019

Table S5947. Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PLEKHH3 MUTATED	9	0	0
PLEKHH3 WILD-TYPE	117	96	67

Figure S2331. Get High-res Image Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0498 (Fisher's exact test), Q value = 0.13

Table S5948. Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PLEKHH3 MUTATED	5	3	0	1
PLEKHH3 WILD-TYPE	51	102	60	67

Figure S2332. Get High-res Image Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.26

Table S5949. Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PLEKHH3 MUTATED	0	1	5	1	0	0
PLEKHH3 WILD-TYPE	34	17	54	37	19	43

'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00538 (Fisher's exact test), Q value = 0.036

Table S5950. Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PLEKHH3 MUTATED	2	0	5
PLEKHH3 WILD-TYPE	120	51	33

Figure S2333. Get High-res Image Gene #604: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WSB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.22

Table S5951. Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
WSB2 MUTATED	0	8	0	1	0
WSB2 WILD-TYPE	79	118	27	42	12

'WSB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.16

Table S5952. Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
WSB2 MUTATED	0	5	2	1
WSB2 WILD-TYPE	71	71	32	62

'WSB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.071

Table S5953. Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
WSB2 MUTATED	6	0	3
WSB2 WILD-TYPE	72	86	82

Figure S2334. Get High-res Image Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WSB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0032

Table S5954. Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
WSB2 MUTATED	3	0	6	0
WSB2 WILD-TYPE	30	78	45	87

Figure S2335. Get High-res Image Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WSB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.1

Table S5955. Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
WSB2 MUTATED	5	0	1	2	0
WSB2 WILD-TYPE	60	59	41	32	57

Figure S2336. Get High-res Image Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WSB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.34

Table S5956. Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
WSB2 MUTATED	1	1	0	2	2	0	2
WSB2 WILD-TYPE	35	20	48	54	37	37	18

'WSB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00192 (Fisher's exact test), Q value = 0.02

Table S5957. Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
WSB2 MUTATED	9	0	0
WSB2 WILD-TYPE	117	96	67

Figure S2337. Get High-res Image Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WSB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0283 (Fisher's exact test), Q value = 0.095

Table S5958. Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
WSB2 MUTATED	4	5	0	0
WSB2 WILD-TYPE	52	100	60	68

Figure S2338. Get High-res Image Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WSB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.081

Table S5959. Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
WSB2 MUTATED	0	2	5	0	0	0
WSB2 WILD-TYPE	34	16	54	38	19	43

Figure S2339. Get High-res Image Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'WSB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.43

Table S5960. Gene #605: 'WSB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
WSB2 MUTATED	6	0	1
WSB2 WILD-TYPE	116	51	37

'KIAA1609 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.11

Table S5961. Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1609 MUTATED	0	4	0	1	2
KIAA1609 WILD-TYPE	79	122	27	42	10

Figure S2340. Get High-res Image Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1609 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.47

Table S5962. Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1609 MUTATED	0	3	1	1
KIAA1609 WILD-TYPE	71	73	33	62

'KIAA1609 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 0.81

Table S5963. Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA1609 MUTATED	2	1	2
KIAA1609 WILD-TYPE	76	85	83

'KIAA1609 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.69

Table S5964. Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA1609 MUTATED	0	2	2	1
KIAA1609 WILD-TYPE	33	76	49	86

'KIAA1609 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.35

Table S5965. Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA1609 MUTATED	4	1	1	0	0
KIAA1609 WILD-TYPE	61	58	41	34	57

'KIAA1609 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0746 (Fisher's exact test), Q value = 0.17

Table S5966. Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA1609 MUTATED	2	0	0	2	0	0	2
KIAA1609 WILD-TYPE	34	21	48	54	39	37	18

'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.18

Table S5967. Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA1609 MUTATED	6	1	0
KIAA1609 WILD-TYPE	120	95	67

'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0833 (Fisher's exact test), Q value = 0.18

Table S5968. Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA1609 MUTATED	4	2	1	0
KIAA1609 WILD-TYPE	52	103	59	68

'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.62

Table S5969. Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA1609 MUTATED	0	0	2	2	0	0
KIAA1609 WILD-TYPE	34	18	57	36	19	43

'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.31

Table S5970. Gene #606: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA1609 MUTATED	2	0	2
KIAA1609 WILD-TYPE	120	51	36

'AKAP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.34

Table S5971. Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AKAP11 MUTATED	2	10	0	1	1
AKAP11 WILD-TYPE	77	116	27	42	11

'AKAP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S5972. Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AKAP11 MUTATED	3	7	0	1
AKAP11 WILD-TYPE	68	69	34	62

'AKAP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.096

Table S5973. Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
AKAP11 MUTATED	8	1	4
AKAP11 WILD-TYPE	70	85	81

Figure S2341. Get High-res Image Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'AKAP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.063

Table S5974. Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
AKAP11 MUTATED	2	3	7	1
AKAP11 WILD-TYPE	31	75	44	86

Figure S2342. Get High-res Image Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.15

Table S5975. Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
AKAP11 MUTATED	5	0	1	4	3
AKAP11 WILD-TYPE	60	59	41	30	54

'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00595 (Fisher's exact test), Q value = 0.038

Table S5976. Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
AKAP11 MUTATED	1	0	0	2	5	1	4
AKAP11 WILD-TYPE	35	21	48	54	34	36	16

Figure S2343. Get High-res Image Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 0.14

Table S5977. Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
AKAP11 MUTATED	10	1	3
AKAP11 WILD-TYPE	116	95	64

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00435 (Fisher's exact test), Q value = 0.031

Table S5978. Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
AKAP11 MUTATED	8	4	0	2
AKAP11 WILD-TYPE	48	101	60	66

Figure S2344. Get High-res Image Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.29

Table S5979. Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
AKAP11 MUTATED	4	1	3	1	0	0
AKAP11 WILD-TYPE	30	17	56	37	19	43

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00856 (Fisher's exact test), Q value = 0.048

Table S5980. Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
AKAP11 MUTATED	4	0	5
AKAP11 WILD-TYPE	118	51	33

Figure S2345. Get High-res Image Gene #607: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VASH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.11

Table S5981. Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
VASH1 MUTATED	0	4	0	1	2
VASH1 WILD-TYPE	79	122	27	42	10

Figure S2346. Get High-res Image Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VASH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.31

Table S5982. Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
VASH1 MUTATED	0	4	1	1
VASH1 WILD-TYPE	71	72	33	62

'VASH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.56

Table S5983. Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
VASH1 MUTATED	3	1	2
VASH1 WILD-TYPE	75	85	83

'VASH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.4

Table S5984. Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
VASH1 MUTATED	1	1	3	1
VASH1 WILD-TYPE	32	77	48	86

'VASH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.61

Table S5985. Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
VASH1 MUTATED	4	1	1	0	1
VASH1 WILD-TYPE	61	58	41	34	56

'VASH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.41

Table S5986. Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
VASH1 MUTATED	0	0	1	2	2	0	2
VASH1 WILD-TYPE	36	21	47	54	37	37	18

'VASH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.18

Table S5987. Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
VASH1 MUTATED	6	1	0
VASH1 WILD-TYPE	120	95	67

'VASH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0044

Table S5988. Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
VASH1 MUTATED	6	0	1	0
VASH1 WILD-TYPE	50	105	59	68

Figure S2347. Get High-res Image Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'VASH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.59

Table S5989. Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
VASH1 MUTATED	1	0	1	0	1	0
VASH1 WILD-TYPE	33	18	58	38	18	43

'VASH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5990. Gene #608: 'VASH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
VASH1 MUTATED	2	1	0
VASH1 WILD-TYPE	120	50	38

'IFNA17 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5991. Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IFNA17 MUTATED	1	2	0	1	0
IFNA17 WILD-TYPE	78	124	27	42	12

'IFNA17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.58

Table S5992. Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IFNA17 MUTATED	2	0	0	1
IFNA17 WILD-TYPE	69	76	34	62

'IFNA17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.29

Table S5993. Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IFNA17 MUTATED	1	0	3
IFNA17 WILD-TYPE	77	86	82

'IFNA17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5994. Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IFNA17 MUTATED	0	1	1	2
IFNA17 WILD-TYPE	33	77	50	85

'IFNA17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.78

Table S5995. Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IFNA17 MUTATED	2	0	1	0	1
IFNA17 WILD-TYPE	63	59	41	34	56

'IFNA17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.49

Table S5996. Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IFNA17 MUTATED	1	0	0	2	0	0	1
IFNA17 WILD-TYPE	35	21	48	54	39	37	19

'IFNA17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.65

Table S5997. Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IFNA17 MUTATED	3	1	0
IFNA17 WILD-TYPE	123	95	67

'IFNA17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.73

Table S5998. Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IFNA17 MUTATED	1	1	0	2
IFNA17 WILD-TYPE	55	104	60	66

'IFNA17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 0.88

Table S5999. Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IFNA17 MUTATED	0	0	2	0	0	1
IFNA17 WILD-TYPE	34	18	57	38	19	42

'IFNA17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.66

Table S6000. Gene #609: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IFNA17 MUTATED	2	0	1
IFNA17 WILD-TYPE	120	51	37

'SBF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.013

Table S6001. Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SBF1 MUTATED	2	20	1	1	3
SBF1 WILD-TYPE	77	106	26	42	9

Figure S2348. Get High-res Image Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SBF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00342 (Fisher's exact test), Q value = 0.027

Table S6002. Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SBF1 MUTATED	1	13	3	3
SBF1 WILD-TYPE	70	63	31	60

Figure S2349. Get High-res Image Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SBF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0538 (Fisher's exact test), Q value = 0.14

Table S6003. Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SBF1 MUTATED	12	4	6
SBF1 WILD-TYPE	66	82	79

'SBF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.71

Table S6004. Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SBF1 MUTATED	4	5	6	7
SBF1 WILD-TYPE	29	73	45	80

'SBF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.069

Table S6005. Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SBF1 MUTATED	12	2	4	5	2
SBF1 WILD-TYPE	53	57	38	29	55

Figure S2350. Get High-res Image Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SBF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0039

Table S6006. Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SBF1 MUTATED	5	0	0	6	4	2	8
SBF1 WILD-TYPE	31	21	48	50	35	35	12

Figure S2351. Get High-res Image Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SBF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.071

Table S6007. Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SBF1 MUTATED	19	5	3
SBF1 WILD-TYPE	107	91	64

Figure S2352. Get High-res Image Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SBF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 0.11

Table S6008. Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SBF1 MUTATED	9	13	2	3
SBF1 WILD-TYPE	47	92	58	65

Figure S2353. Get High-res Image Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SBF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.31

Table S6009. Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SBF1 MUTATED	4	2	5	6	0	1
SBF1 WILD-TYPE	30	16	54	32	19	42

'SBF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S6010. Gene #610: 'SBF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SBF1 MUTATED	11	2	5
SBF1 WILD-TYPE	111	49	33

'SCN9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.85

Table S6011. Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SCN9A MUTATED	6	12	3	4	2
SCN9A WILD-TYPE	73	114	24	39	10

'SCN9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.056

Table S6012. Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SCN9A MUTATED	7	14	1	2
SCN9A WILD-TYPE	64	62	33	61

Figure S2354. Get High-res Image Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SCN9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 0.41

Table S6013. Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SCN9A MUTATED	10	5	8
SCN9A WILD-TYPE	68	81	77

'SCN9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.32

Table S6014. Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SCN9A MUTATED	2	6	9	6
SCN9A WILD-TYPE	31	72	42	81

'SCN9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.052

Table S6015. Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SCN9A MUTATED	13	1	4	2	4
SCN9A WILD-TYPE	52	58	38	32	53

Figure S2355. Get High-res Image Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SCN9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0801 (Fisher's exact test), Q value = 0.18

Table S6016. Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SCN9A MUTATED	2	1	1	8	4	3	5
SCN9A WILD-TYPE	34	20	47	48	35	34	15

'SCN9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.23

Table S6017. Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SCN9A MUTATED	17	5	6
SCN9A WILD-TYPE	109	91	61

'SCN9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.061

Table S6018. Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SCN9A MUTATED	12	8	2	6
SCN9A WILD-TYPE	44	97	58	62

Figure S2356. Get High-res Image Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SCN9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.35

Table S6019. Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SCN9A MUTATED	5	1	8	6	1	1
SCN9A WILD-TYPE	29	17	51	32	18	42

'SCN9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0373 (Fisher's exact test), Q value = 0.11

Table S6020. Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SCN9A MUTATED	12	2	8
SCN9A WILD-TYPE	110	49	30

Figure S2357. Get High-res Image Gene #611: 'SCN9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA0586 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.62

Table S6021. Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA0586 MUTATED	2	7	1	0	0
KIAA0586 WILD-TYPE	77	119	26	43	12

'KIAA0586 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.77

Table S6022. Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA0586 MUTATED	2	4	0	2
KIAA0586 WILD-TYPE	69	72	34	61

'KIAA0586 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00129 (Fisher's exact test), Q value = 0.015

Table S6023. Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA0586 MUTATED	8	0	2
KIAA0586 WILD-TYPE	70	86	83

Figure S2358. Get High-res Image Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA0586 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S6024. Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA0586 MUTATED	2	3	4	1
KIAA0586 WILD-TYPE	31	75	47	86

'KIAA0586 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.22

Table S6025. Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA0586 MUTATED	5	0	1	0	2
KIAA0586 WILD-TYPE	60	59	41	34	55

'KIAA0586 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.22

Table S6026. Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA0586 MUTATED	4	0	0	1	2	1	0
KIAA0586 WILD-TYPE	32	21	48	55	37	36	20

'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.18

Table S6027. Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA0586 MUTATED	8	1	1
KIAA0586 WILD-TYPE	118	95	66

'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0543 (Fisher's exact test), Q value = 0.14

Table S6028. Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA0586 MUTATED	5	4	0	1
KIAA0586 WILD-TYPE	51	101	60	67

'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.76

Table S6029. Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA0586 MUTATED	3	1	2	1	0	1
KIAA0586 WILD-TYPE	31	17	57	37	19	42

'KIAA0586 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.37

Table S6030. Gene #612: 'KIAA0586 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA0586 MUTATED	6	0	2
KIAA0586 WILD-TYPE	116	51	36

'MACF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.25

Table S6031. Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MACF1 MUTATED	7	27	3	5	2
MACF1 WILD-TYPE	72	99	24	38	10

'MACF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00153 (Fisher's exact test), Q value = 0.017

Table S6032. Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MACF1 MUTATED	6	22	5	5
MACF1 WILD-TYPE	65	54	29	58

Figure S2359. Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MACF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.057

Table S6033. Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MACF1 MUTATED	18	6	14
MACF1 WILD-TYPE	60	80	71

Figure S2360. Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MACF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.21

Table S6034. Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MACF1 MUTATED	6	10	13	9
MACF1 WILD-TYPE	27	68	38	78

'MACF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.059

Table S6035. Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MACF1 MUTATED	19	4	5	6	7
MACF1 WILD-TYPE	46	55	37	28	50

Figure S2361. Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MACF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.005

Table S6036. Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MACF1 MUTATED	6	0	3	9	7	5	11
MACF1 WILD-TYPE	30	21	45	47	32	32	9

Figure S2362. Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00358 (Fisher's exact test), Q value = 0.028

Table S6037. Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MACF1 MUTATED	30	8	7
MACF1 WILD-TYPE	96	88	60

Figure S2363. Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.0066

Table S6038. Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MACF1 MUTATED	19	16	4	6
MACF1 WILD-TYPE	37	89	56	62

Figure S2364. Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MACF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.16

Table S6039. Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MACF1 MUTATED	7	5	11	7	0	3
MACF1 WILD-TYPE	27	13	48	31	19	40

'MACF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00153 (Fisher's exact test), Q value = 0.017

Table S6040. Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MACF1 MUTATED	17	3	13
MACF1 WILD-TYPE	105	48	25

Figure S2365. Get High-res Image Gene #613: 'MACF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DYRK1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.31

Table S6041. Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DYRK1A MUTATED	0	7	0	1	0
DYRK1A WILD-TYPE	79	119	27	42	12

'DYRK1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.28

Table S6042. Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DYRK1A MUTATED	0	4	2	2
DYRK1A WILD-TYPE	71	72	32	61

'DYRK1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00558 (Fisher's exact test), Q value = 0.036

Table S6043. Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DYRK1A MUTATED	6	1	0
DYRK1A WILD-TYPE	72	85	85

Figure S2366. Get High-res Image Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DYRK1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0897 (Fisher's exact test), Q value = 0.19

Table S6044. Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DYRK1A MUTATED	3	1	2	1
DYRK1A WILD-TYPE	30	77	49	86

'DYRK1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.4

Table S6045. Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DYRK1A MUTATED	5	1	1	0	1
DYRK1A WILD-TYPE	60	58	41	34	56

'DYRK1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S6046. Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DYRK1A MUTATED	1	1	0	3	3	0	0
DYRK1A WILD-TYPE	35	20	48	53	36	37	20

'DYRK1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.091

Table S6047. Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DYRK1A MUTATED	8	1	0
DYRK1A WILD-TYPE	118	95	67

Figure S2367. Get High-res Image Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DYRK1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.12

Table S6048. Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DYRK1A MUTATED	5	3	1	0
DYRK1A WILD-TYPE	51	102	59	68

Figure S2368. Get High-res Image Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DYRK1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 0.93

Table S6049. Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DYRK1A MUTATED	2	0	3	2	0	1
DYRK1A WILD-TYPE	32	18	56	36	19	42

'DYRK1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.77

Table S6050. Gene #614: 'DYRK1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DYRK1A MUTATED	5	1	2
DYRK1A WILD-TYPE	117	50	36

'GALK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.51

Table S6051. Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GALK1 MUTATED	0	2	1	0	0
GALK1 WILD-TYPE	79	124	26	43	12

'GALK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.098

Table S6052. Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GALK1 MUTATED	3	0	0
GALK1 WILD-TYPE	75	86	85

Figure S2369. Get High-res Image Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GALK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0538 (Fisher's exact test), Q value = 0.14

Table S6053. Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GALK1 MUTATED	1	0	2	0
GALK1 WILD-TYPE	32	78	49	87

'GALK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.68

Table S6054. Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GALK1 MUTATED	2	1	0	1	0
GALK1 WILD-TYPE	63	58	42	33	57

'GALK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.25

Table S6055. Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GALK1 MUTATED	1	0	0	0	2	0	1
GALK1 WILD-TYPE	35	21	48	56	37	37	19

'GALK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S6056. Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GALK1 MUTATED	4	0	0
GALK1 WILD-TYPE	122	96	67

'GALK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.37

Table S6057. Gene #615: 'GALK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GALK1 MUTATED	2	2	0	0
GALK1 WILD-TYPE	54	103	60	68

'DENND1C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.66

Table S6058. Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DENND1C MUTATED	1	5	0	0	0
DENND1C WILD-TYPE	78	121	27	43	12

'DENND1C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.6

Table S6059. Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DENND1C MUTATED	1	4	1	1
DENND1C WILD-TYPE	70	72	33	62

'DENND1C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00946 (Fisher's exact test), Q value = 0.05

Table S6060. Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DENND1C MUTATED	4	0	0
DENND1C WILD-TYPE	74	86	85

Figure S2370. Get High-res Image Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DENND1C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0187 (Fisher's exact test), Q value = 0.074

Table S6061. Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DENND1C MUTATED	1	0	3	0
DENND1C WILD-TYPE	32	78	48	87

Figure S2371. Get High-res Image Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DENND1C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.12

Table S6062. Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DENND1C MUTATED	4	0	0	1	0
DENND1C WILD-TYPE	61	59	42	33	57

Figure S2372. Get High-res Image Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DENND1C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.54

Table S6063. Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DENND1C MUTATED	1	0	0	1	2	0	1
DENND1C WILD-TYPE	35	21	48	55	37	37	19

'DENND1C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.13

Table S6064. Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DENND1C MUTATED	6	0	1
DENND1C WILD-TYPE	120	96	66

Figure S2373. Get High-res Image Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DENND1C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0956 (Fisher's exact test), Q value = 0.2

Table S6065. Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DENND1C MUTATED	4	2	0	1
DENND1C WILD-TYPE	52	103	60	67

'DENND1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.65

Table S6066. Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DENND1C MUTATED	2	0	3	1	0	0
DENND1C WILD-TYPE	32	18	56	37	19	43

'DENND1C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0926 (Fisher's exact test), Q value = 0.2

Table S6067. Gene #616: 'DENND1C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DENND1C MUTATED	3	0	3
DENND1C WILD-TYPE	119	51	35

'CNKSR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.37

Table S6068. Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CNKSR1 MUTATED	0	6	0	1	0
CNKSR1 WILD-TYPE	79	120	27	42	12

'CNKSR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.08

Table S6069. Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CNKSR1 MUTATED	0	5	1	0
CNKSR1 WILD-TYPE	71	71	33	63

Figure S2374. Get High-res Image Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CNKSR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.41

Table S6070. Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CNKSR1 MUTATED	4	1	1
CNKSR1 WILD-TYPE	74	85	84

'CNKSR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.069

Table S6071. Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CNKSR1 MUTATED	1	1	4	0
CNKSR1 WILD-TYPE	32	77	47	87

Figure S2375. Get High-res Image Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CNKSR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.44

Table S6072. Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CNKSR1 MUTATED	4	0	1	1	1
CNKSR1 WILD-TYPE	61	59	41	33	56

'CNKSR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00106 (Fisher's exact test), Q value = 0.013

Table S6073. Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CNKSR1 MUTATED	0	0	0	1	2	0	4
CNKSR1 WILD-TYPE	36	21	48	55	37	37	16

Figure S2376. Get High-res Image Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CNKSR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0093 (Fisher's exact test), Q value = 0.05

Table S6074. Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CNKSR1 MUTATED	7	0	0
CNKSR1 WILD-TYPE	119	96	67

Figure S2377. Get High-res Image Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CNKSR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.036 (Fisher's exact test), Q value = 0.11

Table S6075. Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CNKSR1 MUTATED	4	3	0	0
CNKSR1 WILD-TYPE	52	102	60	68

Figure S2378. Get High-res Image Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CNKSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.3

Table S6076. Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CNKSR1 MUTATED	0	0	1	3	0	0
CNKSR1 WILD-TYPE	34	18	58	35	19	43

'CNKSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.71

Table S6077. Gene #617: 'CNKSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CNKSR1 MUTATED	3	0	1
CNKSR1 WILD-TYPE	119	51	37

'MYCT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.62

Table S6078. Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MYCT1 MUTATED	1	2	1	2	0
MYCT1 WILD-TYPE	78	124	26	41	12

'MYCT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.37

Table S6079. Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MYCT1 MUTATED	3	1	0	0
MYCT1 WILD-TYPE	68	75	34	63

'MYCT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.28

Table S6080. Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MYCT1 MUTATED	3	0	2
MYCT1 WILD-TYPE	75	86	83

'MYCT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.39

Table S6081. Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MYCT1 MUTATED	0	1	3	1
MYCT1 WILD-TYPE	33	77	48	86

'MYCT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.45

Table S6082. Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MYCT1 MUTATED	3	0	0	1	1
MYCT1 WILD-TYPE	62	59	42	33	56

'MYCT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 0.53

Table S6083. Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MYCT1 MUTATED	0	0	0	1	1	2	1
MYCT1 WILD-TYPE	36	21	48	55	38	35	19

'MYCT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.25

Table S6084. Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MYCT1 MUTATED	4	0	2
MYCT1 WILD-TYPE	122	96	65

'MYCT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.066

Table S6085. Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MYCT1 MUTATED	3	0	0	3
MYCT1 WILD-TYPE	53	105	60	65

Figure S2379. Get High-res Image Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MYCT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.73

Table S6086. Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MYCT1 MUTATED	1	0	1	2	0	0
MYCT1 WILD-TYPE	33	18	58	36	19	43

'MYCT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.49

Table S6087. Gene #618: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MYCT1 MUTATED	4	0	0
MYCT1 WILD-TYPE	118	51	38

'ATRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 0.61

Table S6088. Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATRIP MUTATED	0	4	0	1	0
ATRIP WILD-TYPE	79	122	27	42	12

'ATRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.11

Table S6089. Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATRIP MUTATED	0	4	0	0
ATRIP WILD-TYPE	71	72	34	63

Figure S2380. Get High-res Image Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATRIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00249 (Fisher's exact test), Q value = 0.023

Table S6090. Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ATRIP MUTATED	5	0	0
ATRIP WILD-TYPE	73	86	85

Figure S2381. Get High-res Image Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATRIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.0099

Table S6091. Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ATRIP MUTATED	0	0	5	0
ATRIP WILD-TYPE	33	78	46	87

Figure S2382. Get High-res Image Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.14

Table S6092. Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ATRIP MUTATED	3	0	0	2	0
ATRIP WILD-TYPE	62	59	42	32	57

'ATRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0031

Table S6093. Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ATRIP MUTATED	0	0	0	0	1	0	4
ATRIP WILD-TYPE	36	21	48	56	38	37	16

Figure S2383. Get High-res Image Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.32

Table S6094. Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ATRIP MUTATED	4	0	1
ATRIP WILD-TYPE	122	96	66

'ATRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.18

Table S6095. Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ATRIP MUTATED	3	2	0	0
ATRIP WILD-TYPE	53	103	60	68

'ATRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.18

Table S6096. Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ATRIP MUTATED	1	0	0	3	0	0
ATRIP WILD-TYPE	33	18	59	35	19	43

'ATRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0441 (Fisher's exact test), Q value = 0.12

Table S6097. Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ATRIP MUTATED	1	0	3
ATRIP WILD-TYPE	121	51	35

Figure S2384. Get High-res Image Gene #619: 'ATRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TIMP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 0.58

Table S6098. Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TIMP3 MUTATED	2	3	0	0	1
TIMP3 WILD-TYPE	77	123	27	43	11

'TIMP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.53

Table S6099. Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TIMP3 MUTATED	1	3	1	0
TIMP3 WILD-TYPE	70	73	33	63

'TIMP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.51

Table S6100. Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TIMP3 MUTATED	2	0	2
TIMP3 WILD-TYPE	76	86	83

'TIMP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.37

Table S6101. Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TIMP3 MUTATED	0	2	2	0
TIMP3 WILD-TYPE	33	76	49	87

'TIMP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.74

Table S6102. Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TIMP3 MUTATED	2	0	1	1	2
TIMP3 WILD-TYPE	63	59	41	33	55

'TIMP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.47

Table S6103. Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TIMP3 MUTATED	0	1	0	1	2	2	0
TIMP3 WILD-TYPE	36	20	48	55	37	35	20

'TIMP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.74

Table S6104. Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TIMP3 MUTATED	3	1	2
TIMP3 WILD-TYPE	123	95	65

'TIMP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.28

Table S6105. Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TIMP3 MUTATED	3	1	0	2
TIMP3 WILD-TYPE	53	104	60	66

'TIMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.28

Table S6106. Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TIMP3 MUTATED	2	0	0	1	0	0
TIMP3 WILD-TYPE	32	18	59	37	19	43

'TIMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S6107. Gene #620: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TIMP3 MUTATED	1	0	2
TIMP3 WILD-TYPE	121	51	36

'ELK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.56

Table S6108. Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ELK3 MUTATED	0	3	1	1	0
ELK3 WILD-TYPE	79	123	26	42	12

'ELK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.31

Table S6109. Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ELK3 MUTATED	0	4	1	1
ELK3 WILD-TYPE	71	72	33	62

'ELK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00295 (Fisher's exact test), Q value = 0.026

Table S6110. Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ELK3 MUTATED	5	0	0
ELK3 WILD-TYPE	73	86	85

