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BY-NC-ND 3.0 license Open Access Published by De Gruyter (O) January 20, 2016

Crystal structure of 3-(thiophen-2-yl)-5-(p-tolyl)-4,5-dihydro-1H-pyrazole-1-carboxamide

  • Assem Barakat , Naveen Shivalingegowda , Nagamallu Renuka , Ajay Kumar Kariyappa , Muneer Abdoh , Ismail Warad EMAIL logo and Neratur Krishnappagowda Lokanath

Abstract

C15H15N3OS, monoclinic, P21/c (No. 14), a = 10.2852(5) Å, b = 10.1649(5) Å, c = 14.7694(8) Å, β = 107.442(2)°, V = 1473.12(13) Å3, Z = 4, Rgt(F) = 0.0449, wRref(F2) = 0.1275, T = 293(2) K.

CCDC no.:: 1401402

The crystal structure is shown in the figure, Tables 13 contain details of the measurement method and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Yellow, rectangle, size 0.230×0.250×0.270 mm
Wavelength:Cu Kα radiation (1.54178 Å)
μ:19.42 cm−1
Diffractometer, scan mode:Bruker X8 Proteum, φ and ω scans
2θmax:128.98°
N(hkl)measured, N(hkl)unique:10384, 2414
N(param)refined:183
Programs:Bruker data collection and reduction software [11], SHELX [12], Mercury [13]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomSitexyzUiso
H(3)4e0.33220.91460.70280.074
H(4)4e0.11140.92510.73280.088
H(5)4e0.09180.77160.84850.097
H(9)4e0.80720.77240.76980.054
H(10A)4e0.61470.88480.74580.058
H(10B)4e0.54100.78240.66650.058
H(13A)4e0.87840.48121.01590.087
H(13B)4e0.73120.51600.97930.087
H(15)4e0.90650.70160.65440.076
H(16)4e0.91980.56470.53390.090
H(18)4e0.58760.37600.54580.071
H(19)4e0.57100.51390.66470.064
H(20A)4e0.76510.41210.39370.131
H(20B)4e0.69170.30170.43420.131
H(20C)4e0.85100.31370.47010.131
Table 3

Atomic displacement parameters (Å2).

AtomSitexyzU11U22U33U12U13U23
S(1)4e0.31255(6)0.68794(6)0.87174(4)0.0692(4)0.0719(4)0.0950(5)0.0020(2)0.0427(3)0.0127(3)
O(12)4e0.9473(1)0.5885(1)0.88704(8)0.0451(7)0.0690(8)0.0546(7)0.0074(6)0.0107(5)0.0113(6)
N(7)4e0.6002(1)0.6468(1)0.85632(9)0.0450(8)0.0571(8)0.0464(7)0.0018(6)0.0139(6)0.0042(6)
N(8)4e0.7239(2)0.6363(2)0.8369(1)0.0431(8)0.0676(9)0.0435(7)0.0085(6)0.0119(6)0.0120(6)
N(13)4e0.8121(2)0.5185(2)0.9739(1)0.0564(9)0.095(1)0.066(1)0.0166(9)0.0174(8)0.0365(9)
C(2)4e0.3913(2)0.7667(2)0.7998(1)0.0458(9)0.0488(9)0.0508(9)−0.0022(7)0.0131(7)−0.0071(7)
C(3)4e0.3078(2)0.8608(2)0.7460(1)0.053(1)0.065(1)0.066(1)0.0097(9)0.0179(9)−0.0013(9)
C(4)4e0.1803(2)0.8669(2)0.7635(2)0.053(1)0.076(1)0.091(2)0.012(1)0.020(1)−0.005(1)
C(5)4e0.1691(2)0.7804(3)0.8288(2)0.057(1)0.082(2)0.115(2)−0.002(1)0.043(1)−0.009(1)
C(6)4e0.5272(2)0.7318(2)0.7985(1)0.0439(9)0.0459(9)0.0431(8)−0.0004(7)0.0094(7)−0.0022(7)
C(9)4e0.7288(2)0.7127(2)0.7526(1)0.0421(9)0.0501(9)0.0418(8)−0.0004(7)0.0100(7)0.0054(7)
C(10)4e0.5961(2)0.7922(2)0.7321(1)0.0470(9)0.0489(9)0.0481(9)0.0040(7)0.0119(7)0.0057(7)
C(11)4e0.8349(2)0.5804(2)0.9001(1)0.050(1)0.052(1)0.0428(8)0.0053(8)0.0086(7)0.0038(7)
C(14)4e0.7378(2)0.6230(2)0.6734(1)0.0414(8)0.0470(9)0.0407(8)0.0033(7)0.0071(7)0.0072(6)
C(15)4e0.8413(2)0.6362(2)0.6330(1)0.064(1)0.066(1)0.067(1)−0.0161(9)0.029(1)−0.0108(9)
C(16)4e0.8494(2)0.5531(2)0.5606(2)0.082(2)0.085(2)0.073(1)−0.011(1)0.043(1)−0.014(1)
C(17)4e0.7566(2)0.4540(2)0.5272(1)0.075(1)0.061(1)0.0450(9)0.008(1)0.0106(9)−0.0007(8)
C(18)4e0.6525(2)0.4416(2)0.5674(1)0.057(1)0.054(1)0.056(1)−0.0018(8)0.0002(8)−0.0011(8)
C(19)4e0.6426(2)0.5244(2)0.6391(1)0.0455(9)0.055(1)0.0559(9)−0.0019(8)0.0098(8)0.0023(8)
C(20)4e0.7671(3)0.3620(3)0.4492(2)0.119(2)0.082(2)0.060(1)0.008(1)0.025(1)−0.014(1)

