The title complex, [Cu(C12H18N2O8)(H2O)]·2H2O, crystallizes with the tetradentate ethylenediaminetetraacetic acid (edta) diester derivative and one water molecule forming a pyramidal environment. The vacant site of the octahedral complex is remotely associated with an O atom of one of the carbonyl atoms of the edta derivative.
Supporting information
CCDC reference: 298553
Key indicators
- Single-crystal X-ray study
- T = 173 K
- Mean (C-C) = 0.005 Å
- R factor = 0.033
- wR factor = 0.072
- Data-to-parameter ratio = 12.4
checkCIF/PLATON results
No syntax errors found
Alert level C
CRYSC01_ALERT_1_C The word below has not been recognised as a standard
identifier.
deep
PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ?
PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.05 Ratio
PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.46 Ratio
PLAT230_ALERT_2_C Hirshfeld Test Diff for O3 - C8 .. 5.64 su
PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for O2
PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 2
H2 O
Alert level G
REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is
correct. If it is not, please give the correct count in the
_publ_section_exptl_refinement section of the submitted CIF.
From the CIF: _diffrn_reflns_theta_max 26.00
From the CIF: _reflns_number_total 3207
Count of symmetry unique reflns 1889
Completeness (_total/calc) 169.77%
TEST3: Check Friedels for noncentro structure
Estimate of Friedel pairs measured 1318
Fraction of Friedel pairs measured 0.698
Are heavy atom types Z>Si present yes
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
7 ALERT level C = Check and explain
1 ALERT level G = General alerts; check
2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
3 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
2 ALERT type 4 Improvement, methodology, query or suggestion
checkCIF publication errors
Alert level A
PUBL024_ALERT_1_A The number of authors is greater than 5.
Please specify the role of each of the co-authors
for your paper.
| Author Response: CE: crystallographer; LvK: student who prepared and crystallised the
title compound; MWB, HJA: supervisors of LvK; EPJ, PS, MWB: Project leaders.
|
1 ALERT level A = Data missing that is essential or data in wrong format
0 ALERT level G = General alerts. Data that may be required is missing
Data collection: COLLECT (Nonius, 1998); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: X-SEED.
Aqua[
N,
N'-bis(methoxycarbonylmethyl)-3,6-diazaoctanedioato]copper(II) dihydrate
top
Crystal data top
[Cu(C12H18N2O8)(H2O)]·2H2O | F(000) = 454 |
Mr = 435.87 | Dx = 1.578 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 1895 reflections |
a = 7.5208 (15) Å | θ = 1.0–27.5° |
b = 13.158 (3) Å | µ = 1.25 mm−1 |
c = 9.5684 (19) Å | T = 173 K |
β = 104.31 (3)° | Prism, deep-blue |
V = 917.5 (4) Å3 | 0.37 × 0.25 × 0.12 mm |
Z = 2 | |
Data collection top
Nonius KappaCCD diffractometer | 3207 independent reflections |
Radiation source: fine-focus sealed tube | 2958 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