Figure S2385. Get High-res Image Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ELK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00496 (Fisher's exact test), Q value = 0.034

Table S6111. Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ELK3 MUTATED	2	0	3	0
ELK3 WILD-TYPE	31	78	48	87

Figure S2386. Get High-res Image Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ELK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00189 (Fisher's exact test), Q value = 0.019

Table S6112. Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ELK3 MUTATED	6	0	0	0	0
ELK3 WILD-TYPE	59	59	42	34	57

Figure S2387. Get High-res Image Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ELK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 0.2

Table S6113. Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ELK3 MUTATED	0	0	0	2	2	0	2
ELK3 WILD-TYPE	36	21	48	54	37	37	18

'ELK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.078

Table S6114. Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ELK3 MUTATED	6	0	0
ELK3 WILD-TYPE	120	96	67

Figure S2388. Get High-res Image Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ELK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00226 (Fisher's exact test), Q value = 0.022

Table S6115. Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ELK3 MUTATED	5	1	0	0
ELK3 WILD-TYPE	51	104	60	68

Figure S2389. Get High-res Image Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ELK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.69

Table S6116. Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ELK3 MUTATED	1	1	3	1	0	0
ELK3 WILD-TYPE	33	17	56	37	19	43

'ELK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0904 (Fisher's exact test), Q value = 0.19

Table S6117. Gene #621: 'ELK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ELK3 MUTATED	3	0	3
ELK3 WILD-TYPE	119	51	35

'CD3EAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.17

Table S6118. Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CD3EAP MUTATED	0	6	0	0	1
CD3EAP WILD-TYPE	79	120	27	43	11

'CD3EAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.4

Table S6119. Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CD3EAP MUTATED	0	3	0	1
CD3EAP WILD-TYPE	71	73	34	62

'CD3EAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S6120. Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CD3EAP MUTATED	4	1	2
CD3EAP WILD-TYPE	74	85	83

'CD3EAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.37

Table S6121. Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CD3EAP MUTATED	0	3	3	1
CD3EAP WILD-TYPE	33	75	48	86

'CD3EAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.35

Table S6122. Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CD3EAP MUTATED	4	1	1	0	0
CD3EAP WILD-TYPE	61	58	41	34	57

'CD3EAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.31

Table S6123. Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CD3EAP MUTATED	2	0	0	3	0	0	1
CD3EAP WILD-TYPE	34	21	48	53	39	37	19

'CD3EAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.55

Table S6124. Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CD3EAP MUTATED	5	1	1
CD3EAP WILD-TYPE	121	95	66

'CD3EAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0817 (Fisher's exact test), Q value = 0.18

Table S6125. Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CD3EAP MUTATED	4	2	1	0
CD3EAP WILD-TYPE	52	103	59	68

'CD3EAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.62

Table S6126. Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CD3EAP MUTATED	0	0	2	2	0	0
CD3EAP WILD-TYPE	34	18	57	36	19	43

'CD3EAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.71

Table S6127. Gene #622: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CD3EAP MUTATED	3	0	1
CD3EAP WILD-TYPE	119	51	37

'MAPK15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.29

Table S6128. Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAPK15 MUTATED	0	5	0	1	1
MAPK15 WILD-TYPE	79	121	27	42	11

'MAPK15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.26

Table S6129. Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAPK15 MUTATED	0	3	0	0
MAPK15 WILD-TYPE	71	73	34	63

'MAPK15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.62

Table S6130. Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MAPK15 MUTATED	3	2	1
MAPK15 WILD-TYPE	75	84	84

'MAPK15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 0.89

Table S6131. Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MAPK15 MUTATED	0	2	2	2
MAPK15 WILD-TYPE	33	76	49	85

'MAPK15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.35

Table S6132. Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MAPK15 MUTATED	4	1	1	0	0
MAPK15 WILD-TYPE	61	58	41	34	57

'MAPK15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0149 (Fisher's exact test), Q value = 0.065

Table S6133. Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MAPK15 MUTATED	1	0	0	2	0	0	3
MAPK15 WILD-TYPE	35	21	48	54	39	37	17

Figure S2390. Get High-res Image Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAPK15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.55

Table S6134. Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MAPK15 MUTATED	5	1	1
MAPK15 WILD-TYPE	121	95	66

'MAPK15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.24

Table S6135. Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MAPK15 MUTATED	4	1	1	1
MAPK15 WILD-TYPE	52	104	59	67

'MAPK15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.64

Table S6136. Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MAPK15 MUTATED	0	0	1	2	0	0
MAPK15 WILD-TYPE	34	18	58	36	19	43

'MAPK15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 0.5

Table S6137. Gene #623: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MAPK15 MUTATED	1	1	1
MAPK15 WILD-TYPE	121	50	37

'PARP15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.57

Table S6138. Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PARP15 MUTATED	0	4	0	0	0
PARP15 WILD-TYPE	79	122	27	43	12

'PARP15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.63

Table S6139. Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PARP15 MUTATED	0	2	1	1
PARP15 WILD-TYPE	71	74	33	62

'PARP15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.76

Table S6140. Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PARP15 MUTATED	2	1	1
PARP15 WILD-TYPE	76	85	84

'PARP15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 0.87

Table S6141. Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PARP15 MUTATED	1	1	1	1
PARP15 WILD-TYPE	32	77	50	86

'PARP15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 0.21

Table S6142. Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PARP15 MUTATED	3	0	0	0	0
PARP15 WILD-TYPE	62	59	42	34	57

'PARP15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.34

Table S6143. Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PARP15 MUTATED	1	0	0	0	1	0	1
PARP15 WILD-TYPE	35	21	48	56	38	37	19

'PARP15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.65

Table S6144. Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PARP15 MUTATED	3	1	0
PARP15 WILD-TYPE	123	95	67

'PARP15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.44

Table S6145. Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PARP15 MUTATED	2	1	1	0
PARP15 WILD-TYPE	54	104	59	68

'PARP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.58

Table S6146. Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PARP15 MUTATED	1	0	3	0	0	0
PARP15 WILD-TYPE	33	18	56	38	19	43

'PARP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6147. Gene #624: 'PARP15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PARP15 MUTATED	3	1	0
PARP15 WILD-TYPE	119	50	38

'TM6SF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.29

Table S6148. Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TM6SF1 MUTATED	0	6	0	0	0
TM6SF1 WILD-TYPE	79	120	27	43	12

'TM6SF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 0.2

Table S6149. Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TM6SF1 MUTATED	0	3	1	0
TM6SF1 WILD-TYPE	71	73	33	63

'TM6SF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.29

Table S6150. Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TM6SF1 MUTATED	3	0	3
TM6SF1 WILD-TYPE	75	86	82

'TM6SF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.4

Table S6151. Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TM6SF1 MUTATED	1	1	3	1
TM6SF1 WILD-TYPE	32	77	48	86

'TM6SF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0986 (Fisher's exact test), Q value = 0.2

Table S6152. Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TM6SF1 MUTATED	4	0	1	1	0
TM6SF1 WILD-TYPE	61	59	41	33	57

'TM6SF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.35

Table S6153. Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TM6SF1 MUTATED	1	0	0	2	1	0	2
TM6SF1 WILD-TYPE	35	21	48	54	38	37	18

'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.29

Table S6154. Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TM6SF1 MUTATED	5	1	0
TM6SF1 WILD-TYPE	121	95	67

'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00266 (Fisher's exact test), Q value = 0.024

Table S6155. Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TM6SF1 MUTATED	5	1	0	0
TM6SF1 WILD-TYPE	51	104	60	68

Figure S2391. Get High-res Image Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 0.84

Table S6156. Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TM6SF1 MUTATED	0	0	2	1	0	0
TM6SF1 WILD-TYPE	34	18	57	37	19	43

'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 0.82

Table S6157. Gene #625: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TM6SF1 MUTATED	3	0	0
TM6SF1 WILD-TYPE	119	51	38

'DDX50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0842 (Fisher's exact test), Q value = 0.18

Table S6158. Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DDX50 MUTATED	0	8	2	1	0
DDX50 WILD-TYPE	79	118	25	42	12

'DDX50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.063

Table S6159. Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DDX50 MUTATED	0	7	1	1
DDX50 WILD-TYPE	71	69	33	62

Figure S2392. Get High-res Image Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DDX50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.44

Table S6160. Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DDX50 MUTATED	4	1	3
DDX50 WILD-TYPE	74	85	82

'DDX50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.11

Table S6161. Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DDX50 MUTATED	1	1	5	1
DDX50 WILD-TYPE	32	77	46	86

Figure S2393. Get High-res Image Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDX50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00872 (Fisher's exact test), Q value = 0.048

Table S6162. Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DDX50 MUTATED	7	1	0	2	0
DDX50 WILD-TYPE	58	58	42	32	57

Figure S2394. Get High-res Image Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DDX50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.079

Table S6163. Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DDX50 MUTATED	3	0	0	1	4	0	2
DDX50 WILD-TYPE	33	21	48	55	35	37	18

Figure S2395. Get High-res Image Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DDX50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.13

Table S6164. Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DDX50 MUTATED	9	1	1
DDX50 WILD-TYPE	117	95	66

Figure S2396. Get High-res Image Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDX50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 0.065

Table S6165. Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DDX50 MUTATED	6	4	1	0
DDX50 WILD-TYPE	50	101	59	68

Figure S2397. Get High-res Image Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDX50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0762 (Fisher's exact test), Q value = 0.17

Table S6166. Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DDX50 MUTATED	0	3	2	3	0	1
DDX50 WILD-TYPE	34	15	57	35	19	42

'DDX50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.079

Table S6167. Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DDX50 MUTATED	3	1	5
DDX50 WILD-TYPE	119	50	33

Figure S2398. Get High-res Image Gene #626: 'DDX50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.66

Table S6168. Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC27 MUTATED	1	5	0	0	0
CCDC27 WILD-TYPE	78	121	27	43	12

'CCDC27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.43

Table S6169. Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CCDC27 MUTATED	0	3	0	2
CCDC27 WILD-TYPE	71	73	34	61

'CCDC27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.69

Table S6170. Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CCDC27 MUTATED	2	1	3
CCDC27 WILD-TYPE	76	85	82

'CCDC27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 0.81

Table S6171. Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CCDC27 MUTATED	1	1	2	2
CCDC27 WILD-TYPE	32	77	49	85

'CCDC27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.66

Table S6172. Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CCDC27 MUTATED	3	1	1	1	0
CCDC27 WILD-TYPE	62	58	41	33	57

'CCDC27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0475 (Fisher's exact test), Q value = 0.13

Table S6173. Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CCDC27 MUTATED	4	0	0	1	1	0	0
CCDC27 WILD-TYPE	32	21	48	55	38	37	20

Figure S2399. Get High-res Image Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.55

Table S6174. Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CCDC27 MUTATED	4	2	0
CCDC27 WILD-TYPE	122	94	67

'CCDC27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.43

Table S6175. Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CCDC27 MUTATED	3	1	1	1
CCDC27 WILD-TYPE	53	104	59	67

'CCDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 0.91

Table S6176. Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CCDC27 MUTATED	0	0	3	1	0	1
CCDC27 WILD-TYPE	34	18	56	37	19	42

'CCDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6177. Gene #627: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CCDC27 MUTATED	3	1	1
CCDC27 WILD-TYPE	119	50	37

'EPHB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.48

Table S6178. Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPHB6 MUTATED	1	7	1	1	1
EPHB6 WILD-TYPE	78	119	26	42	11

'EPHB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.11

Table S6179. Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPHB6 MUTATED	1	8	1	1
EPHB6 WILD-TYPE	70	68	33	62

Figure S2400. Get High-res Image Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPHB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00812 (Fisher's exact test), Q value = 0.046

Table S6180. Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EPHB6 MUTATED	7	3	0
EPHB6 WILD-TYPE	71	83	85

Figure S2401. Get High-res Image Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPHB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00428 (Fisher's exact test), Q value = 0.031

Table S6181. Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EPHB6 MUTATED	4	0	4	2
EPHB6 WILD-TYPE	29	78	47	85

Figure S2402. Get High-res Image Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00233 (Fisher's exact test), Q value = 0.022

Table S6182. Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EPHB6 MUTATED	8	0	0	1	1
EPHB6 WILD-TYPE	57	59	42	33	56

Figure S2403. Get High-res Image Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00603 (Fisher's exact test), Q value = 0.038

Table S6183. Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EPHB6 MUTATED	0	0	0	2	3	1	4
EPHB6 WILD-TYPE	36	21	48	54	36	36	16

Figure S2404. Get High-res Image Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.53

Table S6184. Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EPHB6 MUTATED	7	2	2
EPHB6 WILD-TYPE	119	94	65

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0458 (Fisher's exact test), Q value = 0.13

Table S6185. Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EPHB6 MUTATED	6	3	1	1
EPHB6 WILD-TYPE	50	102	59	67

Figure S2405. Get High-res Image Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.5

Table S6186. Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EPHB6 MUTATED	2	1	4	3	0	0
EPHB6 WILD-TYPE	32	17	55	35	19	43

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.3

Table S6187. Gene #628: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EPHB6 MUTATED	5	1	4
EPHB6 WILD-TYPE	117	50	34

'TRIP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.53

Table S6188. Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TRIP11 MUTATED	3	8	2	0	0
TRIP11 WILD-TYPE	76	118	25	43	12

'TRIP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.54

Table S6189. Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TRIP11 MUTATED	2	5	3	2
TRIP11 WILD-TYPE	69	71	31	61

'TRIP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.32

Table S6190. Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TRIP11 MUTATED	3	2	7
TRIP11 WILD-TYPE	75	84	78

'TRIP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.5

Table S6191. Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TRIP11 MUTATED	1	5	4	2
TRIP11 WILD-TYPE	32	73	47	85

'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.65

Table S6192. Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TRIP11 MUTATED	5	1	1	1	2
TRIP11 WILD-TYPE	60	58	41	33	55

'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.32

Table S6193. Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TRIP11 MUTATED	2	1	0	1	4	1	1
TRIP11 WILD-TYPE	34	20	48	55	35	36	19

'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 0.82

Table S6194. Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TRIP11 MUTATED	7	4	2
TRIP11 WILD-TYPE	119	92	65

'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S6195. Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TRIP11 MUTATED	3	5	2	3
TRIP11 WILD-TYPE	53	100	58	65

'TRIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.7

Table S6196. Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TRIP11 MUTATED	2	1	6	1	1	1
TRIP11 WILD-TYPE	32	17	53	37	18	42

'TRIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.64

Table S6197. Gene #629: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TRIP11 MUTATED	9	2	1
TRIP11 WILD-TYPE	113	49	37

'ITGAV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.65

Table S6198. Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ITGAV MUTATED	5	6	0	1	1
ITGAV WILD-TYPE	74	120	27	42	11

'ITGAV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.24

Table S6199. Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ITGAV MUTATED	5	5	1	0
ITGAV WILD-TYPE	66	71	33	63

'ITGAV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 0.83

Table S6200. Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ITGAV MUTATED	3	4	2
ITGAV WILD-TYPE	75	82	83

'ITGAV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 0.97

Table S6201. Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ITGAV MUTATED	1	2	2	4
ITGAV WILD-TYPE	32	76	49	83

'ITGAV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 0.79

Table S6202. Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ITGAV MUTATED	4	1	1	2	3
ITGAV WILD-TYPE	61	58	41	32	54

'ITGAV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.42

Table S6203. Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ITGAV MUTATED	2	0	0	3	3	1	2
ITGAV WILD-TYPE	34	21	48	53	36	36	18

'ITGAV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S6204. Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ITGAV MUTATED	8	1	4
ITGAV WILD-TYPE	118	95	63

'ITGAV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.054

Table S6205. Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ITGAV MUTATED	7	3	0	3
ITGAV WILD-TYPE	49	102	60	65

Figure S2406. Get High-res Image Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.28

Table S6206. Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ITGAV MUTATED	3	1	1	3	1	0
ITGAV WILD-TYPE	31	17	58	35	18	43

'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00128 (Fisher's exact test), Q value = 0.015

Table S6207. Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ITGAV MUTATED	3	0	6
ITGAV WILD-TYPE	119	51	32

Figure S2407. Get High-res Image Gene #630: 'ITGAV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BCL2L14 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6208. Gene #631: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BCL2L14 MUTATED	1	2	0	0	0
BCL2L14 WILD-TYPE	78	124	27	43	12

'BCL2L14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6209. Gene #631: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BCL2L14 MUTATED	1	1	1
BCL2L14 WILD-TYPE	77	85	84

'BCL2L14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.53

Table S6210. Gene #631: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BCL2L14 MUTATED	1	0	1	1
BCL2L14 WILD-TYPE	32	78	50	86

'BCL2L14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 0.19

Table S6211. Gene #631: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BCL2L14 MUTATED	1	0	0	2	0
BCL2L14 WILD-TYPE	64	59	42	32	57

'BCL2L14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0695 (Fisher's exact test), Q value = 0.16

Table S6212. Gene #631: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BCL2L14 MUTATED	0	0	0	0	2	0	1
BCL2L14 WILD-TYPE	36	21	48	56	37	37	19

'BCL2L14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 0.85

Table S6213. Gene #631: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BCL2L14 MUTATED	2	1	0
BCL2L14 WILD-TYPE	124	95	67

'BCL2L14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0522 (Fisher's exact test), Q value = 0.14

Table S6214. Gene #631: 'BCL2L14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BCL2L14 MUTATED	2	0	1	0
BCL2L14 WILD-TYPE	54	105	59	68

'CDX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.71

Table S6215. Gene #632: 'CDX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDX2 MUTATED	0	2	0	1	0
CDX2 WILD-TYPE	79	124	27	42	12

'CDX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.43

Table S6216. Gene #632: 'CDX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CDX2 MUTATED	2	1	0
CDX2 WILD-TYPE	76	85	85

'CDX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S6217. Gene #632: 'CDX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CDX2 MUTATED	1	0	1	1
CDX2 WILD-TYPE	32	78	50	86

'CDX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 0.74

Table S6218. Gene #632: 'CDX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CDX2 MUTATED	2	1	0	0	0
CDX2 WILD-TYPE	63	58	42	34	57

'CDX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.44

Table S6219. Gene #632: 'CDX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CDX2 MUTATED	2	0	0	1	0	0	0
CDX2 WILD-TYPE	34	21	48	55	39	37	20

'CDX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.45

Table S6220. Gene #632: 'CDX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CDX2 MUTATED	3	0	0
CDX2 WILD-TYPE	123	96	67

'CDX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.36

Table S6221. Gene #632: 'CDX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CDX2 MUTATED	2	1	0	0
CDX2 WILD-TYPE	54	104	60	68

'SLC7A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.58

Table S6222. Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC7A10 MUTATED	0	4	0	0	0
SLC7A10 WILD-TYPE	79	122	27	43	12

'SLC7A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.22

Table S6223. Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC7A10 MUTATED	0	4	0	1
SLC7A10 WILD-TYPE	71	72	34	62

'SLC7A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.51

Table S6224. Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC7A10 MUTATED	2	0	2
SLC7A10 WILD-TYPE	76	86	83

'SLC7A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 0.94

Table S6225. Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC7A10 MUTATED	0	2	1	1
SLC7A10 WILD-TYPE	33	76	50	86

'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.32

Table S6226. Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC7A10 MUTATED	3	0	1	1	0
SLC7A10 WILD-TYPE	62	59	41	33	57

'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S6227. Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC7A10 MUTATED	1	0	0	2	1	0	1
SLC7A10 WILD-TYPE	35	21	48	54	38	37	19

'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.43

Table S6228. Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC7A10 MUTATED	4	1	0
SLC7A10 WILD-TYPE	122	95	67

'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.4

Table S6229. Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC7A10 MUTATED	2	3	0	0
SLC7A10 WILD-TYPE	54	102	60	68

'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.4

Table S6230. Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLC7A10 MUTATED	1	0	1	3	0	0
SLC7A10 WILD-TYPE	33	18	58	35	19	43

'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.41

Table S6231. Gene #633: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLC7A10 MUTATED	3	0	2
SLC7A10 WILD-TYPE	119	51	36

'RGS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.71

Table S6232. Gene #634: 'RGS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RGS2 MUTATED	0	2	0	1	0
RGS2 WILD-TYPE	79	124	27	42	12

'RGS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.53

Table S6233. Gene #634: 'RGS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RGS2 MUTATED	1	0	2
RGS2 WILD-TYPE	77	86	83

'RGS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.39

Table S6234. Gene #634: 'RGS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RGS2 MUTATED	0	0	2	1
RGS2 WILD-TYPE	33	78	49	86

'RGS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 0.91

Table S6235. Gene #634: 'RGS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RGS2 MUTATED	1	0	1	0	1
RGS2 WILD-TYPE	64	59	41	34	56

'RGS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.56

Table S6236. Gene #634: 'RGS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RGS2 MUTATED	0	0	0	1	0	1	1
RGS2 WILD-TYPE	36	21	48	55	39	36	19

'RGS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 0.85

Table S6237. Gene #634: 'RGS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RGS2 MUTATED	2	1	0
RGS2 WILD-TYPE	124	95	67

'RGS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S6238. Gene #634: 'RGS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RGS2 MUTATED	2	0	0	1
RGS2 WILD-TYPE	54	105	60	67

'SAMD9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.25

Table S6239. Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SAMD9L MUTATED	1	11	2	4	0
SAMD9L WILD-TYPE	78	115	25	39	12

'SAMD9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.1

Table S6240. Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SAMD9L MUTATED	1	8	4	2
SAMD9L WILD-TYPE	70	68	30	61

Figure S2408. Get High-res Image Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SAMD9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.14

Table S6241. Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SAMD9L MUTATED	10	4	3
SAMD9L WILD-TYPE	68	82	82

'SAMD9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0831 (Fisher's exact test), Q value = 0.18

Table S6242. Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SAMD9L MUTATED	3	2	7	5
SAMD9L WILD-TYPE	30	76	44	82

'SAMD9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00512 (Fisher's exact test), Q value = 0.035

Table S6243. Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SAMD9L MUTATED	11	1	1	1	2
SAMD9L WILD-TYPE	54	58	41	33	55

Figure S2409. Get High-res Image Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SAMD9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.063

Table S6244. Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SAMD9L MUTATED	5	1	0	2	3	1	4
SAMD9L WILD-TYPE	31	20	48	54	36	36	16

Figure S2410. Get High-res Image Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SAMD9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.061

Table S6245. Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SAMD9L MUTATED	14	2	2
SAMD9L WILD-TYPE	112	94	65

Figure S2411. Get High-res Image Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SAMD9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0267 (Fisher's exact test), Q value = 0.092

Table S6246. Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SAMD9L MUTATED	8	7	2	1
SAMD9L WILD-TYPE	48	98	58	67

Figure S2412. Get High-res Image Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SAMD9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.57

Table S6247. Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SAMD9L MUTATED	2	0	6	3	0	1
SAMD9L WILD-TYPE	32	18	53	35	19	42

'SAMD9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.6

Table S6248. Gene #635: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SAMD9L MUTATED	9	1	2
SAMD9L WILD-TYPE	113	50	36

'DUSP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.57

Table S6249. Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DUSP11 MUTATED	0	4	0	0	0
DUSP11 WILD-TYPE	79	122	27	43	12

'DUSP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S6250. Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DUSP11 MUTATED	0	3	0	0
DUSP11 WILD-TYPE	71	73	34	63

'DUSP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.097

Table S6251. Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DUSP11 MUTATED	3	0	0
DUSP11 WILD-TYPE	75	86	85

Figure S2413. Get High-res Image Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DUSP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0545 (Fisher's exact test), Q value = 0.14

Table S6252. Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DUSP11 MUTATED	1	0	2	0
DUSP11 WILD-TYPE	32	78	49	87

'DUSP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.37

Table S6253. Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DUSP11 MUTATED	2	0	0	1	0
DUSP11 WILD-TYPE	63	59	42	33	57

'DUSP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.76

Table S6254. Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DUSP11 MUTATED	0	0	0	2	1	0	0
DUSP11 WILD-TYPE	36	21	48	54	38	37	20

'DUSP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S6255. Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DUSP11 MUTATED	4	0	0
DUSP11 WILD-TYPE	122	96	67

'DUSP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0635 (Fisher's exact test), Q value = 0.16

Table S6256. Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DUSP11 MUTATED	3	1	0	0
DUSP11 WILD-TYPE	53	104	60	68

'DUSP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.45

Table S6257. Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DUSP11 MUTATED	0	1	2	0	0	0
DUSP11 WILD-TYPE	34	17	57	38	19	43

'DUSP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S6258. Gene #636: 'DUSP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DUSP11 MUTATED	1	0	2
DUSP11 WILD-TYPE	121	51	36

'MRPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.26

Table S6259. Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MRPL2 MUTATED	0	4	0	0	1
MRPL2 WILD-TYPE	79	122	27	43	11

'MRPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.4

Table S6260. Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MRPL2 MUTATED	0	3	0	1
MRPL2 WILD-TYPE	71	73	34	62

'MRPL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.36

Table S6261. Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MRPL2 MUTATED	2	0	3
MRPL2 WILD-TYPE	76	86	82

'MRPL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0892 (Fisher's exact test), Q value = 0.19

Table S6262. Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MRPL2 MUTATED	0	2	3	0
MRPL2 WILD-TYPE	33	76	48	87

'MRPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.064

Table S6263. Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MRPL2 MUTATED	5	0	0	1	0
MRPL2 WILD-TYPE	60	59	42	33	57

Figure S2414. Get High-res Image Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MRPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.59

Table S6264. Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MRPL2 MUTATED	1	0	0	2	2	0	1
MRPL2 WILD-TYPE	35	21	48	54	37	37	19

'MRPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.077

Table S6265. Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MRPL2 MUTATED	6	0	0
MRPL2 WILD-TYPE	120	96	67

Figure S2415. Get High-res Image Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MRPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0283 (Fisher's exact test), Q value = 0.094

Table S6266. Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MRPL2 MUTATED	4	2	0	0
MRPL2 WILD-TYPE	52	103	60	68

Figure S2416. Get High-res Image Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MRPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.73

Table S6267. Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MRPL2 MUTATED	1	0	1	2	0	0
MRPL2 WILD-TYPE	33	18	58	36	19	43

'MRPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.31

Table S6268. Gene #637: 'MRPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MRPL2 MUTATED	2	0	2
MRPL2 WILD-TYPE	120	51	36

'SLC4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.14

Table S6269. Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC4A3 MUTATED	1	10	0	2	2
SLC4A3 WILD-TYPE	78	116	27	41	10

'SLC4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0525 (Fisher's exact test), Q value = 0.14

Table S6270. Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC4A3 MUTATED	1	7	3	1
SLC4A3 WILD-TYPE	70	69	31	62

'SLC4A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.4

Table S6271. Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC4A3 MUTATED	6	2	4
SLC4A3 WILD-TYPE	72	84	81

'SLC4A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.4

Table S6272. Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC4A3 MUTATED	4	3	2	3
SLC4A3 WILD-TYPE	29	75	49	84

'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.21

Table S6273. Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC4A3 MUTATED	8	2	1	2	1
SLC4A3 WILD-TYPE	57	57	41	32	56

'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0027

Table S6274. Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC4A3 MUTATED	2	0	1	3	1	0	7
SLC4A3 WILD-TYPE	34	21	47	53	38	37	13

Figure S2417. Get High-res Image Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.1

Table S6275. Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC4A3 MUTATED	11	1	3
SLC4A3 WILD-TYPE	115	95	64

