Skip to main content
Log in

Quantitative structure–activity relationships (QSARs) within the cytochrome P450 system: QSARs describing substrate binding, inhibition and induction of P450s

  • Published:
InflammoPharmacology Aims and scope Submit manuscript

Abstract

Quantitative structure-activity relationships (QSARs) within substrates, inducers and inhibitors of cytochromes P450 involved in xenobiotic metabolism are reported, together with QSARs associated with induction, inhibition and metabolic rate. The importance of frontier orbitals and shape descriptors, such as planarity (estimated by the area/depth2 parameter) and rectangularity (estimated by the length/width parameter) is discussed, particularly in the context of the COMPACT system which discriminates between several P450 families associated with the activation and detoxication of xenobiotics. The use of parameters, particularly those derived from homology modelling of mammalian (especially human) P450s that are involved in exogenous metabolism, in generating QSARs for P450 substrates is discussed in the context of explaining differences in the binding affinities of human P450 substrates which are pharmacologically active.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

REFERENCES

  • Andrews, P. R., Craik, D. J. and Martin, J. L. (1984). Functional group contributionsto drug-receptor interactions, J. Med. Chem. 28, 1648–1657.

    Google Scholar 

  • Anzenbacher, P. and Anzenbacherova, E. (2001). Cytochromes P450 and metabolism of xenbiotics, Cell. Mol. Life Sci. 58, 737–747.

    Google Scholar 

  • Ayrton, A. D., McFarlane, M., Walker, R., et al. (1990). The induction of P450 1 proteins by aromatic amines may be related to their carcinogenic potential, Carcinogenesis 4, 803–809.

    Google Scholar 

  • Bauer, C., Osman, A. M., Cercignani, G., et al. (2001). A unified theory of enzyme kinetics based upon the systematic analysis of the variations of k cat, K m, and k cat=K m and the relevant ΔG o‡ values — possible implications in chemotherapy and biotechnology, Biochem. Pharmacol. 61, 1049–1055.

    Google Scholar 

  • Brown, L. P., Lewis, D. F. V., Orton, T. C., et al. (1989). Teratology of phenylhydantoinsin an in vitro system: molecular orbital-generatedquantitative structure-activity relationships, Xenobiotica 19, 1471–1481.

    Google Scholar 

  • Brown, S. J., Raja, A. A. and Lewis, D. F. V. (1994). A comparison between COMPACT and HazardExpert evaluations for 80 chemicals tested by the NTP/ NCI rodent bioassay, Alt. Lab, Animals 22, 482–500.

    Google Scholar 

  • Cheung, Y.-L., Lewis, D. F. V., Gray, T. J. B., et al. (1997). Diaminonaphthalenes and related amino compounds: mutagenicity, CYP1A induction and interaction with the Ah receptor, Toxicology 118, 115–127.

    Google Scholar 

  • Connolly, M. L. (1983). Solvent-accessible surfaces of proteins and nucleic acids, Science 221, 709–713.

    Google Scholar 

  • Cronin, M. T. D., Manga, N., Seward, J. R., et al. (2001). Parameterization of electrophilicity for the prediction of the toxicity of aromatic compounds, Chem. Res. Toxicol. 14, 1498–1505.

    Google Scholar 

  • Csizmadia, F., Tsantili-Kakoulidou, A., Panderi, I., et al. (1997). Prediction of distribution coefficient from structure. 1. Estimation method, J. Pharm. Sci. 86, 865–871.

    Google Scholar 

  • da Silva, J. J. R. F. and Williams, R. J. P. (1991). The Biological Chemistry of the Elements. Clarendon Press, Oxford.

    Google Scholar 

  • Ekins, S., de Groot, M. J. and Jones, J. P. (2001). Pharmacophore and three-dimensional quantitative structure activity relationship methods for modeling cytochrome P450 active sites, Drug Metab. Dispos. 29, 936–944.

    Google Scholar 

  • Evans, W. E. and Relling, M. V. (1999). Pharmacogenomics: translating functional genomics into rational therapeutics, Science 286, 487–491.

    Google Scholar 

  • Fleming, I. (1980). Frontier Orbitals and Organic Chemical Reactions. Wiley, Chichester.

