Skip to main content
Log in

Mutational landscape of prostate tumors revealed by whole-exome sequencing

  • Short Communications
  • Published:
Russian Journal of Genetics Aims and scope Submit manuscript

Abstract

The results of the whole-exome DNA sequencing of eight prostate adenocarcinoma patients are presented. DNA was isolated from the peripheral blood as well as healthy and tumor prostate tissue from each patient. Bioinformatics analysis was conducted and the most significant mutations in prostate cancer patients were revealed. The obtained data could be important for understanding of the molecular mechanisms of prostate cancer pathogenesis and facilitate development of new approaches for treatment of the disease.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  1. Kaprin, A.D., Starinskii, V.V., and Petrova, G.V., Zlokachestvennye novoobrazovaniya v Rossii v 2013 godu (zabolevaemost’ i smertnost’) (Malignancies in Russia in 2013 (Morbidity and Mortality)), Moscow: Mosk. Nauchno-Issled. Onkol. Inst. im. P.A. Gertsena, 2015.

    Google Scholar 

  2. Taylor, B.S., Schultz, N., Hieronymus, H., et al., Integrative genomic profiling of human prostate cancer, Cancer Cell, 2010, vol. 18, no. 1 pp. 11–22. doi 10.1016.j.ccr.2010.05.026

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Tomlins, S.A., Bjartell, A., Chinnaiyan, A.M., et al., ETS gene fusions in prostate cancer: from discovery to daily clinical practice, Eur. Urol., 2009, vol. 56, no. 2 pp. 275–286. doi 10.1016/j.eururo.2009.04.036

    Article  CAS  PubMed  Google Scholar 

  4. He, W.W., Sciavolino, P.J., Wing, J., et al., A novel human prostate-specific, androgen-regulated homeobox gene (NKX3. 1) that maps to 8p21, a region frequently deleted in prostate cancer, Genomics, 1997, vol. 43, no. 1 pp. 69–77. doi 10.1006/geno.1997.4715

    Article  CAS  PubMed  Google Scholar 

  5. Lapointe, J., Li, C., Giacomini, C.P., et al., Genomic profiling reveals alternative genetic pathways of prostate tumorigenesis, Cancer Res., 2007, vol. 67, pp. 8504–8510. doi 10.1158/0008-5472.CAN-07-0673

    Article  CAS  PubMed  Google Scholar 

  6. Thangapazham, R., Saenz, F., Katta, S., et al., Loss of the NKX3.1 tumor suppressor promotes the TMPRSS2-ERG fusion gene expression in prostate cancer, BMC Cancer, 2014, vol. 14, pp. 16. doi 10.1186/1471-2407-14-16

    Article  PubMed  PubMed Central  Google Scholar 

  7. Barbieri, C.E., Baca, S.C., Lawrence, M.S., et al., Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer, Nat. Genet., 2012, vol. 44, no. 6 pp. 685–689. doi 10.1038/ng.2279

    CAS  PubMed  Google Scholar 

  8. Li, H. and Durbin, R., Fast and accurate short read alignment with Burrows—Wheeler transform, Bioinformatics, 2009, vol. 25, no. 14 pp. 1754–1760. doi 10.1093/bioinformatics/btp324

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. DePristo, M.A., Banks, E., Poplin, R., et al., A framework for variation discovery and genotyping using nextgeneration DNA sequencing data, Nat. Genet., 2011, vol. 43, no. 5 pp. 491–498. doi 10.1038/ng.806

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Yang, H. and Wang, K., Genomic variant annotation and prioritization with ANNOVAR and wANNOVAR, Nat. Protoc., 2015, vol. 10, no. 10 pp. 1556–1566. doi 10.1038/nprot.2015.105

    Article  CAS  PubMed  Google Scholar 

  11. Kircher, M., Witten, D.M., Jain, P., et al., A general framework for estimating the relative pathogenicity of human genetic variants, Nat. Genet., 2014, vol. 46, no. 3 pp. 310–315. doi 10.1038/ng.2892

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Karolczak-Bayatti, M., Loughney, A.D., Robson, S.C., and Europe-Finner, G.N., Epigenetic modulation of the protein kinase A RIIa (PRKAR2A) gene by histone deacetylases 1 and 2 in human smooth muscle cells, J. Cell. Mol. Med., 2011, vol. 15, no. 1 pp. 94–108. 00927.x doi 10.1111/j.1582-4934.2009

    Article  CAS  PubMed  Google Scholar 

  13. Chernogubova, E.A., Braslavskaya, I.V., and Golikov, A.Yu., The role of serine proteases in the pathogenesis of prostate cancer, Vestn. Yuzhn. Nauchn. Tsentra Ross. Akad. Nauk, 2009, vol. 5, no. 1 pp. 81–93.

    Google Scholar 

  14. Chugh, S., Gnanapragassam, V.S., Jain, M., et al., Pathobiological implications of mucin glycans in cancer: sweet poison and novel targets, Biochim. Biophys. Acta, Rev. Cancer, 2015, vol. 1856, no. 2, pp. 211–225.

    Article  CAS  Google Scholar 

  15. Haridas, D., Chakraborty, S., Ponnusamy, M.P., et al., Pathobiological implications of MUC16 expression in pancreatic cancer, PLoS One, 2011, vol. 6, no. 10. e26839.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Lakshmanan, I., Ponnusamy, M.P., Das, S., et al., MUC16 induced rapid G2/M transition via interactions with JAK2 for increased proliferation and antiapoptosis in breast cancer cells, Oncogene, 2012, vol. 31, no. 7 pp. 805–817.

    Article  CAS  PubMed  Google Scholar 

  17. Chen, S.H., Hung, W.C., Wang, P., et al., Mesothelin binding to CA125/MUC16 promotes pancreatic cancer cell motility and invasion via MMP-7 activation, Sci. Rep., 2013, vol. 3, p. 1870.

    PubMed  PubMed Central  Google Scholar 

  18. Turner, D., Findlay, V., Darby Kirven, A., tet al., Global gene expression analysis identifies PDEF transcriptional networks regulating cell migration during cancer progression, {iMol. Biol. Cell}, 2008, vol. 19(9), pp. 3745–3757.

    CAS  Google Scholar 

  19. Grasso, C.S., Wu, Y.M., Robinson, D.R., et al., The mutational landscape of lethal castration-resistant prostate cancer, Nature, 2012, vol. 487, no. 7406 pp. 239–243.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Lindberg, J., Mills, I.G., Klevebring, D., et al., The mitochondrial and autosomal mutation landscapes of prostate cancer, Eur. Urol., 2013, vol. 63, no. 4 pp. 702–708.

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to I. R. Gilyazova.

Additional information

Original Russian Text © I.R. Gilyazova, M.A. Yankina, G.B. Kunsbaeva, E.A. Klimentova, A.A. Izmaylov, V.N. Pavlov, E.K. Khusnutdinova, 2016, published in Genetika, 2016, Vol. 52, No. 9, pp. 1103–1108.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Gilyazova, I.R., Yankina, M.A., Kunsbaeva, G.B. et al. Mutational landscape of prostate tumors revealed by whole-exome sequencing. Russ J Genet 52, 999–1003 (2016). https://doi.org/10.1134/S1022795416090052

Download citation

  • Received:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S1022795416090052

Keywords

Navigation