Figure S2418. Get High-res Image Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.083

Table S6276. Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC4A3 MUTATED	7	5	0	3
SLC4A3 WILD-TYPE	49	100	60	65

Figure S2419. Get High-res Image Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.22

Table S6277. Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLC4A3 MUTATED	1	1	4	5	0	0
SLC4A3 WILD-TYPE	33	17	55	33	19	43

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S6278. Gene #638: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLC4A3 MUTATED	8	0	3
SLC4A3 WILD-TYPE	114	51	35

'ZDHHC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.52

Table S6279. Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZDHHC5 MUTATED	2	6	2	0	0
ZDHHC5 WILD-TYPE	77	120	25	43	12

'ZDHHC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 0.94

Table S6280. Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZDHHC5 MUTATED	2	4	1	2
ZDHHC5 WILD-TYPE	69	72	33	61

'ZDHHC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.066

Table S6281. Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZDHHC5 MUTATED	7	1	1
ZDHHC5 WILD-TYPE	71	85	84

Figure S2420. Get High-res Image Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZDHHC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0341 (Fisher's exact test), Q value = 0.11

Table S6282. Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZDHHC5 MUTATED	2	3	4	0
ZDHHC5 WILD-TYPE	31	75	47	87

Figure S2421. Get High-res Image Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZDHHC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S6283. Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZDHHC5 MUTATED	5	0	2	0	2
ZDHHC5 WILD-TYPE	60	59	40	34	55

'ZDHHC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.56

Table S6284. Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZDHHC5 MUTATED	2	0	0	4	2	1	0
ZDHHC5 WILD-TYPE	34	21	48	52	37	36	20

'ZDHHC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.32

Table S6285. Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZDHHC5 MUTATED	7	1	2
ZDHHC5 WILD-TYPE	119	95	65

'ZDHHC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.75

Table S6286. Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZDHHC5 MUTATED	3	3	1	3
ZDHHC5 WILD-TYPE	53	102	59	65

'ZDHHC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 0.79

Table S6287. Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZDHHC5 MUTATED	3	1	3	1	0	1
ZDHHC5 WILD-TYPE	31	17	56	37	19	42

'ZDHHC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.56

Table S6288. Gene #639: 'ZDHHC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZDHHC5 MUTATED	5	1	3
ZDHHC5 WILD-TYPE	117	50	35

'GCDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.31

Table S6289. Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GCDH MUTATED	0	7	0	1	0
GCDH WILD-TYPE	79	119	27	42	12

'GCDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.43

Table S6290. Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GCDH MUTATED	0	3	0	2
GCDH WILD-TYPE	71	73	34	61

'GCDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00111 (Fisher's exact test), Q value = 0.014

Table S6291. Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GCDH MUTATED	7	0	1
GCDH WILD-TYPE	71	86	84

Figure S2422. Get High-res Image Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GCDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.057

Table S6292. Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GCDH MUTATED	1	2	5	0
GCDH WILD-TYPE	32	76	46	87

Figure S2423. Get High-res Image Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GCDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.082

Table S6293. Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GCDH MUTATED	5	0	1	0	0
GCDH WILD-TYPE	60	59	41	34	57

Figure S2424. Get High-res Image Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GCDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.066

Table S6294. Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GCDH MUTATED	1	0	0	2	0	0	3
GCDH WILD-TYPE	35	21	48	54	39	37	17

Figure S2425. Get High-res Image Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GCDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0041 (Fisher's exact test), Q value = 0.03

Table S6295. Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GCDH MUTATED	8	0	0
GCDH WILD-TYPE	118	96	67

Figure S2426. Get High-res Image Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GCDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0276 (Fisher's exact test), Q value = 0.094

Table S6296. Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GCDH MUTATED	5	2	0	1
GCDH WILD-TYPE	51	103	60	67

Figure S2427. Get High-res Image Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GCDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 0.93

Table S6297. Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GCDH MUTATED	1	0	2	1	0	0
GCDH WILD-TYPE	33	18	57	37	19	43

'GCDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.31

Table S6298. Gene #640: 'GCDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GCDH MUTATED	2	0	2
GCDH WILD-TYPE	120	51	36

'BTNL8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 0.98

Table S6299. Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
BTNL8 MUTATED	1	4	0	1	0
BTNL8 WILD-TYPE	78	122	27	42	12

'BTNL8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 0.82

Table S6300. Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
BTNL8 MUTATED	2	1	0	2
BTNL8 WILD-TYPE	69	75	34	61

'BTNL8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.16

Table S6301. Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
BTNL8 MUTATED	1	0	4
BTNL8 WILD-TYPE	77	86	81

'BTNL8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 0.96

Table S6302. Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
BTNL8 MUTATED	1	1	1	2
BTNL8 WILD-TYPE	32	77	50	85

'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.24

Table S6303. Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
BTNL8 MUTATED	4	0	0	0	2
BTNL8 WILD-TYPE	61	59	42	34	55

'BTNL8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.67

Table S6304. Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
BTNL8 MUTATED	2	0	0	1	1	1	1
BTNL8 WILD-TYPE	34	21	48	55	38	36	19

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.67

Table S6305. Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
BTNL8 MUTATED	4	1	1
BTNL8 WILD-TYPE	122	95	66

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.64

Table S6306. Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
BTNL8 MUTATED	2	2	0	2
BTNL8 WILD-TYPE	54	103	60	66

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 0.99

Table S6307. Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
BTNL8 MUTATED	0	0	2	1	0	1
BTNL8 WILD-TYPE	34	18	57	37	19	42

'BTNL8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.71

Table S6308. Gene #641: 'BTNL8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
BTNL8 MUTATED	3	0	1
BTNL8 WILD-TYPE	119	51	37

'RASA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S6309. Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RASA2 MUTATED	0	6	0	1	1
RASA2 WILD-TYPE	79	120	27	42	11

'RASA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.43

Table S6310. Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RASA2 MUTATED	0	3	0	2
RASA2 WILD-TYPE	71	73	34	61

'RASA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.44

Table S6311. Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RASA2 MUTATED	4	1	3
RASA2 WILD-TYPE	74	85	82

'RASA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.3

Table S6312. Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RASA2 MUTATED	1	2	4	1
RASA2 WILD-TYPE	32	76	47	86

'RASA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.78

Table S6313. Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RASA2 MUTATED	3	2	0	1	1
RASA2 WILD-TYPE	62	57	42	33	56

'RASA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.7

Table S6314. Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RASA2 MUTATED	2	0	1	1	2	0	1
RASA2 WILD-TYPE	34	21	47	55	37	37	19

'RASA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0614 (Fisher's exact test), Q value = 0.15

Table S6315. Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RASA2 MUTATED	7	1	0
RASA2 WILD-TYPE	119	95	67

'RASA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.072

Table S6316. Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RASA2 MUTATED	5	2	1	0
RASA2 WILD-TYPE	51	103	59	68

Figure S2428. Get High-res Image Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RASA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 0.81

Table S6317. Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RASA2 MUTATED	1	0	2	0	0	0
RASA2 WILD-TYPE	33	18	57	38	19	43

'RASA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.5

Table S6318. Gene #642: 'RASA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RASA2 MUTATED	1	1	1
RASA2 WILD-TYPE	121	50	37

'PIK3R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 0.83

Table S6319. Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIK3R1 MUTATED	2	7	0	1	0
PIK3R1 WILD-TYPE	77	119	27	42	12

'PIK3R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.36

Table S6320. Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIK3R1 MUTATED	1	5	0	1
PIK3R1 WILD-TYPE	70	71	34	62

'PIK3R1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.3

Table S6321. Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PIK3R1 MUTATED	5	1	3
PIK3R1 WILD-TYPE	73	85	82

'PIK3R1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.061

Table S6322. Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PIK3R1 MUTATED	0	2	6	1
PIK3R1 WILD-TYPE	33	76	45	86

Figure S2429. Get High-res Image Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.17

Table S6323. Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PIK3R1 MUTATED	3	0	0	3	3
PIK3R1 WILD-TYPE	62	59	42	31	54

'PIK3R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S6324. Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PIK3R1 MUTATED	1	0	0	1	3	2	2
PIK3R1 WILD-TYPE	35	21	48	55	36	35	18

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00849 (Fisher's exact test), Q value = 0.047

Table S6325. Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PIK3R1 MUTATED	9	0	1
PIK3R1 WILD-TYPE	117	96	66

Figure S2430. Get High-res Image Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.061

Table S6326. Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PIK3R1 MUTATED	6	2	0	2
PIK3R1 WILD-TYPE	50	103	60	66

Figure S2431. Get High-res Image Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.16

Table S6327. Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PIK3R1 MUTATED	0	0	5	0	1	0
PIK3R1 WILD-TYPE	34	18	54	38	18	43

'PIK3R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 0.2

Table S6328. Gene #643: 'PIK3R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PIK3R1 MUTATED	3	0	3
PIK3R1 WILD-TYPE	119	51	35

'CDC5L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S6329. Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CDC5L MUTATED	1	11	1	1	0
CDC5L WILD-TYPE	78	115	26	42	12

'CDC5L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.064

Table S6330. Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CDC5L MUTATED	1	8	0	1
CDC5L WILD-TYPE	70	68	34	62

Figure S2432. Get High-res Image Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDC5L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.063

Table S6331. Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CDC5L MUTATED	8	1	2
CDC5L WILD-TYPE	70	85	83

Figure S2433. Get High-res Image Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDC5L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 0.17

Table S6332. Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CDC5L MUTATED	1	2	6	2
CDC5L WILD-TYPE	32	76	45	85

'CDC5L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S6333. Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CDC5L MUTATED	7	2	0	3	2
CDC5L WILD-TYPE	58	57	42	31	55

'CDC5L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 0.17

Table S6334. Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CDC5L MUTATED	2	0	1	2	4	1	4
CDC5L WILD-TYPE	34	21	47	54	35	36	16

'CDC5L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.16

Table S6335. Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CDC5L MUTATED	11	3	1
CDC5L WILD-TYPE	115	93	66

'CDC5L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.0058

Table S6336. Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CDC5L MUTATED	10	3	1	1
CDC5L WILD-TYPE	46	102	59	67

Figure S2434. Get High-res Image Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CDC5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.62

Table S6337. Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CDC5L MUTATED	2	1	2	4	0	1
CDC5L WILD-TYPE	32	17	57	34	19	42

'CDC5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S6338. Gene #644: 'CDC5L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CDC5L MUTATED	5	2	3
CDC5L WILD-TYPE	117	49	35

'COL20A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.31

Table S6339. Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
COL20A1 MUTATED	2	12	2	1	1
COL20A1 WILD-TYPE	77	114	25	42	11

'COL20A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.057

Table S6340. Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
COL20A1 MUTATED	2	11	0	3
COL20A1 WILD-TYPE	69	65	34	60

Figure S2435. Get High-res Image Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COL20A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.067

Table S6341. Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
COL20A1 MUTATED	9	1	5
COL20A1 WILD-TYPE	69	85	80

Figure S2436. Get High-res Image Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'COL20A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00536 (Fisher's exact test), Q value = 0.036

Table S6342. Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
COL20A1 MUTATED	4	3	7	1
COL20A1 WILD-TYPE	29	75	44	86

Figure S2437. Get High-res Image Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'COL20A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00753 (Fisher's exact test), Q value = 0.044

Table S6343. Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
COL20A1 MUTATED	10	4	0	1	1
COL20A1 WILD-TYPE	55	55	42	33	56

Figure S2438. Get High-res Image Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'COL20A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S6344. Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
COL20A1 MUTATED	3	0	2	3	4	1	3
COL20A1 WILD-TYPE	33	21	46	53	35	36	17

'COL20A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.28

Table S6345. Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
COL20A1 MUTATED	12	4	2
COL20A1 WILD-TYPE	114	92	65

'COL20A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.0048

Table S6346. Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
COL20A1 MUTATED	11	2	3	2
COL20A1 WILD-TYPE	45	103	57	66

Figure S2439. Get High-res Image Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'COL20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.65

Table S6347. Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
COL20A1 MUTATED	4	2	3	4	0	3
COL20A1 WILD-TYPE	30	16	56	34	19	40

'COL20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.44

Table S6348. Gene #645: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
COL20A1 MUTATED	8	3	5
COL20A1 WILD-TYPE	114	48	33

'AP3M2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.22

Table S6349. Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AP3M2 MUTATED	1	6	0	1	2
AP3M2 WILD-TYPE	78	120	27	42	10

'AP3M2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.61

Table S6350. Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AP3M2 MUTATED	1	4	1	1
AP3M2 WILD-TYPE	70	72	33	62

'AP3M2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S6351. Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
AP3M2 MUTATED	6	2	1
AP3M2 WILD-TYPE	72	84	84

'AP3M2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0825 (Fisher's exact test), Q value = 0.18

Table S6352. Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
AP3M2 MUTATED	1	1	5	2
AP3M2 WILD-TYPE	32	77	46	85

'AP3M2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0867 (Fisher's exact test), Q value = 0.19

Table S6353. Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
AP3M2 MUTATED	4	1	4	1	0
AP3M2 WILD-TYPE	61	58	38	33	57

'AP3M2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S6354. Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
AP3M2 MUTATED	2	1	1	5	1	0	0
AP3M2 WILD-TYPE	34	20	47	51	38	37	20

'AP3M2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0585 (Fisher's exact test), Q value = 0.15

Table S6355. Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
AP3M2 MUTATED	8	2	0
AP3M2 WILD-TYPE	118	94	67

'AP3M2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0556 (Fisher's exact test), Q value = 0.14

Table S6356. Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
AP3M2 MUTATED	5	3	2	0
AP3M2 WILD-TYPE	51	102	58	68

'AP3M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.76

Table S6357. Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
AP3M2 MUTATED	1	1	2	1	0	0
AP3M2 WILD-TYPE	33	17	57	37	19	43

'AP3M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.41

Table S6358. Gene #646: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
AP3M2 MUTATED	3	0	2
AP3M2 WILD-TYPE	119	51	36

'NAA16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.36

Table S6359. Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NAA16 MUTATED	1	6	0	0	1
NAA16 WILD-TYPE	78	120	27	43	11

'NAA16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.46

Table S6360. Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NAA16 MUTATED	0	3	1	1
NAA16 WILD-TYPE	71	73	33	62

'NAA16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00987 (Fisher's exact test), Q value = 0.051

Table S6361. Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NAA16 MUTATED	6	0	2
NAA16 WILD-TYPE	72	86	83

Figure S2440. Get High-res Image Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NAA16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 0.16

Table S6362. Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NAA16 MUTATED	2	3	3	0
NAA16 WILD-TYPE	31	75	48	87

'NAA16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 0.18

Table S6363. Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NAA16 MUTATED	5	0	1	0	1
NAA16 WILD-TYPE	60	59	41	34	56

'NAA16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.31

Table S6364. Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NAA16 MUTATED	3	0	0	3	1	0	0
NAA16 WILD-TYPE	33	21	48	53	38	37	20

'NAA16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.093

Table S6365. Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NAA16 MUTATED	7	0	1
NAA16 WILD-TYPE	119	96	66

Figure S2441. Get High-res Image Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NAA16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.061

Table S6366. Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NAA16 MUTATED	5	1	0	2
NAA16 WILD-TYPE	51	104	60	66

Figure S2442. Get High-res Image Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NAA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.33

Table S6367. Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NAA16 MUTATED	2	0	4	0	0	0
NAA16 WILD-TYPE	32	18	55	38	19	43

'NAA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.55

Table S6368. Gene #647: 'NAA16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NAA16 MUTATED	5	0	1
NAA16 WILD-TYPE	117	51	37

'NPR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.27

Table S6369. Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NPR3 MUTATED	1	8	1	0	1
NPR3 WILD-TYPE	78	118	26	43	11

'NPR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.66

Table S6370. Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NPR3 MUTATED	1	3	2	2
NPR3 WILD-TYPE	70	73	32	61

'NPR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.12

Table S6371. Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NPR3 MUTATED	7	1	2
NPR3 WILD-TYPE	71	85	83

Figure S2443. Get High-res Image Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NPR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00416 (Fisher's exact test), Q value = 0.03

Table S6372. Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NPR3 MUTATED	3	2	5	0
NPR3 WILD-TYPE	30	76	46	87

Figure S2444. Get High-res Image Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NPR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 0.11

Table S6373. Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NPR3 MUTATED	7	1	0	1	1
NPR3 WILD-TYPE	58	58	42	33	56

Figure S2445. Get High-res Image Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NPR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.63

Table S6374. Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NPR3 MUTATED	3	0	1	2	1	1	2
NPR3 WILD-TYPE	33	21	47	54	38	36	18

'NPR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00531 (Fisher's exact test), Q value = 0.036

Table S6375. Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NPR3 MUTATED	10	1	0
NPR3 WILD-TYPE	116	95	67

Figure S2446. Get High-res Image Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NPR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0699 (Fisher's exact test), Q value = 0.17

Table S6376. Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NPR3 MUTATED	4	6	1	0
NPR3 WILD-TYPE	52	99	59	68

'NPR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.68

Table S6377. Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NPR3 MUTATED	2	1	3	0	0	1
NPR3 WILD-TYPE	32	17	56	38	19	42

'NPR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 0.92

Table S6378. Gene #648: 'NPR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NPR3 MUTATED	5	1	1
NPR3 WILD-TYPE	117	50	37

'COX8C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.45

Table S6379. Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
COX8C MUTATED	0	3	1	0	0
COX8C WILD-TYPE	79	123	26	43	12

'COX8C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.16

Table S6380. Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
COX8C MUTATED	0	1	2	0
COX8C WILD-TYPE	71	75	32	63

'COX8C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.099

Table S6381. Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
COX8C MUTATED	3	0	0
COX8C WILD-TYPE	75	86	85

Figure S2447. Get High-res Image Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'COX8C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 0.38

Table S6382. Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
COX8C MUTATED	0	0	2	1
COX8C WILD-TYPE	33	78	49	86

'COX8C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 0.21

Table S6383. Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
COX8C MUTATED	3	0	0	0	0
COX8C WILD-TYPE	62	59	42	34	57

'COX8C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00041 (Fisher's exact test), Q value = 0.0073

Table S6384. Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
COX8C MUTATED	0	0	0	0	0	0	3
COX8C WILD-TYPE	36	21	48	56	39	37	17

Figure S2448. Get High-res Image Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'COX8C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.76

Table S6385. Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
COX8C MUTATED	2	2	0
COX8C WILD-TYPE	124	94	67

'COX8C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 0.82

Table S6386. Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
COX8C MUTATED	1	2	1	0
COX8C WILD-TYPE	55	103	59	68

'COX8C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.42

Table S6387. Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
COX8C MUTATED	0	0	0	2	0	1
COX8C WILD-TYPE	34	18	59	36	19	42

'COX8C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6388. Gene #649: 'COX8C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
COX8C MUTATED	2	1	0
COX8C WILD-TYPE	120	50	38

'KLHDC8B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.74

Table S6389. Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KLHDC8B MUTATED	1	6	0	1	0
KLHDC8B WILD-TYPE	78	120	27	42	12

'KLHDC8B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S6390. Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KLHDC8B MUTATED	0	4	2	1
KLHDC8B WILD-TYPE	71	72	32	62

'KLHDC8B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 0.87

Table S6391. Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KLHDC8B MUTATED	3	2	3
KLHDC8B WILD-TYPE	75	84	82

'KLHDC8B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 0.96

Table S6392. Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KLHDC8B MUTATED	1	3	2	2
KLHDC8B WILD-TYPE	32	75	49	85

'KLHDC8B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S6393. Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KLHDC8B MUTATED	3	1	0	0	2
KLHDC8B WILD-TYPE	62	58	42	34	55

'KLHDC8B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.67

Table S6394. Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KLHDC8B MUTATED	2	0	0	1	1	1	1
KLHDC8B WILD-TYPE	34	21	48	55	38	36	19

'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.29

Table S6395. Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KLHDC8B MUTATED	6	2	0
KLHDC8B WILD-TYPE	120	94	67

'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.93

Table S6396. Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KLHDC8B MUTATED	2	3	2	1
KLHDC8B WILD-TYPE	54	102	58	67

'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 0.99

Table S6397. Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KLHDC8B MUTATED	0	0	2	1	0	1
KLHDC8B WILD-TYPE	34	18	57	37	19	42

'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.39

Table S6398. Gene #650: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KLHDC8B MUTATED	1	2	1
KLHDC8B WILD-TYPE	121	49	37

'ZBTB40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.54

Table S6399. Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZBTB40 MUTATED	1	5	1	2	1
ZBTB40 WILD-TYPE	78	121	26	41	11

'ZBTB40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.074

Table S6400. Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZBTB40 MUTATED	1	7	1	0
ZBTB40 WILD-TYPE	70	69	33	63

Figure S2449. Get High-res Image Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.21

Table S6401. Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZBTB40 MUTATED	6	2	1
ZBTB40 WILD-TYPE	72	84	84

'ZBTB40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.35

Table S6402. Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZBTB40 MUTATED	3	1	2	3
ZBTB40 WILD-TYPE	30	77	49	84

'ZBTB40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.64

Table S6403. Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZBTB40 MUTATED	3	0	1	1	2
ZBTB40 WILD-TYPE	62	59	41	33	55

'ZBTB40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.49

Table S6404. Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZBTB40 MUTATED	2	0	0	3	1	0	1
ZBTB40 WILD-TYPE	34	21	48	53	38	37	19

'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.32

Table S6405. Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZBTB40 MUTATED	7	1	2
ZBTB40 WILD-TYPE	119	95	65

'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S6406. Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZBTB40 MUTATED	5	3	1	1
ZBTB40 WILD-TYPE	51	102	59	67

'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.92

Table S6407. Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZBTB40 MUTATED	2	1	2	1	1	1
ZBTB40 WILD-TYPE	32	17	57	37	18	42

'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.23

Table S6408. Gene #651: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZBTB40 MUTATED	5	0	3
ZBTB40 WILD-TYPE	117	51	35

'FOLH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.5

Table S6409. Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FOLH1 MUTATED	1	7	2	1	0
FOLH1 WILD-TYPE	78	119	25	42	12

'FOLH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.6

Table S6410. Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FOLH1 MUTATED	2	5	1	1
FOLH1 WILD-TYPE	69	71	33	62

'FOLH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.55

Table S6411. Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FOLH1 MUTATED	5	2	4
FOLH1 WILD-TYPE	73	84	81

'FOLH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 0.55

Table S6412. Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FOLH1 MUTATED	2	2	4	3
FOLH1 WILD-TYPE	31	76	47	84

'FOLH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.67

Table S6413. Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FOLH1 MUTATED	3	2	1	1	0
FOLH1 WILD-TYPE	62	57	41	33	57

'FOLH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 0.84

Table S6414. Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FOLH1 MUTATED	2	0	1	2	1	0	1
FOLH1 WILD-TYPE	34	21	47	54	38	37	19

'FOLH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6415. Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FOLH1 MUTATED	5	4	2
FOLH1 WILD-TYPE	121	92	65

'FOLH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.47

Table S6416. Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FOLH1 MUTATED	4	2	3	2
FOLH1 WILD-TYPE	52	103	57	66

'FOLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.51

Table S6417. Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FOLH1 MUTATED	2	0	5	0	0	2
FOLH1 WILD-TYPE	32	18	54	38	19	41

'FOLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 0.94

Table S6418. Gene #652: 'FOLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FOLH1 MUTATED	5	2	2
FOLH1 WILD-TYPE	117	49	36

'TXLNG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.3

Table S6419. Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TXLNG MUTATED	0	6	1	0	0
TXLNG WILD-TYPE	79	120	26	43	12

'TXLNG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.15

Table S6420. Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TXLNG MUTATED	0	4	1	0
TXLNG WILD-TYPE	71	72	33	63

'TXLNG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00917 (Fisher's exact test), Q value = 0.049

Table S6421. Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TXLNG MUTATED	5	0	1
TXLNG WILD-TYPE	73	86	84

Figure S2450. Get High-res Image Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TXLNG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00432 (Fisher's exact test), Q value = 0.031

Table S6422. Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TXLNG MUTATED	0	0	5	1
TXLNG WILD-TYPE	33	78	46	86

Figure S2451. Get High-res Image Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TXLNG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.47

Table S6423. Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TXLNG MUTATED	3	1	0	1	0
TXLNG WILD-TYPE	62	58	42	33	57

'TXLNG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.37

Table S6424. Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TXLNG MUTATED	0	0	1	1	1	0	2
TXLNG WILD-TYPE	36	21	47	55	38	37	18

'TXLNG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.13

Table S6425. Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TXLNG MUTATED	6	0	1
TXLNG WILD-TYPE	120	96	66

Figure S2452. Get High-res Image Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TXLNG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0951 (Fisher's exact test), Q value = 0.2

Table S6426. Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TXLNG MUTATED	4	2	0	1
TXLNG WILD-TYPE	52	103	60	67

'TXLNG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.32

Table S6427. Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TXLNG MUTATED	1	2	1	1	0	0
TXLNG WILD-TYPE	33	16	58	37	19	43

'TXLNG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.41

Table S6428. Gene #653: 'TXLNG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TXLNG MUTATED	3	0	2
TXLNG WILD-TYPE	119	51	36

'SFTPC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.51

Table S6429. Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SFTPC MUTATED	0	2	1	0	0
SFTPC WILD-TYPE	79	124	26	43	12

'SFTPC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S6430. Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SFTPC MUTATED	0	3	0	0
SFTPC WILD-TYPE	71	73	34	63

'SFTPC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.53

Table S6431. Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SFTPC MUTATED	1	0	2
SFTPC WILD-TYPE	77	86	83

'SFTPC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.3

Table S6432. Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SFTPC MUTATED	0	1	2	0
SFTPC WILD-TYPE	33	77	49	87

'SFTPC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S6433. Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SFTPC MUTATED	1	0	1	1	0
SFTPC WILD-TYPE	64	59	41	33	57

'SFTPC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.76

Table S6434. Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SFTPC MUTATED	0	0	0	2	1	0	0
SFTPC WILD-TYPE	36	21	48	54	38	37	20

'SFTPC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.45

Table S6435. Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SFTPC MUTATED	3	0	0
SFTPC WILD-TYPE	123	96	67

'SFTPC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.36

Table S6436. Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SFTPC MUTATED	2	1	0	0
SFTPC WILD-TYPE	54	104	60	68

'SFTPC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S6437. Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SFTPC MUTATED	0	0	3	0	0	0
SFTPC WILD-TYPE	34	18	56	38	19	43

'SFTPC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.66

Table S6438. Gene #654: 'SFTPC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SFTPC MUTATED	2	0	1
SFTPC WILD-TYPE	120	51	37

'P2RX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.64

Table S6439. Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
P2RX1 MUTATED	0	3	0	0	0
P2RX1 WILD-TYPE	79	123	27	43	12

'P2RX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S6440. Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
P2RX1 MUTATED	0	3	0	0
P2RX1 WILD-TYPE	71	73	34	63

'P2RX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6441. Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
P2RX1 MUTATED	1	1	1
P2RX1 WILD-TYPE	125	95	66

'P2RX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.77

Table S6442. Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
P2RX1 MUTATED	1	1	1	0
P2RX1 WILD-TYPE	55	104	59	68

'P2RX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.62

Table S6443. Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
P2RX1 MUTATED	0	1	1	1	0	0
P2RX1 WILD-TYPE	34	17	58	37	19	43

'P2RX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.12

Table S6444. Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
P2RX1 MUTATED	0	1	2
P2RX1 WILD-TYPE	122	50	36

