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The Melanocortin 1 Receptor Gene Variations in Some Bali Cattle with Color Pattern Deviations

JAHP_11_3_234-241

Research Article

The Melanocortin 1 Receptor Gene Variations in Some Bali Cattle with Color Pattern Deviations

Ni Putu Sarini1*, I Gde Suranjaya1, I Gusti Agung Arta Putra1, I Wayan Suarna1, Lindawati Doloksaribu1, I Ketut Puja2, I Ketut Gde Natakesuma3, I Gusti Ngurah Bagus Rai Mulyawan4

1Faculty of Animal Husbandry, Udayana University, Bali, Indonesia, 80361; 2Veterinary Genetics and Reproduction Technology Laboratory, Faculty of Veterinary Medicine, Udayana University, Bali, Indonesia,80361; 3Animal Health and Livestock Service, Bali Province, Bali, Indonesia, 3038; 4Animal Health and Livestock Services, District of Jembrana, Bali, Indonesia,82218.

Abstract | Coat color or pattern uniformity is one of the obvious outermost characteristics representing the quality of livestock breeds. Bali cattle have well known for their coat color or pattern uniformity standard and yet there are still found some irregularities in albino, injin, gading, bang, poleng, mores, panjut, and cundang. The MC1R (Melanocortin 1 Receptor) gene plays an important role in the pigmentation process and its variations are associated with differences in the skin and coat colors. The purpose of this study was to analyze the genetic variations of the MC1R gene in 10 Bali cattle reared in Bali Province which have aberrant color patterns. Blood samples were taken from the 10 Bali cattle consisting of three having normal coat color patterns, three albino, two injin, and two poleng. The blood samples were extracted using a commercial kit and the MC1R gene was then amplified by using a forward primer 5’ AGT TGA GCA GGA CCC TGA GA 3’, and a reverse primer 5’ CCA GTC ACC ACA GAG CGT TA 3’. The PCR products were further sequenced and analyzed to see variations of the MC1R gene of all cattle. The results indicated that the sequence of MC1R gene in the 10 Bali cattle has a nucleotide variation of 0.31% generated from Bos taurus and 0.21% generated from Bos indicus. While the nucleotide variation of the MC1R gene from cattle with color pattern deviations to the Bali cattle, namely 1.36% albino, 0.21% injin, and 0.10% poleng Bali cattle.

 

Keywords | Albino, Bali cattle, Color pattern, Injin, MC1R gene, Poleng


Received | November 03, 2022; Accepted | April 25, 2023; Published | June 20, 2023

*Correspondence | Ni Putu Sarini, Faculty of Animal Husbandry, Udayana University, Bali, Indonesia, 80361; Email: putusarini@unud.ac.id

Citation | Sarini NP, Suranjaya IG, Putra IGAA, Suarna IW, Doloksaribu L, Puja IK, Natakesuma IKG, Mulyawan IGNBR (2023). The melanocortin 1 receptor gene variations in some bali cattle with color pattern deviations. J. Anim. Health Prod. 11(3): 234-241.

DOI | http://dx.doi.org/10.17582/journal.jahp/2023/11.3.234.241

ISSN | 2308-2801

 

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Copyright: 2023 by the authors. Licensee ResearchersLinks Ltd, England, UK.

This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).



INTRODUCTION

These Bali cattle are one of the cattle that play an important role in livestock development in Indonesia. Currently, Bali cattle breeding programs are based on performance and pedigree information without knowing the genes that affect performance (Puja et al., 2018). No other cattle breeds are allowed reared in Bali Province. Furthermore, Bali cattle are regulated as national livestock germplasm, and its biodiversity in Bali Province needs to be preserved through sustainable pure breeding activities meeting the quality standards based on their genetic potential. Thus, Bali cattle as a preference of meat producers for national consumption must be maintained for their pureness.

The appearance of Bali cattle is easily distinguished from other local cattle breeds reared in Indonesia. Their color is also unique, both females and males from their birth up to their prior sexual maturity are in brick (terracotta) color. While the females are remaining in brick color although they reach their sexual maturity, the sexual maturity males on the other hand turn to be black. When young males are castrated, their color remains brick, however, when sexually mature males are castrated their black coat color turn to be brick again (Oka, 1995).