φ and ω scans to fill Ewald sphere | θmax = 26.0°, θmin = 2.2° |
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | h = −9→8 |
Tmin = 0.70, Tmax = 0.86 | k = −16→14 |
4595 measured reflections | l = −7→11 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.033 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.072 | w = 1/[σ2(Fo2) + (0.0345P)2 + 0.0434P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
3207 reflections | Δρmax = 0.40 e Å−3 |
259 parameters | Δρmin = −0.29 e Å−3 |
10 restraints | Absolute structure: Flack (1983) |
Primary atom site location: heavy-atom method | Absolute structure parameter: 0.019 (14) |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cu1 | 0.23557 (4) | 0.25030 (4) | 0.00962 (3) | 0.02389 (11) | |
C2 | 0.5768 (3) | 0.2594 (4) | −0.0698 (3) | 0.0307 (7) | |
H2A | 0.6768 | 0.3099 | −0.0593 | 0.037* | |
H2B | 0.5885 | 0.2108 | −0.1461 | 0.037* | |
N1 | 0.3977 (3) | 0.3126 (2) | −0.1159 (3) | 0.0268 (6) | |
O4 | 0.0183 (3) | 0.32292 (18) | −0.0974 (2) | 0.0305 (5) | |
O1 | 0.4575 (3) | 0.18617 (19) | 0.1147 (2) | 0.0329 (5) | |
O2 | 0.2076 (3) | 0.1354 (2) | −0.2088 (3) | 0.0469 (7) | |
N2 | 0.2834 (3) | 0.4052 (2) | 0.1303 (3) | 0.0241 (6) | |
O3 | 0.1949 (4) | 0.1715 (2) | −0.4398 (3) | 0.0545 (7) | |
C7 | 0.3275 (5) | 0.3967 (3) | 0.2864 (4) | 0.0347 (8) | |
H7A | 0.4366 | 0.3525 | 0.3176 | 0.042* | |
H7B | 0.2240 | 0.3626 | 0.3142 | 0.042* | |
C4 | 0.3165 (5) | 0.2962 (3) | −0.2721 (4) | 0.0344 (8) | |
H4A | 0.4127 | 0.3046 | −0.3255 | 0.041* | |
H4B | 0.2204 | 0.3479 | −0.3078 | 0.041* | |
C5 | 0.2338 (5) | 0.1918 (3) | −0.3003 (4) | 0.0376 (9) | |
O5 | 0.7552 (3) | 0.1706 (2) | 0.1334 (3) | 0.0427 (6) | |
O9 | 0.1030 (3) | 0.17133 (19) | 0.1246 (3) | 0.0333 (6) | |
H91 | −0.006 (3) | 0.188 (2) | 0.111 (4) | 0.040* | |
H92 | 0.111 (4) | 0.1074 (14) | 0.127 (4) | 0.040* | |
O8 | −0.1329 (3) | 0.46735 (18) | −0.1410 (3) | 0.0417 (6) | |
O6 | 0.4207 (4) | 0.4810 (2) | 0.5079 (3) | 0.0529 (7) | |
O7 | 0.3460 (4) | 0.5790 (2) | 0.3125 (3) | 0.0559 (8) | |
C6 | 0.6001 (4) | 0.2027 (3) | 0.0701 (3) | 0.0279 (7) | |
C12 | −0.0084 (4) | 0.4148 (3) | −0.0673 (3) | 0.0283 (7) | |
C10 | 0.4160 (4) | 0.4230 (3) | −0.0817 (4) | 0.0323 (8) | |
H10A | 0.3051 | 0.4590 | −0.1368 | 0.039* | |
H10B | 0.5231 | 0.4505 | −0.1122 | 0.039* | |
C11 | 0.4404 (5) | 0.4428 (3) | 0.0780 (4) | 0.0318 (8) | |
H11A | 0.5540 | 0.4090 | 0.1326 | 0.038* | |
H11B | 0.4545 | 0.5167 | 0.0964 | 0.038* | |
C13 | 0.1123 (4) | 0.4618 (3) | 0.0697 (4) | 0.0340 (8) | |
H13A | 0.1441 | 0.5321 | 0.0481 | 0.041* | |
H13B | 0.0408 | 0.4657 | 0.1436 | 0.041* | |
C9 | 0.3655 (5) | 0.4960 (3) | 0.3668 (4) | 0.0353 (8) | |
C8 | 0.1023 (7) | 0.0735 (5) | −0.4823 (6) | 0.0853 (17) | |
H8A | 0.0783 | 0.0653 | −0.5871 | 0.128* | |
H8B | −0.0141 | 0.0720 | −0.4536 | 0.128* | |
H8C | 0.1811 | 0.0180 | −0.4344 | 0.128* | |
O11 | 0.8627 (8) | 0.3366 (3) | 0.3498 (5) | 0.1052 (14) | |
H111 | 0.813 (9) | 0.335 (5) | 0.418 (5) | 0.126* | |
H112 | 0.859 (9) | 0.283 (3) | 0.306 (6) | 0.126* | |
O10 | −0.2262 (7) | 0.2879 (4) | −0.3848 (4) | 0.1058 (16) | |
