Genomic data from Fairy penguin (Eudyptula novaehollandiae).
Dataset type: Genomic
Data released on September 17, 2019
Pan H; Cole T; Couto A; Bi X; Machado AM; Brejova B; Fang M; Albertin CB; Zhou C; Silva F; Yang Z; Gardner P; Ksepka DT; Baril T; Hart T; Bouzat JL; Hayward A; Argilla LS; Campos A; Bertelsen MF; ; Barrio-Hernandez I; Boersma PD; Bost C; Hoving H; Cherel Y; Tafur-Jimenez R; Chu C; Dann P; Fiddaman SR; Frazão B; Howard P; Petersen B; Labuschagne K; Penaloza F; Mattern T; Musacchia F; Alexander Jr. GC; Miller G; Osório H; Parker P; Phillips RA; Winkelmann I; Quillfeldt P; Simakov O; Rasmussen S; Ryan PG; Rahman MZ; Taylor H; Pisani D; Thompson DR; Jarvis ED; Young MJ; Ellegaard MR; Zhang G; Gilbert MTP; Vinther J; Sinding MS; Strugnell JM; C. Castro LF; Pacheco G; Fedrigo O; Shepherd LD; D Tennyson AJ; Patricio M; Grosser S; Li Q; Kay E; Rocha S; Antunes A; Nupen LJ; Ellenberg U; Wu Y; Houston DM; Ma B; Reeve AH; Sanges R; Johnson K; Vinar T; Blagoev B; Masello JF; Sicheritz-Ponten T; Stracke T; McKinlay B; Nielsen R; García Borboroglu P; Gilbert MTP; Zhang DX; Zhang G (2019): Genomic data from Fairy penguin (Eudyptula novaehollandiae). GigaScience Database. https://doi.org/10.5524/102179
The Australian fairy penguin (also known as little blue penguin, blue penguin and little penguin) is one of the smallest penguins. It is found widely along the southern coastlines of Australia and the Otago coast of New Zealand. They have a slate-blue plumage. Recent genetic, morphological and behavioral research has demonstrated that the Australian fairy penguin is a separate species to the New Zealand little blue penguin, however this still remains controversial. Populations have recently declined, and they are considered as Least Concern by the International Union for Conservation of Nature (IUCN), however this assessment still classifies the Australian and New Zealand species as conspecific.
We sequenced the genome of an adult Fairy penguin from Phillip Island, Victoria, Australia (provided by Peter Dann) to a depth of approximately 137x with short reads from a series of libraries with various insert sizes (250bp-20Kb). The assembled scaffolds of high quality sequences total 1.28Gb, with the contig and scaffold N50 values of 119.59Kb and 27.92Mb respectively. We identified 17188 protein-coding genes.
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Additional details
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doi:10.5524/102179 IsPartOf doi:10.5524/100649
Accessions (data included in GigaDB):
BioSample: SAMN12384878
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Table SettingsSample ID | Common Name | Scientific Name | Sample Attributes | Taxonomic ID | Genbank Name |
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10/9/18-1 | Eudyptula novaehollandiae | Alternative accession-CNGB-Study:CNP0000605 Description:DNA extracted from the blood of a wild... Common name:Fairy ... |
2052820 |
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Table SettingsFile Name | Description | Sample ID | Data Type | File Format | Size | Release Date | File Attributes | Download |
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Readme | TEXT | 2.71 kB | 2019-09-03 | MD5 checksum: b656e9950549c488b47488f6e6c9d97f |
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coding gene nucleotide sequences (fasta) | Coding sequence | FASTA | 24.63 MB | 2019-09-03 | MD5 checksum: ad78c3308e6c2aca62037cde8d53afae |
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assembled genome from sequence data | Genome sequence | FASTA | 396.64 MB | 2019-09-03 | MD5 checksum: 143fb1d2135574dae9199e6cd55c34bf |
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coding gene sequence annotations of assembled genome | Annotation | GFF | 13.94 MB | 2019-09-03 | MD5 checksum: ad21d04462fb0ee69f07d173bd33aeaf |
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amino acid translation of the coding gene sequence predictions | Protein sequence | FASTA | 9.28 MB | 2019-09-03 | MD5 checksum: b96dababb331e84b80975cf024ef12ac |
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BUSCO output files | Other | UNKNOWN | 1.15 kB | 2019-09-03 | MD5 checksum: f8ec9f1df9636e56a0f3ef390a027cb9 |
Funding body | Awardee | Award ID | Comments |
---|---|---|---|
Carlsbergfondet | G Zhang | CF CF16-0663 | |
Ministry of Science and Technology (MOST) | G Zhang | 2018YFC1406901 | National Key Research and Development Program |
Chinese Academy of Sciences | G Zhang | XDB13000000 | Strategic Priority Research Program |
Chinese Academy of Sciences | G Zhang | XDB31020000 | Strategic Priority Research Program |
Lundbeckfonden | G Zhang | R190-2014-2827 | |
Villum Fonden | G Zhang | 25900 | |
European Research Council | MTP Gilbert | 681396 | Extinction Genomics - Consolidator Grant |
Shenzhen Municipality | G Zhang | JCYJ20170817150721687 | Science Technology and Innovation Commission |
Shenzhen Municipality | G Zhang | JCYJ20170817150239127 | Science Technology and Innovation Commission |
Date | Action |
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September 17, 2019 | Dataset publish |