In addition to these characteristics, Bali cattle also have other distinctive characteristics, namely the black line that extends like an eel from the back of the neck to the base of the tail. Their legs, starting from the top ruffled to the knees are white, have a white mirror on the rump and the tip of the tail is black. However, the Bali cattle breeding and development that occurred in Bali Province in many cases delivered calves with color deviations. Some of their color deviations namely albino (the whole body coat is white color), injin (the whole body coat is black color), the whole body coat is gading color, the whole body coat is bang color, poleng (the whole body coat is white and gading), mores (the whole body coat has white spots), panjut (the tip of the tail is white color where supposed to be black color), and cundang (white triangle shape on the forehead) (Hardjosubroto, 1994) (Figure 1).

 

The process of coloring coat color (melanogenesis) is determined by the pigment melanin which is found in the melanosomes of melanocytes. Melanins can be produced in two chemically distinct types eumelanin and pheomelanin (Song et al., 2019). Eumelanin is responsible for the black-to-brown pigmentation of the skin and coat color, while pheomelanin is responsible for the red-to-yellow coloring in the coat color of mammals. Eumelanin production depends on the stimulation of a G-protein coupled receptor called the melanocyte-specific melanocortin receptor (MC1R) by agonists of α-melanocyte-stimulating hormone (α-MSH) (Herraiz et al., 2021). The pigmentation of fur in livestock is determined by the relative distribution of pheomelanin and eumelanin pigments. Pigmentation is influenced by genetic factors, environment, and endocrine modulating the amount, type, and distribution of melanin within the skin (Hearing and Tsukamoto, 1991; Slominski et al. 2018; Jablonski, 2021). Both of these pigments are expressed by melanocyte cells through the mechanism of melanogenesis (Jung et al., 2020). The expression of pigment produced by melanocytes is controlled by the melanocortin 1 receptor and alleles of the agouti locus (Jung et al., 2021). The synthetic shift of eumelanin to pheomelanin is linked to a mutation in the MC1R gene that results in a change in coat color.

Abnormal changes or mutations in the MC1R gene have been shown to affect coat color in a large number of mammals, including cattle (Klungland et al., 1995; Girardot et al., 2006). This gene is widely used to determine the variation in several different color patterns. Research on five breeds of cattle reared in Italy showed high variations in the MC1R gene (Crepaldi et al., 2005). Meanwhile, in some cattle reared in Indonesia, more variations were found in cross-bred cattle compared to the other Indonesian local cattle (Hartatik, 2016), including Bali cattle reared in Kupang in NTT Province (Tabun et al., 2013; Tabun et al., 2014). However, until recently, there has been no evidence of this gene variation/diversity in Bali cattle with aberrations in color patterns that exist in Bali Province.

Therefore, the objective of this study was to find out the sequence variation/diversity of the MC1R gene in Bali cattle with color pattern aberrations that exist in Bali Province. The information gained in this study is expected to be used as a marker in selecting bulls for semen resources for artificial insemination purposes to ensure that Bali cattle reared in Bali Province have more uniform coat colors thus minimizing the coat color aberrations occurred.

MATERIALS AND METHODS

Blood Sampling and DNA Isolation

Blood samples were collected from 10 Bali cattle reared in Bali Province. Those cattle consisted of 3 Bali cattle having normal color, 3 Bali cattle having albino, 2 Bali cattle having poleng, and 2 Bali cattle having injin colors. EDTA-containing vacutainers were used to collect their blood through jugular veins. Genomic DNA was extracted using readymade Qiagen DNeasy blood and tissue DNA extraction kit (Qiagen, Hilden, Germany) following the manufacturer’s instructions. DNA concentration was determined by spectrophotometer (Nanophotometer, Implan, Germany). Then, the DNA was put into a 1.5 ml tube and stored at -20 0C for further processing. The study was approved by the Animal Ethics Committee, Faculty of Veterinary Medicine Udayana University.

