X-Ray Diffraction data from MERS-CoV S1 NTD, source of 5VYH structure

Data DOI: 10.15785/SBGRID/495 | ID: 495

Publication DOI: 10.1073/pnas.1707304114

5VYH Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

McLellan Laboratory, University of Texas at Austin

Release Date: 19 Sep 2017

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/495

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/495 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/495 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/495 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/495 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 495 ; shasum -c files.sha'

Storage requirements: 12G

Biological Sample:

MERS-CoV S1 NTD

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

BL14-1, SSRL, SLAC National Accelerator Laboratory

Data Creation Date:

3 Dec 2015

Related Datasets:

None


Cite this Dataset

Wang, N; McLellan, JS. 2017. "X-Ray Diffraction data for: MERS-CoV S1 NTD. PDB Code 5VYH", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/495.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Nianshuang WangData Collector, DepositorGeisel School of Medicine at Dartmouth
Jason S McLellanGeisel School of Medicine at Dartmouth
Jason McLellanPIUniversity of Texas at Austin

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.18076

Sweep:

SWEEP1

Files:

/programs/datagrid/495/NTD_X3_12_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.13)

Distance:

250.0 -> 249.36

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.92 5.21 1.92
Low resolution limit 46.71 46.72 1.95
Completeness 93.1 91.8 64.9
Multiplicity 3.5 3.4 2.7
I/sigma 3.7 9.8 0.4
Rmerge 0.155 0.044 2.648
CC half 0.994 0.997 0.331
Anomalous completeness 81.5 81.1 57.0
Anomalous multiplicity 1.9 1.9 1.9
Cell 136.89 49.89 274.14 90.0 103.82 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.18076

Sweep:

SWEEP1

Files:

/programs/datagrid/495/NTD_X3_12_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.35)

Distance:

250.0 -> 233.53

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.84 4.99 1.84
Low resolution limit 49.89 49.91 1.87
Completeness 94.5 100.0 67.3
Multiplicity 6.3 5.9 3.6
I/sigma 10.6 27.9 0.7
Rmerge 0.101 0.039 1.475
CC half 0.994 0.993 0.282
Anomalous completeness 93.8 98.7 66.9
Anomalous multiplicity 3.3 3.3 3.3
Cell 49.89 84.51 107.84 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.18076

Sweep:

SWEEP1

Files:

/programs/datagrid/495/NTD_X3_12_#####.mccd

Images:

1 - 360

Beam:

(162.5, 162.5) -> (162.5, 162.23)

Distance:

250.0 -> 250.55

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.15 5.83 2.15
Low resolution limit 133.05 133.31 2.18
Completeness 99.8 100.0 97.7
Multiplicity 3.7 3.6 3.7
I/sigma 4.2 8.9 1.1
Rmerge 0.351 0.147 0.94
CC half 0.781 0.901 0.009
Anomalous completeness 93.7 99.8 87.1
Anomalous multiplicity 2.0 2.0 2.0
Cell 137.018 49.899 274.382 90.0 103.814 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.