Morphological and molecular analysis of the tropical hermit crab Calcinus vachoni (Decapoda, Diogenidae) and its potential association with colonial anemone

View article
Aquatic Biology

Introduction

The family Diogenidae Ortmann, 1892 is one of the seven taxa in the superfamily Paguroidea Latreille, 1802 and consists of 22 genera (Lemaitre & McLaughlin, 2023b). They are found in various habitats, from intertidal to slightly deep subtidal, and most species are found in empty shells. Some species are known to show a symbiotic association with anemones. Members of this family are readily distinguished from other hermit crabs by their third maxillipeds that are close to each other in their bases. This family is also characterized by other characteristics: the left cheliped is generally larger than the right one, the antennular flagella terminate in a filament, no paired pleopods on the fourth and fifth abdominal somites, and the abdominal tergites are mostly not well calcified (McLaughlin, 2003). Among the genera of the Diogenidae, genus Calcinus is mostly moderate-to-large in body size and have 13 pairs of gills, left cheliped larger than the right one, moderate to well-developed triangular rostrum, and colorful carapace and pereopods (McLaughlin, 2003; McLaughlin et al., 2007). The color pattern of the Calcinus species is considered highly useful for distinguishing the species (McLaughlin et al., 2007; Malay & Paulay, 2010). Overall, 47 Calcinus species have been reported worldwide (McLaughlin et al., 2010; Lemaitre & McLaughlin, 2023a); most of these are found in the tropical or subtropical coral reefs in the Indo-West Pacific region (Malay & Paulay, 2010). They are considered to show a facultative symbiotic association with a wide range of coral species including Acanthastrea echinata, Pocillopora grandis, P. verrucosa, P. meandrina, Seriatopora hystrix, Acropora, Montipora, Porites, and Xenia spp. (Hazlett & Bach, 2010; Malay & Paulay, 2010; Britayev & Mikheev, 2013; Florida Museum Invertebrate Zoology Collection (http://specifyportal.flmnh.ufl.edu/iz/)). Nevertheless, a comprehensive phylogenetic and biogeographic analysis for the genus Calcinus species using multi-locus genetic information (mtDNA cox1 and 16S rDNA, and histone three nuclear DNA sequences) uncovered a wealth of hidden diversity of Calcinus species in which C. vachoni was subdivided into three cryptic lineages (i.e., C. vachoni, C. aff. vachoni Cooks, and C. aff. vachoni Mascarenes), each showing allopatric distribution (Malay & Paulay, 2010).

In the faunal study of hermit crabs in Korea, we found C. vachoni for the first time in the intertidal zone of Jeju Island—the southernmost island of South Korea. In the present study, we examined their morphology and provided a diagnosis of their morphological details with illustrations. We also conducted a molecular identification of the Korean C. vachoni specimens using the mtDNA cox1 sequences by comparing them with the previously published sequences available on GenBank that includes the sequences of Malay & Paulay (2010). In addition, we report the potential association of C. vachoni with the colonial anemone species Palythoa aff. mutuki for the first time based on on-site observation of their habitat, literature review and a public collection database of Calcinus species.

Materials and Methods

Twelve individuals of C. vachoni were collected from nearby living colonial anemones (Fig. 1) in the rocky intertidal zone of Gamsan-ri, Andeok-myeon, Seogwipo-si, Jeju Island (33°14′07.1″N 126°21′31.4″E), the Republic of Korea, on September 6, 2021. We determined ITS1-5.8S-ITS2 sequences and the partial sequence of 28S rDNA (GenBank accession nos.: OQ456449--OQ456456) for species identification of colonial anemones. Sequence comparison and BLAST search for our colonial anemone samples were not able to distinguish P. aff. mutuki from P. mutuki because the nucleotide sequences between these two species were very similar (95.4–98.4%), not separated in the previous analysis (Mizuyama, Masucci & Reimer, 2018). Nevertheless, the morphological characteristics of our samples agree with P. aff. mutuki in that they have a smooth capitular ridges surface (Fig. 1) consistent with Mizuyama, Masucci & Reimer (2018), differing them from P. mutuki with a jagged surface.

A tide pool where Calcinus vachoni was found co-occurring with the colonial anemone, Palythoa aff. mutuki.