Amplifying MC1R Gene and Sequencing

DNA amplification used a forward primer 5’ AGT TGA GCA GGA CCC TGA GA 3’, and a reverse primer 5’ CCA GTC ACC ACA GAG CGT TA 3’. Both primers were designed based on Design Program Primer 3 method by Triinu Koressaar and Maido Remm (2007). The DNA amplification process was carried out with a total volume of 20 µl consisting of 5 µl DNA, 10 µl HotStar Taq plus master mix, 1 µl forward primer, 1 µl reverse primer, and 3 µl RNase free water. Amplification of specific DNA fragments in the MC1R gene of 954 bp using a Thermal Cycler machine (Senquest – Labcycler-Germany) with pre-denaturation conditions of 95 0C for 5 minutes, denaturation of 940C for 30 seconds, annealing of 57 0C for 30 seconds and extension at 72 0C for 30 seconds, repeated for 30 seconds as many as 30 cycles, and the final extension at a temperature of 72 0C for 10 minutes. After that, the DNA was visualized through electrophoresis on 1.2% agarose gel in 1x TBE solution. The fragments were stained with ethidium bromide after being migrated for 40 minutes at a voltage of 85 V. Stained DNA fragments were then viewed under an ultraviolet illumination chamber (UVITEC-Cambridge). The MC1R gene PCR product was then sent to Macrogen Inc., Singapore for sequencing.

Data Analysis

The results of the sequences then were analyzed using Mega version X software (Kumar et al., 2018), so that variations or polymorphisms of the MC1R gene in all samples are known.

RESULTS AND DISCUSSIONS

The amplification results of the MC1R gene of all samples showed that the primer pair amplified the DNA fragment by 954 base pairs (bp). The DNA fragment recognized by the primer flank the nucleotide sequence at 233 to 1187 bp from GenBank with accession number NM_174108.2. Multiple alignments (Multi Alignment ClustalW) of bovine MC1R gene sequences was carried out, then it was analyzed for its nucleotide diversity after that amino acid composition was compared to sequences of other from GenBank, namely Bos taurus (NM_174108.2), and Bos indicus (MG373644.1). Results of the present study revealed several polymorphisms in Bali cattle with Bos taurus and Bos indicus showed in Figure 1.

Identification of polymorphism/variation from all samples (Bali cattle, albino, injin, and poleng) and MC1R gene sequences found 3 SNPs with nucleotide changes compared to Bos taurus MC1R gene from GenBank, whereas Bali cattle when compared with Bos indicus MC1R gene sequences found 2 SNPs. The nucleotides that changed were p201 C>T, p296 C>T, p876 T>C. Variations or nucleotide diversity of all samples to other cattle from GenBank were presented in Table 1.

The alignment results of all sequences showed that there were 13 polymorphisms found in albino Bali cattle, 2 polymorphisms in injin Bali cattle, and 1 polymorphism in poleng Bali cattle (Table 1).

 

Table 1: Nucleotide similarity of MC1R gene of Bali cattle and other breeds.

 

Length

(bp)

Total

Nucleotide diversity

Nucleotide Similarity

 

Bali cattle vs Bos taurus

954 3 (0.31%) 951 (99.69%)

Bali cattle vs Bos indicus

954 2 (0.21%)

952

(99.79%)

Albino vs brick Bali cattle 954 13 (1.36%)

941

(98.54%)

Injin vs brick Bali cattle 954 2 (0.21%)

952

(99.79%)

Poleng vs brick Bali cattle 954 1 (0.10%)

953

(99.90%)

 

The nucleotide changes that occurred in albino Bali cattle of a total of 13 nucleotides, 8 of them caused changes in amino acids. In injin Bali cattle, on the other hand, both two nucleotide changes caused amino acid changes. Differing from the Poleng Bali cattle, the nucleotide changes did not cause amino acid changes. The results of multiple alignments of MC1R gene sequences (954 bp) for Bali cattle, albino Bali cattle, injin Bali cattle and Bali poleng cattle with standard sequences from the NCBI GenBank can be seen in Figure 2.

The synthesis of melanin is determined by the complex regulation of various aspects, one of which was the melanocortin 1 receptor (MC1R) gene. The normal pigmentation process run as it should, of course, if the MC1R gene has the right sequence. Changes in the nucleotide base content of a gene cause variations in the expression of the gene concerned (Huang et al., 2002), where one of the causes of this change could be due to mutation (Agisimanto and Supriyanto, 2007).

The results of the present study indicated that Bali cattle, both those that have normal color patterns and those that deviate by looking at their MC1R gene sequence were still in the same group with Bos taurus and Bos indicus breeds with 99.69% and 99.79% nucleotide similarities, respectively (Table 2). This finding was also similar to the study found by Tabun et al. (2014), which used Bali cattle with brick color, injin, and albino in Kupang Province. This showed that although Bali cattle were generated from Bos javanicus (banteng) from the view of the color pattern construction, they also had high similarity with Bos taurus and Bos indicus.