    Google Scholar 

  • Gao, H. and Hansch, C. (1996). QSAR of P450 oxidation: on the value of comparing k cat and K m with k cat=K m, Drug Metab. Rev. 28, 513–526.

    Google Scholar 

  • Guengerich, F. P. (2001). Common and uncommon cytochrome P450 reactions related to metabolism and chemical toxicity, Chem. Res. Toxic. 14, 611–650.

    Google Scholar 

  • Guengerich, F. P. (2002). Cytochrome P450, in: Enzyme Systems that Metabolize Drugs and other Xenobiotics, C. Ioannides (Ed.), Ch. 2, pp. 33–65. Wiley, New York, NY.

    Google Scholar 

  • Hansch, C. (1993). Quantitative structure-activityrelationships and the unnamed science, Acc. Chem. Res. 26, 147–153.

    Google Scholar 

  • Hansch, C. and Leo, A. J. (1979). Substituent Constants for Correlation Analysis in Chemistry and Biology. Wiley, New York.

    Google Scholar 

  • Hansch, C. and Zhang, L. (1993). Quantitative structure-activity relationships of cytochrome P450, Drug Metab. Rev. 25, 1–48.

    Google Scholar 

  • Hodgson, E. (2001). In vitro phase 1 metabolism of xenobiotics 1: pesticides and related chemicals used in agriculture and public health, J. Biochem. Mol. Toxicol. 15, 296–299.

    Google Scholar 

  • Ioannides, C., Lewis, D. F. V. and Parke, D. V. (1995). Mechanisms of chemical carcinogenesis and molecular parametric analysis in the safety evaluation of chemicals, in: Drug, Diet and Disease, Volume 1. Mechanistic Approaches to Cancer, C. Ioannides and D. F. V. Lewis (Eds), pp. 1–46. Ellis Horwood, Chichester.

    Google Scholar 

  • Karelson, M., Lobanov, V. S. and Katritzky, A. R. (1996). Quantum-chemical descriptors in QSAR/ QSPR studies, Chem. Rev. 96, 1027–1043.

    Google Scholar 

  • Kubinyi, H. (1997). QSAR and 3D QSAR in drug design. Part 2: applications and problems, Drug Discovery Today 2, 538–546.

    Google Scholar 

  • Leo, A. J. (1993). Calculating log Poct from structure, Chem. Rev. 93, 1281–1306.

    Google Scholar 

  • Lewis, D. F. V. (1986). MINDO/ 3: a review of the literature, Chem. Rev. 86, 1111–1123.

    Google Scholar 

  • Lewis, D. F. V. (1990). MO-QSARs: a review of molecular orbital-generated quantitative structure-activity relationships, Progr. Drug Metab. 12, 205–255.

    Google Scholar 

  • Lewis, D. F. V. (1992a). Computer modelling of cytochromes P450 and their substrates: a rational approach to the prediction of carcinogenicity, Front. Biotransform. 7, 90–136.

    Google Scholar 

  • Lewis, D. F. V. (1992b). Computer-assisted methods in the evaluation of chemical toxicity, Rev. Comput. Chem. 3, 173–222.

    Google Scholar 

  • Lewis, D. F. V. (1994a). Comparison between rodent carcinogenicity test results of 44 chemicals and a number of predictive systems, Regul. Toxicol. Pharmacol. 20, 215–222.

    Google Scholar 

  • Lewis, D. F. V. (1994b). Molecular structural studies in the rationalization of xenobiotic metabolism and toxicity, Toxicol. Ecotoxicol. News 1, 108–112.

    Google Scholar 

  • Lewis, D. F. V. (1995a). COMPACT and the importance of frontier orbitals in toxicity mediated by the cytochrome P450 mono-oxygenase system, Toxicol. Modeling 1, 85–97.

    Google Scholar 

  • Lewis, D. F. V. (1995b). Three-dimensionalmodels of human and other mammalian P450s constructed from an alignment with P450102 (P450bm3 ), Xenobiotica 25, 333–366.

    Google Scholar 

  • Lewis, D. F. V. (1996). Cytochromes P450: Structure, Function and Mechanism. Taylor and Francis, London.

