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Genomic data from Fairy penguin (Eudyptula novaehollandiae).

Dataset type: Genomic
Data released on September 17, 2019

Pan H; Cole T; Couto A; Bi X; Machado AM; Brejova B; Fang M; Albertin CB; Zhou C; Silva F; Yang Z; Gardner P; Ksepka DT; Baril T; Hart T; Bouzat JL; Hayward A; Argilla LS; Campos A; Bertelsen MF; ; Barrio-Hernandez I; Boersma PD; Bost C; Hoving H; Cherel Y; Tafur-Jimenez R; Chu C; Dann P; Fiddaman SR; Frazão B; Howard P; Petersen B; Labuschagne K; Penaloza F; Mattern T; Musacchia F; Alexander Jr. GC; Miller G; Osório H; Parker P; Phillips RA; Winkelmann I; Quillfeldt P; Simakov O; Rasmussen S; Ryan PG; Rahman MZ; Taylor H; Pisani D; Thompson DR; Jarvis ED; Young MJ; Ellegaard MR; Zhang G; Gilbert MTP; Vinther J; Sinding MS; Strugnell JM; C. Castro LF; Pacheco G; Fedrigo O; Shepherd LD; D Tennyson AJ; Patricio M; Grosser S; Li Q; Kay E; Rocha S; Antunes A; Nupen LJ; Ellenberg U; Wu Y; Houston DM; Ma B; Reeve AH; Sanges R; Johnson K; Vinar T; Blagoev B; Masello JF; Sicheritz-Ponten T; Stracke T; McKinlay B; Nielsen R; García Borboroglu P; Gilbert MTP; Zhang DX; Zhang G (2019): Genomic data from Fairy penguin (Eudyptula novaehollandiae). GigaScience Database. https://doi.org/10.5524/102179

DOI10.5524/102179

The Australian fairy penguin (also known as little blue penguin, blue penguin and little penguin) is one of the smallest penguins. It is found widely along the southern coastlines of Australia and the Otago coast of New Zealand. They have a slate-blue plumage. Recent genetic, morphological and behavioral research has demonstrated that the Australian fairy penguin is a separate species to the New Zealand little blue penguin, however this still remains controversial. Populations have recently declined, and they are considered as Least Concern by the International Union for Conservation of Nature (IUCN), however this assessment still classifies the Australian and New Zealand species as conspecific.
We sequenced the genome of an adult Fairy penguin from Phillip Island, Victoria, Australia (provided by Peter Dann) to a depth of approximately 137x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.28Gb, with the contig and scaffold N50 values of 119.59Kb and 27.92Mb respectively. We identified 17188 protein-coding genes.

Additional details

Related datasets:

doi:10.5524/102179 IsPartOf doi:10.5524/100649

Accessions (data included in GigaDB):

BioSample: SAMN12384878

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Table Settings
Sample ID Common Name Scientific Name Sample Attributes Taxonomic ID Genbank Name
10/9/18-1 Eudyptula novaehollandiae Alternative accession-CNGB-Study:CNP0000605
Description:DNA extracted from the blood of a wild...
Common name:Fairy
...
2052820

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Table Settings

File Name Description Sample ID Data Type File Format Size Release Date File Attributes Download
Readme TEXT 2.71 kB 2019-09-03 MD5 checksum: b656e9950549c488b47488f6e6c9d97f
coding gene nucleotide sequences (fasta) Coding sequence FASTA 24.63 MB 2019-09-03 MD5 checksum: ad78c3308e6c2aca62037cde8d53afae
assembled genome from sequence data Genome sequence FASTA 396.64 MB 2019-09-03 MD5 checksum: 143fb1d2135574dae9199e6cd55c34bf
coding gene sequence annotations of assembled genome Annotation GFF 13.94 MB 2019-09-03 MD5 checksum: ad21d04462fb0ee69f07d173bd33aeaf
amino acid translation of the coding gene sequence predictions Protein sequence FASTA 9.28 MB 2019-09-03 MD5 checksum: b96dababb331e84b80975cf024ef12ac
BUSCO output files Other UNKNOWN 1.15 kB 2019-09-03 MD5 checksum: f8ec9f1df9636e56a0f3ef390a027cb9
Funding body Awardee Award ID Comments
Carlsbergfondet G Zhang CF CF16-0663
Ministry of Science and Technology (MOST) G Zhang 2018YFC1406901 National Key Research and Development Program
Chinese Academy of Sciences G Zhang XDB13000000 Strategic Priority Research Program
Chinese Academy of Sciences G Zhang XDB31020000 Strategic Priority Research Program
Lundbeckfonden G Zhang R190-2014-2827
Villum Fonden G Zhang 25900
European Research Council MTP Gilbert 681396 Extinction Genomics - Consolidator Grant
Shenzhen Municipality G Zhang JCYJ20170817150721687 Science Technology and Innovation Commission
Shenzhen Municipality G Zhang JCYJ20170817150239127 Science Technology and Innovation Commission
Date Action
September 17, 2019 Dataset publish