Source of material

A mixture of 3-(4-methylphenyl)-1-(thiophen-2-yl)prop-2-en-1-one (0.001 mol) and semicarbazine hydrochloride (0.01 mol) and potassium hydroxide (0.02 mol) in ethyl alcohol (20 mL) was refluxed on a water bath for 6–8 hrs. The progress of the reaction was monitored by TLC. After completion of the reaction, the mixture was poured into ice cold water and stirred. The solid separated was filtered and washed with ice cold water. The product was recrystallized from ethyl alcohol to get the title compound.

1H NMR (CDCl3): δ 2.297 (s, 3H, CH3), 3.089–3.146 (dd, 1H, C4-Hb; J = 18.0, 8.5 Hz), 3.708–3.781 (dd, 1H, C4-Ha; J = 19.0, 10 Hz), 5.460–5.490 (dd, 1H, C5-Hc; J = 18.5, 9.5 Hz), 5.503 (s, 2H, -NH2), 7.017–7.382 (m, 7H, Ar—H and thiophene ring-H). 13C NMR (CDCl3): δ 21.08 (1C, CH3), 43.72 (1C, C-4), 60.01 (1C, C-5), 125.39 (2C, Ar—C), 127.55 (1C, 5m ring-C), 128.24 (1C, Ar—C), 129.54 (2C, Ar—C), 135.07 (1C, 5m ring-C), 137.24 (1C, 5m ring-C), 139.39 (1C, 5m ring-C), 147.39 (1C, C-3), 150.24 (1C, Ar—C), 155.10 (1C, C=O). MS (m/z): 286 (M+1, 39), 285 (M+, 32), 268 (8), 241 (10), 240 (100) Anal. Calcd. for C15H15N3 OS: C, 63.13; H, 5.30; N, 14.73% Found: C, 63.03; H, 5.20; N, 14.66%. M. P. 168–171° C.

Experimental details

All hydrogen atoms were identified in difference Fourier syntheses. The H atom were fixed geometrically and allowed to ride on their parent atoms: C—H = 0.93–0.98 Å with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for other H atoms.

Discussion

The five-membered heterocyclic pyrazole analogues have been extensively used as building blocks in organic synthesis. They have been efficiently transformed into a potential medicinally and pharmaceutically important molecule. Pyrazole derivatives have known to exhibit diverse biological applications such as antidiabetic [1], anaesthetic [2], antimicrobial and antioxidant [3]. In addition, they have also shown potential anticancer [4], antiamoebic [5], potent and selective inhibitors of tissue-nonspecific alkaline phosphatase. Earlier we have synthesized α and β-unsaturated compounds which served as useful intermediates for the synthesis of pyrazolines [6] and thiazepines [7]. As a part of our ongoing research on pyrazoles [8], the synthesis, characterization and the structural structure determination was undertaken.

The molecular structure of the title compound is twisted. The study of torsion angles, assymmetric parameters and least squares plane reveals that the central pyrazole ring adopts a flattened envelope conformation with C9 atom deviating by 0.0588(18) Å from the Cremer and Pople plane [9]. This is confirmed by the puckering amplitude Q = 0.0934(18) Å and φ = 77.2(10) °. The carboxamide group is slightly twisted from the pyrazole ring as indicated by the torsions angles N13—C11—N8—N7 = 10.1(2)° and O12—C11—N8—N7 = −170.01(15)°. The pyrazole ring is nearly coplanar with the thiophene ring as indicated by the dihedral angle value of 6.51° whereas the pyrazole ring is almost orthogonal to the methylphenyl ring as indicated by the dihedral angle value of 86.13(9)°. The thiophene and the methylphenyl ring are inclined at an angle of 83.1(1)° with each other.