 

CLUSTAL O(1.2.4) multiple sequence alignment

 

NM_174108.2 ATGCCTGCACTTGGCTCCCAGAGGCGGCTGCTGGGTTCCCTTAACTGCACGCCCCCAGCC 60

MG373644.1 ATGCCTGCACTTGGCTCCCAGAGGCGGCTGCTGGGTTCCCTTAACTGCACGCCCCCAGCC 60

Bali_70 ............................................................ 60

BALI_ALBINO ....................A...T..........C..................G..... 60

BALI_INJIN3 .....................................T................G..... 60

Bali_poleng ............................................................ 60

********************.*** ********** * **************** *****

 

NM_174108.2 ACCCTCCCCTTCACCCTGGCCCCCAACCGGACGGGGCCCCAGTGCCTGGAGGTGTCCATC 120

MG373644.1 ACCCTCCCCTTCACCCTGGCCCCCAACCGGACGGGGCCCCAGTGCCTGGAGGTGTCCATC 120

Bali_70 ............................................................ 120

BALI_ALBINO ........................................G.G..............T.. 120

BALI_INJIN3 ............................................................ 120

Bali_poleng ............................................................ 120

****************************************.* **************:**

 

NM_174108.2 CCTGACGGGCTCTTTCTCAGCCTGGGGCTGGTGAGTCTCGTGGAGAACGTGCTGGTAGTG 180

MG373644.1 CCTGACGGGCTCTTTCTCAGCCTGGGGCTGGTGAGTCTCGTGGAGAACGTGCTGGTAGTG 180

Bali_70 ............................................................ 180

BALI_ALBINO ...................C........................................ 180

BALI_INJIN3 ............................................................ 180

Bali_poleng ............................................................ 180

******************* ****************************************

 

NM_174108.2 GCTGCCATTGCCAAGAACCGCAACCTGCACTCCCCCATGTACTACTTTATCTGCTGCCTG 240

MG373644.1 GCTGCCATTGCCAAGAACCGCAACCTGCACTCCCCCATGTACTACTTTATCTGCTGCCTG 240

Bali_70 ....................T....................................... 240

BALI_ALBINO A...................T....................................... 240

BALI_INJIN3 ....................T....................................... 240

Bali_poleng ....................T....................................... 240

.******************* ***************************************

 

NM_174108.2 GCTGTGTCTGACTTGCTGGTGAGCGTCAGCAACGTGCTGGAGACGGCAGTCATGCCGCTG 300

MG373644.1 GCTGTGTCTGACTTGCTGGTGAGCGTCAGCAACGTGCTGGAGACGGCAGTCATGCTGCTG 300

Bali_70 .......................................................T.... 300

BALI_ALBINO ..............................................T........T.... 300

BALI_INJIN3 .......................................................T.... 300

Bali_poleng .......................................................T.... 300

********************************************** ********.****

 

NM_174108.2 CTGGAGGCCGGTGTCCTGGCCACCCAGGCGGCCGTGGTGCAGCAGCTGGACAATGTCATC 360

MG373644.1 CTGGAGGCCGGTGTCCTGGCCACCCAGGCGGCCGTGGTGCAGCAGCTGGACAATGTCATC 360

Bali_70 ............................................................ 360

BALI_ALBINO ............................................................ 360

BALI_INJIN3 ............................................................ 360

Bali_poleng ............................................................ 360

************************************************************

 

 

NM_174108.2 GACGTGCTCATCTGCGGATCCATGGTGTCCAGCCTCTGCTTCCTGGGTGCCATTGCTGTG 420

MG373644.1 GACGTGCTCATCTGCGGATCCATGGTGTCCAGCCTCTGCTTCCTGGGTGCCATTGCTGTG 420

Bali_70 ............................................................ 420

BALI_ALBINO ...................A...........A............................ 420

BALI_INJIN3 ............................................................ 420

Bali_poleng ...............................A............................ 420

*******************.***********.****************************

 