Figure S2453. Get High-res Image Gene #655: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CORIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 0.8

Table S6445. Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CORIN MUTATED	2	5	1	1	1
CORIN WILD-TYPE	77	121	26	42	11

'CORIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 0.18

Table S6446. Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CORIN MUTATED	1	5	2	0
CORIN WILD-TYPE	70	71	32	63

'CORIN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 0.2

Table S6447. Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CORIN MUTATED	6	1	3
CORIN WILD-TYPE	72	85	82

'CORIN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00711 (Fisher's exact test), Q value = 0.042

Table S6448. Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CORIN MUTATED	2	1	6	1
CORIN WILD-TYPE	31	77	45	86

Figure S2454. Get High-res Image Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CORIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S6449. Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CORIN MUTATED	5	0	1	2	1
CORIN WILD-TYPE	60	59	41	32	56

'CORIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0356 (Fisher's exact test), Q value = 0.11

Table S6450. Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CORIN MUTATED	0	0	0	2	3	1	3
CORIN WILD-TYPE	36	21	48	54	36	36	17

Figure S2455. Get High-res Image Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CORIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.18

Table S6451. Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CORIN MUTATED	8	1	1
CORIN WILD-TYPE	118	95	66

'CORIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-04 (Fisher's exact test), Q value = 0.0072

Table S6452. Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CORIN MUTATED	7	0	1	2
CORIN WILD-TYPE	49	105	59	66

Figure S2456. Get High-res Image Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CORIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 0.89

Table S6453. Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CORIN MUTATED	1	0	4	1	0	1
CORIN WILD-TYPE	33	18	55	37	19	42

'CORIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.35

Table S6454. Gene #656: 'CORIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CORIN MUTATED	3	1	3
CORIN WILD-TYPE	119	50	35

'ACSS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0699 (Fisher's exact test), Q value = 0.17

Table S6455. Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ACSS2 MUTATED	0	8	1	0	0
ACSS2 WILD-TYPE	79	118	26	43	12

'ACSS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 0.6

Table S6456. Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ACSS2 MUTATED	1	4	1	1
ACSS2 WILD-TYPE	70	72	33	62

'ACSS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 0.15

Table S6457. Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ACSS2 MUTATED	4	0	5
ACSS2 WILD-TYPE	74	86	80

'ACSS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00236 (Fisher's exact test), Q value = 0.022

Table S6458. Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ACSS2 MUTATED	0	3	6	0
ACSS2 WILD-TYPE	33	75	45	87

Figure S2457. Get High-res Image Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ACSS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.52

Table S6459. Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ACSS2 MUTATED	4	2	1	1	0
ACSS2 WILD-TYPE	61	57	41	33	57

'ACSS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.28

Table S6460. Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ACSS2 MUTATED	1	0	1	4	0	0	2
ACSS2 WILD-TYPE	35	21	47	52	39	37	18

'ACSS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.3

Table S6461. Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ACSS2 MUTATED	6	3	0
ACSS2 WILD-TYPE	120	93	67

'ACSS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.32

Table S6462. Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ACSS2 MUTATED	3	3	3	0
ACSS2 WILD-TYPE	53	102	57	68

'ACSS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.64

Table S6463. Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ACSS2 MUTATED	0	1	1	2	0	2
ACSS2 WILD-TYPE	34	17	58	36	19	41

'ACSS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.49

Table S6464. Gene #657: 'ACSS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ACSS2 MUTATED	2	2	2
ACSS2 WILD-TYPE	120	49	36

'CD1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.78

Table S6465. Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CD1E MUTATED	3	2	1	1	0
CD1E WILD-TYPE	76	124	26	42	12

'CD1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 0.87

Table S6466. Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CD1E MUTATED	1	2	0	2
CD1E WILD-TYPE	70	74	34	61

'CD1E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 0.94

Table S6467. Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CD1E MUTATED	2	2	3
CD1E WILD-TYPE	76	84	82

'CD1E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.71

Table S6468. Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CD1E MUTATED	1	3	2	1
CD1E WILD-TYPE	32	75	49	86

'CD1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.41

Table S6469. Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CD1E MUTATED	1	1	0	1	4
CD1E WILD-TYPE	64	58	42	33	53

'CD1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S6470. Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CD1E MUTATED	0	0	2	0	1	3	1
CD1E WILD-TYPE	36	21	46	56	38	34	19

'CD1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.7

Table S6471. Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CD1E MUTATED	4	1	2
CD1E WILD-TYPE	122	95	65

'CD1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.56

Table S6472. Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CD1E MUTATED	2	1	1	3
CD1E WILD-TYPE	54	104	59	65

'CD1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.27

Table S6473. Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CD1E MUTATED	2	1	0	0	0	1
CD1E WILD-TYPE	32	17	59	38	19	42

'CD1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.59

Table S6474. Gene #658: 'CD1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CD1E MUTATED	2	2	0
CD1E WILD-TYPE	120	49	38

'SCN10A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.39

Table S6475. Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SCN10A MUTATED	4	16	4	4	0
SCN10A WILD-TYPE	75	110	23	39	12

'SCN10A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.61

Table S6476. Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SCN10A MUTATED	6	9	5	4
SCN10A WILD-TYPE	65	67	29	59

'SCN10A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.42

Table S6477. Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SCN10A MUTATED	11	6	7
SCN10A WILD-TYPE	67	80	78

'SCN10A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.46

Table S6478. Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SCN10A MUTATED	3	4	7	10
SCN10A WILD-TYPE	30	74	44	77

'SCN10A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S6479. Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SCN10A MUTATED	12	4	2	2	5
SCN10A WILD-TYPE	53	55	40	32	52

'SCN10A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.27

Table S6480. Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SCN10A MUTATED	6	1	2	4	4	3	5
SCN10A WILD-TYPE	30	20	46	52	35	34	15

'SCN10A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.23

Table S6481. Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SCN10A MUTATED	17	8	3
SCN10A WILD-TYPE	109	88	64

'SCN10A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.79

Table S6482. Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SCN10A MUTATED	5	13	4	6
SCN10A WILD-TYPE	51	92	56	62

'SCN10A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.66

Table S6483. Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SCN10A MUTATED	4	3	8	3	1	2
SCN10A WILD-TYPE	30	15	51	35	18	41

'SCN10A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S6484. Gene #659: 'SCN10A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SCN10A MUTATED	13	4	4
SCN10A WILD-TYPE	109	47	34

'CBLN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.24

Table S6485. Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CBLN3 MUTATED	0	3	2	0	0
CBLN3 WILD-TYPE	79	123	25	43	12

'CBLN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.5

Table S6486. Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CBLN3 MUTATED	1	3	0	0
CBLN3 WILD-TYPE	70	73	34	63

'CBLN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.28

Table S6487. Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CBLN3 MUTATED	1	0	3
CBLN3 WILD-TYPE	77	86	82

'CBLN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.37

Table S6488. Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CBLN3 MUTATED	0	2	2	0
CBLN3 WILD-TYPE	33	76	49	87

'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.28

Table S6489. Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CBLN3 MUTATED	2	0	2	0	0
CBLN3 WILD-TYPE	63	59	40	34	57

'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.54

Table S6490. Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CBLN3 MUTATED	0	0	0	2	1	0	1
CBLN3 WILD-TYPE	36	21	48	54	38	37	19

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.32

Table S6491. Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CBLN3 MUTATED	4	0	1
CBLN3 WILD-TYPE	122	96	66

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0815 (Fisher's exact test), Q value = 0.18

Table S6492. Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CBLN3 MUTATED	3	2	0	0
CBLN3 WILD-TYPE	53	103	60	68

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.66

Table S6493. Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CBLN3 MUTATED	2	0	1	1	0	0
CBLN3 WILD-TYPE	32	18	58	37	19	43

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.31

Table S6494. Gene #660: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CBLN3 MUTATED	2	0	2
CBLN3 WILD-TYPE	120	51	36

'DGKD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.69

Table S6495. Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DGKD MUTATED	1	4	1	0	0
DGKD WILD-TYPE	78	122	26	43	12

'DGKD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.53

Table S6496. Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DGKD MUTATED	1	3	1	0
DGKD WILD-TYPE	70	73	33	63

'DGKD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S6497. Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DGKD MUTATED	3	1	1
DGKD WILD-TYPE	75	85	84

'DGKD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.62

Table S6498. Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DGKD MUTATED	1	1	2	1
DGKD WILD-TYPE	32	77	49	86

'DGKD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.09

Table S6499. Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DGKD MUTATED	4	0	0	0	0
DGKD WILD-TYPE	61	59	42	34	57

Figure S2458. Get High-res Image Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DGKD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.25

Table S6500. Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DGKD MUTATED	1	0	0	0	2	0	1
DGKD WILD-TYPE	35	21	48	56	37	37	19

'DGKD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.75

Table S6501. Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DGKD MUTATED	3	1	2
DGKD WILD-TYPE	123	95	65

'DGKD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.074

Table S6502. Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DGKD MUTATED	4	0	1	1
DGKD WILD-TYPE	52	105	59	67

Figure S2459. Get High-res Image Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DGKD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.33

Table S6503. Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DGKD MUTATED	1	0	0	3	0	1
DGKD WILD-TYPE	33	18	59	35	19	42

'DGKD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.12

Table S6504. Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DGKD MUTATED	1	1	3
DGKD WILD-TYPE	121	50	35

Figure S2460. Get High-res Image Gene #661: 'DGKD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAGI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.49

Table S6505. Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAGI2 MUTATED	4	15	2	5	2
MAGI2 WILD-TYPE	75	111	25	38	10

'MAGI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S6506. Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAGI2 MUTATED	5	11	2	4
MAGI2 WILD-TYPE	66	65	32	59

'MAGI2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00329 (Fisher's exact test), Q value = 0.027

Table S6507. Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MAGI2 MUTATED	15	3	7
MAGI2 WILD-TYPE	63	83	78

Figure S2461. Get High-res Image Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MAGI2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.12

Table S6508. Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MAGI2 MUTATED	2	6	11	6
MAGI2 WILD-TYPE	31	72	40	81

Figure S2462. Get High-res Image Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAGI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.16

Table S6509. Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MAGI2 MUTATED	10	1	5	2	6
MAGI2 WILD-TYPE	55	58	37	32	51

'MAGI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.49

Table S6510. Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MAGI2 MUTATED	4	1	1	8	5	3	2
MAGI2 WILD-TYPE	32	20	47	48	34	34	18

'MAGI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00203 (Fisher's exact test), Q value = 0.02

Table S6511. Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MAGI2 MUTATED	21	3	4
MAGI2 WILD-TYPE	105	93	63

Figure S2463. Get High-res Image Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAGI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0388 (Fisher's exact test), Q value = 0.12

Table S6512. Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MAGI2 MUTATED	10	12	2	4
MAGI2 WILD-TYPE	46	93	58	64

Figure S2464. Get High-res Image Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAGI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S6513. Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MAGI2 MUTATED	5	2	4	5	0	1
MAGI2 WILD-TYPE	29	16	55	33	19	42

'MAGI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.28

Table S6514. Gene #662: 'MAGI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MAGI2 MUTATED	13	1	3
MAGI2 WILD-TYPE	109	50	35

'FIGNL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S6515. Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FIGNL1 MUTATED	0	6	2	1	0
FIGNL1 WILD-TYPE	79	120	25	42	12

'FIGNL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.19

Table S6516. Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FIGNL1 MUTATED	0	5	1	1
FIGNL1 WILD-TYPE	71	71	33	62

'FIGNL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00192 (Fisher's exact test), Q value = 0.02

Table S6517. Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FIGNL1 MUTATED	7	1	0
FIGNL1 WILD-TYPE	71	85	85

Figure S2465. Get High-res Image Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FIGNL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00447 (Fisher's exact test), Q value = 0.032

Table S6518. Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FIGNL1 MUTATED	2	0	5	1
FIGNL1 WILD-TYPE	31	78	46	86

Figure S2466. Get High-res Image Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.087

Table S6519. Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FIGNL1 MUTATED	6	1	0	1	0
FIGNL1 WILD-TYPE	59	58	42	33	57

Figure S2467. Get High-res Image Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.21

Table S6520. Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FIGNL1 MUTATED	1	0	1	1	2	0	3
FIGNL1 WILD-TYPE	35	21	47	55	37	37	17

'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S6521. Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FIGNL1 MUTATED	7	1	1
FIGNL1 WILD-TYPE	119	95	66

'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00558 (Fisher's exact test), Q value = 0.036

Table S6522. Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FIGNL1 MUTATED	6	2	1	0
FIGNL1 WILD-TYPE	50	103	59	68

Figure S2468. Get High-res Image Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.58

Table S6523. Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FIGNL1 MUTATED	0	1	2	3	0	1
FIGNL1 WILD-TYPE	34	17	57	35	19	42

'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0452 (Fisher's exact test), Q value = 0.13

Table S6524. Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FIGNL1 MUTATED	2	1	4
FIGNL1 WILD-TYPE	120	50	34

Figure S2469. Get High-res Image Gene #663: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STK36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S6525. Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
STK36 MUTATED	1	7	0	2	0
STK36 WILD-TYPE	78	119	27	41	12

'STK36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 0.92

Table S6526. Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
STK36 MUTATED	2	3	0	2
STK36 WILD-TYPE	69	73	34	61

'STK36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.77

Table S6527. Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
STK36 MUTATED	3	2	4
STK36 WILD-TYPE	75	84	81

'STK36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.45

Table S6528. Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
STK36 MUTATED	0	2	4	3
STK36 WILD-TYPE	33	76	47	84

'STK36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.35

Table S6529. Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
STK36 MUTATED	6	1	1	1	1
STK36 WILD-TYPE	59	58	41	33	56

'STK36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.36

Table S6530. Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
STK36 MUTATED	3	0	0	2	1	2	2
STK36 WILD-TYPE	33	21	48	54	38	35	18

'STK36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.46

Table S6531. Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
STK36 MUTATED	7	2	1
STK36 WILD-TYPE	119	94	66

'STK36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.32

Table S6532. Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
STK36 MUTATED	4	4	0	2
STK36 WILD-TYPE	52	101	60	66

'STK36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.61

Table S6533. Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
STK36 MUTATED	2	1	2	2	0	0
STK36 WILD-TYPE	32	17	57	36	19	43

'STK36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0646 (Fisher's exact test), Q value = 0.16

Table S6534. Gene #664: 'STK36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
STK36 MUTATED	7	0	0
STK36 WILD-TYPE	115	51	38

'USP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.4

Table S6535. Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
USP13 MUTATED	1	6	2	1	1
USP13 WILD-TYPE	78	120	25	42	11

'USP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.13

Table S6536. Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
USP13 MUTATED	2	1	3	0
USP13 WILD-TYPE	69	75	31	63

Figure S2470. Get High-res Image Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'USP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.11

Table S6537. Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
USP13 MUTATED	5	0	5
USP13 WILD-TYPE	73	86	80

Figure S2471. Get High-res Image Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'USP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.59

Table S6538. Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
USP13 MUTATED	1	3	4	2
USP13 WILD-TYPE	32	75	47	85

'USP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.15

Table S6539. Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
USP13 MUTATED	6	0	1	1	1
USP13 WILD-TYPE	59	59	41	33	56

'USP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00928 (Fisher's exact test), Q value = 0.05

Table S6540. Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
USP13 MUTATED	0	1	0	2	1	1	4
USP13 WILD-TYPE	36	20	48	54	38	36	16

Figure S2472. Get High-res Image Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'USP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S6541. Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
USP13 MUTATED	8	1	2
USP13 WILD-TYPE	118	95	65

'USP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S6542. Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
USP13 MUTATED	4	4	0	3
USP13 WILD-TYPE	52	101	60	65

'USP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.21

Table S6543. Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
USP13 MUTATED	1	0	1	4	0	0
USP13 WILD-TYPE	33	18	58	34	19	43

'USP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.27

Table S6544. Gene #665: 'USP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
USP13 MUTATED	6	0	0
USP13 WILD-TYPE	116	51	38

'CALCRL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 0.069

Table S6545. Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CALCRL MUTATED	0	3	2	1	2
CALCRL WILD-TYPE	79	123	25	42	10

Figure S2473. Get High-res Image Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CALCRL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.53

Table S6546. Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CALCRL MUTATED	1	3	1	0
CALCRL WILD-TYPE	70	73	33	63

'CALCRL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S6547. Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CALCRL MUTATED	4	2	2
CALCRL WILD-TYPE	74	84	83

'CALCRL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.33

Table S6548. Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CALCRL MUTATED	1	1	4	2
CALCRL WILD-TYPE	32	77	47	85

'CALCRL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.44

Table S6549. Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CALCRL MUTATED	4	1	1	1	0
CALCRL WILD-TYPE	61	58	41	33	57

'CALCRL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.52

Table S6550. Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CALCRL MUTATED	3	0	1	1	1	0	1
CALCRL WILD-TYPE	33	21	47	55	38	37	19

'CALCRL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.29

Table S6551. Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CALCRL MUTATED	6	2	0
CALCRL WILD-TYPE	120	94	67

'CALCRL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0873 (Fisher's exact test), Q value = 0.19

Table S6552. Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CALCRL MUTATED	4	2	2	0
CALCRL WILD-TYPE	52	103	58	68

'CALCRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 0.93

Table S6553. Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CALCRL MUTATED	0	0	2	1	0	2
CALCRL WILD-TYPE	34	18	57	37	19	41

'CALCRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6554. Gene #666: 'CALCRL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CALCRL MUTATED	3	1	1
CALCRL WILD-TYPE	119	50	37

'AFP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.64

Table S6555. Gene #667: 'AFP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AFP MUTATED	0	3	0	0	0
AFP WILD-TYPE	79	123	27	43	12

'AFP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.33

Table S6556. Gene #667: 'AFP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
AFP MUTATED	2	0	1
AFP WILD-TYPE	76	86	84

'AFP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6557. Gene #667: 'AFP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
AFP MUTATED	0	1	1	1
AFP WILD-TYPE	33	77	50	86

'AFP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.69

Table S6558. Gene #667: 'AFP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
AFP MUTATED	1	2	0
AFP WILD-TYPE	125	94	67

'AFP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 0.77

Table S6559. Gene #667: 'AFP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
AFP MUTATED	1	1	1	0
AFP WILD-TYPE	55	104	59	68

'DISP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.085

Table S6560. Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
DISP2 MUTATED	0	11	0	3	0
DISP2 WILD-TYPE	79	115	27	40	12

Figure S2474. Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DISP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.0068

Table S6561. Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
DISP2 MUTATED	1	11	2	0
DISP2 WILD-TYPE	70	65	32	63

Figure S2475. Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DISP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00113 (Fisher's exact test), Q value = 0.014

Table S6562. Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
DISP2 MUTATED	9	1	1
DISP2 WILD-TYPE	69	85	84

Figure S2476. Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DISP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.1

Table S6563. Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
DISP2 MUTATED	3	0	4	4
DISP2 WILD-TYPE	30	78	47	83

Figure S2477. Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DISP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00443 (Fisher's exact test), Q value = 0.032

Table S6564. Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
DISP2 MUTATED	9	1	2	1	0
DISP2 WILD-TYPE	56	58	40	33	57

Figure S2478. Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DISP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00824 (Fisher's exact test), Q value = 0.047

Table S6565. Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
DISP2 MUTATED	2	0	0	3	2	1	5
DISP2 WILD-TYPE	34	21	48	53	37	36	15

Figure S2479. Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DISP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0015 (Fisher's exact test), Q value = 0.017

Table S6566. Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
DISP2 MUTATED	13	2	0
DISP2 WILD-TYPE	113	94	67

Figure S2480. Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DISP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00217 (Fisher's exact test), Q value = 0.021

Table S6567. Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
DISP2 MUTATED	8	6	0	1
DISP2 WILD-TYPE	48	99	60	67

Figure S2481. Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DISP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S6568. Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
DISP2 MUTATED	2	1	5	5	0	0
DISP2 WILD-TYPE	32	17	54	33	19	43

'DISP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.079

Table S6569. Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
DISP2 MUTATED	8	0	5
DISP2 WILD-TYPE	114	51	33

Figure S2482. Get High-res Image Gene #668: 'DISP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0011 (Fisher's exact test), Q value = 0.014

Table S6570. Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MGA MUTATED	0	17	4	2	1
MGA WILD-TYPE	79	109	23	41	11

Figure S2483. Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0037

Table S6571. Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MGA MUTATED	0	12	6	2
MGA WILD-TYPE	71	64	28	61

Figure S2484. Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00183 (Fisher's exact test), Q value = 0.019

Table S6572. Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MGA MUTATED	15	3	5
MGA WILD-TYPE	63	83	80

Figure S2485. Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0057

Table S6573. Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MGA MUTATED	6	4	11	2
MGA WILD-TYPE	27	74	40	85

Figure S2486. Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S6574. Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MGA MUTATED	16	0	1	4	0
MGA WILD-TYPE	49	59	41	30	57

Figure S2487. Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0032

Table S6575. Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MGA MUTATED	4	3	0	3	4	0	7
MGA WILD-TYPE	32	18	48	53	35	37	13

Figure S2488. Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S6576. Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MGA MUTATED	22	2	1
MGA WILD-TYPE	104	94	66

Figure S2489. Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S6577. Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MGA MUTATED	14	10	1	0
MGA WILD-TYPE	42	95	59	68

Figure S2490. Get High-res Image Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.28

Table S6578. Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MGA MUTATED	2	2	9	3	0	1
MGA WILD-TYPE	32	16	50	35	19	42

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0563 (Fisher's exact test), Q value = 0.15

Table S6579. Gene #669: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MGA MUTATED	10	1	6
MGA WILD-TYPE	112	50	32

'PPP1R12C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.42

Table S6580. Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PPP1R12C MUTATED	0	5	0	0	0
PPP1R12C WILD-TYPE	79	121	27	43	12

'PPP1R12C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.062

Table S6581. Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PPP1R12C MUTATED	0	5	0	0
PPP1R12C WILD-TYPE	71	71	34	63

Figure S2491. Get High-res Image Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PPP1R12C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.33

Table S6582. Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PPP1R12C MUTATED	2	0	1
PPP1R12C WILD-TYPE	76	86	84

'PPP1R12C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.39

Table S6583. Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PPP1R12C MUTATED	0	0	2	1
PPP1R12C WILD-TYPE	33	78	49	86

'PPP1R12C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.14

Table S6584. Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PPP1R12C MUTATED	3	0	0	2	0
PPP1R12C WILD-TYPE	62	59	42	32	57

'PPP1R12C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0978 (Fisher's exact test), Q value = 0.2

Table S6585. Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PPP1R12C MUTATED	0	0	0	1	3	0	1
PPP1R12C WILD-TYPE	36	21	48	55	36	37	19

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.43

Table S6586. Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PPP1R12C MUTATED	4	1	0
PPP1R12C WILD-TYPE	122	95	67

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.4

Table S6587. Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PPP1R12C MUTATED	2	3	0	0
PPP1R12C WILD-TYPE	54	102	60	68

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.096

Table S6588. Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PPP1R12C MUTATED	1	2	0	2	0	0
PPP1R12C WILD-TYPE	33	16	59	36	19	43

Figure S2492. Get High-res Image Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.41

Table S6589. Gene #670: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PPP1R12C MUTATED	3	0	2
PPP1R12C WILD-TYPE	119	51	36

'UNC50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.21

Table S6590. Gene #671: 'UNC50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
UNC50 MUTATED	3	0	0	0	0
UNC50 WILD-TYPE	62	59	42	34	57

'UNC50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.16

Table S6591. Gene #671: 'UNC50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
UNC50 MUTATED	0	0	0	0	2	0	1
UNC50 WILD-TYPE	36	21	48	56	37	37	19

'UNC50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.45

Table S6592. Gene #671: 'UNC50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
UNC50 MUTATED	3	0	0
UNC50 WILD-TYPE	123	96	67

'UNC50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00698 (Fisher's exact test), Q value = 0.041

Table S6593. Gene #671: 'UNC50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
UNC50 MUTATED	3	0	0	0
UNC50 WILD-TYPE	53	105	60	68

Figure S2493. Get High-res Image Gene #671: 'UNC50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CNGA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.58

Table S6594. Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CNGA4 MUTATED	4	12	1	1	0
CNGA4 WILD-TYPE	75	114	26	42	12

'CNGA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.46

Table S6595. Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CNGA4 MUTATED	2	7	3	3
CNGA4 WILD-TYPE	69	69	31	60

'CNGA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S6596. Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CNGA4 MUTATED	9	4	3
CNGA4 WILD-TYPE	69	82	82

'CNGA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0978 (Fisher's exact test), Q value = 0.2

Table S6597. Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CNGA4 MUTATED	2	2	7	5
CNGA4 WILD-TYPE	31	76	44	82

'CNGA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.07

Table S6598. Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CNGA4 MUTATED	9	1	1	0	3
CNGA4 WILD-TYPE	56	58	41	34	54

Figure S2494. Get High-res Image Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CNGA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0067 (Fisher's exact test), Q value = 0.04

Table S6599. Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CNGA4 MUTATED	4	0	1	0	2	3	4
CNGA4 WILD-TYPE	32	21	47	56	37	34	16

Figure S2495. Get High-res Image Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CNGA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.33

Table S6600. Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CNGA4 MUTATED	11	3	4
CNGA4 WILD-TYPE	115	93	63

'CNGA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0716 (Fisher's exact test), Q value = 0.17

Table S6601. Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CNGA4 MUTATED	8	4	2	4
CNGA4 WILD-TYPE	48	101	58	64

'CNGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.24

Table S6602. Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CNGA4 MUTATED	3	2	5	2	3	0
CNGA4 WILD-TYPE	31	16	54	36	16	43

'CNGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.57

Table S6603. Gene #672: 'CNGA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CNGA4 MUTATED	9	2	4
CNGA4 WILD-TYPE	113	49	34

'C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.091

Table S6604. Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C3 MUTATED	2	18	3	2	0
C3 WILD-TYPE	77	108	24	41	12

Figure S2496. Get High-res Image Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.15

Table S6605. Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C3 MUTATED	5	10	6	2
C3 WILD-TYPE	66	66	28	61

'C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00421 (Fisher's exact test), Q value = 0.031

Table S6606. Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C3 MUTATED	15	4	5
C3 WILD-TYPE	63	82	80

Figure S2497. Get High-res Image Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.25

Table S6607. Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C3 MUTATED	5	4	8	7
C3 WILD-TYPE	28	74	43	80

'C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.17

Table S6608. Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C3 MUTATED	10	3	1	3	2
C3 WILD-TYPE	55	56	41	31	55

'C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.31

Table S6609. Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C3 MUTATED	5	1	2	3	3	1	4
C3 WILD-TYPE	31	20	46	53	36	36	16

'C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S6610. Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C3 MUTATED	15	8	2
C3 WILD-TYPE	111	88	65

'C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.27

Table S6611. Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C3 MUTATED	9	8	5	3
C3 WILD-TYPE	47	97	55	65

'C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.13

Table S6612. Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C3 MUTATED	1	2	12	2	0	5
C3 WILD-TYPE	33	16	47	36	19	38

Figure S2498. Get High-res Image Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.41

Table S6613. Gene #673: 'C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C3 MUTATED	13	3	6
C3 WILD-TYPE	109	48	32

'GPX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 0.94

Table S6614. Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPX6 MUTATED	1	3	0	0	0
GPX6 WILD-TYPE	78	123	27	43	12

'GPX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.71

Table S6615. Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPX6 MUTATED	1	2	1	0
GPX6 WILD-TYPE	70	74	33	63

