Abstract.
Nanopores constitute devices for the sensing of nano-objects such as ions, polymer chains, proteins or nanoparticles. We describe what information we can extract from the current trace. We consider the entrance of polydisperse chains into the nanopore, which leads to a conductance drop. We describe the detection of these current blockades according to their shape. Finally, we explain how data analysis can be used to enhance our understanding of physical processes in confined media.
Graphical abstract
Similar content being viewed by others
References
S. Bhakdi, R. Fuessle, J. Tranum-Jensen, Proc. Natl. Acad. Sci. U.S.A. 78, 5475 (1981)
S.H. White, A.S. Ladokhin, S. Jayasinghe, K. Hristova, J. Biol. Chem. 276, 32395 (2001)
M.D. Peraro, F.G. van der Goot, Nat. Rev. Microbiol. 14, 77 (2015)
M. Todd, W. Longstaff, J. Pet. Technol. 24, 874 (1972)
J. Nittmann, G. Daccord, H.E. Stanley, Nature 314, 141 (1985)
F. Brochard, P.G. De Gennes, J. Chem. Phys. 67, 52 (1977)
M. Daoud, P. De Gennes, J. Phys. (Paris) 38, 85 (1977)
S. Daoudi, F. Brochard, Macromolecules 11, 751 (1978)
F. Brochard, P.G. De Gennes, J. Phys. Lett. 40, L399 (1979)
T. Sakaue, E. Raphaël, P.G. de Gennes, F. Brochard-Wyart, Europhys. Lett. 72, 83 (2005)
D. DeVault, J. Am. Chem. Soc. 65, 532 (1943)
C.S. Effenhauser, G.J.M. Bruin, A. Paulus, M. Ehrat, Anal. Chem. 69, 3451 (1997)
L. Beguin, B. Grassl, F. Brochard-Wyart, M. Rakib, H. Duval, Soft Matter 7, 96 (2011)
P.G. de Gennes, Proc. Natl. Acad. Sci. U.S.A. 96, 7262 (1999)
G. Guillot, L. Leger, F. Rondelez, Macromolecules 18, 2531 (1985)
J. Lal, Sunil K. Sinha, Loïc Auvray, J. Phys. II 7, 1597 (1997)
E.P. Gilbert, L. Auvray, J. Lal, Macromolecules 34, 4942 (2001)
J.J. Kasianowicz, E. Brandin, D. Branton, D.W. Deamer, Proc. Natl. Acad. Sci. U.S.A. 93, 13770 (1996)
G. Oukhaled, L. Bacri, J. Mathe, J. Pelta, L. Auvray, EPL 82, 48003 (2008)
L. Brun, M. Pastoriza-Gallego, G. Oukhaled, J. Mathé, L. Bacri, L. Auvray, J. Pelta, Phys. Rev. Lett. 100, 158302 (2008)
B.J. Jeon, M. Muthukumar, ACS Macro Lett. 3, 911 (2014)
A. Meller, L. Nivon, E. Brandin, J. Golovchenko, D. Branton, Proc. Natl. Acad. Sci. U.S.A. 97, 1079 (2000)
A. Fennouri, C. Przybylski, M. Pastoriza-Gallego, L. Bacri, L. Auvray, R. Daniel, ACS Nano 6, 9672 (2012)
G. Oukhaled, J. Mathe, A.L. Biance, L. Bacri, J.M. Betton, D. Lairez, J. Pelta, L. Auvray, Phys. Rev. Lett. 98, 158101 (2007)
M. Pastoriza-Gallego, L. Rabah, G. Gibrat, B. Thiebot, F.G. van der Goot, L. Auvray, J.M. Betton, J. Pelta, J. Am. Chem. Soc. 133, 2923 (2011)
A. Oukhaled, L. Bacri, M. Pastoriza-Gallego, J.M. Betton, J. Pelta, ACS Chem. Biol. 7, 1935 (2012)
L. Bacri, A.G. Oukhaled, B. Schiedt, G. Patriarche, E. Bourhis, J. Gierak, J. Pelta, L. Auvray, J. Phys. Chem. B 115, 2890 (2011)
J. Ettedgui, J.J. Kasianowicz, A. Balijepalli, J. Am. Chem. Soc. 138, 7228 (2016)
D. Coglitore, A. Merenda, N. Giamblanco, L.F. Dumée, J.M. Janot, S. Balme, Phys. Chem. Chem. Phys. 20, 12799 (2018)
M.T. Degiacomi, I. Iacovache, L. Pernot, M. Chami, M. Kudryashev, H. Stahlberg, F.G. van der Goot, M.D. Peraro, Nat. Chem. Biol. 9, 623 (2013)
I. Iacovache, S. De Carlo, N. Cirauqui, M. Dal Peraro, F.G. van der Goot, B. Zuber, Nat. Commun. 7, 12062 (2016)