Figure 1: A tide pool where Calcinus vachoni was found co-occurring with the colonial anemone, Palythoa aff. mutuki.

Red circle: Calcinus vachoni.

To investigate potential factors affecting the habitat of C. vachoni, a qualitative survey of on-site observation was conducted on 12 studied sites in tidepool areas within 500 m of their habitat (Table 1). Voucher specimens were deposited in the Honam National Institute of Biological Resources (HNIBR voucher specimen no.: HNIBRIV911). All specimens were fixed in 95% ethanol and subjected to morphological and molecular analysis. Morphological characteristics were examined using an MZ8 dissection microscope (Leica, Wetzlar, Germany). The shield length was measured as the body size from the tip of the rostrum to the midpoint of the posterior margin of the carapace using a CD6CSX digital caliper (Mitutoyo, Kawasaki, Japan) at the 0.1-mm scale. The main focus of the present study is to characterize morphological and molecular information of the Korean Calicinus species. Therefore, our taxon sampling for these analyses is limited to the Korean population, along with some other Micronesian Calicinus species as reference taxa (Table 2).

Table 1:
Detailed information on the 12 surveyed sites.
Site GPS Presence/absence of Calcinus vachoni Presence/absence of Palythoa aff. mutuki
Site #1 33°14′07.1″N 126°21′31.2″E O O
Site #2 33°14′07.4″N 126°21′31.5″E X O
Site #3 33°14′08.1″N 126°21′34.1″E X X
Site #4 33°14′10.3″N 126°21′32.7″E X X
Site #5 33°14′09.8″N 126°21′36.1″E X X
Site #6 33°14′09.2″N 126°21′34.9″E X X
Site #7 33°14′08.4″N 126°21′35.6″E X X
Site #8 33°14′06.6″N 126°21′34.1″E X X
Site #9 33°14′06.5″N 126°21′35.1″E X X
Site #10 33°14′06.3″N 126°21′36.3″E X X
Site #11 33°14′05.7″N 126°21′36.4″E X X
Site #12 33°14′05.3″N 126°21′37.8″E X X
DOI: 10.7717/peerj.15691/table-1

Note:

O, presence; X, absence.

Table 2:
GenBank accession numbers and geographic information of Decapoda species used for phylogenetic analysis in this study.
Family Species Location Specimen number mtDNA cox1 GenBank accession no
Calcinidae Calcinus vachoni Jeju, Korea HNIBRIV911 ON763592
ON763593
ON763594
ON763595
ON763596
Balingasay, Philippines UF 6748 FJ620291
Maug Island, Mariana Islands UF 5742 FJ620339
Okinawa, Japan UF 6992 FJ620395
China MK747767
Calcinus aff. vachoni Mascarenes Reunion Island, Mascarene Islands UF 12634 FJ620293
UF 13011 FJ620294
FJ620295
Sodwana Bay, South Africa MB-A066068 MH482034
MB-A065989 MH482078
Port Shepstone, South Africa MB-A066419 MH481935
MB-A066420 MH482017
Pumula, South Africa MB-A066399 MH481962
MB-A066397 MH482022
MB-A066398 MH482045
Calcinus aff. vachoni Cooks Rarotonga Island, Cook Islands UF 1377 FJ620296
UF 11702 FJ620292
Calcinus elegans Kosrae, Micronesia MADBK 160518_004 ON763555
MADBK 160518_006 ON763556
ON763557
Rangiroa Atoll, Tuamotu Archipelago UF 1351 FJ620284
Calcinus guamensis Kosrae, Micronesia MADBK 160535_002 ON763558
ON763559
Hiva Oa Island, Marquesas Islands UF 5171 FJ620288
Calcinus haigae Kosrae, Micronesia MADBK 160534_004 ON763560
ON763561
ON763562
American Samoa UF 3225 FJ620307
Calcinus laevimanus Kosrae, Micronesia MADBK 160519_016 ON763563
ON763564
Reunion Island, Mascarene Islands UF 5426 FJ620270
Calcinus lineapropodus Kosrae, Micronesia MADBK 160524_007 ON763565
ON763566
ON763567
Guam Island, Mariana Islands UF 1322 FJ620255
Calcinus minutus Kosrae, Micronesia MADBK 160536_005 ON763568
ON763569
American Samoa UF 3263 FJ620303
Calcinus morgani Kosrae, Micronesia MADBK 160530_001 ON763570
American Samoa UF 3236 FJ620277
Calcinus pulcher Kosrae, Micronesia MADBK 160537_003 ON763571
ON763572
ON763573
Pohnpei Island, Micronesia UF5396 FJ620377
Diogenidae (outgroup) Dardanus deformis Kosrae, Micronesia MADBK160523_007 ON763584
DOI: 10.7717/peerj.15691/table-2