NM_174108.2 GACCGCTACATCTCCATCTTCTACGCCCTGCGGTACCACAGTGTTGTGACACTGCCCCGA 480

MG373644.1 GACCGCTACATCTCCATCTTCTACGCCCTGCGGTACCACAGTGTTGTGACACTGCCCCGA 480

Bali_70 ............................................................ 480

BALI_ALBINO ..........................................................A. 480

BALI_INJIN3 ............................................................ 480

Bali_poleng ............................................................ 480

**********************************************************.*

NM_174108.2 GCGTGGAGGATCATTGCGGCCATCTGGGTGGCCAGCATCCTCACCAGCCTGCTCTTCATC 540

MG373644.1 GCGTGGAGGATCATTGCGGCCATCTGGGTGGCCAGCATCCTCACCAGCCTGCTCTTCATC 540

Bali_70 ............................................................ 540

BALI_ALBINO ............................................................ 540

BALI_INJIN3 ............................................................ 540

Bali_poleng ............................................................ 540

************************************************************

 

NM_174108.2 ACCTACTACAACCACAAGGTCATCCTGCTGTGCCTCGTTGGCCTCTTCATAGCTATGCTG 600

MG373644.1 ACCTACTACAACCACAAGGTCATCCTGCTGTGCCTCGTTGGCTTCTTCATAGCTATGCTG 600

Bali_70 ............................................................ 600

BALI_ALBINO ............................................................ 600

BALI_INJIN3 ............................................................ 600

Bali_poleng ............................................................ 600

************************************************************

 

NM_174108.2 GCCCTGATGGCCGTCCTCTACGTCCACATGCTGGCCCGGGCCTGCCAGCATGCCCGGGGC 660

MG373644.1 GCCCTGATGGCCGTCCTCTACGTCCACATGCTGGCCCGGGCCTGCCAGCATGCCCGGGGC 660

Bali_70 ............................................................ 660

BALI_ALBINO ............................................................ 660

BALI_INJIN3 ............................................................ 660

Bali_poleng ............................................................ 660

************************************************************

 

 

NM_174108.2 ATTGCCCGGCTCCAGAAGAGGCAGCGCCCCATTCATCAGGGCTTTGGCCTCAAGGGCGCT 720

MG373644.1 ATCGCCCGGCTCCAGAAGAGGCAGCGCCCCATTCATCAGGGCTTTGGCCTCAAGGGCGCT 720

Bali_70 ............................................................ 720

BALI_ALBINO ............................................................ 720

BALI_INJIN3 ............................................................ 720

Bali_poleng ............................................................ 720

************************************************************

 

NM_174108.2 GCCAACCTCACCATCCTGCTGGGCGTCTTCTTCCTCTGCTGGGGCCCCTTCTTCCTGCAC 780

MG373644.1 GCCACCCTCACCATCCTGCTGGGCGTCTTCTTCCTCTGCTGGGGCCCCTTCTTCCTGCAC 780

Bali_70 ............................................................ 780

BALI_ALBINO ............................................................ 780

BALI_INJIN3 ............................................................ 780

Bali_poleng ............................................................ 780

************************************************************

 

NM_174108.2 CTCTCGCTCATCGTCCTCTGCCCCCAGCACCCCACCTGTGGCTGCATCTTCAAGAACTTC 840

MG373644.1 CTCTCGCTCATCGTCCTCTGCCCCCAGCACCCCACCTGTGGCTGCATCTTCAAGAACTTC 840

Bali_70 ............................................................ 840

BALI_ALBINO ............................................................ 840

BALI_INJIN3 ............................................................ 840

Bali_poleng ............................................................ 840

************************************************************

 

NM_174108.2 AACCTCTTCCTGGCCCTCATCATTTGCAACGCCATTGTGGACCCCCTCATCTATGCCTTC 900

MG373644.1 AACCTCTTCCTGGCCCTCATCATTTGCAACGCCATTGTGGACCCCCTCATCTATGCCTTC 900

Bali_70 ...................................C........................ 900

BALI_ALBINO ...................................C........................ 900

BALI_INJIN3 ...................................C........................ 900

Bali_poleng ...................................C........................ 900

*********************************** ************************

 

NM_174108.2 CGCAGCCAGGAGCTCCGGAAGACGCTCCAAGAGGTGCTGCAGTGCTCCTGGTGA 954

MG373644.1 CGCAGCCAGGAGCTCCGGAAGACGCTCCAAGAGGTGCTGCAGTGCTCCTGGTGA 954

Bali_70 ...................................................... 954

BALI_ALBINO ...................................................... 954

BALI_INJIN3 ...................................................... 954

Bali_poleng ...................................................... 954

******************************************************

 

 

