Skip to main content
Log in

Genetic instability of probiotic characteristics in the Bifidobacterium longum subsp. longum B379M strain during cultivation and maintenance

  • Genetics of Microorganisms
  • Published:
Russian Journal of Genetics Aims and scope Submit manuscript

Abstract

The stability of inheritance of several genes in the Russian commercial strain Bifidobacterium lon- gum subsp. longum B379M during cultivation and maintenance under laboratory conditions has been studied. The examined genes code for probiotic characteristics, such as utilization of several sugars (lacA2 gene, encoding β-galactosidase; ara gene, encoding arabinosidase; and galA gene, encoding arabinogalactan endo-β-galactosidase); synthesis of bacteriocins (lans gene, encoding lanthionine synthetase); and mobile gene tet(W) of resistance to the antibiotic tetracycline. The other gene families studied include the genes responsible for signal transduction and adaptation to stress conditions in the majority of bacteria (serine/threonine protein kinases and the toxin-antitoxin systems of MazEF and RelBE families) and transcription regulators (genes encoding WhiB family proteins). Genomic DNA was analyzed by PCR using specially selected primers. A loss of the genes galA and tet(W) has been shown. It is proposed to expand the requirements on probiotic strains, namely, to control retention of the key probiotic genes using molecular biological methods.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

References

  1. Shestakov, S.V., Metagenomics of Human Microbiom, “Usp. Sovrem. Biol., 2010, vol. 130, no. 6, pp. 531–543.

    Google Scholar 

  2. Stanton, C., Ross, R.P., Fitzgerald, G.F., and Van Sinderen, D., Fermented Functional Foods Based on Probiotics and Their Biogenic Metabolites, Curr. Opin. Biotech., 2005, vol. 16, pp. 198–203.

    Article  PubMed  CAS  Google Scholar 

  3. Huis, I.T., Veld, J.H., and Shortt, C., Selection Criteria for Probiotic Microorganisms, vol. 219 of International Congress and Symposium Series, London: Royal Society of Medicine Press, 1996.

    Google Scholar 

  4. Kosin, B. and Rakshit, S.K., Criteria for Production of Probiotics, Food Technol. Biotechnol., 2006, vol. 44, no. 3, pp. 371–379.

    Google Scholar 

  5. Van de Guchte, M., Serror, P., Chervaux, C., et al., Stress Responses in Lactic Acid Bacteria, Antonie van Leeuwenhoek, 2002, vol. 82, pp. 187–216.

    Article  PubMed  Google Scholar 

  6. Vaughan, E.E., Heilig, H.G., Ben-Amor, K., and de Vos, W.M., Diversity, Vitality and Activities of Intestinal Lactic Acid Bacteria and Bifidobacteria Assessed by Molecular Approaches, FEMS Microbiol. Rev., 2005, vol. 29, pp. 477–490.

    Article  PubMed  CAS  Google Scholar 

  7. Briczinski, E.P., Loquasto, J.R., Barrangou, R., et al., Strain-Specific Genotyping of Bifidobacterium animalis subsp. lactis by Using Single-Nucleotide Polymorphisms, Insertions, and Deletions, Appl. Environ. Microbiol., 2009, vol. 75, no. 23, pp. 7501–7508.

    Article  PubMed  CAS  Google Scholar 

  8. Regnault, B., Grimont, F., and Grimont, P.A.D., Universal Ribotyping Method Using a Chemically Labeled Oligonucleotide Probe Mixture, Res. Microbiol., 1997, vol. 148, no. 8, pp. 649–659.

    Article  PubMed  CAS  Google Scholar 

  9. Matsuki, T., Watanabe, K., and Fujimoto, J., Quantitative PCR with 16S rRNA-Gene-Targeted Species-Specific Primers for Analysis of Human Intestinal Bifidobacteria, Appl. Environ. Microbiol., 2004, vol. 70, no. 1, pp. 167–173.

    Article  PubMed  CAS  Google Scholar 

  10. Klijn, A., Mercenier, A., and Arigoni, F., Lessons from the Genomes of Bifidobacteria, FEMS Microbiol. Rev., 2005, vol. 29, pp. 491–509.

    Article  PubMed  CAS  Google Scholar 

  11. Hinz, S.W.A., Pastink, M.I., van den Broek, L.A.M., et al. Bifidobacterium longum Endogalactanase Liberates Galactotriose from Type I Galactans, Appl. Environ. Microbiol., 2005, vol. 71, no. 9, pp. 5501–5510.

    Article  PubMed  CAS  Google Scholar 

  12. Lee, J-H., Karamychev, V.N., Kozyavkin, S.A., et al., Comparative Genomic Analysis of the Gut Bacterium Bifidobacterium longum Reveals Loci Susceptible to Deletion during Pure Culture Growth, BMC Genomics, 2008, vol. 9, no. 247, pp. 1–16.