Note:

Accession numbers in bold: sequences obtained from this study.

For molecular analysis, the first or second ambulatory legs of five Korean C. vachoni specimens were excised for total genomic DNA extraction using DNeasy Blood & Tissue Kits (Qiagen, Hilden, Germany). For molecular identification of Calcinus specimens, we performed phylogenetic analysis of mtDNA cox1 sequences obtained from 19 individuals of eight Calcinus species collected from South Korea and Micronesia that were newly sequenced in this study (voucher specimens of Micronesian hermit crabs have been deposited in the Marine Arthropod Depository Bank—MADBK; MADBK voucher specimen nos. are as follows: MADBK 160518_004, MADBK 160518_006, MADBK 160519_016, MADBK 160524_007, MADBK 160530_001, MADBK 160534_004, MADBK 160535_002, MADBK 160536_005, and MADBK 160537_003; Table 1). To amplify the mitochondrial cox1 gene fragment, the universal primers LCO1490 and HCO2198 were used (Folmer et al., 1994). Polymerase chain reaction (PCR) was performed using 3 µL of DNA template, 5 µL of 10 × Ex Taq buffer, 5 µL of dNTP mix (10 mM), 2 µL of each primer (10 µM), 0.25 µL of Go Taq DNA polymerase (Promega, Madison City, WI, USA), and 35.75 µL of distilled H2O to make up a total volume of 50 µL. PCR was conducted as per the following steps: 10 min denaturation at 94 °C, followed by 40 cycles of 1 min at 94 °C, 1.5 min at 45 °C, and 2 min at 72 °C and then a final extension for 10 min at 72 °C. PCR products were visualized on 1% agarose gels and sequenced using an ABI PRISM 3730xl DNA Analyzer (Applied Biosystems, Foster City, CA, USA). The nucleotide sequences of cox1 were edited using the Geneious Prime software v.2022.0.1 (Biomatters, Auckland, New Zealand) and its Clustal Omega program (Sievers et al., 2011). The cox1 sequences of the Korean C. vachoni specimens and the Micronesian samples were deposited in GenBank (MZ215675MZ215720). In addition, 25 mtDNA cox1 sequences of nine Calcinus species and an outgroup species (Dardanus deformis) were retrieved from GenBank and included in the phylogenetic analyses (Table 1).

Species identification of the Korean C. vachoni specimens was molecularly confirmed by reconstructing their phylogenetic relationships with other hermit crab species using maximum likelihood (ML) analysis of the cox1 sequence data with the MEGA10 program (Kumar et al., 2018). The ML analysis of cox1 sequences was performed based on the general time reversible models (Tavaré, 1986) with gamma distribution (+G) and invariable sites (+I) rate categories that were obtained from the Bayesian Information Criterion scores model using the jModelTest 2.1.7 application (Posada, 2008). The robustness of individual nodes in the ML trees was assessed using bootstrap analysis with 1,000 pseudo-replicates. Interspecific and intraspecific sequence divergences were estimated using the K2P distance matrix in the MEGA10 program.