'GPX6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6616. Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GPX6 MUTATED	1	1	1
GPX6 WILD-TYPE	77	85	84

'GPX6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.43

Table S6617. Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GPX6 MUTATED	1	0	0	2
GPX6 WILD-TYPE	32	78	51	85

'GPX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.47

Table S6618. Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GPX6 MUTATED	2	0	1	0	0
GPX6 WILD-TYPE	63	59	41	34	57

'GPX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.54

Table S6619. Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GPX6 MUTATED	1	0	0	1	0	0	1
GPX6 WILD-TYPE	35	21	48	55	39	37	19

'GPX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.34

Table S6620. Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GPX6 MUTATED	2	0	2
GPX6 WILD-TYPE	124	96	65

'GPX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 0.82

Table S6621. Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GPX6 MUTATED	1	2	1	0
GPX6 WILD-TYPE	55	103	59	68

'GPX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.66

Table S6622. Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GPX6 MUTATED	0	0	1	1	1	0
GPX6 WILD-TYPE	34	18	58	37	18	43

'GPX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 0.82

Table S6623. Gene #674: 'GPX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GPX6 MUTATED	3	0	0
GPX6 WILD-TYPE	119	51	38

'KANK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.25

Table S6624. Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KANK4 MUTATED	0	8	1	1	0
KANK4 WILD-TYPE	79	118	26	42	12

'KANK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0454 (Fisher's exact test), Q value = 0.13

Table S6625. Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KANK4 MUTATED	2	6	0	0
KANK4 WILD-TYPE	69	70	34	63

Figure S2499. Get High-res Image Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KANK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00968 (Fisher's exact test), Q value = 0.05

Table S6626. Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KANK4 MUTATED	6	0	2
KANK4 WILD-TYPE	72	86	83

Figure S2500. Get High-res Image Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KANK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0547 (Fisher's exact test), Q value = 0.14

Table S6627. Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KANK4 MUTATED	0	1	5	2
KANK4 WILD-TYPE	33	77	46	85

'KANK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.28

Table S6628. Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KANK4 MUTATED	5	0	2	1	1
KANK4 WILD-TYPE	60	59	40	33	56

'KANK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.064

Table S6629. Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KANK4 MUTATED	0	0	0	4	2	0	3
KANK4 WILD-TYPE	36	21	48	52	37	37	17

Figure S2501. Get High-res Image Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KANK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.15

Table S6630. Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KANK4 MUTATED	8	2	0
KANK4 WILD-TYPE	118	94	67

'KANK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.063

Table S6631. Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KANK4 MUTATED	6	3	0	1
KANK4 WILD-TYPE	50	102	60	67

Figure S2502. Get High-res Image Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 0.82

Table S6632. Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KANK4 MUTATED	1	1	2	3	0	1
KANK4 WILD-TYPE	33	17	57	35	19	42

'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S6633. Gene #675: 'KANK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KANK4 MUTATED	5	0	3
KANK4 WILD-TYPE	117	51	35

'CASP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 0.86

Table S6634. Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CASP1 MUTATED	2	2	0	0	0
CASP1 WILD-TYPE	77	124	27	43	12

'CASP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.71

Table S6635. Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CASP1 MUTATED	1	2	1	0
CASP1 WILD-TYPE	70	74	33	63

'CASP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.18

Table S6636. Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CASP1 MUTATED	3	0	1
CASP1 WILD-TYPE	75	86	84

'CASP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.7

Table S6637. Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CASP1 MUTATED	0	1	2	1
CASP1 WILD-TYPE	33	77	49	86

'CASP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.65

Table S6638. Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CASP1 MUTATED	2	0	0	1	1
CASP1 WILD-TYPE	63	59	42	33	56

'CASP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 0.97

Table S6639. Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CASP1 MUTATED	1	0	0	1	1	1	0
CASP1 WILD-TYPE	35	21	48	55	38	36	20

'CASP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.47

Table S6640. Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CASP1 MUTATED	3	0	1
CASP1 WILD-TYPE	123	96	66

'CASP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.54

Table S6641. Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CASP1 MUTATED	2	1	0	1
CASP1 WILD-TYPE	54	104	60	67

'CASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.58

Table S6642. Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CASP1 MUTATED	1	0	3	0	0	0
CASP1 WILD-TYPE	33	18	56	38	19	43

'CASP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.71

Table S6643. Gene #676: 'CASP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CASP1 MUTATED	3	0	1
CASP1 WILD-TYPE	119	51	37

'ELL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.24

Table S6644. Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ELL2 MUTATED	2	10	0	0	0
ELL2 WILD-TYPE	77	116	27	43	12

'ELL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.27

Table S6645. Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ELL2 MUTATED	1	6	0	2
ELL2 WILD-TYPE	70	70	34	61

'ELL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.012

Table S6646. Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ELL2 MUTATED	9	0	3
ELL2 WILD-TYPE	69	86	82

Figure S2503. Get High-res Image Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ELL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00853 (Fisher's exact test), Q value = 0.047

Table S6647. Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ELL2 MUTATED	3	4	5	0
ELL2 WILD-TYPE	30	74	46	87

Figure S2504. Get High-res Image Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ELL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.059 (Fisher's exact test), Q value = 0.15

Table S6648. Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ELL2 MUTATED	5	1	4	1	0
ELL2 WILD-TYPE	60	58	38	33	57

'ELL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.091

Table S6649. Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ELL2 MUTATED	3	1	0	5	0	0	2
ELL2 WILD-TYPE	33	20	48	51	39	37	18

Figure S2505. Get High-res Image Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ELL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.16

Table S6650. Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ELL2 MUTATED	9	1	2
ELL2 WILD-TYPE	117	95	65

'ELL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.42

Table S6651. Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ELL2 MUTATED	3	7	1	1
ELL2 WILD-TYPE	53	98	59	67

'ELL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.87

Table S6652. Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ELL2 MUTATED	2	0	4	2	0	1
ELL2 WILD-TYPE	32	18	55	36	19	42

'ELL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.56

Table S6653. Gene #677: 'ELL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ELL2 MUTATED	5	1	3
ELL2 WILD-TYPE	117	50	35

'PIK3C2G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S6654. Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PIK3C2G MUTATED	0	7	2	1	0
PIK3C2G WILD-TYPE	79	119	25	42	12

'PIK3C2G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.15

Table S6655. Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PIK3C2G MUTATED	0	5	2	1
PIK3C2G WILD-TYPE	71	71	32	62

'PIK3C2G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.51

Table S6656. Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PIK3C2G MUTATED	5	2	2
PIK3C2G WILD-TYPE	73	84	83

'PIK3C2G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.38

Table S6657. Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PIK3C2G MUTATED	1	1	4	3
PIK3C2G WILD-TYPE	32	77	47	84

'PIK3C2G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.16

Table S6658. Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PIK3C2G MUTATED	6	1	1	1	0
PIK3C2G WILD-TYPE	59	58	41	33	57

'PIK3C2G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0825 (Fisher's exact test), Q value = 0.18

Table S6659. Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PIK3C2G MUTATED	3	1	0	1	2	0	2
PIK3C2G WILD-TYPE	33	20	48	55	37	37	18

'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.15

Table S6660. Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PIK3C2G MUTATED	8	2	0
PIK3C2G WILD-TYPE	118	94	67

'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.23

Table S6661. Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PIK3C2G MUTATED	3	6	1	0
PIK3C2G WILD-TYPE	53	99	59	68

'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.53

Table S6662. Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PIK3C2G MUTATED	1	1	3	3	0	0
PIK3C2G WILD-TYPE	33	17	56	35	19	43

'PIK3C2G MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S6663. Gene #678: 'PIK3C2G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PIK3C2G MUTATED	7	0	1
PIK3C2G WILD-TYPE	115	51	37

'KIAA0664 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 0.17

Table S6664. Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA0664 MUTATED	1	7	4	1	0
KIAA0664 WILD-TYPE	78	119	23	42	12

'KIAA0664 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0829 (Fisher's exact test), Q value = 0.18

Table S6665. Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA0664 MUTATED	1	6	3	1
KIAA0664 WILD-TYPE	70	70	31	62

'KIAA0664 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.26

Table S6666. Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA0664 MUTATED	7	2	3
KIAA0664 WILD-TYPE	71	84	82

'KIAA0664 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.078

Table S6667. Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA0664 MUTATED	0	2	7	3
KIAA0664 WILD-TYPE	33	76	44	84

Figure S2506. Get High-res Image Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0664 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.35

Table S6668. Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA0664 MUTATED	6	1	1	1	1
KIAA0664 WILD-TYPE	59	58	41	33	56

'KIAA0664 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.22

Table S6669. Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA0664 MUTATED	4	0	0	2	1	1	2
KIAA0664 WILD-TYPE	32	21	48	54	38	36	18

'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00811 (Fisher's exact test), Q value = 0.046

Table S6670. Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA0664 MUTATED	11	2	0
KIAA0664 WILD-TYPE	115	94	67

Figure S2507. Get High-res Image Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0797 (Fisher's exact test), Q value = 0.18

Table S6671. Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA0664 MUTATED	3	8	2	0
KIAA0664 WILD-TYPE	53	97	58	68

'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.38

Table S6672. Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA0664 MUTATED	1	1	7	1	0	1
KIAA0664 WILD-TYPE	33	17	52	37	19	42

'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6673. Gene #679: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA0664 MUTATED	7	2	2
KIAA0664 WILD-TYPE	115	49	36

'SOS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.07

Table S6674. Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SOS2 MUTATED	3	15	0	0	1
SOS2 WILD-TYPE	76	111	27	43	11

Figure S2508. Get High-res Image Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SOS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.15

Table S6675. Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SOS2 MUTATED	2	10	2	2
SOS2 WILD-TYPE	69	66	32	61

'SOS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 0.94

Table S6676. Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SOS2 MUTATED	6	5	6
SOS2 WILD-TYPE	72	81	79

'SOS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.43

Table S6677. Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SOS2 MUTATED	3	3	6	5
SOS2 WILD-TYPE	30	75	45	82

'SOS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00733 (Fisher's exact test), Q value = 0.043

Table S6678. Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SOS2 MUTATED	11	2	1	2	1
SOS2 WILD-TYPE	54	57	41	32	56

Figure S2509. Get High-res Image Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SOS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00337 (Fisher's exact test), Q value = 0.027

Table S6679. Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SOS2 MUTATED	1	0	1	6	2	1	6
SOS2 WILD-TYPE	35	21	47	50	37	36	14

Figure S2510. Get High-res Image Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SOS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.82

Table S6680. Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SOS2 MUTATED	10	5	4
SOS2 WILD-TYPE	116	91	63

'SOS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0317 (Fisher's exact test), Q value = 0.1

Table S6681. Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SOS2 MUTATED	9	5	3	2
SOS2 WILD-TYPE	47	100	57	66

Figure S2511. Get High-res Image Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SOS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S6682. Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SOS2 MUTATED	1	0	4	6	0	1
SOS2 WILD-TYPE	33	18	55	32	19	42

'SOS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.5

Table S6683. Gene #680: 'SOS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SOS2 MUTATED	6	2	4
SOS2 WILD-TYPE	116	49	34

'ATL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00607 (Fisher's exact test), Q value = 0.038

Table S6684. Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ATL3 MUTATED	0	11	0	0	1
ATL3 WILD-TYPE	79	115	27	43	11

Figure S2512. Get High-res Image Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.11

Table S6685. Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ATL3 MUTATED	0	6	1	1
ATL3 WILD-TYPE	71	70	33	62

Figure S2513. Get High-res Image Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.32

Table S6686. Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ATL3 MUTATED	5	1	4
ATL3 WILD-TYPE	73	85	81

'ATL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00716 (Fisher's exact test), Q value = 0.042

Table S6687. Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ATL3 MUTATED	2	1	6	1
ATL3 WILD-TYPE	31	77	45	86

Figure S2514. Get High-res Image Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.25

Table S6688. Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ATL3 MUTATED	5	1	2	2	0
ATL3 WILD-TYPE	60	58	40	32	57

'ATL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.23

Table S6689. Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ATL3 MUTATED	3	0	0	3	2	0	2
ATL3 WILD-TYPE	33	21	48	53	37	37	18

'ATL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00232 (Fisher's exact test), Q value = 0.022

Table S6690. Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ATL3 MUTATED	11	1	0
ATL3 WILD-TYPE	115	95	67

Figure S2515. Get High-res Image Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00453 (Fisher's exact test), Q value = 0.032

Table S6691. Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ATL3 MUTATED	7	4	1	0
ATL3 WILD-TYPE	49	101	59	68

Figure S2516. Get High-res Image Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.57

Table S6692. Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ATL3 MUTATED	1	0	4	2	0	0
ATL3 WILD-TYPE	33	18	55	36	19	43

'ATL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S6693. Gene #681: 'ATL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ATL3 MUTATED	3	1	3
ATL3 WILD-TYPE	119	50	35

'PEG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.3

Table S6694. Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PEG3 MUTATED	7	19	1	2	2
PEG3 WILD-TYPE	72	107	26	41	10

'PEG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00144 (Fisher's exact test), Q value = 0.016

Table S6695. Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PEG3 MUTATED	4	17	4	2
PEG3 WILD-TYPE	67	59	30	61

Figure S2517. Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PEG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.078

Table S6696. Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PEG3 MUTATED	13	4	5
PEG3 WILD-TYPE	65	82	80

Figure S2518. Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PEG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.0041

Table S6697. Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PEG3 MUTATED	1	2	13	6
PEG3 WILD-TYPE	32	76	38	81

Figure S2519. Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PEG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00603 (Fisher's exact test), Q value = 0.038

Table S6698. Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PEG3 MUTATED	16	2	4	3	5
PEG3 WILD-TYPE	49	57	38	31	52

Figure S2520. Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PEG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00503 (Fisher's exact test), Q value = 0.034

Table S6699. Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PEG3 MUTATED	6	1	2	6	7	1	7
PEG3 WILD-TYPE	30	20	46	50	32	36	13

Figure S2521. Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PEG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.071

Table S6700. Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PEG3 MUTATED	21	5	5
PEG3 WILD-TYPE	105	91	62

Figure S2522. Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PEG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00262 (Fisher's exact test), Q value = 0.024

Table S6701. Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PEG3 MUTATED	14	9	2	6
PEG3 WILD-TYPE	42	96	58	62

Figure S2523. Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PEG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S6702. Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PEG3 MUTATED	4	2	8	8	1	1
PEG3 WILD-TYPE	30	16	51	30	18	42

'PEG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00223 (Fisher's exact test), Q value = 0.021

Table S6703. Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PEG3 MUTATED	17	0	7
PEG3 WILD-TYPE	105	51	31

Figure S2524. Get High-res Image Gene #682: 'PEG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SMARCAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.59

Table S6704. Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SMARCAL1 MUTATED	2	8	0	3	0
SMARCAL1 WILD-TYPE	77	118	27	40	12

'SMARCAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00681 (Fisher's exact test), Q value = 0.041

Table S6705. Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SMARCAL1 MUTATED	2	8	0	0
SMARCAL1 WILD-TYPE	69	68	34	63

Figure S2525. Get High-res Image Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMARCAL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.54

Table S6706. Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SMARCAL1 MUTATED	5	3	2
SMARCAL1 WILD-TYPE	73	83	83

'SMARCAL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.25

Table S6707. Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SMARCAL1 MUTATED	0	2	5	3
SMARCAL1 WILD-TYPE	33	76	46	84

'SMARCAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 0.96

Table S6708. Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SMARCAL1 MUTATED	3	1	2	1	2
SMARCAL1 WILD-TYPE	62	58	40	33	55

'SMARCAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.088

Table S6709. Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SMARCAL1 MUTATED	2	0	0	5	0	0	2
SMARCAL1 WILD-TYPE	34	21	48	51	39	37	18

Figure S2526. Get High-res Image Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMARCAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.43

Table S6710. Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SMARCAL1 MUTATED	8	2	3
SMARCAL1 WILD-TYPE	118	94	64

'SMARCAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.074

Table S6711. Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SMARCAL1 MUTATED	7	2	1	3
SMARCAL1 WILD-TYPE	49	103	59	65

Figure S2527. Get High-res Image Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SMARCAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S6712. Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SMARCAL1 MUTATED	2	1	3	2	1	1
SMARCAL1 WILD-TYPE	32	17	56	36	18	42

'SMARCAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S6713. Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SMARCAL1 MUTATED	3	2	5
SMARCAL1 WILD-TYPE	119	49	33

Figure S2528. Get High-res Image Gene #683: 'SMARCAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'THBS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.21

Table S6714. Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
THBS1 MUTATED	1	11	0	3	0
THBS1 WILD-TYPE	78	115	27	40	12

'THBS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.09

Table S6715. Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
THBS1 MUTATED	1	8	3	1
THBS1 WILD-TYPE	70	68	31	62

Figure S2529. Get High-res Image Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'THBS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S6716. Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
THBS1 MUTATED	6	2	3
THBS1 WILD-TYPE	72	84	82

'THBS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.25

Table S6717. Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
THBS1 MUTATED	2	2	5	2
THBS1 WILD-TYPE	31	76	46	85

'THBS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.073

Table S6718. Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
THBS1 MUTATED	9	1	0	2	3
THBS1 WILD-TYPE	56	58	42	32	54

Figure S2530. Get High-res Image Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'THBS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00279 (Fisher's exact test), Q value = 0.025

Table S6719. Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
THBS1 MUTATED	4	1	0	3	2	0	5
THBS1 WILD-TYPE	32	20	48	53	37	37	15

Figure S2531. Get High-res Image Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'THBS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.055

Table S6720. Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
THBS1 MUTATED	12	1	2
THBS1 WILD-TYPE	114	95	65

Figure S2532. Get High-res Image Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'THBS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.11

Table S6721. Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
THBS1 MUTATED	6	7	0	2
THBS1 WILD-TYPE	50	98	60	66

Figure S2533. Get High-res Image Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'THBS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.37

Table S6722. Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
THBS1 MUTATED	1	1	5	4	1	0
THBS1 WILD-TYPE	33	17	54	34	18	43

'THBS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.066

Table S6723. Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
THBS1 MUTATED	5	1	6
THBS1 WILD-TYPE	117	50	32

Figure S2534. Get High-res Image Gene #684: 'THBS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PUS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 0.12

Table S6724. Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PUS7 MUTATED	0	9	1	0	0
PUS7 WILD-TYPE	79	117	26	43	12

Figure S2535. Get High-res Image Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PUS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.28

Table S6725. Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PUS7 MUTATED	0	4	2	2
PUS7 WILD-TYPE	71	72	32	61

'PUS7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 0.2

Table S6726. Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PUS7 MUTATED	6	1	2
PUS7 WILD-TYPE	72	85	83

'PUS7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.075

Table S6727. Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PUS7 MUTATED	1	3	5	0
PUS7 WILD-TYPE	32	75	46	87

Figure S2536. Get High-res Image Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PUS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00804 (Fisher's exact test), Q value = 0.046

Table S6728. Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PUS7 MUTATED	4	0	0	3	0
PUS7 WILD-TYPE	61	59	42	31	57

Figure S2537. Get High-res Image Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PUS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.094

Table S6729. Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PUS7 MUTATED	1	0	0	1	2	0	3
PUS7 WILD-TYPE	35	21	48	55	37	37	17

Figure S2538. Get High-res Image Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PUS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.057

Table S6730. Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PUS7 MUTATED	9	1	0
PUS7 WILD-TYPE	117	95	67

Figure S2539. Get High-res Image Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PUS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0895 (Fisher's exact test), Q value = 0.19

Table S6731. Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PUS7 MUTATED	4	5	1	0
PUS7 WILD-TYPE	52	100	59	68

'PUS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.68

Table S6732. Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PUS7 MUTATED	2	1	2	0	0	1
PUS7 WILD-TYPE	32	17	57	38	19	42

'PUS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.71

Table S6733. Gene #685: 'PUS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PUS7 MUTATED	3	1	2
PUS7 WILD-TYPE	119	50	36

'RALGDS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.071

Table S6734. Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RALGDS MUTATED	0	9	1	1	2
RALGDS WILD-TYPE	79	117	26	42	10

Figure S2540. Get High-res Image Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RALGDS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.12

Table S6735. Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RALGDS MUTATED	0	7	1	3
RALGDS WILD-TYPE	71	69	33	60

Figure S2541. Get High-res Image Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RALGDS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.49

Table S6736. Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RALGDS MUTATED	5	2	5
RALGDS WILD-TYPE	73	84	80

'RALGDS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.23

Table S6737. Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RALGDS MUTATED	3	5	3	1
RALGDS WILD-TYPE	30	73	48	86

'RALGDS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0677 (Fisher's exact test), Q value = 0.16

Table S6738. Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RALGDS MUTATED	7	2	2	1	0
RALGDS WILD-TYPE	58	57	40	33	57

'RALGDS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.12

Table S6739. Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RALGDS MUTATED	3	0	0	4	2	0	3
RALGDS WILD-TYPE	33	21	48	52	37	37	17

Figure S2542. Get High-res Image Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RALGDS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.065

Table S6740. Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RALGDS MUTATED	11	1	1
RALGDS WILD-TYPE	115	95	66

Figure S2543. Get High-res Image Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RALGDS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00576 (Fisher's exact test), Q value = 0.037

Table S6741. Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RALGDS MUTATED	7	5	1	0
RALGDS WILD-TYPE	49	100	59	68

Figure S2544. Get High-res Image Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RALGDS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 0.85

Table S6742. Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RALGDS MUTATED	2	0	4	1	0	1
RALGDS WILD-TYPE	32	18	55	37	19	42

'RALGDS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.49

Table S6743. Gene #686: 'RALGDS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RALGDS MUTATED	4	1	3
RALGDS WILD-TYPE	118	50	35

'CNTROB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.52

Table S6744. Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CNTROB MUTATED	0	5	0	1	0
CNTROB WILD-TYPE	79	121	27	42	12

'CNTROB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.15

Table S6745. Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CNTROB MUTATED	0	4	1	0
CNTROB WILD-TYPE	71	72	33	63

'CNTROB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.092

Table S6746. Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CNTROB MUTATED	4	0	1
CNTROB WILD-TYPE	74	86	84

Figure S2545. Get High-res Image Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CNTROB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0818 (Fisher's exact test), Q value = 0.18

Table S6747. Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CNTROB MUTATED	1	0	3	1
CNTROB WILD-TYPE	32	78	48	86

'CNTROB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.089

Table S6748. Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CNTROB MUTATED	4	0	0	2	0
CNTROB WILD-TYPE	61	59	42	32	57

Figure S2546. Get High-res Image Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CNTROB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.29

Table S6749. Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CNTROB MUTATED	2	0	0	1	3	0	0
CNTROB WILD-TYPE	34	21	48	55	36	37	20

'CNTROB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.077

Table S6750. Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CNTROB MUTATED	6	0	0
CNTROB WILD-TYPE	120	96	67

Figure S2547. Get High-res Image Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CNTROB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0027

Table S6751. Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CNTROB MUTATED	6	0	0	0
CNTROB WILD-TYPE	50	105	60	68

Figure S2548. Get High-res Image Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CNTROB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.81

Table S6752. Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CNTROB MUTATED	1	0	2	1	1	0
CNTROB WILD-TYPE	33	18	57	37	18	43

'CNTROB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.41

Table S6753. Gene #687: 'CNTROB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CNTROB MUTATED	3	0	2
CNTROB WILD-TYPE	119	51	36

'PFAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.28

Table S6754. Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PFAS MUTATED	1	7	0	0	1
PFAS WILD-TYPE	78	119	27	43	11

'PFAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.45

Table S6755. Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PFAS MUTATED	1	5	1	1
PFAS WILD-TYPE	70	71	33	62

'PFAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0424 (Fisher's exact test), Q value = 0.12

Table S6756. Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PFAS MUTATED	5	0	3
PFAS WILD-TYPE	73	86	82

Figure S2549. Get High-res Image Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PFAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.52

Table S6757. Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PFAS MUTATED	1	3	3	1
PFAS WILD-TYPE	32	75	48	86

'PFAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S6758. Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PFAS MUTATED	5	1	0	0	1
PFAS WILD-TYPE	60	58	42	34	56

'PFAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0718 (Fisher's exact test), Q value = 0.17

Table S6759. Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PFAS MUTATED	2	0	0	3	0	0	2
PFAS WILD-TYPE	34	21	48	53	39	37	18

'PFAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.6

Table S6760. Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PFAS MUTATED	6	2	1
PFAS WILD-TYPE	120	94	66

'PFAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.18

Table S6761. Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PFAS MUTATED	5	2	1	1
PFAS WILD-TYPE	51	103	59	67

'PFAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S6762. Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PFAS MUTATED	1	0	3	2	0	2
PFAS WILD-TYPE	33	18	56	36	19	41

'PFAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.77

Table S6763. Gene #688: 'PFAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PFAS MUTATED	5	1	2
PFAS WILD-TYPE	117	50	36

'TCF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.12

Table S6764. Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TCF7 MUTATED	0	6	2	0	1
TCF7 WILD-TYPE	79	120	25	43	11

Figure S2550. Get High-res Image Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TCF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.73

Table S6765. Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TCF7 MUTATED	1	4	1	2
TCF7 WILD-TYPE	70	72	33	61

'TCF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.11

Table S6766. Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TCF7 MUTATED	6	1	1
TCF7 WILD-TYPE	72	85	84

Figure S2551. Get High-res Image Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TCF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0191 (Fisher's exact test), Q value = 0.075

Table S6767. Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TCF7 MUTATED	3	2	3	0
TCF7 WILD-TYPE	30	76	48	87

Figure S2552. Get High-res Image Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TCF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 0.12

Table S6768. Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TCF7 MUTATED	5	0	1	1	0
TCF7 WILD-TYPE	60	59	41	33	57

Figure S2553. Get High-res Image Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TCF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.13

Table S6769. Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TCF7 MUTATED	1	0	0	2	1	0	3
TCF7 WILD-TYPE	35	21	48	54	38	37	17

Figure S2554. Get High-res Image Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TCF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.26

Table S6770. Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TCF7 MUTATED	7	1	1
TCF7 WILD-TYPE	119	95	66

'TCF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.5

Table S6771. Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TCF7 MUTATED	4	3	1	1
TCF7 WILD-TYPE	52	102	59	67

'TCF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 0.98

Table S6772. Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TCF7 MUTATED	1	0	3	2	0	1
TCF7 WILD-TYPE	33	18	56	36	19	42

'TCF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 0.81

Table S6773. Gene #689: 'TCF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TCF7 MUTATED	4	1	2
TCF7 WILD-TYPE	118	50	36

'GPATCH8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00184 (Fisher's exact test), Q value = 0.019

Table S6774. Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
GPATCH8 MUTATED	2	19	1	0	1
GPATCH8 WILD-TYPE	77	107	26	43	11

Figure S2555. Get High-res Image Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPATCH8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.36

Table S6775. Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
GPATCH8 MUTATED	3	8	5	4
GPATCH8 WILD-TYPE	68	68	29	59

'GPATCH8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.078

Table S6776. Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
GPATCH8 MUTATED	12	3	5
GPATCH8 WILD-TYPE	66	83	80

Figure S2556. Get High-res Image Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPATCH8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.075

Table S6777. Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
GPATCH8 MUTATED	5	4	8	3
GPATCH8 WILD-TYPE	28	74	43	84

Figure S2557. Get High-res Image Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPATCH8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00484 (Fisher's exact test), Q value = 0.033

Table S6778. Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
GPATCH8 MUTATED	9	1	4	3	0
GPATCH8 WILD-TYPE	56	58	38	31	57

