Abstract
Objective
Leber’s hereditary optic neuropathy (LHON) is a maternally inherited degeneration of the optic nerve caused by point mutations of mitochondrial DNA (mtDNA). Many unsolved questions regarding the penetrance and pathophysiological mechanism of LHON demand efficient and reliable mutation testing. This study aims to develop a minor groove binder (MGB) probe assay for rapid detection of mtDNA11778 mutation and heteroplasmy in Chinese LHON patients by real-time polymerase chain reaction (PCR).
Methods
Forty-eight patients suspected of having LHON and their maternal relatives underwent a molecular genetic evaluation, with 20 normal individuals as a control group at the same time. A real-time PCR involving two MGB probes was used to detect the mtDNA11778 mutation and heteroplasmy. A linear standard curve was obtained by pUCmLHONG and pUCmLHONA clones.
Results
All 48 LHON patients and their maternal relatives were positive for mtDNA11778 mutation in our assay, 27 heteroplasmic and 21 homoplasmic. Eighteen cases did not show an occurrence of the disease, while 9 developed the disease among the 27 heteroplasmic mutation cases. Eleven did not show an occurrence of the disease, while 10 cases developed the disease among 21 homoplasmic mutation cases. There was a significant difference in the incidence between the heteroplasmic and the homoplasmic mutation types. The time needed for running a real-time PCR assay was only 80 min.
Conclusion
This real-time PCR assay is a rapid, reliable method for mtDNA mutation detection as well as heteroplasmy quantification. Detecting this ratio is very important for predicting phenotypic expression of unaffected carriers.
Similar content being viewed by others
References
Bai, R.K., Perng, C.L., Hsu, C.H., Wong, L.J., 2004. Quantitative PCR analysis of mitochondrial DNA content in patients with mitochondrial disease. Ann. NY Acad. Sci., 1011(2):304–309. [doi:10.1196/annals.1293.029]
Chabi, B., Mousson, D., Camaret, B., Duborjal, H., Issartel, J.P., Stepien, G., 2003. Quantification of mitochondrial DNA deletion, depletion, and overreplication: application to diagnosis. Clin. Chem., 49(8):1309–1317. [doi:10. 1373/49.8.1309]
Chinnery, P.F., Andrews, R.M., Turnbull, D.M., Howell, N.N., 2001. Leber hereditary optic neuropathy: does heteroplasmy influence the inheritance and expression of the G11778A mitochondrial DNA mutation? Am. J. Med. Genet., 98(3):235–243. [doi:10.1002/1096-8628(200101 22)98:3〈235::AID-AJMG1086〉3.0.CO;2-O]
Gourlain, K., Amellal, B., Ait, A.Z., Dupin, N., Katlama, C., Calvez, V., 2003. Quantitative analysis of human mitochondrial DNA using a real-time PCR assay. HIV Med., 4(3):287–292. [doi:10.1046/j.1468-1293.2003.00158.x]
Houshmand, M., Sharifpanah, F., Tabasi, A., Sanati, M.H., Vakilian, M., Lavasani, S.H., Joughehdoust, S., 2004. Leber’s hereditary optic neuropathy: the spectrum of mitochondrial DNA mutations in Iranian patients. Ann. NY Acad. Sci., 1011(2):345–349. [doi:10.1196/annals. 1293.035]
Howell, N., 2003. LHON and other optic nerve atrophies: the mitochondrial connection. Genetics in Ophthalmology, 37(1):94–108. [doi:10.1159/000072041]
Jia, X., Li, S., Xiao, X., Guo, X., Zhang, Q., 2006. Molecular epidemiology of mtDNA mutations in 903 Chinese families suspected with Leber hereditary optic neuropathy. J. Hum. Genet., 51(10):851–856. [doi:10.1007/s100 38-006-0032-2]
Man, P.Y., Griffiths, P.G., Brown, D.T., Howell, N., Turnbull, D.M., Chinnery, P.F., 2003. The epidemiology of Leber hereditary optic neuropathy in the North East of England. Am. J. Hum. Genet., 72(2):333–339. [doi:10.1086/346066]
Marotta, R., Chin, J., Quigley, A., Katsabanis, S., Kapsa, R., Byrne, E., Collins, S., 2004. Diagnostic screening of mitochondrial DNA mutations in Australian adults 1990–2001. Intern. Med. J., 34(1–2):10–19. [doi:10.1111/j.1444-0903.2004.t01-3-.x]
Mashima, Y., 2002. Leber’s hereditary optic neuropathy. Nippon. Rinsho., 60(4):282–286 (in Japanese).