Results and Discussion

Morphological characteristics of C. vachoni

The morphological characteristics of the Korean Calcinus specimens coincided with the original description of C. vachoni (Forest, 1958). The genus Calcinus is distinguishable from other hermit crab genera by the following morphological characteristics: 13 pairs of gills, left cheliped larger than the right one, absence of paired pleopods, and well-developed triangular rostrum. Calcinus vachoni is distinguishable from other congeneric species based on the following morphological characteristics: ventral margins of the dactyl and propodus of ambulatory legs have sparse tufts of setae; dorsal margin of the right chela has 3–6 tubercles; ventral margins of the dactyls and propodi of the second ambulatory legs have a higher number of tufts of setae compared with the margins of those of the first ambulatory legs; the telson exhibits numerous spines on the terminal to lateral margins; and the pereopods exhibit a cream dactyl and bluish-gray propodi. Since C. vachoni is currently divided into three haplogroups from molecular analysis (Malay & Paulay, 2010), i.e., C. vachoni, C. aff. vachoni Cooks, and C. aff. vachoni Mascarenes (Malay & Paulay, 2010), and Korean Calcinus specimens were identified as the C. vachoni haplogroup based on mtDNA cox1 sequences (see detail in the Results & Discussion section). Morphological diagnosis of the C. vachoni haplogroup is first reported below.

SYSTEMATICS

Class Malacostraca Latreille, 1802

Order Decapoda Latreille, 1803

Family Diogeinidae Ortmann, 1892

Genus Calcinus Dana, 1851

Calcinus vachoni Forest, 1958 (Figs. 2 and 3).

Calcinus vachoni Forest, 1958: 285, Figs. 2, 3, 9, 10, 15, 19; Morgan, 1990: 11, Fig. 2; Morgan, 1991: 205, Figs. 60–62; Poupin, 1997: 712, Figs. 6E, F, 8A–F; McLaughlin et al., 2007: 170–171; McLaughlin et al., 2010: 19; Arima, 2014: 42.

Calcinus seurati Miyake, 1963: 63; Matsuzawa, 1977: pl. 79, Fig. 3; Miyake, 1983: 113; Chang & Chen, 1992: 108 (not Calcinus seurati Forest, 1951).

Not Calcinus vachoni Lewinsohn, 1982: 53 (= Calcinus guamensis Wooster, 1984).

Materials examined: A total of 12 individuals (shield length 2.6–3.9 mm), Gamsan-ri, Andeok-myeon, Seogwipo-si, Jeju Island, Korea (33°14′05″N, 126°21′30″E) rocky intertidal, nearby colony of P. aff. mutuki, 6 Sep 2021, coll. J Jung, HNIBRIV911.

Diagnosis: A total of 13 pairs of phyllobranchiate gills. Shield (Figs. 2 and 3A) semi-ellipse, 1.1 times longer than width; rostrum and lateral projections broad triangular. Ocular peduncle 0.8 shield length, inflated basally; cornea slightly dilated; ocular acicles terminally bi- or trifid. Antennular and antennal peduncles shorter than ocular peduncles when fully extended. Pereopods with numerous fine granules. Chelipeds unequal, left appreciable larger. Lateral and dorsal surfaces of palm of left cheliped (Figs. 2 and 3B) without distinct spines or tubercles. Right cheliped (Figs. 2 and 3C) with 3–6 tubercles on dorsal surface of palm; carpus with 2–3 small spines on dorsal margin. Ambulatory legs (Figs. 2, 3D, and 3E) with numerous fine granules, 2.7–3.3 times as long as shield. Ventral margins of dactyl, propodus, and meri with tufts of moderate setae, other margins with sparse setae or naked; dactyl 0.4–0.5 propodus length, ventral margin with 4–5 corneous spines. First ambulatory leg with fewer tufts of setae on ventral margins of dactyl and propodus than on those of second. Abdomen twisted, membranous. No paired pleopods in either sex, abdominal tergites not well calcified. Uropods asymmetrical. Telson (Fig. 3F) asymmetrical, left posterior lobe larger than right; terminal and lateral margins of posterior lobes with numerous spines.

Dorsal view of Calcinus vachoni Forest, 1958 (male, shield length 3.5 mm, HNIBRIV911, abdomen lost).

Figure 2: Dorsal view of Calcinus vachoni Forest, 1958 (male, shield length 3.5 mm, HNIBRIV911, abdomen lost).

Calcinus vachoni Forest, 1958 (male, shield length 2.9 mm, HNIBRIV911).

Figure 3: Calcinus vachoni Forest, 1958 (male, shield length 2.9 mm, HNIBRIV911).