Figure S2558. Get High-res Image Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPATCH8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00804 (Fisher's exact test), Q value = 0.046

Table S6779. Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
GPATCH8 MUTATED	5	0	0	6	3	0	3
GPATCH8 WILD-TYPE	31	21	48	50	36	37	17

Figure S2559. Get High-res Image Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.053

Table S6780. Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
GPATCH8 MUTATED	17	3	3
GPATCH8 WILD-TYPE	109	93	64

Figure S2560. Get High-res Image Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00936 (Fisher's exact test), Q value = 0.05

Table S6781. Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
GPATCH8 MUTATED	11	7	2	3
GPATCH8 WILD-TYPE	45	98	58	65

Figure S2561. Get High-res Image Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.27

Table S6782. Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
GPATCH8 MUTATED	3	2	9	1	1	1
GPATCH8 WILD-TYPE	31	16	50	37	18	42

'GPATCH8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.12

Table S6783. Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
GPATCH8 MUTATED	8	2	7
GPATCH8 WILD-TYPE	114	49	31

Figure S2562. Get High-res Image Gene #690: 'GPATCH8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PSD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 0.19

Table S6784. Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PSD MUTATED	1	10	1	2	2
PSD WILD-TYPE	78	116	26	41	10

'PSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.0066

Table S6785. Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PSD MUTATED	0	9	5	1
PSD WILD-TYPE	71	67	29	62

Figure S2563. Get High-res Image Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PSD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.15

Table S6786. Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PSD MUTATED	7	1	4
PSD WILD-TYPE	71	85	81

'PSD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.35

Table S6787. Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PSD MUTATED	0	4	5	3
PSD WILD-TYPE	33	74	46	84

'PSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.17

Table S6788. Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PSD MUTATED	8	1	3	2	1
PSD WILD-TYPE	57	58	39	32	56

'PSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.065

Table S6789. Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PSD MUTATED	1	3	0	4	5	0	2
PSD WILD-TYPE	35	18	48	52	34	37	18

Figure S2564. Get High-res Image Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00815 (Fisher's exact test), Q value = 0.046

Table S6790. Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PSD MUTATED	13	2	1
PSD WILD-TYPE	113	94	66

Figure S2565. Get High-res Image Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00586 (Fisher's exact test), Q value = 0.037

Table S6791. Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PSD MUTATED	6	9	1	0
PSD WILD-TYPE	50	96	59	68

Figure S2566. Get High-res Image Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.34

Table S6792. Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PSD MUTATED	1	1	4	4	0	0
PSD WILD-TYPE	33	17	55	34	19	43

'PSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.74

Table S6793. Gene #691: 'PSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PSD MUTATED	7	1	2
PSD WILD-TYPE	115	50	36

'MMEL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.23

Table S6794. Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MMEL1 MUTATED	0	4	1	0	1
MMEL1 WILD-TYPE	79	122	26	43	11

'MMEL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.26

Table S6795. Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MMEL1 MUTATED	0	3	0	0
MMEL1 WILD-TYPE	71	73	34	63

'MMEL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.56

Table S6796. Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MMEL1 MUTATED	3	1	2
MMEL1 WILD-TYPE	75	85	83

'MMEL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.069

Table S6797. Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MMEL1 MUTATED	1	1	4	0
MMEL1 WILD-TYPE	32	77	47	87

Figure S2567. Get High-res Image Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MMEL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.47

Table S6798. Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MMEL1 MUTATED	2	0	1	1	0
MMEL1 WILD-TYPE	63	59	41	33	57

'MMEL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.086 (Fisher's exact test), Q value = 0.19

Table S6799. Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MMEL1 MUTATED	0	0	0	1	1	0	2
MMEL1 WILD-TYPE	36	21	48	55	38	37	18

'MMEL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.22

Table S6800. Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MMEL1 MUTATED	5	0	1
MMEL1 WILD-TYPE	121	96	66

'MMEL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00238 (Fisher's exact test), Q value = 0.022

Table S6801. Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MMEL1 MUTATED	5	1	0	0
MMEL1 WILD-TYPE	51	104	60	68

Figure S2568. Get High-res Image Gene #692: 'MMEL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OSBPL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 0.82

Table S6802. Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OSBPL2 MUTATED	3	4	0	0	0
OSBPL2 WILD-TYPE	76	122	27	43	12

'OSBPL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.67

Table S6803. Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OSBPL2 MUTATED	2	1	1	0
OSBPL2 WILD-TYPE	69	75	33	63

'OSBPL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00537 (Fisher's exact test), Q value = 0.036

Table S6804. Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OSBPL2 MUTATED	6	1	0
OSBPL2 WILD-TYPE	72	85	85

Figure S2569. Get High-res Image Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OSBPL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0032

Table S6805. Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OSBPL2 MUTATED	5	0	2	0
OSBPL2 WILD-TYPE	28	78	49	87

Figure S2570. Get High-res Image Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OSBPL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 0.92

Table S6806. Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OSBPL2 MUTATED	2	1	0	1	1
OSBPL2 WILD-TYPE	63	58	42	33	56

'OSBPL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 0.21

Table S6807. Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OSBPL2 MUTATED	3	0	0	0	1	1	0
OSBPL2 WILD-TYPE	33	21	48	56	38	36	20

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S6808. Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OSBPL2 MUTATED	5	0	2
OSBPL2 WILD-TYPE	121	96	65

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00194 (Fisher's exact test), Q value = 0.02

Table S6809. Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OSBPL2 MUTATED	5	0	0	2
OSBPL2 WILD-TYPE	51	105	60	66

Figure S2571. Get High-res Image Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S6810. Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OSBPL2 MUTATED	3	0	1	0	0	0
OSBPL2 WILD-TYPE	31	18	58	38	19	43

'OSBPL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.31

Table S6811. Gene #693: 'OSBPL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OSBPL2 MUTATED	2	0	2
OSBPL2 WILD-TYPE	120	51	36

'TOX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.76

Table S6812. Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TOX MUTATED	2	6	1	0	0
TOX WILD-TYPE	77	120	26	43	12

'TOX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 0.46

Table S6813. Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TOX MUTATED	2	5	0	1
TOX WILD-TYPE	69	71	34	62

'TOX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S6814. Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TOX MUTATED	4	2	2
TOX WILD-TYPE	74	84	83

'TOX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.72

Table S6815. Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TOX MUTATED	2	2	2	2
TOX WILD-TYPE	31	76	49	85

'TOX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 0.85

Table S6816. Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TOX MUTATED	1	2	1	2	2
TOX WILD-TYPE	64	57	41	32	55

'TOX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.67

Table S6817. Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TOX MUTATED	0	0	2	2	1	1	2
TOX WILD-TYPE	36	21	46	54	38	36	18

'TOX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.89

Table S6818. Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TOX MUTATED	3	4	2
TOX WILD-TYPE	123	92	65

'TOX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.77

Table S6819. Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TOX MUTATED	2	2	3	2
TOX WILD-TYPE	54	103	57	66

'TOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 0.92

Table S6820. Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TOX MUTATED	2	0	2	2	0	1
TOX WILD-TYPE	32	18	57	36	19	42

'TOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.27

Table S6821. Gene #694: 'TOX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TOX MUTATED	2	2	3
TOX WILD-TYPE	120	49	35

'ROCK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S6822. Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ROCK1 MUTATED	3	9	1	0	2
ROCK1 WILD-TYPE	76	117	26	43	10

'ROCK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00535 (Fisher's exact test), Q value = 0.036

Table S6823. Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ROCK1 MUTATED	0	8	1	1
ROCK1 WILD-TYPE	71	68	33	62

Figure S2572. Get High-res Image Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ROCK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.59

Table S6824. Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ROCK1 MUTATED	6	3	4
ROCK1 WILD-TYPE	72	83	81

'ROCK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.087

Table S6825. Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ROCK1 MUTATED	3	3	6	1
ROCK1 WILD-TYPE	30	75	45	86

Figure S2573. Get High-res Image Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ROCK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.078

Table S6826. Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ROCK1 MUTATED	9	1	1	2	1
ROCK1 WILD-TYPE	56	58	41	32	56

Figure S2574. Get High-res Image Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ROCK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00603 (Fisher's exact test), Q value = 0.038

Table S6827. Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ROCK1 MUTATED	0	1	1	2	4	1	5
ROCK1 WILD-TYPE	36	20	47	54	35	36	15

Figure S2575. Get High-res Image Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.098

Table S6828. Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ROCK1 MUTATED	11	1	4
ROCK1 WILD-TYPE	115	95	63

Figure S2576. Get High-res Image Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0035

Table S6829. Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ROCK1 MUTATED	11	3	1	1
ROCK1 WILD-TYPE	45	102	59	67

Figure S2577. Get High-res Image Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 0.93

Table S6830. Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ROCK1 MUTATED	2	0	3	2	0	1
ROCK1 WILD-TYPE	32	18	56	36	19	42

'ROCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0727 (Fisher's exact test), Q value = 0.17

Table S6831. Gene #695: 'ROCK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ROCK1 MUTATED	3	1	4
ROCK1 WILD-TYPE	119	50	34

'LRP12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.14

Table S6832. Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LRP12 MUTATED	3	17	2	1	0
LRP12 WILD-TYPE	76	109	25	42	12

'LRP12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.18

Table S6833. Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LRP12 MUTATED	4	11	2	2
LRP12 WILD-TYPE	67	65	32	61

'LRP12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0881 (Fisher's exact test), Q value = 0.19

Table S6834. Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LRP12 MUTATED	10	3	7
LRP12 WILD-TYPE	68	83	78

'LRP12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00164 (Fisher's exact test), Q value = 0.018

Table S6835. Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LRP12 MUTATED	2	5	11	2
LRP12 WILD-TYPE	31	73	40	85

Figure S2578. Get High-res Image Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LRP12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.097

Table S6836. Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LRP12 MUTATED	7	2	2	6	1
LRP12 WILD-TYPE	58	57	40	28	56

Figure S2579. Get High-res Image Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LRP12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.3

Table S6837. Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LRP12 MUTATED	2	0	2	4	6	1	3
LRP12 WILD-TYPE	34	21	46	52	33	36	17

'LRP12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0018

Table S6838. Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LRP12 MUTATED	19	0	4
LRP12 WILD-TYPE	107	96	63

Figure S2580. Get High-res Image Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00101 (Fisher's exact test), Q value = 0.013

Table S6839. Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LRP12 MUTATED	11	7	0	5
LRP12 WILD-TYPE	45	98	60	63

Figure S2581. Get High-res Image Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.06

Table S6840. Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LRP12 MUTATED	5	4	6	2	0	0
LRP12 WILD-TYPE	29	14	53	36	19	43

Figure S2582. Get High-res Image Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.005

Table S6841. Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LRP12 MUTATED	6	1	10
LRP12 WILD-TYPE	116	50	28

Figure S2583. Get High-res Image Gene #696: 'LRP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C19ORF70 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.27

Table S6842. Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
C19ORF70 MUTATED	0	3	1	1	1
C19ORF70 WILD-TYPE	79	123	26	42	11

'C19ORF70 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.062

Table S6843. Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
C19ORF70 MUTATED	0	5	0	0
C19ORF70 WILD-TYPE	71	71	34	63

Figure S2584. Get High-res Image Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C19ORF70 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.094

Table S6844. Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
C19ORF70 MUTATED	4	0	1
C19ORF70 WILD-TYPE	74	86	84

Figure S2585. Get High-res Image Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C19ORF70 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.39

Table S6845. Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
C19ORF70 MUTATED	0	1	3	1
C19ORF70 WILD-TYPE	33	77	48	86

'C19ORF70 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0434 (Fisher's exact test), Q value = 0.12

Table S6846. Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
C19ORF70 MUTATED	4	0	0	1	0
C19ORF70 WILD-TYPE	61	59	42	33	57

Figure S2586. Get High-res Image Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C19ORF70 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.23

Table S6847. Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
C19ORF70 MUTATED	0	0	0	2	1	0	2
C19ORF70 WILD-TYPE	36	21	48	54	38	37	18

'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.29

Table S6848. Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
C19ORF70 MUTATED	5	1	0
C19ORF70 WILD-TYPE	121	95	67

'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.095

Table S6849. Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
C19ORF70 MUTATED	4	2	0	0
C19ORF70 WILD-TYPE	52	103	60	68

Figure S2587. Get High-res Image Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0857 (Fisher's exact test), Q value = 0.19

Table S6850. Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
C19ORF70 MUTATED	0	2	1	2	0	0
C19ORF70 WILD-TYPE	34	16	58	36	19	43

'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00458 (Fisher's exact test), Q value = 0.032

Table S6851. Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
C19ORF70 MUTATED	1	0	4
C19ORF70 WILD-TYPE	121	51	34

Figure S2588. Get High-res Image Gene #697: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA1217 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.28

Table S6852. Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA1217 MUTATED	2	12	0	3	1
KIAA1217 WILD-TYPE	77	114	27	40	11

'KIAA1217 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00831 (Fisher's exact test), Q value = 0.047

Table S6853. Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA1217 MUTATED	2	12	1	2
KIAA1217 WILD-TYPE	69	64	33	61

Figure S2589. Get High-res Image Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1217 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0031 (Fisher's exact test), Q value = 0.026

Table S6854. Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA1217 MUTATED	11	1	4
KIAA1217 WILD-TYPE	67	85	81

Figure S2590. Get High-res Image Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA1217 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.29

Table S6855. Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA1217 MUTATED	1	4	7	4
KIAA1217 WILD-TYPE	32	74	44	83

'KIAA1217 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0863 (Fisher's exact test), Q value = 0.19

Table S6856. Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA1217 MUTATED	8	1	1	1	2
KIAA1217 WILD-TYPE	57	58	41	33	55

'KIAA1217 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00212 (Fisher's exact test), Q value = 0.021

Table S6857. Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA1217 MUTATED	2	0	0	3	3	0	5
KIAA1217 WILD-TYPE	34	21	48	53	36	37	15

Figure S2591. Get High-res Image Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.3

Table S6858. Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA1217 MUTATED	12	3	4
KIAA1217 WILD-TYPE	114	93	63

'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.074

Table S6859. Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA1217 MUTATED	9	6	1	3
KIAA1217 WILD-TYPE	47	99	59	65

Figure S2592. Get High-res Image Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 0.64

Table S6860. Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA1217 MUTATED	3	0	3	5	1	2
KIAA1217 WILD-TYPE	31	18	56	33	18	41

'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.37

Table S6861. Gene #698: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA1217 MUTATED	9	1	4
KIAA1217 WILD-TYPE	113	50	34

'CENPN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.57

Table S6862. Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CENPN MUTATED	0	4	0	0	0
CENPN WILD-TYPE	79	122	27	43	12

'CENPN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S6863. Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CENPN MUTATED	0	1	2	1
CENPN WILD-TYPE	71	75	32	62

'CENPN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.33

Table S6864. Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CENPN MUTATED	2	0	1
CENPN WILD-TYPE	76	86	84

'CENPN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.3

Table S6865. Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CENPN MUTATED	0	1	2	0
CENPN WILD-TYPE	33	77	49	87

'CENPN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.091

Table S6866. Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CENPN MUTATED	4	0	0	0	0
CENPN WILD-TYPE	61	59	42	34	57

Figure S2593. Get High-res Image Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CENPN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.27

Table S6867. Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CENPN MUTATED	1	1	0	0	2	0	0
CENPN WILD-TYPE	35	20	48	56	37	37	20

'CENPN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S6868. Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CENPN MUTATED	4	0	0
CENPN WILD-TYPE	122	96	67

'CENPN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.5

Table S6869. Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CENPN MUTATED	1	3	0	0
CENPN WILD-TYPE	55	102	60	68

'CENPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 0.93

Table S6870. Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CENPN MUTATED	1	0	2	1	0	0
CENPN WILD-TYPE	33	18	57	37	19	43

'CENPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.49

Table S6871. Gene #699: 'CENPN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CENPN MUTATED	4	0	0
CENPN WILD-TYPE	118	51	38

'MAN2B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.059

Table S6872. Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MAN2B1 MUTATED	0	11	1	2	2
MAN2B1 WILD-TYPE	79	115	26	41	10

Figure S2594. Get High-res Image Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAN2B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00263 (Fisher's exact test), Q value = 0.024

Table S6873. Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MAN2B1 MUTATED	0	9	2	1
MAN2B1 WILD-TYPE	71	67	32	62

Figure S2595. Get High-res Image Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAN2B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.45

Table S6874. Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MAN2B1 MUTATED	5	2	6
MAN2B1 WILD-TYPE	73	84	79

'MAN2B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0846 (Fisher's exact test), Q value = 0.19

Table S6875. Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MAN2B1 MUTATED	2	5	5	1
MAN2B1 WILD-TYPE	31	73	46	86

'MAN2B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.014

Table S6876. Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MAN2B1 MUTATED	10	1	1	2	0
MAN2B1 WILD-TYPE	55	58	41	32	57

Figure S2596. Get High-res Image Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAN2B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00371 (Fisher's exact test), Q value = 0.029

Table S6877. Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MAN2B1 MUTATED	2	0	0	2	4	1	5
MAN2B1 WILD-TYPE	34	21	48	54	35	36	15

Figure S2597. Get High-res Image Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAN2B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.017

Table S6878. Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MAN2B1 MUTATED	14	1	1
MAN2B1 WILD-TYPE	112	95	66

Figure S2598. Get High-res Image Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAN2B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S6879. Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MAN2B1 MUTATED	11	4	1	0
MAN2B1 WILD-TYPE	45	101	59	68

Figure S2599. Get High-res Image Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAN2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.51

Table S6880. Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MAN2B1 MUTATED	1	0	5	4	0	1
MAN2B1 WILD-TYPE	33	18	54	34	19	42

'MAN2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S6881. Gene #700: 'MAN2B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MAN2B1 MUTATED	7	1	3
MAN2B1 WILD-TYPE	115	50	35

'KIAA0226 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0724 (Fisher's exact test), Q value = 0.17

Table S6882. Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KIAA0226 MUTATED	0	8	0	3	0
KIAA0226 WILD-TYPE	79	118	27	40	12

'KIAA0226 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.099

Table S6883. Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KIAA0226 MUTATED	0	7	2	2
KIAA0226 WILD-TYPE	71	69	32	61

Figure S2600. Get High-res Image Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0226 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S6884. Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KIAA0226 MUTATED	6	2	3
KIAA0226 WILD-TYPE	72	84	82

'KIAA0226 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 0.57

Table S6885. Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KIAA0226 MUTATED	1	4	4	2
KIAA0226 WILD-TYPE	32	74	47	85

'KIAA0226 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.068

Table S6886. Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KIAA0226 MUTATED	7	2	0	2	0
KIAA0226 WILD-TYPE	58	57	42	32	57

Figure S2601. Get High-res Image Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA0226 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0813 (Fisher's exact test), Q value = 0.18

Table S6887. Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KIAA0226 MUTATED	3	0	1	1	4	0	2
KIAA0226 WILD-TYPE	33	21	47	55	35	37	18

'KIAA0226 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00234 (Fisher's exact test), Q value = 0.022

Table S6888. Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KIAA0226 MUTATED	11	1	0
KIAA0226 WILD-TYPE	115	95	67

Figure S2602. Get High-res Image Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0226 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00555 (Fisher's exact test), Q value = 0.036

Table S6889. Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KIAA0226 MUTATED	7	4	0	1
KIAA0226 WILD-TYPE	49	101	60	67

Figure S2603. Get High-res Image Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0226 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.59

Table S6890. Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KIAA0226 MUTATED	3	0	5	1	0	1
KIAA0226 WILD-TYPE	31	18	54	37	19	42

'KIAA0226 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0448 (Fisher's exact test), Q value = 0.13

Table S6891. Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KIAA0226 MUTATED	4	1	5
KIAA0226 WILD-TYPE	118	50	33

Figure S2604. Get High-res Image Gene #701: 'KIAA0226 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.64

Table S6892. Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SP6 MUTATED	0	3	0	0	0
SP6 WILD-TYPE	79	123	27	43	12

'SP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.27

Table S6893. Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SP6 MUTATED	0	3	0	0
SP6 WILD-TYPE	71	73	34	63

'SP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.33

Table S6894. Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SP6 MUTATED	2	0	1
SP6 WILD-TYPE	76	86	84

'SP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.26

Table S6895. Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SP6 MUTATED	1	2	0	0
SP6 WILD-TYPE	32	76	51	87

'SP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.44

Table S6896. Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SP6 MUTATED	3	0	0
SP6 WILD-TYPE	123	96	67

'SP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.36

Table S6897. Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SP6 MUTATED	2	1	0	0
SP6 WILD-TYPE	54	104	60	68

'SP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 0.92

Table S6898. Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SP6 MUTATED	1	0	1	1	0	0
SP6 WILD-TYPE	33	18	58	37	19	43

'SP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.66

Table S6899. Gene #702: 'SP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SP6 MUTATED	2	0	1
SP6 WILD-TYPE	120	51	37

'CHST9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.52

Table S6900. Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CHST9 MUTATED	0	5	0	1	0
CHST9 WILD-TYPE	79	121	27	42	12

'CHST9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.34

Table S6901. Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CHST9 MUTATED	0	2	1	0
CHST9 WILD-TYPE	71	74	33	63

'CHST9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.56

Table S6902. Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CHST9 MUTATED	3	1	2
CHST9 WILD-TYPE	75	85	83

'CHST9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.23

Table S6903. Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CHST9 MUTATED	0	0	3	3
CHST9 WILD-TYPE	33	78	48	84

'CHST9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.74

Table S6904. Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CHST9 MUTATED	2	2	1	0	0
CHST9 WILD-TYPE	63	57	41	34	57

'CHST9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S6905. Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CHST9 MUTATED	1	1	1	1	1	0	0
CHST9 WILD-TYPE	35	20	47	55	38	37	20

'CHST9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.67

Table S6906. Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CHST9 MUTATED	4	1	1
CHST9 WILD-TYPE	122	95	66

'CHST9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.38

Table S6907. Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CHST9 MUTATED	3	2	0	1
CHST9 WILD-TYPE	53	103	60	67

'CHST9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S6908. Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CHST9 MUTATED	1	1	0	1	0	0
CHST9 WILD-TYPE	33	17	59	37	19	43

'CHST9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 0.82

Table S6909. Gene #703: 'CHST9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CHST9 MUTATED	3	0	0
CHST9 WILD-TYPE	119	51	38

'ETV1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.6

Table S6910. Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ETV1 MUTATED	3	7	0	0	0
ETV1 WILD-TYPE	76	119	27	43	12

'ETV1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.29

Table S6911. Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ETV1 MUTATED	2	6	0	1
ETV1 WILD-TYPE	69	70	34	62

'ETV1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 0.013

Table S6912. Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ETV1 MUTATED	8	0	2
ETV1 WILD-TYPE	70	86	83

Figure S2605. Get High-res Image Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ETV1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.058

Table S6913. Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ETV1 MUTATED	3	1	5	1
ETV1 WILD-TYPE	30	77	46	86

Figure S2606. Get High-res Image Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ETV1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.44

Table S6914. Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ETV1 MUTATED	4	0	1	1	1
ETV1 WILD-TYPE	61	59	41	33	56

'ETV1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.41

Table S6915. Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ETV1 MUTATED	1	0	0	1	2	1	2
ETV1 WILD-TYPE	35	21	48	55	37	36	18

'ETV1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00819 (Fisher's exact test), Q value = 0.046

Table S6916. Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ETV1 MUTATED	9	0	1
ETV1 WILD-TYPE	117	96	66

Figure S2607. Get High-res Image Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ETV1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.12

Table S6917. Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ETV1 MUTATED	5	2	0	3
ETV1 WILD-TYPE	51	103	60	65

Figure S2608. Get High-res Image Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ETV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.31

Table S6918. Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ETV1 MUTATED	3	0	5	1	0	0
ETV1 WILD-TYPE	31	18	54	37	19	43

'ETV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0466 (Fisher's exact test), Q value = 0.13

Table S6919. Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ETV1 MUTATED	5	0	4
ETV1 WILD-TYPE	117	51	34

Figure S2609. Get High-res Image Gene #704: 'ETV1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NOL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.18

Table S6920. Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NOL6 MUTATED	1	12	1	1	1
NOL6 WILD-TYPE	78	114	26	42	11

'NOL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0037

Table S6921. Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NOL6 MUTATED	0	12	1	1
NOL6 WILD-TYPE	71	64	33	62

Figure S2610. Get High-res Image Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NOL6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00921 (Fisher's exact test), Q value = 0.049

Table S6922. Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NOL6 MUTATED	10	2	2
NOL6 WILD-TYPE	68	84	83

Figure S2611. Get High-res Image Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NOL6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.28

Table S6923. Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NOL6 MUTATED	2	2	6	4
NOL6 WILD-TYPE	31	76	45	83

'NOL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.12

Table S6924. Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NOL6 MUTATED	8	3	2	3	0
NOL6 WILD-TYPE	57	56	40	31	57

Figure S2612. Get High-res Image Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NOL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0856 (Fisher's exact test), Q value = 0.19

Table S6925. Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NOL6 MUTATED	1	0	2	3	7	1	2
NOL6 WILD-TYPE	35	21	46	53	32	36	18

'NOL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00507 (Fisher's exact test), Q value = 0.034

Table S6926. Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NOL6 MUTATED	14	2	1
NOL6 WILD-TYPE	112	94	66

Figure S2613. Get High-res Image Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S6927. Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NOL6 MUTATED	12	1	2	2
NOL6 WILD-TYPE	44	104	58	66

Figure S2614. Get High-res Image Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NOL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.67

Table S6928. Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NOL6 MUTATED	3	2	5	1	0	2
NOL6 WILD-TYPE	31	16	54	37	19	41

'NOL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S6929. Gene #705: 'NOL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NOL6 MUTATED	7	2	4
NOL6 WILD-TYPE	115	49	34

'TAC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.71

Table S6930. Gene #706: 'TAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TAC4 MUTATED	0	2	0	1	0
TAC4 WILD-TYPE	79	124	27	42	12

'TAC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.7

Table S6931. Gene #706: 'TAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TAC4 MUTATED	0	2	0	1
TAC4 WILD-TYPE	71	74	34	62

'TAC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.7

Table S6932. Gene #706: 'TAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TAC4 MUTATED	2	0	0	0	1
TAC4 WILD-TYPE	63	59	42	34	56

'TAC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.34

Table S6933. Gene #706: 'TAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TAC4 MUTATED	1	0	0	0	1	0	1
TAC4 WILD-TYPE	35	21	48	56	38	37	19

'TAC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.45

Table S6934. Gene #706: 'TAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TAC4 MUTATED	3	0	0
TAC4 WILD-TYPE	123	96	67

'TAC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.36

Table S6935. Gene #706: 'TAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TAC4 MUTATED	2	1	0	0
TAC4 WILD-TYPE	54	104	60	68

'RNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S6936. Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RNMT MUTATED	0	7	1	0	0
RNMT WILD-TYPE	79	119	26	43	12

'RNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.34

Table S6937. Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RNMT MUTATED	0	3	2	2
RNMT WILD-TYPE	71	73	32	61

'RNMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0035 (Fisher's exact test), Q value = 0.028

Table S6938. Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RNMT MUTATED	6	0	1
RNMT WILD-TYPE	72	86	84

Figure S2615. Get High-res Image Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RNMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00995 (Fisher's exact test), Q value = 0.051

Table S6939. Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RNMT MUTATED	3	1	3	0
RNMT WILD-TYPE	30	77	48	87

Figure S2616. Get High-res Image Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00346 (Fisher's exact test), Q value = 0.028

