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Differential expression analysis by cDNA-AFLP of Solanum torvum upon Verticillium dahliae infection

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Abstract

Differentially expressed genes in eggplant (Solanum torvum SW) during root infection with Verticillium dahliae were identified using cDNA-amplified restriction fragment polymorphism (cDNA-AFLP) approach. A total of 140 differential transcript-derived fragments (TDFs) were isolated, in which 79 TDFs were up-regulated, and 34 TDFs were down-regulated after inoculation. BLAST analysis showed that 51% of these TDFs belonged to function-known genes. Further analysis on six TDFs (TDF11, TDF14, TDF16, TDF25, TDF26, and TDF39), which represented different expression patterns, was done. TDF11, encoding cytochrome c oxidase, appeared in 24 h after inoculation; TDF14, encoding retrotransposon protein, disappeared in 6 h after treatment; TDF16, encoding bZIP transcription factor, began to express only in 72 h after inoculation; TDF25, encoding senescence-associated protein, was present between 6 and 24 h; TDF26, encoding cytochrome P450 monooxygenase, and TDF39, encoding metallophosphoesterase, were up-regulated during the entire period after inoculation. Results obtained demonstrated that the defense of S. torvum against V. dahliae is a complex multigene process, which studying is helpful for better understanding verticillium wilt resistance of S. torvum.

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Abbreviations

TDF:

transcript-derived fragments

V. wilt:

Verticillium wilt

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Authors and Affiliations

  1. State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, P.R. China

    Z. Wang, F. Zhang & Q. Yang

  2. Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Jiangsu, Nanjing, 210014, P.R. China

    Z. Wang & J. L. Guo

  3. Institute of Nuclear and Biotechnology, Xinjiang Academy of Agricultural Sciences, Urmuqi, 830052, P.R. China

    Q. S. Huang & L. P. Huang

Authors
  1. Z. Wang
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  2. J. L. Guo
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  3. F. Zhang
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  4. Q. S. Huang
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  5. L. P. Huang
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  6. Q. Yang
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Correspondence to Q. Yang.

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Wang, Z., Guo, J.L., Zhang, F. et al. Differential expression analysis by cDNA-AFLP of Solanum torvum upon Verticillium dahliae infection. Russ J Plant Physiol 57, 676–684 (2010). https://doi.org/10.1134/S1021443710050110

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  • DOI: https://doi.org/10.1134/S1021443710050110

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