……………. = similar to the line above

NM_174108.2 = MC1R genbank code of Bos Taurus

MG373644.1 = MC1R genbank code of Bos Indicus

Figure 2: The results of multiple alignments of the MC1R gene sequence (954 bp) in Bali cattle, albino bali cattle, injin bali cattle and poleng bali cattle with sequences standards from GenBank NCBI

The diversity of color pattern aberrations to Bali cattle was 1.36%, 0.21%, and 0.10% for the albino, injin, and poleng Bali cattle, respectively. There was no other similar study was carried out to this study in Indonesia. Tabun et al.. (2014), however, conducted a slightly different study in Kupang Province, in that study albino and injin cattle sequences were compared to the sequence of the breed from the gene bank instead of Bali cattle with brick color. In addition, they also observed a shorter sequence (296bp) than to the present study 954 bp.

The number of nucleotide variations of the MC1R gene

 

Table 2: Nucleotide Variations and Amino Acid Changes by MC1R Gene of Bali Cattle with Color Deviations

Cattle

Nucleotide

variations

Amino

acid

variations

Albino

p21G>A p25C>T p36 T>C p55C>G p101A>G p103T>G p118A>T p140G>C p181G>A p287C>T p386C>A p392G>A p479G>A

Valin7Valin Alanin9Treonin Prolin12Prolin Glisin19Arginin Valin34Alanin Treonin35Prolin Lisin40Lisin Serin47Triptofan Arginin61Tirosin Arginin96Histidin Isoleusin127Isoleusin Serin131Serin Alanin160Valin

Injin

p38C>T p55C>G

Arginin13Lisin Glisin19Arginin

Poleng p392G>A

Serin13Serin

 

sequence in the three Bali cattle that had color pattern deviations in the present study was 13, 2, and 1 for albino Bali cattle, injin Bali cattle, and poleng Bali cattle, respectively, from the brick color pattern of Bali cattle (Table 2). Mutations in the MC1R gene caused the function of the MC1R gene and it is associated with an increase or lower in the two types of melanin (Eumelanin and pheomelanin) productions which resulted in color changes (Wolf Horrell et al., 2016). Of all the mutations that occurred in the samples, however, there was not a single specific mutation that could be associated with the color of a particular sample. In albino Bali cattle, changes occurred in the four nucleotides, namely A, T, G, and C. In Bali Injin cattle, however, two nucleotides changed from C to T, and G, and in Poleng cattle, the nucleotides G became A. No previous studies have found the same variation as this study. According to Garcia-Borron et al. (2005), nucleotide C was important in the formation of black pigment so changes in the nucleotide C caused lighter colors. In line with Klungland et al. (1995) who also reported that nucleotide changes T296C were responsible for the black color of Angus cattle. In the recent study, only the sequence of Bos taurus from the Gen Bank (code NM_174108.2) has nucleotide C, the rest sequences Bos indicus (MG373644.1), Bali cattle, albino, injin, and poleng was nucleotide T instead (Figure 3). In contrast to Klungland et al. (1995), Garcia-Borron et al. (2005), and Tabun et al.(2014), this study found changes of nucleotide C to T in injin Bali cattle do not make the color lighter, it was black from birth. This was probably due to nucleotide C changing to G as well and this situation kept the formation of black color. Differ from albino and injin cattle, poleng cattle have only 1 nucleotide change was G to A, and this does not give rise to amino acid change (Serine to Serine), it can be said that these cattle have similar protein as normal Bali cattle. Further study on the nutrition and health status of these cattle was necessary to get a better understanding of this color emergence. Meanwhile, the albino Bali cattle had 13 nucleotides which were differ from the normal Bali cattle have the four nucleotides changed, from the results of this study it could not be said which of the nucleotides changes caused a change in the formation of a dark color (black) to a light color or albino. It was probably due to the small sample used in this study and in addition, there was no association found between certain mutations to specific color deviation occurred.

 

Other than nucleotide changes, color changes occurred also dictated by the location of the amino acid changes on the MC1R gene protein structures. These receptors were categorized into G- Protein Coupled Receptor (GPCR) group. MC1R was part of the integral membrane made up of the 317 amino acid residues (Figure 3) with the specific structure of GPCR such as N-extra cell terminals, three extracellular loops (els), seven trans-membrane (TM) fragments, three intracellular loops and C-intra cell terminals (Ringholm et al., 2004).