    Google Scholar 

  13. Gao, B., Paramanathan, R., Radhey, S.G., Signature Proteins That Are Distinctive Characteristics of Actinobacteria and Their Subgroups, Antonie van Leeuwenhoek, 2006, vol. 90, pp. 69–91.

    Article  PubMed  CAS  Google Scholar 

  14. Geiman, D.E., Raghunand, T.R., Agarwal, N., and Bishai, W.R., Differential Gene Expression in Response to Exposure to Antimycobacterial Agents and Other Stress Conditions among Seven Mycobacterium tuberculosis whiB-Like Genes, Antimicrob. Agents Chemother., 2006, vol. 50, pp. 2836–2841.

    Article  PubMed  CAS  Google Scholar 

  15. Averina, O.V., Zakharevich, N.V., and Danilenko, V.N., Identification and Characterization of WhiB-Like Proteins of the Bifidobacteria Genus, Anaerobe, 2012, vol. 5, no. 4, pp. 421–429.

    Article  Google Scholar 

  16. Bifidobacteria: Genomics and Molecular Aspects, Mayo, B. and Sinderen, D.V., Eds., 2010.

  17. Moubareck, C., Gavini, F., Vaugien, L., et al., Antimicrobial Susceptibility of Bifidobacteria, J. Antimicrob. Chemother., 2005, vol. 55, pp. 38–44.

    Article  PubMed  CAS  Google Scholar 

  18. Masco, L., Van Hoorde, K., De Brandt, E., et al., Antimicrobial Susceptibility of Bifidobacterium Strains from Humans, Animals and Probiotic Products, J. Antimicrob. Chemother., 2006, vol. 58, pp. 85–94.

    Article  PubMed  CAS  Google Scholar 

  19. Ammor, M.S., Florez, A.B., Alvarez-Martin, P., et al., Analysis of Tetracycline Resistance tet(W) Genes and Their Flanking Sequences in Intestinal Bifidobacterium Species, J. Antimicrob. Chemother., 2008, vol. 62, no. 4, pp. 688–693.

    Article  PubMed  CAS  Google Scholar 

  20. Zakharevich, N.V., Osolodkin, D.I., Artamonova, I.I., et al., Signatures of the ATP Binding Pocket as a Basis for Structural Classification of the Serine/Threonine Protein Kinases of Gram-Positive Bacteria, Proteins: Struct., Funct. Bioinf., in press (DOI10.1002/prot.24032).

  21. Danilenko, V.N., Osolodkin, D.I., Lakatosh, S.A., and Preobrazhenskaya, M.N., Bacterial Eukaryotic Type Serine-Threonine Protein Kinases: From Structural Biology to Targeted Anti-Infective Drug Design, Curr. Topics Medic. Chem., 2011, vol. 11, pp. 1352–1369.

    Article  CAS  Google Scholar 

  22. Nezametdinova, V.Z., Alekseeva, M.G., Mironcheva, T.A., and Danilenko, V.N., Structural and Functional Characterization of Eukaryotic Type Serine-Threonine Protein Kinases in the Bifidobacterium longum B379M Strain, Abstracts of 2nd International Congress—Partnering and Exhibition on Biotechnology and Bioenergy, Vasilov, R.G., Ed., Moscow: Copyring, 2010.

    Google Scholar 

  23. Prozorov, A.A. and Danilenko, V.N., Toxin-Antitoxin Systems in Bacteria: Apoptotic Tools or Metabolic Regulators?, Mikrobiologiya, 2010, vol. 79, no. 2, pp. 147–159.

    Google Scholar 

  24. Nogueira, T., Rankin, D.J., Touchon, M., et al., Horizontal Gene Transfer of the Secretome Drives the Evolution of Bacterial Cooperation and Virulence, Curr. Biol., 2009, vol. 19–20, p. 1683.

    Article  Google Scholar 

  25. FAO/WHO: Report of a Joint FAO/WHO Working Group on Drafting Guidelines for the Evaluation of Probiotics in Food, 2002.

  26. Arumugam, M., Raes, J., Pelletier, E., et al., Enterotypes of the Human Gut Microbiome, Nature, 2011, vol. 473, no. 12, pp. 174–180.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to O. V. Averina.

Additional information

Original Russian Text © O.V. Averina, V.Z. Nezametdinova, M.G. Alekseeva, V.N. Danilenko, 2012, published in Genetika, 2012, Vol. 48, No. 11, pp. 1287–1296.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Averina, O.V., Nezametdinova, V.Z., Alekseeva, M.G. et al. Genetic instability of probiotic characteristics in the Bifidobacterium longum subsp. longum B379M strain during cultivation and maintenance. Russ J Genet 48, 1103–1111 (2012). https://doi.org/10.1134/S1022795412110026

Download citation

  • Received:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S1022795412110026

Keywords

Navigation