    Google Scholar 

  • Lewis, D. F. V. (1997d). Molecular modelling, in: Food Chemical Risk Analysis, D. R. Tennant (Ed.), Chapter 7, pp. 163–194. Chapman and Hall, London.

    Google Scholar 

  • Lewis, D. F. V. (1997b). Quantitative structure-activity relationships in substrates, inducers and inhibitors of cytochrome P4501 (CYP1), Drug Metab. Rev. 29, 589–650.

    Google Scholar 

  • Lewis, D. F. V. (1998). The CYP2 family: models, mutants and interactions, Xenobiotica 28, 617–661.

    Google Scholar 

  • Lewis, D. F. V. (1999). Frontier orbitals in chemical and biological activity: quantitative relationships and mechanistic implications, Drug Metab. Rev. 31, 755–816.

    Google Scholar 

  • Lewis, D. F. V. (2000a). On the recognition of mammalian microsomal cytochrome P450 substrates and their characteristics, Biochem. Pharmacol. 60, 293–306.

    Google Scholar 

  • Lewis, D. F. V. (2000b). Structural characteristics of human P450s involved in drug metabolism: QSARs and lipophilicity profiles, Toxicology 144, 197–203.

    Google Scholar 

  • Lewis, D. F. V. (2001a). COMPACT: a structural approach to the modelling of cytochromes P450 and their interactions with xenobiotics, J. Chem. Technol. Biotechnol. 76, 237–244.

    Google Scholar 

  • Lewis, D. F. V. (2001b). Guide to Cytochromes P450 Structure and Function. Taylor and Francis, London.

    Google Scholar 

  • Lewis, D. F. V. (2002a). Homology modelling of CYP2 family enzymes based on the CYP2C5 crystal structure, Xenobiotica 32 (in press).

  • Lewis, D. F. V. (2002b). Modelling human P450s involved in drug metabolism, J. Inorg. Biochem. (in press).

  • Lewis, D. F. V. (2002c). Molecular modeling of human P450-substrate interactions, Drug Metab. Rev. 34 (in press).

  • Lewis, D. F. V. (2002d). Oxidative stress: the role of cytochromes P450 in oxygen activation, J. Chem. Technol. Biotechnol. (in press).

  • Lewis, D. F. V. (2002e). Structural models for cytochrome P450-mediated catalysis, J. Chem. Technol. Biotechnol. (submitted).

  • Lewis, D. F. V. (2002f). Essential requirements for substrate binding affinity and selectivity towards human CYP2 family enzymes, Arch. Biochem. Biophys. (submitted).

  • Lewis, D. F. V. and Broughton, H. B. (2002). Molecular binding interactions: their estimation and rationalization in QSARs in terms of theoretically-derived parameters, The Scientific World (in press).

  • Lewis, D. F. V. and Dickins, M. (2001). Quantitative structure-activityrelationships (QSARs) within series of inhibitors for mammalian cytochromes P450 (CYPs), J. Enzyme Inhib. 16, 321–330.

    Google Scholar 

  • Lewis, D.F.V. and Dickins, M. (2002a). Baseline lipophilicity relationships in human cytochromes P450 associated with drug metabolism, Toxicology (submitted).

  • Lewis, D. F. V. and Dickins, M. (2002b). Factors influencing rates and clearance in P450-mediated reactions: QSARs for substrates of the xenobiotic-metabolizing hepatic microsomal P450s, Toxicology 170, 45–53.

    Google Scholar 

  • Lewis, D. F. V. and Gorrod, J. W. (2002). Molecular orbital calculations and nicotine metabolism: a rationale for experimentally observed metabolite ratios, Drug Metab. Drug Interact. (in press).

  • Lewis, D. F. V. and Hlavica, P. (2000). Interactions between redox partners in various cytochrome P450 systems: functional and structural aspects, Biochim. Biophys. Acta 1460, 353–374.

    Google Scholar 

  • Lewis, D. F. V. and Jacobs, M. N. (1999). A QSAR study of some PCBs' ligand binding affinity to the cytosolic Ah receptor (AhR), Organohalogen Compounds 41, 537–540.