Table S6940. Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RNMT MUTATED	7	1	0	0	0
RNMT WILD-TYPE	58	58	42	34	57

Figure S2617. Get High-res Image Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 0.14

Table S6941. Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RNMT MUTATED	4	0	0	1	2	0	1
RNMT WILD-TYPE	32	21	48	55	37	37	19

'RNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00458 (Fisher's exact test), Q value = 0.032

Table S6942. Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RNMT MUTATED	8	0	0
RNMT WILD-TYPE	118	96	67

Figure S2618. Get High-res Image Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.12

Table S6943. Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RNMT MUTATED	4	4	0	0
RNMT WILD-TYPE	52	101	60	68

Figure S2619. Get High-res Image Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.57

Table S6944. Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RNMT MUTATED	1	1	4	1	0	0
RNMT WILD-TYPE	33	17	55	37	19	43

'RNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.43

Table S6945. Gene #707: 'RNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RNMT MUTATED	6	0	1
RNMT WILD-TYPE	116	51	37

'HOOK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.29

Table S6946. Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HOOK1 MUTATED	0	6	0	0	0
HOOK1 WILD-TYPE	79	120	27	43	12

'HOOK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.47

Table S6947. Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HOOK1 MUTATED	0	3	1	1
HOOK1 WILD-TYPE	71	73	33	62

'HOOK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.32

Table S6948. Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HOOK1 MUTATED	3	2	0
HOOK1 WILD-TYPE	75	84	85

'HOOK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0806 (Fisher's exact test), Q value = 0.18

Table S6949. Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HOOK1 MUTATED	1	0	3	1
HOOK1 WILD-TYPE	32	78	48	86

'HOOK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.12

Table S6950. Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HOOK1 MUTATED	4	0	0	1	0
HOOK1 WILD-TYPE	61	59	42	33	57

Figure S2620. Get High-res Image Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HOOK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.3

Table S6951. Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HOOK1 MUTATED	1	0	0	1	1	0	2
HOOK1 WILD-TYPE	35	21	48	55	38	37	18

'HOOK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.29

Table S6952. Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HOOK1 MUTATED	5	1	0
HOOK1 WILD-TYPE	121	95	67

'HOOK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S6953. Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HOOK1 MUTATED	3	3	0	0
HOOK1 WILD-TYPE	53	102	60	68

'HOOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.69

Table S6954. Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HOOK1 MUTATED	1	1	1	1	0	0
HOOK1 WILD-TYPE	33	17	58	37	19	43

'HOOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.31

Table S6955. Gene #708: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HOOK1 MUTATED	2	0	2
HOOK1 WILD-TYPE	120	51	36

'CCDC25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.5

Table S6956. Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CCDC25 MUTATED	0	2	1	0	0
CCDC25 WILD-TYPE	79	124	26	43	12

'CCDC25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.33

Table S6957. Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CCDC25 MUTATED	2	0	1
CCDC25 WILD-TYPE	76	86	84

'CCDC25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.053

Table S6958. Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CCDC25 MUTATED	0	0	3	0
CCDC25 WILD-TYPE	33	78	48	87

Figure S2621. Get High-res Image Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.48

Table S6959. Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CCDC25 MUTATED	2	0	1	0	0
CCDC25 WILD-TYPE	63	59	41	34	57

'CCDC25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 0.76

Table S6960. Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CCDC25 MUTATED	0	0	0	2	1	0	0
CCDC25 WILD-TYPE	36	21	48	54	38	37	20

'CCDC25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.45

Table S6961. Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CCDC25 MUTATED	3	0	0
CCDC25 WILD-TYPE	123	96	67

'CCDC25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00681 (Fisher's exact test), Q value = 0.041

Table S6962. Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CCDC25 MUTATED	3	0	0	0
CCDC25 WILD-TYPE	53	105	60	68

Figure S2622. Get High-res Image Gene #709: 'CCDC25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IQSEC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.21

Table S6963. Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IQSEC2 MUTATED	1	9	1	0	1
IQSEC2 WILD-TYPE	78	117	26	43	11

'IQSEC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.061

Table S6964. Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IQSEC2 MUTATED	0	8	1	2
IQSEC2 WILD-TYPE	71	68	33	61

Figure S2623. Get High-res Image Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IQSEC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.14

Table S6965. Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IQSEC2 MUTATED	7	1	3
IQSEC2 WILD-TYPE	71	85	82

'IQSEC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0571 (Fisher's exact test), Q value = 0.15

Table S6966. Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IQSEC2 MUTATED	0	2	6	3
IQSEC2 WILD-TYPE	33	76	45	84

'IQSEC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.23

Table S6967. Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IQSEC2 MUTATED	6	2	1	1	0
IQSEC2 WILD-TYPE	59	57	41	33	57

'IQSEC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.73

Table S6968. Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IQSEC2 MUTATED	2	0	2	2	3	0	1
IQSEC2 WILD-TYPE	34	21	46	54	36	37	19

'IQSEC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.093

Table S6969. Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IQSEC2 MUTATED	10	1	1
IQSEC2 WILD-TYPE	116	95	66

Figure S2624. Get High-res Image Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IQSEC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.069

Table S6970. Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IQSEC2 MUTATED	7	3	1	1
IQSEC2 WILD-TYPE	49	102	59	67

Figure S2625. Get High-res Image Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IQSEC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 0.66

Table S6971. Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IQSEC2 MUTATED	2	2	4	1	0	1
IQSEC2 WILD-TYPE	32	16	55	37	19	42

'IQSEC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.3

Table S6972. Gene #710: 'IQSEC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IQSEC2 MUTATED	5	1	4
IQSEC2 WILD-TYPE	117	50	34

'IBTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0063 (Fisher's exact test), Q value = 0.039

Table S6973. Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
IBTK MUTATED	0	14	2	1	0
IBTK WILD-TYPE	79	112	25	42	12

Figure S2626. Get High-res Image Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IBTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.077

Table S6974. Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
IBTK MUTATED	0	7	3	2
IBTK WILD-TYPE	71	69	31	61

Figure S2627. Get High-res Image Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IBTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.064

Table S6975. Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
IBTK MUTATED	11	3	3
IBTK WILD-TYPE	67	83	82

Figure S2628. Get High-res Image Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IBTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0065 (Fisher's exact test), Q value = 0.04

Table S6976. Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
IBTK MUTATED	6	2	6	3
IBTK WILD-TYPE	27	76	45	84

Figure S2629. Get High-res Image Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.095

Table S6977. Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
IBTK MUTATED	8	3	1	1	0
IBTK WILD-TYPE	57	56	41	33	57

Figure S2630. Get High-res Image Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IBTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00632 (Fisher's exact test), Q value = 0.039

Table S6978. Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
IBTK MUTATED	5	0	0	2	3	0	3
IBTK WILD-TYPE	31	21	48	54	36	37	17

Figure S2631. Get High-res Image Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.12

Table S6979. Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
IBTK MUTATED	13	4	1
IBTK WILD-TYPE	113	92	66

Figure S2632. Get High-res Image Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IBTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00204 (Fisher's exact test), Q value = 0.02

Table S6980. Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
IBTK MUTATED	10	4	3	1
IBTK WILD-TYPE	46	101	57	67

Figure S2633. Get High-res Image Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.48

Table S6981. Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
IBTK MUTATED	2	0	7	1	0	2
IBTK WILD-TYPE	32	18	52	37	19	41

'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 0.78

Table S6982. Gene #711: 'IBTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
IBTK MUTATED	6	3	3
IBTK WILD-TYPE	116	48	35

'TDRD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.54

Table S6983. Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
TDRD3 MUTATED	1	6	1	2	1
TDRD3 WILD-TYPE	78	120	26	41	11

'TDRD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.6

Table S6984. Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
TDRD3 MUTATED	2	5	1	1
TDRD3 WILD-TYPE	69	71	33	62

'TDRD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.3

Table S6985. Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
TDRD3 MUTATED	5	1	3
TDRD3 WILD-TYPE	73	85	82

'TDRD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0736 (Fisher's exact test), Q value = 0.17

Table S6986. Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
TDRD3 MUTATED	0	1	5	3
TDRD3 WILD-TYPE	33	77	46	84

'TDRD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 0.83

Table S6987. Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
TDRD3 MUTATED	2	1	2	2	3
TDRD3 WILD-TYPE	63	58	40	32	54

'TDRD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 0.91

Table S6988. Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
TDRD3 MUTATED	1	0	1	4	2	1	1
TDRD3 WILD-TYPE	35	21	47	52	37	36	19

'TDRD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S6989. Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
TDRD3 MUTATED	6	3	2
TDRD3 WILD-TYPE	120	93	65

'TDRD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.36

Table S6990. Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
TDRD3 MUTATED	4	2	1	4
TDRD3 WILD-TYPE	52	103	59	64

'TDRD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.1

Table S6991. Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
TDRD3 MUTATED	3	2	0	0	1	2
TDRD3 WILD-TYPE	31	16	59	38	18	41

Figure S2634. Get High-res Image Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TDRD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 0.77

Table S6992. Gene #712: 'TDRD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
TDRD3 MUTATED	5	1	2
TDRD3 WILD-TYPE	117	50	36

'HS6ST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.37

Table S6993. Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HS6ST2 MUTATED	0	6	0	1	0
HS6ST2 WILD-TYPE	79	120	27	42	12

'HS6ST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.11

Table S6994. Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HS6ST2 MUTATED	0	4	0	0
HS6ST2 WILD-TYPE	71	72	34	63

Figure S2635. Get High-res Image Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HS6ST2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.56

Table S6995. Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HS6ST2 MUTATED	3	1	2
HS6ST2 WILD-TYPE	75	85	83

'HS6ST2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.75

Table S6996. Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HS6ST2 MUTATED	1	2	2	1
HS6ST2 WILD-TYPE	32	76	49	86

'HS6ST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 0.2

Table S6997. Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HS6ST2 MUTATED	3	0	2	2	0
HS6ST2 WILD-TYPE	62	59	40	32	57

'HS6ST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0871 (Fisher's exact test), Q value = 0.19

Table S6998. Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HS6ST2 MUTATED	0	0	0	3	2	0	2
HS6ST2 WILD-TYPE	36	21	48	53	37	37	18

'HS6ST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.18

Table S6999. Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HS6ST2 MUTATED	6	1	0
HS6ST2 WILD-TYPE	120	95	67

'HS6ST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0357 (Fisher's exact test), Q value = 0.11

Table S7000. Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HS6ST2 MUTATED	4	3	0	0
HS6ST2 WILD-TYPE	52	102	60	68

Figure S2636. Get High-res Image Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HS6ST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.094

Table S7001. Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HS6ST2 MUTATED	0	1	0	3	0	0
HS6ST2 WILD-TYPE	34	17	59	35	19	43

Figure S2637. Get High-res Image Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HS6ST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.31

Table S7002. Gene #713: 'HS6ST2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HS6ST2 MUTATED	2	0	2
HS6ST2 WILD-TYPE	120	51	36

'EPB41L5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.22

Table S7003. Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EPB41L5 MUTATED	0	7	1	0	0
EPB41L5 WILD-TYPE	79	119	26	43	12

'EPB41L5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.22

Table S7004. Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EPB41L5 MUTATED	1	5	1	0
EPB41L5 WILD-TYPE	70	71	33	63

'EPB41L5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.0061

Table S7005. Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EPB41L5 MUTATED	7	0	0
EPB41L5 WILD-TYPE	71	86	85

Figure S2638. Get High-res Image Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPB41L5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00546 (Fisher's exact test), Q value = 0.036

Table S7006. Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EPB41L5 MUTATED	1	0	5	1
EPB41L5 WILD-TYPE	32	78	46	86

Figure S2639. Get High-res Image Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPB41L5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00645 (Fisher's exact test), Q value = 0.039

Table S7007. Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EPB41L5 MUTATED	6	0	1	0	0
EPB41L5 WILD-TYPE	59	59	41	34	57

Figure S2640. Get High-res Image Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPB41L5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0879 (Fisher's exact test), Q value = 0.19

Table S7008. Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EPB41L5 MUTATED	0	0	0	3	2	0	2
EPB41L5 WILD-TYPE	36	21	48	53	37	37	18

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.16

Table S7009. Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EPB41L5 MUTATED	7	1	0
EPB41L5 WILD-TYPE	119	95	67

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.053

Table S7010. Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EPB41L5 MUTATED	5	3	0	0
EPB41L5 WILD-TYPE	51	102	60	68

Figure S2641. Get High-res Image Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.17

Table S7011. Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EPB41L5 MUTATED	1	3	2	1	0	0
EPB41L5 WILD-TYPE	33	15	57	37	19	43

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S7012. Gene #714: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EPB41L5 MUTATED	4	0	3
EPB41L5 WILD-TYPE	118	51	35

'ARID5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.34

Table S7013. Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ARID5B MUTATED	1	8	0	1	1
ARID5B WILD-TYPE	78	118	27	42	11

'ARID5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.07

Table S7014. Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ARID5B MUTATED	0	6	0	1
ARID5B WILD-TYPE	71	70	34	62

Figure S2642. Get High-res Image Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.073

Table S7015. Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ARID5B MUTATED	6	0	5
ARID5B WILD-TYPE	72	86	80

Figure S2643. Get High-res Image Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ARID5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.36

Table S7016. Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ARID5B MUTATED	1	3	5	2
ARID5B WILD-TYPE	32	75	46	85

'ARID5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.26

Table S7017. Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ARID5B MUTATED	6	2	0	2	1
ARID5B WILD-TYPE	59	57	42	32	56

'ARID5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0035 (Fisher's exact test), Q value = 0.028

Table S7018. Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ARID5B MUTATED	2	0	1	1	2	0	5
ARID5B WILD-TYPE	34	21	47	55	37	37	15

Figure S2644. Get High-res Image Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARID5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.53

Table S7019. Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ARID5B MUTATED	7	2	2
ARID5B WILD-TYPE	119	94	65

'ARID5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0467 (Fisher's exact test), Q value = 0.13

Table S7020. Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ARID5B MUTATED	5	5	0	1
ARID5B WILD-TYPE	51	100	60	67

Figure S2645. Get High-res Image Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.2

Table S7021. Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ARID5B MUTATED	0	0	3	4	0	0
ARID5B WILD-TYPE	34	18	56	34	19	43

'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S7022. Gene #715: 'ARID5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ARID5B MUTATED	4	0	3
ARID5B WILD-TYPE	118	51	35

'HECA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00599 (Fisher's exact test), Q value = 0.038

Table S7023. Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HECA MUTATED	0	11	0	0	1
HECA WILD-TYPE	79	115	27	43	11

Figure S2646. Get High-res Image Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HECA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.22

Table S7024. Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HECA MUTATED	0	5	2	3
HECA WILD-TYPE	71	71	32	60

'HECA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.07

Table S7025. Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HECA MUTATED	6	0	3
HECA WILD-TYPE	72	86	82

Figure S2647. Get High-res Image Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HECA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.11

Table S7026. Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HECA MUTATED	2	3	4	0
HECA WILD-TYPE	31	75	47	87

Figure S2648. Get High-res Image Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HECA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.005

Table S7027. Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HECA MUTATED	9	0	2	0	0
HECA WILD-TYPE	56	59	40	34	57

Figure S2649. Get High-res Image Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HECA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 0.094

Table S7028. Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HECA MUTATED	3	0	0	4	1	0	3
HECA WILD-TYPE	33	21	48	52	38	37	17

Figure S2650. Get High-res Image Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HECA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0037

Table S7029. Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HECA MUTATED	12	0	0
HECA WILD-TYPE	114	96	67

Figure S2651. Get High-res Image Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HECA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00318 (Fisher's exact test), Q value = 0.026

Table S7030. Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HECA MUTATED	6	6	0	0
HECA WILD-TYPE	50	99	60	68

Figure S2652. Get High-res Image Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HECA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.67

Table S7031. Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HECA MUTATED	1	1	3	2	0	0
HECA WILD-TYPE	33	17	56	36	19	43

'HECA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.39

Table S7032. Gene #716: 'HECA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HECA MUTATED	5	0	2
HECA WILD-TYPE	117	51	36

'RHOBTB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.1

Table S7033. Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RHOBTB2 MUTATED	0	11	2	2	1
RHOBTB2 WILD-TYPE	79	115	25	41	11

Figure S2653. Get High-res Image Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RHOBTB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0753 (Fisher's exact test), Q value = 0.17

Table S7034. Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RHOBTB2 MUTATED	1	8	1	2
RHOBTB2 WILD-TYPE	70	68	33	61

'RHOBTB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00082 (Fisher's exact test), Q value = 0.012

Table S7035. Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RHOBTB2 MUTATED	12	2	2
RHOBTB2 WILD-TYPE	66	84	83

Figure S2654. Get High-res Image Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RHOBTB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0757 (Fisher's exact test), Q value = 0.17

Table S7036. Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RHOBTB2 MUTATED	3	3	7	3
RHOBTB2 WILD-TYPE	30	75	44	84

'RHOBTB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.069

Table S7037. Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RHOBTB2 MUTATED	9	1	1	1	1
RHOBTB2 WILD-TYPE	56	58	41	33	56

Figure S2655. Get High-res Image Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RHOBTB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 0.14

Table S7038. Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RHOBTB2 MUTATED	4	0	0	4	3	0	2
RHOBTB2 WILD-TYPE	32	21	48	52	36	37	18

'RHOBTB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00125 (Fisher's exact test), Q value = 0.015

Table S7039. Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RHOBTB2 MUTATED	14	1	1
RHOBTB2 WILD-TYPE	112	95	66

Figure S2656. Get High-res Image Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RHOBTB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S7040. Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RHOBTB2 MUTATED	11	4	0	1
RHOBTB2 WILD-TYPE	45	101	60	67

Figure S2657. Get High-res Image Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RHOBTB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.36

Table S7041. Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RHOBTB2 MUTATED	2	1	6	2	0	0
RHOBTB2 WILD-TYPE	32	17	53	36	19	43

'RHOBTB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0205 (Fisher's exact test), Q value = 0.078

Table S7042. Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RHOBTB2 MUTATED	6	0	5
RHOBTB2 WILD-TYPE	116	51	33

Figure S2658. Get High-res Image Gene #717: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EML3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.25

Table S7043. Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EML3 MUTATED	0	6	1	2	1
EML3 WILD-TYPE	79	120	26	41	11

'EML3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.43

Table S7044. Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EML3 MUTATED	2	4	3	1
EML3 WILD-TYPE	69	72	31	62

'EML3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 0.091

Table S7045. Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EML3 MUTATED	5	0	2
EML3 WILD-TYPE	73	86	83

Figure S2659. Get High-res Image Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EML3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.29

Table S7046. Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EML3 MUTATED	0	1	4	2
EML3 WILD-TYPE	33	77	47	85

'EML3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.24

Table S7047. Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EML3 MUTATED	5	0	2	2	1
EML3 WILD-TYPE	60	59	40	32	56

'EML3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.54

Table S7048. Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EML3 MUTATED	2	1	0	2	2	1	2
EML3 WILD-TYPE	34	20	48	54	37	36	18

'EML3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.054

Table S7049. Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EML3 MUTATED	9	1	0
EML3 WILD-TYPE	117	95	67

Figure S2660. Get High-res Image Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EML3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.26

Table S7050. Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EML3 MUTATED	3	6	0	1
EML3 WILD-TYPE	53	99	60	67

'EML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.53

Table S7051. Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EML3 MUTATED	1	1	3	3	0	0
EML3 WILD-TYPE	33	17	56	35	19	43

'EML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.37

Table S7052. Gene #718: 'EML3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EML3 MUTATED	6	0	2
EML3 WILD-TYPE	116	51	36

'EIF2C4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.78

Table S7053. Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
EIF2C4 MUTATED	3	5	0	1	1
EIF2C4 WILD-TYPE	76	121	27	42	11

'EIF2C4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.46

Table S7054. Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
EIF2C4 MUTATED	2	5	0	1
EIF2C4 WILD-TYPE	69	71	34	62

'EIF2C4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.13

Table S7055. Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
EIF2C4 MUTATED	5	3	0
EIF2C4 WILD-TYPE	73	83	85

Figure S2661. Get High-res Image Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EIF2C4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.42

Table S7056. Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
EIF2C4 MUTATED	2	1	3	2
EIF2C4 WILD-TYPE	31	77	48	85

'EIF2C4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.49

Table S7057. Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
EIF2C4 MUTATED	5	1	1	0	2
EIF2C4 WILD-TYPE	60	58	41	34	55

'EIF2C4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.49

Table S7058. Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
EIF2C4 MUTATED	1	0	0	2	2	2	2
EIF2C4 WILD-TYPE	35	21	48	54	37	35	18

'EIF2C4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 0.89

Table S7059. Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
EIF2C4 MUTATED	4	3	3
EIF2C4 WILD-TYPE	122	93	64

'EIF2C4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.17

Table S7060. Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
EIF2C4 MUTATED	4	1	1	4
EIF2C4 WILD-TYPE	52	104	59	64

'EIF2C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.43

Table S7061. Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
EIF2C4 MUTATED	1	1	2	1	2	0
EIF2C4 WILD-TYPE	33	17	57	37	17	43

'EIF2C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 0.92

Table S7062. Gene #719: 'EIF2C4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
EIF2C4 MUTATED	5	1	1
EIF2C4 WILD-TYPE	117	50	37

'LSS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0595 (Fisher's exact test), Q value = 0.15

Table S7063. Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
LSS MUTATED	0	7	2	0	0
LSS WILD-TYPE	79	119	25	43	12

'LSS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00535 (Fisher's exact test), Q value = 0.036

Table S7064. Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
LSS MUTATED	0	6	2	0
LSS WILD-TYPE	71	70	32	63

Figure S2662. Get High-res Image Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LSS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0021

Table S7065. Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
LSS MUTATED	8	0	0
LSS WILD-TYPE	70	86	85

Figure S2663. Get High-res Image Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LSS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.11

Table S7066. Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
LSS MUTATED	1	1	5	1
LSS WILD-TYPE	32	77	46	86

Figure S2664. Get High-res Image Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LSS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00193 (Fisher's exact test), Q value = 0.02

Table S7067. Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
LSS MUTATED	7	0	1	0	0
LSS WILD-TYPE	58	59	41	34	57

Figure S2665. Get High-res Image Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LSS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.31

Table S7068. Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
LSS MUTATED	1	0	0	3	2	0	2
LSS WILD-TYPE	35	21	48	53	37	37	18

'LSS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.22

Table S7069. Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
LSS MUTATED	7	2	0
LSS WILD-TYPE	119	94	67

'LSS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.12

Table S7070. Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
LSS MUTATED	5	3	1	0
LSS WILD-TYPE	51	102	59	68

Figure S2666. Get High-res Image Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LSS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S7071. Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
LSS MUTATED	0	2	3	2	0	1
LSS WILD-TYPE	34	16	56	36	19	42

'LSS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.77

Table S7072. Gene #720: 'LSS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
LSS MUTATED	5	1	2
LSS WILD-TYPE	117	50	36

'MMP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.36

Table S7073. Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MMP10 MUTATED	1	6	0	0	1
MMP10 WILD-TYPE	78	120	27	43	11

'MMP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.21

Table S7074. Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MMP10 MUTATED	1	6	0	1
MMP10 WILD-TYPE	70	70	34	62

'MMP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S7075. Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MMP10 MUTATED	5	1	1
MMP10 WILD-TYPE	73	85	84

'MMP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.444 (Fisher's exact test), Q value = 0.55

Table S7076. Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MMP10 MUTATED	2	1	2	2
MMP10 WILD-TYPE	31	77	49	85

'MMP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.12

Table S7077. Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MMP10 MUTATED	4	0	0	1	0
MMP10 WILD-TYPE	61	59	42	33	57

Figure S2667. Get High-res Image Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MMP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00426 (Fisher's exact test), Q value = 0.031

Table S7078. Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MMP10 MUTATED	1	0	0	0	1	0	3
MMP10 WILD-TYPE	35	21	48	56	38	37	17

Figure S2668. Get High-res Image Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MMP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 0.95

Table S7079. Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MMP10 MUTATED	4	2	2
MMP10 WILD-TYPE	122	94	65

'MMP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.23

Table S7080. Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MMP10 MUTATED	4	3	0	1
MMP10 WILD-TYPE	52	102	60	67

'MMP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.64

Table S7081. Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MMP10 MUTATED	2	0	2	2	0	0
MMP10 WILD-TYPE	32	18	57	36	19	43

'MMP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.55

Table S7082. Gene #721: 'MMP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MMP10 MUTATED	5	0	1
MMP10 WILD-TYPE	117	51	37

'SLC7A13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.11

Table S7083. Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLC7A13 MUTATED	0	9	0	0	0
SLC7A13 WILD-TYPE	79	117	27	43	12

Figure S2669. Get High-res Image Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC7A13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00565 (Fisher's exact test), Q value = 0.036

Table S7084. Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLC7A13 MUTATED	0	6	2	0
SLC7A13 WILD-TYPE	71	70	32	63

Figure S2670. Get High-res Image Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC7A13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.29

Table S7085. Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
SLC7A13 MUTATED	3	0	3
SLC7A13 WILD-TYPE	75	86	82

'SLC7A13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.23

Table S7086. Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
SLC7A13 MUTATED	1	2	3	0
SLC7A13 WILD-TYPE	32	76	48	87

'SLC7A13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 0.16

Table S7087. Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLC7A13 MUTATED	6	1	1	1	0
SLC7A13 WILD-TYPE	59	58	41	33	57

'SLC7A13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.21

Table S7088. Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLC7A13 MUTATED	3	0	0	3	1	0	2
SLC7A13 WILD-TYPE	33	21	48	53	38	37	18

'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.091

Table S7089. Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLC7A13 MUTATED	8	1	0
SLC7A13 WILD-TYPE	118	95	67

Figure S2671. Get High-res Image Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.12

Table S7090. Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLC7A13 MUTATED	5	3	1	0
SLC7A13 WILD-TYPE	51	102	59	68

Figure S2672. Get High-res Image Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.7

Table S7091. Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLC7A13 MUTATED	1	2	2	1	0	1
SLC7A13 WILD-TYPE	33	16	57	37	19	42

'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.34

Table S7092. Gene #722: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLC7A13 MUTATED	3	1	3
SLC7A13 WILD-TYPE	119	50	35

'FANCA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.37

Table S7093. Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FANCA MUTATED	0	6	0	1	0
FANCA WILD-TYPE	79	120	27	42	12

'FANCA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.53

Table S7094. Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
FANCA MUTATED	1	3	1	0
FANCA WILD-TYPE	70	73	33	63

'FANCA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00349 (Fisher's exact test), Q value = 0.028

Table S7095. Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FANCA MUTATED	6	0	1
FANCA WILD-TYPE	72	86	84

Figure S2673. Get High-res Image Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FANCA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0037

Table S7096. Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FANCA MUTATED	1	0	6	0
FANCA WILD-TYPE	32	78	45	87

Figure S2674. Get High-res Image Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FANCA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.08

Table S7097. Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FANCA MUTATED	5	0	1	0	0
FANCA WILD-TYPE	60	59	41	34	57

Figure S2675. Get High-res Image Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FANCA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.064

Table S7098. Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FANCA MUTATED	1	0	0	2	0	0	3
FANCA WILD-TYPE	35	21	48	54	39	37	17

Figure S2676. Get High-res Image Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FANCA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00995 (Fisher's exact test), Q value = 0.051

Table S7099. Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FANCA MUTATED	7	0	0
FANCA WILD-TYPE	119	96	67

Figure S2677. Get High-res Image Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FANCA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00687 (Fisher's exact test), Q value = 0.041