The changes in amino acids in the 10 Bali cattle in the present study occurred on N-terminal, transmembrane 1, 2, dan 3 (albino), N-terminal (injin). N-terminal caught peptide signals from free protein. The only effect was the amino acid residues after the number 27. Amino acid changes from Ser to Ala in that region were reported to cause significant decreases in the affinity of the receptor (Chhajlani et al., 1996). On the transmembrane fragment, 11 natural mutations cluster in TM2 of the MC1R (Figure 3) and several of them had important functional consequences. Changes in amino acids on the 10 Bali cattle in the present study were not found in the critical position mentioned in the previous structures i.e., N-terminal and transmembrane fragments. Further study with a large sample will allow determining which SNPs affected the certain phenotype. That would make it possible to identify the phenotypic variations, to help in selecting the most important for association study.

CONCLUSION

Results of the present study showed that MC1R gene of albino, injin and poleng Bali cattle had variant sequences or different nucleotide orders from Bali cattle reared in Bali Province. The proportion of the variant sequences of MC1R gene of albino, injin, and poleng Bali cattle was 1.36%, 0.21%, and 0.10%, respectively. No specific nucleotide changes were found to be associated with any color abnormality in Bali cattle.

ACKNOWLEDGEMENTs

The authors would like to thank the Directorate General of Higher Education, Ministry of Education and Culture of Indonesia, for the research grant with contract letter number: B/96- 260/UN14.4.A/PT.01.05/2021 and the Animal Health and Livestock Services, Bali Province, and the Animal Health and Livestock Services, District of Jembrana for their help to obtain blood samples of Bali cattle with color pattern deviations.

CONFLICT OF INTEREST

We certify that there is no conflict of interest with any financial, personal, or other relationships with other people or organizations related to the material discussed in the manuscript.

NOVELTY STATEMENT

This research demonstrated that there was a difference in the MC1R gene sequence in Bali cattle with color deviation.

AUTHORS CONTRIBUTION

Ni Putu Sarini, I Wayan Suarna, I Gusti Agung Arta Putra, I Ketut Puja, Lindawati Doloksaribu designed the experiments, executed them, and wrote the manuscript. I Gde Suranjaya, I Ketut Gde Natakusuma, I Gusti Ngurah Bagus Rai Mulyawan assisted in collecting data and analysis. All authors read and approved the final version of the manuscript.

REFERENCES

Agisimanto D, Supriyanto A (2007). Genetic diversity of Indonesian pamelo based on Random Amplified Polymorphic DNA Primer. J. Hort. 17(1): 1-7. Https://doi.org/10.21082/jhort.v17n1.2007.p%p.

Chhajlani V, Xu X, Blauw J, Sudarshi S (1996). Identification of ligand binding residues in extracellular loops of the melanocortin 1 receptor. Biochem Biophys Res. Commun. 219, 521–525. Https://doi.org/10.1006/bbrc.1996.0266.

Crepaldi P, Fornarelli F, Marilli MM (2005). MC1R gene: comparison between different farm animal species. Italian J of Anim Sci. 4(2): 43-45. https://agris.fao.org/agris-search/search.do?recordID=IT2006601262.

Garcia-Borron JC, Sanchez-Laorden BL, Jimenez-Cervantes C (2005). Melanocortin-1 structure and functional regulation. Pigment Cell Res. 18:393-410. Https://doi.org/10.1111/j.1600-0749.2005.00278.x.

Girardot M, Guibert S, Laforet MP, Gallard Y, Larroque H (2006). The insertion of a full-length Bos taurus line element is responsible for a transcriptional deregulation of the Normande Agouti gene. Pigment Cell Res. 19:346-355. https://doi.org/10.1111/j.1600-0749.2006.00312.x.

Hardjosubroto W (1994). Aplikasi Pemuliaan Ternak di Lapangan. Jakarta : PT. Grasindo.

Herraiz H, Martínez-Vicente I, Maresca V (2021). The a-melanocyte-stimulating hormone/melanocortin-1 receptor interaction:A driver of pleiotropic effects beyond pigmentation. Pigment Cell Melanoma Res. 34 (4): 748–761. https://doi.org/10.1111/pcmr.12980

Hartatik T (2016). Sequence analysis and identification of allele distribution of melanocortin 1 receptor (MC1R) gene in Indonesian cattle (Bos sondaicus x Bos indicus). Asian J. Anim Sci. http://knowledgiascientific.com.