    Google Scholar 

  • Lewis, D. F. V. and Lake, B. G. (1997). A quantitative structure-activityrelationship (QSAR) analysis for a series of rodent peroxisome proliferators: interaction with the mouse liver peroxisome proliferator-activatedreceptor α(mPPARα), Toxicol. Vitro 11, 99–105.

    Google Scholar 

  • Lewis, D. F. V. and Lake, B. G. (1998). Molecular modelling of omeprazole interactions with cytochrome P450 isozymes is consistent with metabolism in human liver microsomes, Toxicology 125, 31–44.

    Google Scholar 

  • Lewis, D. F. V. and Lake, B. G. (1999). Molecular modelling of CYP4A subfamily members based on sequence homology with CYP102, Xenobiotica 29, 763–781.

    Google Scholar 

  • Lewis, D. F. V. and Lake, B. G. (2002). Species differences in coumarin metabolism: a molecular modelling evaluation of CYP2A interactions, Xenobiotica 32 (in press).

  • Lewis, D. F. V. and Langley, G. R. (1996). A validation study of the COMPACT and HazardExpert techniques with 40 chemicals, Mutation Res. 369, 157–174.

    Google Scholar 

  • Lewis, D. F. V. and Lee-Robichaud, P. (1998). Molecular modelling of steroidogenic cytochromes P450 from families CYP11, CYP17, CYP19 and CYP21 based on the CYP102 crystal structure, J. Steroid Biochem. Mol. Biol. 66, 217–233.

    Google Scholar 

  • Lewis, D. F. V. and Parke, D. V. (1995). The genotoxicityof benzanthracenes: a quantitativestructure-activity study, Mutation Res. 328, 207–214.

    Google Scholar 

  • Lewis, D. F. V. and Pratt, J. M. (1998). The P450 catalytic cycle and oxygenation mechanism, Drug Metabolism Reviews 30, 739–786.

    Google Scholar 

  • Lewis, D. F. V. and Sheridan, G. (2001). Cytochromes P450, oxygen and evolution, Sci. World 1, 151–167.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1986). Molecular dimensions of the substrate binding site of cytochrome P-448, Biochem. Pharmacol. 35, 2179–2185.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1987). Structural requirements for substrates of cytochromes P-450 and P-448, Chemico-Biol. Interact. 64, 39–60.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1989). Molecular orbital studies. Oxygen activation and mechanisms of cytochromes P450-mediated oxidative metabolism of xenobiotics, Chemico-Biol. Interact. 70, 263–280.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1993). Validationof a novel molecular orbital approach (COMPACT) to the safety evaluation of chemicals by comparison with Salmonella mutagenicity and rodent carcinogenicitydata evaluated by the US NCI/ NTP, Mutation Res. 291, 61–77.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1994a). Interaction of a series of nitriles with the alcohol inducible isoform of cytochrome P450: computer analysis of structure-activity relationships, Xenobiotica 24, 401–408.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1994b). Molecular modelling of cytochrome P4501A1: a putative access channel explains differences in induction potency between the isomers benzo(a)pyreneand benzo(e)pyreneand 2-and 4-acetylaminofluorene, Toxicol. Lett. 71, 235–243.

    Google Scholar 

  • Lewis, D. F. V., Lake, B. G., Ioannides, C., et al. (1994c). Inhibition of hepatic aryl hydrocarbon hydroxylase activity by a series of 7-hydroxycoumarins: QSAR studies, Xenobiotica 24, 829–838.

    Google Scholar 

  • Lewis, D. F. V., Moereels, H., Lake, B. G., et al. (1994d). Molecular modeling of enzymes and receptors involved in carcinogenesis: QSARs and COMPACT-3D, Drug Metab. Rev. 26, 261–285.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1995a). A quantitative structure-activity relationship study on a series of 10 para-substituted toluenes binding to cytochrome P4502B4 (CYP2B4) and also their hydroxylation rates, Biochem. Pharmacol. 50, 619–625.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1995b). A retrospective evaluation of COMPACT predictions of rodent carcinogenicitytesting fromthe NTP rodent bioassay results of 40 chemicals, Environ. Health Perspect. 103, 178–184.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1995c). Computer graphics analysis of the interaction of alkoxymethylene dioxybenzenes with cytochrome P4501, Toxicol. Lett. 76, 39–45.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1995d). Molecular orbital-generated QSARs in an homologous series of alkoxyresorufins and studies of their interactive docking with cytochromes P450, Xenobiotica 25, 1355–1369.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C., Parke, D. V., et al. (1995e). Quantitative structure-activityrelationships in some cooked food mutagens, Food Add. Contamin. 12, 715–724.