Newman, N.J., Lott, M.T., Wallace, D.C., 1991. The clinical characteristics of pedigrees of Leber’s hereditary optic neuropathy with the 11778 mutation. Am. J. Ophthalmol., 111(3):750–762.
Sudoyo, H., Suryadi, H., Lertrit, P., Pramoonjago, P., Lyrawati, D., Marzuki, S., 2002. Asian-specific mtDNA backgrounds associated with the primary G11778A mutation of Leber’s hereditary optic neuropathy. J. Hum. Genet., 47(11):594–604. [doi:10.1007/s100380200091]
Volod’ko, N.V., L’vova, M.A., Starikovskaia, E.B., Derbeneva, O.A., Bychkov, I.Yu., Mikhaĭlovskaia, I.E., Pogozheva, I.V., Fedotov, F.F., Soyan, G.V., Procaccio, V., et al., 2006. Spectrum of pathogenic mtDNA mutations in Leber hereditary optic neuropathy families from Siberia. Genetika, 42(1):89–97 (in Russian).
Wallace, D.C., Singh, G., Lott, M.T., Hodge, J.A., Schurr, T.G., Lezza, A.M., Elsas, L.J., Nikoskelainen, E.K., 1988. Mitochondrial DNA mutation associated with Leber’s hereditary optic neuropathy. Science, 242(4884):1427–1430. [doi:10.1126/science.3201231]
Wang, Y., Tong, Y., Hu, S.X., Wang, J.Y., Shao, J.B., Zhang, H.X., 2007. Analysis on the effect of secondary mutations on Leber’s hereditary optic neuropathy. Zhonghua Yi Xue Yi Chuan Xue Za Zhi, 24(4):397–400 (in Chinese).
Yao, Y., Nellåker, C., Karlsson, H., 2006. Evaluation of minor groove binding probe and Taqman probe PCR assays: influence of mismatches and template complexity on quantification. Mol. Cell Probes, 20(5):311–316. [doi:10.1016/j.mcp.2006.03.003]
Yen, M.Y., Chen, Y.J., Lin, C.H., Wang, A.G., Wei, Y.H., 2003. Genetic analysis in Leber’s hereditary optic neuropathy using the comparative genomic hybridization technique. Clin. Experiment. Ophthalmol., 31(5):435–438. [doi:10.1046/j.1442-9071.2003.00692.x]
Zhang, H.Y., Wang, J.Y., Wang, J., 2005. To detect the mtDNA11778 mutation in the ancestry of Leber’s hereditary optic neuropathy. Zhejiang J. Prev. Med., 8:43–44 (in Chinese).
Zhang, X.N., Qi, M., 2008. Mitochondrion and its related disorders: making a comeback. J. Zhejiang Univ. Sci. B, 9(2):90–92. [doi:10.1631/jzus.B0710621]
Author information
Authors and Affiliations
Corresponding author
Additional information
Project partially supported by the “Qianjiang Research Talent”grant from the Science and Technology Department of Zhejiang Province, China
Rights and permissions
About this article
Cite this article
Wang, Jy., Gu, Ys., Wang, J. et al. MGB probe assay for rapid detection of mtDNA11778 mutation in the Chinese LHON patients by real-time PCR. J. Zhejiang Univ. Sci. B 9, 610–615 (2008). https://doi.org/10.1631/jzus.B0820058
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1631/jzus.B0820058
Key words
- Leber’s hereditary optic neuropathy (LHON)
- Mitochondrial DNA (mtDNA)
- MtDNA11778 mutation
- Minor groove binder (MGB) probe
- Real-time polymerase chain reaction (PCR)