Datasets related to the VirAnimalOne project

VirAnimalOne is a project focused on large scale mining of publicly deposited genomic and transcriptomic datasets available from ENA/SRA and derived from pets, livestock and wild animal species:

1. to identify unexpected coronavirus sequences;
2. to mine the host animal genomes for potential variants that might confer resistance or susceptibility to SARS-CoV-2 and other coronaviruses known to infect both humans and animals;
3. to phylogenetically and structurally evaluate host receptor conformations and infer potential animal susceptibility to coronavirus infections, with particular attention for SARS-Cov-2. 

Here, we report the pipeline, preliminary datasets and results produced in this project and related to the VirAnimalOne Technical Report:

• Technical_Report_VirAnimalOne_Pipeline. It reports and describes the bioinformatic pipeline used for the mining of the omics datasets.
• Tables S1-S6. Genome datasets used for mining activities.
• Table S7. List of host genes involved in coronavirus infection and used for mining polymorphisms in the host genome using the retrieved datasets.
• Table S8-S13. List of annotated variants in the selected host genes involved in coronavirus infection.
• Tables S14-S10. Viral sequences identified in the next-generation sequencing datasets generated from the selected domestic species.

Warning: Please, check for updated versions as data can present some inaccuracies.