Hearing VJ, Tsukamoto K (991). Enzimatic control of pigmentation in mammals. FASEB J. 5:2902-2909. http://doi.org/10.1096/fasebj.5.141752358.

Huang DH, Chang YL, Yang CC, Pan IC, King B (2002). Pipsqueak encodes a factor essential for sequence-specific targeting of a polycomb group protein complex. Mol. Cell. Biol. 22(17): 6261--6271. Https://doi.org/10.1128/MCB.22.17.6261-6271.2002.

Jablonski NG (2021). The Evolution of Human Skin Pigmentation Involved the Interactions of Genetic, Environmental, and Cultural Variables. Pigment Cell Melanoma Res. 34:707–29. https://doi.org/10.1111/pcmr.12976 4.

Jung KS, Kim SH, Yoon JT (2020). Differential methylation of melanin-related epigenetic genes during brindle cattle growth. J. Anim. Health Prod. 8(2): 80-88. http://dx.doi.org/10.17582/journal.jahp/2020/8.2.80.88

Jung KS, Choi YD, Kim SH (2021). Differences in melanogenesis-related gene expression between korean brindle cattle and Korean native cattle for coat color decisions. J. Anim. Health Prod. 9(3): 321-330. http://dx.doi.org/10.17582/journal.jahp/2021/9.3.321.330

Klungland H, Vage DI, Gomez-Raya L, Adalsteinsson S, Lien S (1995). The role of melanocyte-stimulating hormone (MSH) receptor in bovine coat color determination. Mammalian Genome. 6:636. Https://doi.org/10.1007/BF00352371.

Kumar S, Stetcher G, Li M, Knyaz C, Takamura K (2018). MEGA X. Molecular Evolutionary Genetics Analysis across computing platforms. Mol Biol and Evol. 35:1547-1549. Https://doi.org/10.1093/molbev/msy096.

Oka IGL (1995). Decreased white coloration of Bali cattle. Udayana University Scientific Magazine, No. 44, Th. XXII, p. 11-13.

Puja IK, Sulabda IN, and Wandia IN (2018). Microsatellite polymorphisms and its relationship with calving interval and gestation period in Bali cattle. Adv. Anim. Vet. Sci. 6(5): 197-200. http://dx.doi.org/10.17582/journal.aavs/2018/6.5.197.200.

Ringholm A, Klovins J, Rudzish R, Phillips S, Rees JL, Schioth HB (2004). Pharmacological characterization of loss of function mutations of the human melanocortin 1 receptor that are associated with red hair. J. Invest. Dermatol. 123, 917–923. Https://doi.org/10.1006/bbrc.1999.0935.

Slominski AT, Zmijewski MA, Plonka PM, Szaflarski JP, Paus R (2018). How UV Light Touches the Brain and Endocrine System Through Skin, and Why. Endocrinology. 159:1992–2007. https://doi.org/10.1210/en.2017-03230.

Song TZ, Chen XY, Wang GF, Zhou P, Ren HX (2019).The Genetics of Skin Color Variation in Farm Animals. Int. J. Zool. Anim. Biol, 2(3):000151. https://doi.org/10.23880/izab-16000151

Tabun AC, Hartatik T, and Sumadi SD (2013). Identification of melanocortin 1 receptor (MC1R) gene based on coat color of Bali cows of Kupang by using the PCR-RFLP method. J. Indonesian Trop. Anim. Agric. 38: 86-91. https://doi.org/10.14710/jitaa.38.2.86-91.

Tabun AC, Hartatik T, Sumadi SD, Volkandari BP, Suwandi, and Menu CL (2014). Sequencing of the melanocortin 1 receptor gene in Kupang female Bali cattle. Paper presented at the 2nd National Seminar on Science and Technology Undana 2014. Kupang.

Triinu Koressaar, Maido Remm (2007). Enhancements and modifications of primer design program Primer3. Bioinformatics, 10:1289-1291. Https://doi.org/10.1093/bioinformatics/btm091.

Wolf Horrell EM, Boulanger MC, D’Orazio JA (2016). Melanocortin 1 Receptor: Structure, Function, and Regulation. Front Genet. 31;7:95. https://doi.org/10.3389/fgene.2016.00095.

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Journal of Animal Health and Production

October

Vol. 11, Iss. 3, Pages 234-329

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