Table S7100. Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FANCA MUTATED	5	2	0	0
FANCA WILD-TYPE	51	103	60	68

Figure S2678. Get High-res Image Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FANCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.51

Table S7101. Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
FANCA MUTATED	0	1	2	2	0	0
FANCA WILD-TYPE	34	17	57	36	19	43

'FANCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.41

Table S7102. Gene #723: 'FANCA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
FANCA MUTATED	3	0	2
FANCA WILD-TYPE	119	51	36

'CLIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.71

Table S7103. Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CLIP1 MUTATED	3	8	0	2	1
CLIP1 WILD-TYPE	76	118	27	41	11

'CLIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S7104. Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CLIP1 MUTATED	3	8	2	0
CLIP1 WILD-TYPE	68	68	32	63

Figure S2679. Get High-res Image Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.33

Table S7105. Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CLIP1 MUTATED	7	3	3
CLIP1 WILD-TYPE	71	83	82

'CLIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0264 (Fisher's exact test), Q value = 0.092

Table S7106. Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CLIP1 MUTATED	2	2	7	2
CLIP1 WILD-TYPE	31	76	44	85

Figure S2680. Get High-res Image Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CLIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.39

Table S7107. Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CLIP1 MUTATED	5	2	0	3	4
CLIP1 WILD-TYPE	60	57	42	31	53

'CLIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.054

Table S7108. Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CLIP1 MUTATED	0	0	2	1	5	2	4
CLIP1 WILD-TYPE	36	21	46	55	34	35	16

Figure S2681. Get High-res Image Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CLIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.52

Table S7109. Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CLIP1 MUTATED	9	3	3
CLIP1 WILD-TYPE	117	93	64

'CLIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.32

Table S7110. Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CLIP1 MUTATED	6	5	1	3
CLIP1 WILD-TYPE	50	100	59	65

'CLIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.81

Table S7111. Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CLIP1 MUTATED	3	0	3	3	0	2
CLIP1 WILD-TYPE	31	18	56	35	19	41

'CLIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.77

Table S7112. Gene #724: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CLIP1 MUTATED	6	2	3
CLIP1 WILD-TYPE	116	49	35

'ZNF217 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.56

Table S7113. Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
ZNF217 MUTATED	2	10	1	1	0
ZNF217 WILD-TYPE	77	116	26	42	12

'ZNF217 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.12

Table S7114. Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
ZNF217 MUTATED	2	7	1	0
ZNF217 WILD-TYPE	69	69	33	63

Figure S2682. Get High-res Image Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF217 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.15

Table S7115. Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
ZNF217 MUTATED	7	1	4
ZNF217 WILD-TYPE	71	85	81

'ZNF217 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00137 (Fisher's exact test), Q value = 0.016

Table S7116. Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
ZNF217 MUTATED	3	1	7	1
ZNF217 WILD-TYPE	30	77	44	86

Figure S2683. Get High-res Image Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF217 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.34

Table S7117. Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
ZNF217 MUTATED	6	1	3	2	1
ZNF217 WILD-TYPE	59	58	39	32	56

'ZNF217 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0232 (Fisher's exact test), Q value = 0.085

Table S7118. Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
ZNF217 MUTATED	1	0	0	5	2	1	4
ZNF217 WILD-TYPE	35	21	48	51	37	36	16

Figure S2684. Get High-res Image Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF217 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.0064

Table S7119. Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
ZNF217 MUTATED	13	0	1
ZNF217 WILD-TYPE	113	96	66

Figure S2685. Get High-res Image Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF217 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.063

Table S7120. Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
ZNF217 MUTATED	7	5	0	2
ZNF217 WILD-TYPE	49	100	60	66

Figure S2686. Get High-res Image Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF217 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.25

Table S7121. Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
ZNF217 MUTATED	1	2	3	4	0	0
ZNF217 WILD-TYPE	33	16	56	34	19	43

'ZNF217 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.063

Table S7122. Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
ZNF217 MUTATED	5	0	5
ZNF217 WILD-TYPE	117	51	33

Figure S2687. Get High-res Image Gene #725: 'ZNF217 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.58

Table S7123. Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
SLA MUTATED	0	4	0	0	0
SLA WILD-TYPE	79	122	27	43	12

'SLA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.11

Table S7124. Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
SLA MUTATED	0	4	0	0
SLA WILD-TYPE	71	72	34	63

Figure S2688. Get High-res Image Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.091

Table S7125. Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
SLA MUTATED	4	0	0	0	0
SLA WILD-TYPE	61	59	42	34	57

Figure S2689. Get High-res Image Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0876 (Fisher's exact test), Q value = 0.19

Table S7126. Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
SLA MUTATED	0	0	0	1	1	0	2
SLA WILD-TYPE	36	21	48	55	38	37	18

'SLA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.48

Table S7127. Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
SLA MUTATED	3	0	1
SLA WILD-TYPE	123	96	66

'SLA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00129 (Fisher's exact test), Q value = 0.015

Table S7128. Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
SLA MUTATED	4	0	0	0
SLA WILD-TYPE	52	105	60	68

Figure S2690. Get High-res Image Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.3

Table S7129. Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
SLA MUTATED	0	0	1	3	0	0
SLA WILD-TYPE	34	18	58	35	19	43

'SLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.31

Table S7130. Gene #726: 'SLA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
SLA MUTATED	2	0	2
SLA WILD-TYPE	120	51	36

'HDAC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.0094

Table S7131. Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
HDAC4 MUTATED	0	17	2	1	2
HDAC4 WILD-TYPE	79	109	25	42	10

Figure S2691. Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HDAC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S7132. Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
HDAC4 MUTATED	1	16	2	1
HDAC4 WILD-TYPE	70	60	32	62

Figure S2692. Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HDAC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0029

Table S7133. Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
HDAC4 MUTATED	15	1	4
HDAC4 WILD-TYPE	63	85	81

Figure S2693. Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HDAC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.0016

Table S7134. Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
HDAC4 MUTATED	4	3	12	1
HDAC4 WILD-TYPE	29	75	39	86

Figure S2694. Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0029

Table S7135. Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
HDAC4 MUTATED	11	0	3	4	0
HDAC4 WILD-TYPE	54	59	39	30	57

Figure S2695. Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HDAC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S7136. Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
HDAC4 MUTATED	1	0	0	3	6	0	8
HDAC4 WILD-TYPE	35	21	48	53	33	37	12

Figure S2696. Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 0.012

Table S7137. Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
HDAC4 MUTATED	18	2	2
HDAC4 WILD-TYPE	108	94	65

Figure S2697. Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S7138. Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
HDAC4 MUTATED	15	6	1	0
HDAC4 WILD-TYPE	41	99	59	68

Figure S2698. Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.34

Table S7139. Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
HDAC4 MUTATED	3	2	5	6	0	1
HDAC4 WILD-TYPE	31	16	54	32	19	42

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0057

Table S7140. Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
HDAC4 MUTATED	6	1	10
HDAC4 WILD-TYPE	116	50	28

Figure S2699. Get High-res Image Gene #727: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'AHI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.11

Table S7141. Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
AHI1 MUTATED	0	9	0	0	0
AHI1 WILD-TYPE	79	117	27	43	12

Figure S2700. Get High-res Image Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AHI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.45

Table S7142. Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
AHI1 MUTATED	1	5	1	1
AHI1 WILD-TYPE	70	71	33	62

'AHI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.051

Table S7143. Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
AHI1 MUTATED	6	0	2
AHI1 WILD-TYPE	72	86	83

Figure S2701. Get High-res Image Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'AHI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00448 (Fisher's exact test), Q value = 0.032

Table S7144. Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
AHI1 MUTATED	3	1	4	0
AHI1 WILD-TYPE	30	77	47	87

Figure S2702. Get High-res Image Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AHI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.1

Table S7145. Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
AHI1 MUTATED	5	0	1	2	0
AHI1 WILD-TYPE	60	59	41	32	57

Figure S2703. Get High-res Image Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AHI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.32

Table S7146. Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
AHI1 MUTATED	3	0	0	3	2	0	0
AHI1 WILD-TYPE	33	21	48	53	37	37	20

'AHI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0017 (Fisher's exact test), Q value = 0.018

Table S7147. Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
AHI1 MUTATED	9	0	0
AHI1 WILD-TYPE	117	96	67

Figure S2704. Get High-res Image Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AHI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.005

Table S7148. Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
AHI1 MUTATED	7	2	0	0
AHI1 WILD-TYPE	49	103	60	68

Figure S2705. Get High-res Image Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AHI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.14

Table S7149. Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
AHI1 MUTATED	1	2	5	0	0	0
AHI1 WILD-TYPE	33	16	54	38	19	43

'AHI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.24

Table S7150. Gene #728: 'AHI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
AHI1 MUTATED	5	0	3
AHI1 WILD-TYPE	117	51	35

'CLSTN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.46

Table S7151. Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
CLSTN1 MUTATED	1	8	0	1	0
CLSTN1 WILD-TYPE	78	118	27	42	12

'CLSTN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0347 (Fisher's exact test), Q value = 0.11

Table S7152. Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
CLSTN1 MUTATED	1	6	2	0
CLSTN1 WILD-TYPE	70	70	32	63

Figure S2706. Get High-res Image Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLSTN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.12

Table S7153. Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
CLSTN1 MUTATED	7	1	2
CLSTN1 WILD-TYPE	71	85	83

Figure S2707. Get High-res Image Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CLSTN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.29

Table S7154. Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
CLSTN1 MUTATED	1	2	5	2
CLSTN1 WILD-TYPE	32	76	46	85

'CLSTN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.35

Table S7155. Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
CLSTN1 MUTATED	6	1	1	1	1
CLSTN1 WILD-TYPE	59	58	41	33	56

'CLSTN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.54

Table S7156. Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
CLSTN1 MUTATED	2	1	0	2	2	1	2
CLSTN1 WILD-TYPE	34	20	48	54	37	36	18

'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.052

Table S7157. Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
CLSTN1 MUTATED	9	0	2
CLSTN1 WILD-TYPE	117	96	65

Figure S2708. Get High-res Image Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.047 (Fisher's exact test), Q value = 0.13

Table S7158. Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
CLSTN1 MUTATED	5	5	0	1
CLSTN1 WILD-TYPE	51	100	60	67

Figure S2709. Get High-res Image Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.45

Table S7159. Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
CLSTN1 MUTATED	2	0	4	3	0	0
CLSTN1 WILD-TYPE	32	18	55	35	19	43

'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.24

Table S7160. Gene #729: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
CLSTN1 MUTATED	6	0	3
CLSTN1 WILD-TYPE	116	51	35

'PPM1H MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S7161. Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PPM1H MUTATED	0	6	0	2	0
PPM1H WILD-TYPE	79	120	27	41	12

'PPM1H MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.53

Table S7162. Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PPM1H MUTATED	1	3	1	0
PPM1H WILD-TYPE	70	73	33	63

'PPM1H MUTATION STATUS' versus 'RPPA_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0029

Table S7163. Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PPM1H MUTATED	8	0	0
PPM1H WILD-TYPE	70	86	85

Figure S2710. Get High-res Image Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PPM1H MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S7164. Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PPM1H MUTATED	0	0	8	0
PPM1H WILD-TYPE	33	78	43	87

Figure S2711. Get High-res Image Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PPM1H MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.086 (Fisher's exact test), Q value = 0.19

Table S7165. Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PPM1H MUTATED	4	0	2	1	0
PPM1H WILD-TYPE	61	59	40	33	57

'PPM1H MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.1

Table S7166. Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PPM1H MUTATED	1	1	0	1	1	0	3
PPM1H WILD-TYPE	35	20	48	55	38	37	17

Figure S2712. Get High-res Image Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPM1H MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 0.094

Table S7167. Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PPM1H MUTATED	7	0	1
PPM1H WILD-TYPE	119	96	66

Figure S2713. Get High-res Image Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PPM1H MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 0.12

Table S7168. Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PPM1H MUTATED	4	4	0	0
PPM1H WILD-TYPE	52	101	60	68

Figure S2714. Get High-res Image Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PPM1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.25

Table S7169. Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PPM1H MUTATED	1	1	0	2	0	0
PPM1H WILD-TYPE	33	17	59	36	19	43

'PPM1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.12

Table S7170. Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PPM1H MUTATED	1	0	3
PPM1H WILD-TYPE	121	51	35

Figure S2715. Get High-res Image Gene #730: 'PPM1H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KYNU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.24

Table S7171. Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KYNU MUTATED	1	9	0	0	0
KYNU WILD-TYPE	78	117	27	43	12

'KYNU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.68

Table S7172. Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KYNU MUTATED	1	2	2	2
KYNU WILD-TYPE	70	74	32	61

'KYNU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.11

Table S7173. Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KYNU MUTATED	5	0	5
KYNU WILD-TYPE	73	86	80

Figure S2716. Get High-res Image Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KYNU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.39

Table S7174. Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KYNU MUTATED	2	4	3	1
KYNU WILD-TYPE	31	74	48	86

'KYNU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00731 (Fisher's exact test), Q value = 0.043

Table S7175. Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KYNU MUTATED	7	0	0	2	1
KYNU WILD-TYPE	58	59	42	32	56

Figure S2717. Get High-res Image Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KYNU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.07

Table S7176. Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KYNU MUTATED	2	1	0	0	3	1	3
KYNU WILD-TYPE	34	20	48	56	36	36	17

Figure S2718. Get High-res Image Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KYNU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.18

Table S7177. Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KYNU MUTATED	8	1	1
KYNU WILD-TYPE	118	95	66

'KYNU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0538 (Fisher's exact test), Q value = 0.14

Table S7178. Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KYNU MUTATED	5	4	0	1
KYNU WILD-TYPE	51	101	60	67

'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.66

Table S7179. Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KYNU MUTATED	2	0	3	1	0	0
KYNU WILD-TYPE	32	18	56	37	19	43

'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 0.55

Table S7180. Gene #731: 'KYNU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KYNU MUTATED	5	0	1
KYNU WILD-TYPE	117	51	37

'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.087

Table S7181. Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MLL4 MUTATED	1	16	2	2	1
MLL4 WILD-TYPE	78	110	25	41	11

Figure S2719. Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0027

Table S7182. Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MLL4 MUTATED	1	12	4	0
MLL4 WILD-TYPE	70	64	30	63

Figure S2720. Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.54

Table S7183. Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MLL4 MUTATED	9	6	5
MLL4 WILD-TYPE	69	80	80

'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0402 (Fisher's exact test), Q value = 0.12

Table S7184. Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MLL4 MUTATED	3	3	9	5
MLL4 WILD-TYPE	30	75	42	82

Figure S2721. Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00491 (Fisher's exact test), Q value = 0.033

Table S7185. Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MLL4 MUTATED	12	2	2	4	1
MLL4 WILD-TYPE	53	57	40	30	56

Figure S2722. Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0031

Table S7186. Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MLL4 MUTATED	2	1	0	5	4	1	8
MLL4 WILD-TYPE	34	20	48	51	35	36	12

Figure S2723. Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.003 (Fisher's exact test), Q value = 0.026

Table S7187. Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MLL4 MUTATED	18	3	2
MLL4 WILD-TYPE	108	93	65

Figure S2724. Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00095 (Fisher's exact test), Q value = 0.013

Table S7188. Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MLL4 MUTATED	12	7	1	3
MLL4 WILD-TYPE	44	98	59	65

Figure S2725. Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 0.57

Table S7189. Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MLL4 MUTATED	2	2	5	4	0	1
MLL4 WILD-TYPE	32	16	54	34	19	42

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.087

Table S7190. Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MLL4 MUTATED	9	0	5
MLL4 WILD-TYPE	113	51	33

Figure S2726. Get High-res Image Gene #732: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHKG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.067

Table S7191. Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
PHKG2 MUTATED	0	10	1	0	1
PHKG2 WILD-TYPE	79	116	26	43	11

Figure S2727. Get High-res Image Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PHKG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.012

Table S7192. Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
PHKG2 MUTATED	0	9	0	1
PHKG2 WILD-TYPE	71	67	34	62

Figure S2728. Get High-res Image Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHKG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.062

Table S7193. Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
PHKG2 MUTATED	7	1	1
PHKG2 WILD-TYPE	71	85	84

Figure S2729. Get High-res Image Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PHKG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00968 (Fisher's exact test), Q value = 0.05

Table S7194. Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
PHKG2 MUTATED	1	1	6	1
PHKG2 WILD-TYPE	32	77	45	86

Figure S2730. Get High-res Image Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHKG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.31

Table S7195. Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
PHKG2 MUTATED	5	2	1	2	0
PHKG2 WILD-TYPE	60	57	41	32	57

'PHKG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.3

Table S7196. Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
PHKG2 MUTATED	1	0	1	2	4	0	2
PHKG2 WILD-TYPE	35	21	47	54	35	37	18

'PHKG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.24

Table S7197. Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
PHKG2 MUTATED	9	2	1
PHKG2 WILD-TYPE	117	94	66

'PHKG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00074

Table S7198. Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
PHKG2 MUTATED	10	0	2	0
PHKG2 WILD-TYPE	46	105	58	68

Figure S2731. Get High-res Image Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PHKG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.94

Table S7199. Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
PHKG2 MUTATED	1	0	4	2	0	2
PHKG2 WILD-TYPE	33	18	55	36	19	41

'PHKG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.055

Table S7200. Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
PHKG2 MUTATED	2	2	5
PHKG2 WILD-TYPE	120	49	33

Figure S2732. Get High-res Image Gene #733: 'PHKG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OR4C16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.26

Table S7201. Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
OR4C16 MUTATED	2	8	3	0	0
OR4C16 WILD-TYPE	77	118	24	43	12

'OR4C16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.29

Table S7202. Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
OR4C16 MUTATED	1	6	1	1
OR4C16 WILD-TYPE	70	70	33	62

'OR4C16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 0.81

Table S7203. Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
OR4C16 MUTATED	3	3	5
OR4C16 WILD-TYPE	75	83	80

'OR4C16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.57

Table S7204. Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
OR4C16 MUTATED	1	4	4	2
OR4C16 WILD-TYPE	32	74	47	85

'OR4C16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00391 (Fisher's exact test), Q value = 0.03

Table S7205. Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
OR4C16 MUTATED	6	0	0	4	1
OR4C16 WILD-TYPE	59	59	42	30	56

Figure S2733. Get High-res Image Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OR4C16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0641 (Fisher's exact test), Q value = 0.16

Table S7206. Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
OR4C16 MUTATED	3	0	0	1	4	1	2
OR4C16 WILD-TYPE	33	21	48	55	35	36	18

'OR4C16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00768 (Fisher's exact test), Q value = 0.044

Table S7207. Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
OR4C16 MUTATED	11	2	0
OR4C16 WILD-TYPE	115	94	67

Figure S2734. Get High-res Image Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OR4C16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0327 (Fisher's exact test), Q value = 0.1

Table S7208. Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
OR4C16 MUTATED	4	8	1	0
OR4C16 WILD-TYPE	52	97	59	68

Figure S2735. Get High-res Image Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OR4C16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.29

Table S7209. Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
OR4C16 MUTATED	1	1	6	1	0	0
OR4C16 WILD-TYPE	33	17	53	37	19	43

'OR4C16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.56

Table S7210. Gene #734: 'OR4C16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
OR4C16 MUTATED	5	1	3
OR4C16 WILD-TYPE	117	50	35

'NUAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.6

Table S7211. Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
NUAK1 MUTATED	2	10	2	2	0
NUAK1 WILD-TYPE	77	116	25	41	12

'NUAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.092

Table S7212. Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
NUAK1 MUTATED	1	8	3	1
NUAK1 WILD-TYPE	70	68	31	62

Figure S2736. Get High-res Image Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NUAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.099

Table S7213. Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
NUAK1 MUTATED	9	3	2
NUAK1 WILD-TYPE	69	83	83

Figure S2737. Get High-res Image Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NUAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.003 (Fisher's exact test), Q value = 0.026

Table S7214. Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
NUAK1 MUTATED	4	1	7	2
NUAK1 WILD-TYPE	29	77	44	85

Figure S2738. Get High-res Image Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NUAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0592 (Fisher's exact test), Q value = 0.15

Table S7215. Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
NUAK1 MUTATED	9	2	2	1	1
NUAK1 WILD-TYPE	56	57	40	33	56

'NUAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.12

Table S7216. Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
NUAK1 MUTATED	4	1	0	4	3	0	3
NUAK1 WILD-TYPE	32	20	48	52	36	37	17

Figure S2739. Get High-res Image Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NUAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.26

Table S7217. Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
NUAK1 MUTATED	11	3	2
NUAK1 WILD-TYPE	115	93	65

'NUAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0645 (Fisher's exact test), Q value = 0.16

Table S7218. Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
NUAK1 MUTATED	7	6	2	1
NUAK1 WILD-TYPE	49	99	58	67

'NUAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 0.97

Table S7219. Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
NUAK1 MUTATED	2	1	3	3	0	2
NUAK1 WILD-TYPE	32	17	56	35	19	41

'NUAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 0.12

Table S7220. Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
NUAK1 MUTATED	7	0	4
NUAK1 WILD-TYPE	115	51	34

Figure S2740. Get High-res Image Gene #735: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM82A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.45

Table S7221. Gene #736: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
FAM82A1 MUTATED	0	3	1	0	0
FAM82A1 WILD-TYPE	79	123	26	43	12

'FAM82A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.51

Table S7222. Gene #736: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
FAM82A1 MUTATED	2	0	2
FAM82A1 WILD-TYPE	76	86	83

'FAM82A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.39

Table S7223. Gene #736: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
FAM82A1 MUTATED	0	3	1	0
FAM82A1 WILD-TYPE	33	75	50	87

'FAM82A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.28

Table S7224. Gene #736: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
FAM82A1 MUTATED	2	0	2	0	0
FAM82A1 WILD-TYPE	63	59	40	34	57

'FAM82A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.49

Table S7225. Gene #736: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
FAM82A1 MUTATED	1	0	0	2	0	0	1
FAM82A1 WILD-TYPE	35	21	48	54	39	37	19

'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.23

Table S7226. Gene #736: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
FAM82A1 MUTATED	4	0	0
FAM82A1 WILD-TYPE	122	96	67

'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 0.89

Table S7227. Gene #736: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
FAM82A1 MUTATED	1	2	0	1
FAM82A1 WILD-TYPE	55	103	60	67

'RASSF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.22

Table S7228. Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
RASSF5 MUTATED	0	2	2	0	0
RASSF5 WILD-TYPE	79	124	25	43	12

'RASSF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 0.16

Table S7229. Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
RASSF5 MUTATED	0	2	2	0
RASSF5 WILD-TYPE	71	74	32	63

'RASSF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00908 (Fisher's exact test), Q value = 0.049

Table S7230. Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
RASSF5 MUTATED	4	0	0
RASSF5 WILD-TYPE	74	86	85

Figure S2741. Get High-res Image Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RASSF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.073

Table S7231. Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
RASSF5 MUTATED	1	0	3	0
RASSF5 WILD-TYPE	32	78	48	87

Figure S2742. Get High-res Image Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RASSF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0993 (Fisher's exact test), Q value = 0.21

Table S7232. Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
RASSF5 MUTATED	3	0	0	0	0
RASSF5 WILD-TYPE	62	59	42	34	57

'RASSF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.34

Table S7233. Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
RASSF5 MUTATED	1	0	0	0	1	0	1
RASSF5 WILD-TYPE	35	21	48	56	38	37	19

'RASSF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.65

Table S7234. Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
RASSF5 MUTATED	3	1	0
RASSF5 WILD-TYPE	123	95	67

'RASSF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.43

Table S7235. Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
RASSF5 MUTATED	2	1	1	0
RASSF5 WILD-TYPE	54	104	59	68

'RASSF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.83

Table S7236. Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
RASSF5 MUTATED	0	1	1	1	0	1
RASSF5 WILD-TYPE	34	17	58	37	19	42

'RASSF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 0.87

Table S7237. Gene #737: 'RASSF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
RASSF5 MUTATED	2	1	1
RASSF5 WILD-TYPE	120	50	37

'MTMR11 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7238. Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
MTMR11 MUTATED	2	4	1	1	0
MTMR11 WILD-TYPE	77	122	26	42	12

'MTMR11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.37

Table S7239. Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
MTMR11 MUTATED	2	4	0	0
MTMR11 WILD-TYPE	69	72	34	63

'MTMR11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.32

Table S7240. Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
MTMR11 MUTATED	3	2	0
MTMR11 WILD-TYPE	75	84	85

'MTMR11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.27

Table S7241. Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
MTMR11 MUTATED	2	0	1	2
MTMR11 WILD-TYPE	31	78	50	85

'MTMR11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S7242. Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
MTMR11 MUTATED	2	2	2	1	1
MTMR11 WILD-TYPE	63	57	40	33	56

'MTMR11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.36

Table S7243. Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
MTMR11 MUTATED	2	0	0	4	2	0	0
MTMR11 WILD-TYPE	34	21	48	52	37	37	20

'MTMR11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S7244. Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
MTMR11 MUTATED	5	1	2
MTMR11 WILD-TYPE	121	95	65

'MTMR11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.31

Table S7245. Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
MTMR11 MUTATED	3	2	0	3
MTMR11 WILD-TYPE	53	103	60	65

'MTMR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.62

Table S7246. Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
MTMR11 MUTATED	2	1	2	1	0	0
MTMR11 WILD-TYPE	32	17	57	37	19	43

'MTMR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.07

Table S7247. Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
MTMR11 MUTATED	2	0	4
MTMR11 WILD-TYPE	120	51	34

Figure S2743. Get High-res Image Gene #738: 'MTMR11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KRT222 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.5

Table S7248. Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	79	126	27	43	12
KRT222 MUTATED	1	3	0	0	1
KRT222 WILD-TYPE	78	123	27	43	11

'KRT222 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 0.91

Table S7249. Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	71	76	34	63
KRT222 MUTATED	1	2	0	0
KRT222 WILD-TYPE	70	74	34	63

'KRT222 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.18

Table S7250. Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	78	86	85
KRT222 MUTATED	3	0	1
KRT222 WILD-TYPE	75	86	84

'KRT222 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.37

Table S7251. Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	33	78	51	87
KRT222 MUTATED	0	2	2	0
KRT222 WILD-TYPE	33	76	49	87

'KRT222 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.77

Table S7252. Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	65	59	42	34	57
KRT222 MUTATED	2	0	1	0	1
KRT222 WILD-TYPE	63	59	41	34	56

'KRT222 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 0.17

Table S7253. Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	36	21	48	56	39	37	20
KRT222 MUTATED	0	0	0	4	0	0	0
KRT222 WILD-TYPE	36	21	48	52	39	37	20

'KRT222 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.32

Table S7254. Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	126	96	67
KRT222 MUTATED	4	0	1
KRT222 WILD-TYPE	122	96	66

'KRT222 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.25

Table S7255. Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	56	105	60	68
KRT222 MUTATED	3	1	0	1
KRT222 WILD-TYPE	53	104	60	67

'KRT222 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 0.92

Table S7256. Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	34	18	59	38	19	43
KRT222 MUTATED	1	0	1	1	0	0
KRT222 WILD-TYPE	33	18	58	37	19	43

'KRT222 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.66

Table S7257. Gene #739: 'KRT222 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	122	51	38
KRT222 MUTATED	2	0	1
KRT222 WILD-TYPE	120	51	37

Methods & Data

Input

Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline
Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STAD-TP/15197121/transformed.cor.cli.txt
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STAD-TP/15114286/STAD-TP.transferedmergedcluster.txt
Number of patients = 289
Number of significantly mutated genes = 739
Number of Molecular subtypes = 10
Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References

[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)

[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)

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