    Google Scholar 

  • Lewis, D. F. V., Eddershaw, P. J., Goldfarb, P. S., et al. (1996). Molecular modelling of CYP3A4 form an alignment with CYP102: identification of key interactions between putative active site residues and CYP3A-specific chemicals, Xenobiotica 26, 1067–1086.

    Google Scholar 

  • Lewis, D. F. V., Brantom, P. G., Ioannides, C., et al. (1997a). Nitrosamine carcinogenesis: rodent assays, quantitative structure-activityrelationships and human risk assessment, Drug Metab. Rev. 29, 1055–1078.

    Google Scholar 

  • Lewis, D. F. V., Eddershaw, P. J., Goldfarb, P. S. et al. (1997b). Molecular modelling of cytochrome P450 2D6 (CYP2D6) based on an alignment with CYP102: structural studies on specific CYP2D6 substrate metabolism, Xenobiotica 27, 319–340.

    Google Scholar 

  • Lewis, D. F. V., Dickins, M., Eddershaw, P. J., et al. (1998a). Molecular modelling of human CYP2C subfamily enzymes CYP2C9 and CYP2C19: rationalization of substrate specificity and site-directed mutagenesis experiments in the CYP2C subfamily, Xenobiotica 28, 235–268.

    Google Scholar 

  • Lewis, D. F. V., Eddershaw, P. J., Dickins, M., et al. (1998b). Structural determinants of P450 substrate specificity, binding affinity and catalytic rate, Chemico-Biol. Interact. 115, 175–199.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1998c). A combined COMPACT and HazardExpert study of 40 chemicals for which information on mutagenicity and carcingenicity is known, including the results of human epidemiological studies, Human Exp. Toxicol. 17, 577–586.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1998d). An improved and updated version of the COMPACT procedure for the evaluation of P450-mediated chemical activation, Drug Metab. Rev. 30, 709–737.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1998e). Cytochrome P450 and species differences in xenobiotic metabolismand activation of carcinogens, Environ. Health Perspect. 106, 633–641.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (1998f). Further validation of the COMPACT approach for the prospective safety evaluation of chemicals. Re-evaluation of 200 miscellaneous chemicals by comparison with rodent carcinogenicitydata fromthe US NCI/ NTP, Mutation Res. 412, 41–54.

    Google Scholar 

  • Lewis, D. F. V., Watson, E. and Lake, B. G. (1998g). Evolution of the cytochrome P450 superfamily: sequence alignments and pharmacogenetics, Mutation Res. 410, 245–270.

    Google Scholar 

  • Lewis, D. F. V., Dickins, M., Eddershaw, P. J., et al. (1999a). Cytochrome P450 substrate specificities, substrate structural templates and enzyme active site geometries, Drug Metab. Drug Interact. 15, 1–49.

    Google Scholar 

  • Lewis, D. F. V., Dickins, M., Lake, B. G., et al. (1999b). Molecular modelling of the human cytochrome P450 isoform CYP2A6 and investigations of CYP2A substrate selectivity, Toxicology 133, 1–33.

    Google Scholar 

  • Lewis, D. F. V., Lake, B. G., Dickins, M., et al. (1999c). Molecular modelling of the phenobarbital-inducible P450 isoforms: CYP2B1, CYP2B4 and CYP2B6 by homology with the substrate-bound CYP102 crystal structure, and evaluation of CYP2B substrate binding affinity, Xenobiotica 29, 361–393.

    Google Scholar 

  • Lewis, D. F. V., Lake, B. G., George, S., et al. (1999d). Molecular modelling of CYP1 family isoforms CYP1A1, CYP1A2, CYP1A6 and CYP1B1 based on sequence homology with CYP102, Toxicology 139, 53–79.

