TIBHannover/BacDiveR v0.5.0-beta
Description
This R package provides a programmatic interface for the Bacterial Diversity Metadatabase (Söhngen et al. 2014 & 2016) of the DSMZ (German Collection of Microorganisms and Cell Cultures). BacDiveR helps you conduct your microbial research better and faster, by:
-
downloading the BacDive datasets you want to investigate off-line, and by
-
providing you with a way to document and report your searches and downloads, in a reproducible manner (
.R
scripts and/or.Rmd
files).
It was also built to serve as a demonstration object during TIB's "FAIR Data & Software" workshop.
See TIBHannover.GitHub.io/BacDiveR for more details, /news there for the changelog, and GitHub.com/TIBHannover/BacDiveR for the latest source code.
Changelog for BacDiveR v0.5.0-beta
-
Added syncing of release versions to Zenodo, starting with 10.5281/zenodo.1308061
-
The JSON downloads are no longer purged of all space characters pre-emptively to prevent jsonlite from complaining about invalid encoding (#43). Instead, only
\r
,\n
and\t
are repaired to\\r
,\\n
and\\t
, which jsonlite expects. This leads to different output (newline & tabs, where previously only spaces occured)! Thus, if you are parsing BacDiveR output in any way, you may need to adjust that. Because I consider this unlikely given the "maturing" status, and because no API surface was changed, I don't consider this a major change in the SemVer.org sense.
Files
TIBHannover/BacDiveR-v0.5.0-beta.zip
Files
(764.2 kB)
Name | Size | Download all |
---|---|---|
md5:31caf9b040ef659d1fb6cee3a5be87a1
|
764.2 kB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/TIBHannover/BacDiveR/tree/v0.5.0-beta (URL)