(A), Shield and cephalic appendages, dorsal view; (B), left cheliped, dorsal view; (C), right cheliped, dorsal view; (D), right first ambulatory leg, mesial view; (E), left second ambulatory leg, lateral view; (F), telson, dorsal view. Scale bar: 2 mm.

Color: Shield creamy white. Ocular peduncles bluish-gray; acicles creamy white. Antennular peduncle deep blue. Antennal flagellum red. Chelipeds generally bluish-gray except cream fingers. Ambulatory legs cream or light bluish-gray; dactyl generally cream.

Distribution: Jeju Island, Korea (a new record of its occurrence); Vietnam (type locality); Indo-Pacific region from South Africa to Easter Island and southern Japan; shallow subtidal to 20 m (Forest, 1958; Murata, Watanabe & Asakura, 1991; Poupin, 1997; Poupin, Boyko & Guzmán, 2003; McLaughlin et al., 2007; Malay & Paulay, 2010; Landschoff & Gouws, 2018).

Habitat: found in living P. aff. mutuki in intertidal zone; nearby living and dead corals such as P. verrucosa and other Pocillopora spp. from subtidal to 20 m depth (McLaughlin et al., 2007; Arima, 2014; Florida Museum, 2023).

Molecular phylogenetic analysis of Korean C. vachoni with some other Calcinus species

The phylogenetic tree from ML analysis revealed that Calcinus species formed a monophyletic group that is composed of multiple sequence assemblages representing individual Calcinus species, each receiving high branch support (mostly ≥99% of bootstrap supporting values; Fig. 4). This result is consistent with the previous phylogenetic study based on multiple molecular markers (cox1, 16S and 18S rDNA) that delimited the species boundary of the genus, including C. vachoni (Malay & Paulay, 2010). However, interrelationships among Calcinus species were not clearly resolved with low supporting values for internal noses in mtDNA cox1 sequence. Nevertheless, the phylogenetic tree from improved taxon sampling of the Korean Calcinus species in this study confirms the previous findings of Malay & Paulay (2010) that the cox1 sequences of C. vachoni were subdivided into three well-supported haplogroups (100% bootstrap support)—C. vachoni, C. aff. vachoni Cooks, and C. aff. vachoni Mascarenes. This highlights the regional monophyly according to their geographical origin, where the former two haplogroups were more closely related to each other than to C. aff. vachoni Mascarenes (Figs. 4 and 5). The C. vachoni haplogroup sampled from the temperate Northern Pacific/Central Indo-Pacific regions (including the Chinese and Korean cox1 haplotypes) was initially clustered with the C. aff. vachoni Cooks haplogroup (with a geographical origin of Cooks Island) belonging to the Eastern Indo-Pacific realm; it was then grouped with C. aff. vachoni Mascarenes (including the South African cox1 haplotypes) belonging to the Western Indo-Pacific region. In contrast to the relatively low intra-haplogroup sequence divergence (≤3.19%), the sequence divergence among the three C. vachoni haplogroups ranged from 12.2% (between C. vachoni and C. aff. vachoni Mascarenes) to 15.8% (between C. aff. vachoni Cooks and C. aff. vachoni Mascarenes); this was comparable to the average sequence divergence (12.3%) between different Calcinus species, such as that between C. haigae and C. minutus. This deep genetic divergence among the three geographic lineages was first discovered by Malay & Paulay (2010) based on the molecular analysis of three gene fragments (cox1, 16S rDNA, and H3). According to a recent biogeographic classification of the coastal/shelf areas worldwide that reflects the patterning of marine biodiversity and endemism (Spalding et al., 2007), the three regional haplogroups coincide with their spatial distribution belonging to different marine realms. From morphological and molecular analyses, the results of this study update an extended geographic distribution of C. vachoni further northward to the southern coast of Korea than previously reported. However, it still remains uncertain whether these three regional haplogroups represent morphologically indistinguishable but genetically distinct cryptic species. To resolve this taxonomic issue (i.e., cryptic species complex among different geographical assemblages) and elucidate the underlying mechanisms of their phylogenetic divergence, further investigation is required, including extensive taxon sampling from the three marine biogeographical realms for both morphological and molecular analyses.

Phylogenetic tree from the maximum likelihood analysis for mtDNA cox1 sequences of Calcinus species, including Korean C. vachoni specimens (blue) and Dardanus deformis (outgroup).