The title compound is chiral. In the arbitrarily chosen asymmetric molecule, the compound possess a chiral center at C9 with R conformation. Since the compound crystallizes in a centrosymmetric space group, we can surmise that the compound is a racemic mixture. The molecular conformation is stabilized by a strong intramolecular N–H⋯N hydrogen bond between the nitrogen of the pyrazole ring and the nitrogen of the amide moiety which form S(6) ring motif. In the crystal, the N–H⋯O hydrogen bond links pairs of molecules related by inversion (R22(8) ring motif [10]). The packing of the molecules when viewed down along the a axis indicate that the molecules exhibit layered stacking to form a two dimensional structure.


Corresponding author: Ismail Warad, Department of Chemistry, Science College, An-Najah National University, P.O. Box 7, Nablus, Palestine, e-mail:

Acknowledgements:

The authors would like to extend their sincere appreciation to the Deanship of Scientific Research at King Saud University for its funding this Research group NO (RG -257-1435-1436). The authors are thankful to IOE, Vijnana Bhavana, University of Mysore, Mysore for providing the single-crystal X-ray diffraction facility.

References

1. Amir, M.; Kumar, H.; Khan, S. A.: Synthesis and pharmacological evaluation of pyrazoline derivatives as new anti-inflammatory and analgesic agents. Bioorg. Med. Chem. Lett. 18 (2008) 918–922.10.1016/j.bmcl.2007.12.043Search in Google Scholar

2. Shivarama Holla, B.; Mahalinga, M.; Boja, P.; Mithun, A.: Synthesis of pyrazolines promoted by Amberlyst-15 catalyst. Eur. J. Med. Chem. 15 (1980) 567–570.Search in Google Scholar

3. Renuka, N.; Ajay Kumar, K.: Synthesis and biological evaluation of novel formyl-pyrazoles bearing coumarin moiety as potent antimicrobial and antioxidant agents. Bioorg. Med. Chem. Lett. 23 (2013) 6406–6409.10.1016/j.bmcl.2013.09.053Search in Google Scholar

4. Kalirajan, R,; Leela, R.; Jubie. S.; Gowramma, B.; Gomathi, S.; Sankar, S.: Microwave assisted synthesis of some novel pyrazole substituted benzimidazoles and evaluation of their biological activities. Ind. J. Chem. 50B (2013) 1794–1799.Search in Google Scholar

5. Abid, M.; Azam, A.: Synthesis, characterization and antiamoebic activity of 1-(thiazolo[4,5-b]quinoxaline-2-yl)-3-phenyl-2-pyrazoline derivatives. Bioorg. Med. Chem. Lett. 16 (2006) 2812–2816.10.1016/j.bmcl.2006.01.116Search in Google Scholar

6. Manjula, M.; Jayaroopa, P.; Manjunath, B. C.; Ajay Kumar, K.; Lokanath, N. K.: 3-Methyl-1,5-diphenyl-4,5-dihydro-1H-pyrazole. Acta Cryst. E69 (2013) o602–o602.10.1107/S1600536813007575Search in Google Scholar PubMed PubMed Central

7. Manjunath, B. C.; Manjula, M.; Raghavendra, K. R.; Ajay Kumar, K.; Shashikanth, S; Lokanath, N. K.: 2-(3,4-Dimethoxyphenyl)-4-(thiophen-2-yl)-2,3-dihydro-1,5-benzothiazepine. Acta Cryst. E70 (2014) o121–o121.10.1107/S1600536813034612Search in Google Scholar PubMed PubMed Central

8. Naveen, S.; Pavithra, G.; Muneer, A.; Ajay Kumar, K.; Warad, I.; Lokanath N. K.: Crystal structure of 3-(thiophen-2-yl)-5-(p-tolyl)-4,5-dihydro-1H-pyrazole-1-carbothioamide. Acta Cryst. E71 (2015) 763–765.10.1107/S2056989015010774Search in Google Scholar

9. Cremer, D.; Pople, J. A.: General definition of ring puckering coordinates. J. Am. Chem. Soc. 97 (1975) 1354–1358.10.1021/ja00839a011Search in Google Scholar

10. Bernstein, J.; Davis, R. E.; Shimoni, L.; Chang, N-L.: Patterns in hydrogen bonding: functionality and graph set analysis in crystals. Angew. Chem. Int. Ed. 34 (1995) 1555–1573.10.1002/anie.199515551Search in Google Scholar

11. Bruker: APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA 2013.Search in Google Scholar

12. Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed

13. Macrae, C. F.; Bruno, I. J.; Chisholm, J. A.; Edgington, P. R.; McCabe, P.; Pidcock, E.; Rodriguez-Monge, L.; Taylor, R.; van de Streek, J.; Wood, P. A.: Mercury CSD 2.0 - New Features for the Visualization and Investigation of Crystal Structures. J. Appl. Cryst. 41 (2008) 466–470.10.1107/S0021889807067908Search in Google Scholar

Received: 2015-6-4
Accepted: 2015-12-17
Published Online: 2016-1-20
Published in Print: 2016-3-1

©2016 Assem Barakat et al., published by De Gruyter.

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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