    Google Scholar 

  • Lewis, D. F. V., Wiseman, A. and Tarbit, M. H. (1999e). Molecular modelling of lansterol 14α-demethylase (CYP51) from Saccharomuces Cerevisiae via homology with CYP102, a unique bacterial cytochrome P450 isoform: quantitative structure-activityrelationships (QSARs) within a number of antifungal agents, J. Enzyme Inhib. 14, 175–192.

    Google Scholar 

  • Lewis, D. F. V., Bird, M. G., Dickins, M., et al. (2000a). Molecular modelling of human CYP2E1 by homology with the CYP102 haemoprotein domain: investigation of the interactions of substrates and inhibitors within the putative active site of the human CYP2E1 isoform, Xenobiotica 30, 1–25.

    Google Scholar 

  • Lewis, D. F. V., Ioannides, C., Parke, D. V., et al. (2000b). Quantitative structure-activityrelationships in a series of endogenous and synthetic steroids exhibiting induction of CYP3A activity and hepatomegaly associated with increased DNA synthesis, J. Steroid Biochem. Mol. Biol. 74, 179–185.

    Google Scholar 

  • Lewis, D. F. V., Lake, B. G., Bird, M. G., et al. (2000c). Molecular modelling of human CYP2E1 by homology with the CYP102 haemoprotein domain: investigation of the interactions of substrates and inhibitors within the putative active site of the CYP2E1 isoform, Xenobiotica 30, 1–25.

    Google Scholar 

  • Lewis, D. F. V., Modi, S. and Dickins, M. (2001). Quantitative structure-activity relationships (QSARs) within substrates of human cytochromes P450 involvedin drug metabolism, Drug Metab. Drug Interact. 18, 221–242.

    Google Scholar 

  • Lewis, D. F. V., Bird, M. G. and Jacobs, M. N. (2002a). Human carcinogens: an evaluation study via the COMPACT and HazardExpert procedures, Human Exp. Toxicol. (in press).

  • Lewis, D. F. V., Ioannides, C. and Parke, D. V. (2002b). A quantitative structure-activityrelationship (QSAR) study of mutagenicity in several series of organic chemicals likely to be activated by cytochrome P450 enzymes, Mutation Res. (submitted).

  • Lewis, D. F. V., Jacobs, M. N., Dickins, M., et al. (2002c). Molecular modelling of the peroxisome proliferator-activated receptor α(PPARα) from human, rat and mouse, based on homology with the human PPARγ crystal structure, Toxicol. Vitro 16 (in press).

  • Lewis, D. F. V., Jacobs, M. N., Dickins, M., et al. (2002d). Quantitative structure-activityrelationships for inducers of cytochrome P450 and nuclear receptor ligands involved in P450 regulation within the CYP1, CYP2, CYP3 and CYP4 families, Toxicology (in press).

  • Lewis, D. F. V., Modi, S. and Dickins, M. (2002e). Structure-activity relationships for human P450 substrates and inhibitors, Drug Metab. Rev. 34 (in press).

  • Lewis, D. F. V., Ogg, M. S., Goldfarb, P. S. and Gibson, G. G. (2002f). Molecular modelling of the human glucocorticoidreceptor (hGR) ligand binding domain (LBD) by homology with the human estrogen receptor α(hERα) LBD: quantitative structure-activity relationships within a series of CYP3A4 inducers where induction is mediated via hGR invovlement, J. Steroid Biochem. Mol. Biol. (submitted).

  • Livingstone, D. J. (2000). The characterization of chemical structures using molecular properties. A survey, J. Chem. Inform. Comput. Sci. 40, 195–209.

    Google Scholar 

  • Marcus, R. A. and Sutin, N. (1985). Electron transfers in chemistry and biology, Biochim. Biophys. Acta 811, 265–322.

    Google Scholar 

  • Moser, C. C. and Dutton, P. L. (1992). Engineering protein structure for electron transfer function in photosynthetic reaction centres, Biochim. Biophys. Acta 1101, 171–176.

    Google Scholar 

  • Parke, A. L., Ioannides, C., Lewis, D. F. V., et al. (1991). Molecular pathology of drug-disease interactions in chronic autoimmune inflammatory diseases, Inflammopharmacology 1, 3–36.

    Google Scholar 

  • Parke, D. V. (1994). The cytochromes P450 and mechanisms of chemical carcinogenesis, Environ. Health Perspect. 102, 852–853.