Figure 4: Phylogenetic tree from the maximum likelihood analysis for mtDNA cox1 sequences of Calcinus species, including Korean C. vachoni specimens (blue) and Dardanus deformis (outgroup).

Values on each node indicate bootstrap supporting values (≥50%). The names of the C. vachoni haplogroups refer to Malay & Paulay (2010). *Sequences newly determined in this study; **sequences retrieved from GenBank.
Map showing the localities of Calcinus samples whose cox1 sequences were analyzed in this study.

Figure 5: Map showing the localities of Calcinus samples whose cox1 sequences were analyzed in this study.

Green arrows: newly identified habitats of the three C. vachoni haplogroups in this study.

Ecological association between C. vachoni and colonial anemones

In this study, we conducted an on-site observation of C. vachoni habitat from 12 studied sites in tidepool areas. Out of 12 survey sites, 12 individuals of C. vachoni were exclusively found at site #1 where the colonial anemone P. aff. mutuki co-occurred (Table 2). Although it was estimated from a single event (found at site #1), their co-occurrence with colonial anemones suggests a putative association between C. vachoni and P. aff. mutuki. Hermit crabs are known to have symbiotic associations with many cnidarians, such as hydrozoans, sea anemones, and corals (Williams & McDermott, 2004; Jung & Kim, 2017). In a previous study, C. vachoni were reported to inhabit near corals (McLaughlin et al., 2007), and the microhabitat distribution of C. hazletti was positively affected by Pocillopora meandrina, which is their co-occurring coral species (Hazlett & Bach, 2010). Moreover, Iglesias (2007) suggested that the behavior of C. latens (other congeneric species) such as climbing, being withdrawn, being stationary, and locomoting is affected by chemicals released from surrounding organisms. Despite the rich source of information regarding the relationships between hermit crabs and corals, the ecological association between C. vachoni and their coral species has not yet been well-characterized. We additionally examined the collection data of Calcinus species from Florida Museum Invertebrate Zoology Collection database (http://specifyportal.flmnh.ufl.edu/iz/: as of April 2023) and found that 75% (60 out of 80) of C. vachoni records were associated with coral collections (i.e., found on dead coral head of Pocillopora species), suggesting their occurrence is likely associated with the presence of corals species. High proportion of dead coral heads of Pocillopora species provides a rich source of habitat for diverse invertebrates including many crustacean species (Madduppa et al., 2019). Our result is consistent with an earlier report that the occurrence of C. hazletti was more predominant in microhabitats of the cauliflower coral P. meandrina (Hazlett & Bach, 2010). The presence/absence data of a previous study showed that the behavior of Calcinus hermit crabs (e.g., C. latens) was affected by chemicals released by their co-occurring corals (Iglesias, 2007). Similarly, we observed all C. vachoni individuals were found to stay highly stationary with low feeding and locomotory activity until their death within 2 months in the absence of their colonial anemone partner (J Jung, 2021, personal observation). The co-occurrence of two living species does not always represent their ecological interactions (Blanchet, Cazelles & Gravel, 2020). Nevertheless, the implications of the presence/absence data obtained from both on-site and personal observations support the idea that the presence of colonial anemone species P. aff. mutuki might affect the habitat preference of C. vachoni in their natural environments in Korea. The results of this study putatively assume the ecological associations between C. vachoni and their colonial anemone counterpart P. aff. mutuki; however, it has to be validated by compelling evidence from further field observation and experimental studies (i.e., ex situ study to confirm whether the presence/absence of colonial anemones affects the behavior and survival of the hermit crabs).

Conclusions

In this study, the tropical hermit crab species C. vachoni was first reported in the intertidal zone of Jeju Island—the southernmost island of South Korea. Based on morphological and molecular analyses, we update an extended geographic distribution of C. vachoni haplogroup further northward to the southern coast of Korea than previously reported. In addition, the present study suggests potential ecological associations between C. vachoni and their colonial anemone counterpart P. aff. mutuki; however, it has to be validated by compelling evidence from further investigation of how the presence/absence of the colonial anemone affects the behavior and survival of the hermit crab C. vachoni.

  Visitors   Views   Downloads