M.W. Parker, J.T. Buckley, J.P. Postma, A.D. Tucker, K. Leonard, F. Pattus, D. Tsernoglou, Nature 367, 292 (1994)
M. Muthukumar, J. Chem. Phys. 118, 5174 (2003)
M. Muthukumar, J. Chem. Phys. 132, 195101 (2010)
B. Cressiot, A. Oukhaled, G. Patriarche, M. Pastoriza-Gallego, J.M. Betton, L. Auvray, M. Muthukumar, L. Bacri, J. Pelta, ACS Nano 6, 6236 (2012)
M. Moniatte, F. van der Goot, J. Buckley, F. Pattus, A. van Dorsselaer, FEBS Lett. 384, 269 (1996)
F. Piguet, H. Ouldali, F. Discala, M.F. Breton, J.C. Behrends, J. Pelta, A. Oukhaled, Sci. Rep. 6, 38675 (2016)
T. Gutsmann, T. Heimburg, U. Keyser, K.R. Mahendran, M. Winterhalter, Nat. Protoc. 10, 188 (2015)
M. Montal, P. Mueller, Proc. Natl. Acad. Sci. U.S.A. 69, 3561 (1972)
D. Deamer, M. Akeson, D. Branton, Nat. Biotechnol. 34, 518 (2016)
D. Pedone, M. Firnkes, U. Rant, Anal. Chem. 81, 9689 (2009)
A. Balijepalli, J. Ettedgui, A.T. Cornio, J.W.F. Robertson, K.P. Cheung, J.J. Kasianowicz, C. Vaz, ACS Nano 8, 1547 (2014)
Z. Gu, Y.L. Ying, C. Cao, P. He, Y.T. Long, Anal. Chem. 87, 907 (2015)
C. Plesa, C. Dekker, Nanotechnology 26, 084003 (2015)
J. Zhang, X. Liu, Y.L. Ying, Z. Gu, F.N. Meng, Y.T. Long, Nanoscale 9, 3458 (2017)
G. Baaken, N. Ankri, A.K. Schuler, J. Ruehe, J.C. Behrends, ACS Nano 5, 8080 (2011)
J. Larkin, R.Y. Henley, M. Muthukumar, J.K. Rosenstein, M. Wanunu, Biophys. J. 106, 696 (2014)
J.E. Hall, J. Gen. Physiol. 66, 531 (1975)
C. Raillon, P. Granjon, M. Graf, L.J. Steinbock, A. Radenovic, Nanoscale 4, 4916 (2012)
F. Piguet, F. Discala, M.F. Breton, J. Pelta, L. Bacri, A. Oukhaled, J. Phys. Chem. Lett. 5, 4362 (2014)
J.H. Forstater, K. Briggs, J.W.F. Robertson, J. Ettedgui, O. Marie-Rose, C. Vaz, J.J. Kasianowicz, V. Tabard-Cossa, A. Balijepalli, Anal. Chem. 88, 11900 (2016)
S.C. Liu, M.X. Li, M.Y. Li, Y.Q. Wang, Y.L. Ying, Y.J. Wan, Y.T. Long Faraday Discuss. https://doi.org/10.1039/C8FD00023A (2018)
S.E. Henrickson, M. Misakian, B. Robertson, J.J. Kasianowicz, Phys. Rev. Lett. 85, 3057 (2000)
B. Cressiot, E. Braselmann, A. Oukhaled, A.H. Elcock, J. Pelta, P.L. Clark, ACS Nano 9, 9050 (2015)
M.F. Breton, F. Discala, L. Bacri, D. Foster, J. Pelta, A. Oukhaled, J. Phys. Chem. Lett. 4, 2202 (2013)
J.E. Reiner, J.J. Kasianowicz, B.J. Nablo, J.W.F. Robertson, Proc. Natl. Acad. Sci. U.S.A. 107, 12080 (2010)
M. Boukhet, F. Piguet, H. Ouldali, M. Pastoriza-Gallego, J. Pelta, A. Oukhaled, Nanoscale 8, 18352 (2016)
J.W.F. Robertson, C.G. Rodrigues, V.M. Stanford, K.A. Rubinson, O.V. Krasilnikov, J.J. Kasianowicz, Proc. Natl. Acad. Sci. U.S.A. 104, 8207 (2007)
G. Baaken, I. Halimeh, L. Bacri, J. Pelta, A. Oukhaled, J.C. Behrends, ACS Nano 9, 6443 (2015)
O.V. Krasilnikov, C.G. Rodrigues, S.M. Bezrukov, Phys. Rev. Lett. 97, 18301 (2006)
A. Siria, M.L. Bocquet, L. Bocquet, Nat. Rev. Chem. 1, 0091 (2017)
Author information
Authors and Affiliations
Corresponding author
Additional information
This publication is dedicated to Loïc Auvray’s memory.
Rights and permissions
About this article
Cite this article
Roman, J., Le Pioufle, B., Auvray, L. et al. From current trace to the understanding of confined media. Eur. Phys. J. E 41, 99 (2018). https://doi.org/10.1140/epje/i2018-11709-5
Received:
Accepted:
Published:
DOI: https://doi.org/10.1140/epje/i2018-11709-5