    Google Scholar 

  • Pliska, V., Testa, B. and van de Waterbeemd, H. (1996). Lipophilicity in Drug Action and Toxicity. VCH, Weinheim.

    Google Scholar 

  • Rendic, S. and DiCarlo, F. J. (1997). Human cytochrome P450 enzymes: a status report summarizing their reactions, substrate, inducers and inhibitors, Drug Metab. Rev. 29, 413–580.

    Google Scholar 

  • Rigby, M., Smith, E. B., Wakeham, W. A., et al. (1986). The Forces between Molecules. Clarendon Press, Oxford.

    Google Scholar 

  • Rodrigues, A. D. and Lin, J. H. (2001). Screening of drug candidates for their drug-drug interaction potential, Curr. Opin. Chem. Biol. 5, 396–401.

    Google Scholar 

  • Sangster, J. (1989). Octanol-water partitioncoefficients of simple organic compounds, J. Phys. Chem. Ref. Data 18, 1111–1229.

    Google Scholar 

  • Sarver, J. G., White, D., Erhardt, P., et al. (1997). Estimating xenobiotic half-lives in humans from rat data: influence of log P, Environ. Health Perspect. 105, 1204–1209.

    Google Scholar 

  • Sharp, K. A., Nicholls, A., Fine, R. F., et al. (1991). Reconciling the magnitude of the microscopic and macroscopic hydrophobic effects, Science 252, 106–109.

    Google Scholar 

  • Smith, D. A. (1994). Chemistry and enzymology: their use in the prediction of human drug metabolism, Eur. J. Pharm. Sci. 2, 69–71.

    Google Scholar 

  • Smith, D. A. and Jones, B. C. (1992). Speculations on the substrate structure-activity relationship (SSAR) of cytochrome P450 enzymes, Biochem. Pharmacol. 44, 2089–2098.

    Google Scholar 

  • Smith, D. A., Ackland, M. J. and Jones, B. C. (1997a). Properties of cytochrome P450 isoenzymes and their substrates: Part 1: active site characteristics, Drug Discov. Today 2, 406–414.

    Google Scholar 

  • Smith, D. A., Ackland, M. J. and Jones, B. C. (1997b). Properties of cytochrome P450 isoenzymes and their substrates: Part 2: active site characteristics, Drug Discov. Today 2, 479–486.

    Google Scholar 

  • Tomlinson, E. S., Lewis, D. F. V., Maggs, J. L., et al. (1997). In vitro metabolism of side-chain cleaved dexamethasone (9αF-A) is CYP3A4 mediated: rationalization of CYP2A4 and CYP17 (17, 20 lyase) involvement in dexamethasone metabolism in vitro based on molecular modelling studies, Biochem. Pharmacol. 54, 605–611.

    Google Scholar 

  • Tsantili-Kakoulidou, A., Panderi, I., Csizmadia, F., et al. (1997). Prediction of distribution coefficient from structure. 2. Validation of Prolog D, an expert system, J. Pharm. Sci. 86, 1173–1179.

    Google Scholar 

  • Vaes, W. H. J., Ramos, E. U., Vershaar, H. J. M., et al. (1998). Understanding and estimating membrane/ water partition coefficients: approaches to derive quantitative structure property relationships, Chem. Res. Toxicol. 11, 847–854.

    Google Scholar 

  • Williams, D. H., Cox, J. P. L., Doig, A. J., et al. (1991). Toward the semi-quantitative estimation of binding constants, J. Am. Chem. Soc. 113, 7020–7030.

    Google Scholar 

  • Wiseman, H. and Lewis, D. F. V. (1996). The metabolism of tamoxifen by human cytochromes P450 is rationalized by molecular modelling of the enzyme-substrate interaction: potential importance to its proposed anticarcinogenic/ carcinogenic actions, Carcinogenesis 17, 1357–1360.

    Google Scholar 

Download references

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Lewis, D.F.V. Quantitative structure–activity relationships (QSARs) within the cytochrome P450 system: QSARs describing substrate binding, inhibition and induction of P450s. Inflammopharmacology 11, 43–73 (2003). https://doi.org/10.1163/156856003321547112

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1163/156856003321547112

Navigation