H101 | −0.219 (9) | 0.325 (4) | −0.316 (5) | 0.127* | |
H102 | −0.265 (10) | 0.230 (2) | −0.380 (7) | 0.127* | |
C14 | 0.4641 (7) | 0.5707 (4) | 0.5992 (4) | 0.0605 (12) | |
H14A | 0.5024 | 0.5498 | 0.7005 | 0.091* | |
H14B | 0.3553 | 0.6142 | 0.5848 | 0.091* | |
H14C | 0.5639 | 0.6085 | 0.5736 | 0.091* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cu1 | 0.01935 (16) | 0.02059 (18) | 0.03275 (19) | 0.0005 (2) | 0.00838 (12) | 0.0034 (2) |
C2 | 0.0244 (13) | 0.033 (2) | 0.0393 (16) | 0.0009 (18) | 0.0169 (11) | 0.0021 (19) |
N1 | 0.0297 (13) | 0.0230 (15) | 0.0306 (15) | 0.0005 (12) | 0.0129 (11) | 0.0015 (12) |
O4 | 0.0244 (11) | 0.0217 (13) | 0.0404 (13) | 0.0032 (10) | −0.0014 (9) | −0.0025 (10) |
O1 | 0.0205 (10) | 0.0378 (14) | 0.0435 (14) | 0.0038 (10) | 0.0138 (9) | 0.0114 (12) |
O2 | 0.0627 (17) | 0.0366 (16) | 0.0413 (16) | −0.0125 (14) | 0.0125 (13) | −0.0025 (13) |
N2 | 0.0239 (12) | 0.0209 (14) | 0.0265 (15) | 0.0010 (11) | 0.0042 (10) | −0.0007 (11) |
O3 | 0.0694 (17) | 0.059 (2) | 0.0336 (16) | −0.0091 (15) | 0.0094 (13) | −0.0123 (14) |
C7 | 0.0398 (18) | 0.033 (2) | 0.031 (2) | −0.0009 (16) | 0.0089 (15) | 0.0002 (15) |
C4 | 0.041 (2) | 0.036 (2) | 0.0283 (19) | −0.0021 (17) | 0.0124 (15) | 0.0032 (15) |
C5 | 0.038 (2) | 0.040 (2) | 0.036 (2) | 0.0077 (18) | 0.0121 (16) | −0.0032 (18) |
O5 | 0.0202 (12) | 0.0593 (18) | 0.0500 (16) | 0.0076 (12) | 0.0115 (10) | 0.0118 (13) |
O9 | 0.0209 (11) | 0.0281 (14) | 0.0546 (16) | 0.0001 (10) | 0.0164 (11) | 0.0077 (12) |
O8 | 0.0292 (12) | 0.0256 (14) | 0.0604 (17) | 0.0066 (11) | −0.0076 (11) | 0.0000 (12) |
O6 | 0.086 (2) | 0.0474 (18) | 0.0215 (13) | −0.0055 (15) | 0.0058 (12) | 0.0002 (12) |
O7 | 0.099 (2) | 0.0322 (17) | 0.0313 (15) | −0.0053 (15) | 0.0066 (14) | −0.0003 (12) |
C6 | 0.0214 (16) | 0.0284 (18) | 0.0356 (19) | −0.0014 (13) | 0.0104 (13) | −0.0036 (14) |
C12 | 0.0230 (16) | 0.0238 (19) | 0.039 (2) | −0.0008 (14) | 0.0089 (14) | −0.0015 (15) |
C10 | 0.0328 (17) | 0.028 (2) | 0.038 (2) | −0.0048 (15) | 0.0126 (14) | 0.0023 (15) |
C11 | 0.0360 (18) | 0.0196 (18) | 0.038 (2) | −0.0060 (14) | 0.0065 (14) | −0.0043 (14) |
C13 | 0.0328 (17) | 0.030 (2) | 0.0370 (19) | 0.0025 (15) | 0.0044 (14) | −0.0049 (16) |
C9 | 0.0366 (18) | 0.038 (2) | 0.0297 (19) | −0.0043 (16) | 0.0057 (14) | 0.0022 (16) |
C8 | 0.087 (4) | 0.098 (5) | 0.067 (4) | −0.016 (3) | 0.011 (3) | −0.021 (3) |
O11 | 0.160 (4) | 0.065 (3) | 0.091 (3) | 0.006 (3) | 0.032 (3) | −0.005 (2) |
O10 | 0.125 (3) | 0.134 (4) | 0.056 (2) | −0.046 (3) | 0.019 (2) | −0.031 (2) |
C14 | 0.091 (3) | 0.057 (3) | 0.032 (2) | −0.010 (3) | 0.012 (2) | −0.011 (2) |
Geometric parameters (Å, º) top
Cu1—O1 | 1.918 (2) | O5—C6 | 1.247 (4) |
Cu1—O2 | 2.545 (3) | O9—H91 | 0.827 (17) |
Cu1—O4 | 1.951 (2) | O9—H92 | 0.844 (18) |
Cu1—O9 | 1.956 (2) | O8—C12 | 1.235 (4) |
Cu1—N1 | 2.080 (3) | O6—C9 | 1.326 (4) |
Cu1—N2 | 2.326 (3) | O6—C14 | 1.456 (5) |
C2—N1 | 1.485 (4) | O7—C9 | 1.203 (5) |
C2—C6 | 1.504 (5) | C12—C13 | 1.529 (5) |
C2—H2A | 0.9900 | C10—C11 | 1.516 (5) |
C2—H2B | 0.9900 | C10—H10A | 0.9900 |
N1—C4 | 1.484 (4) | C10—H10B | 0.9900 |
N1—C10 | 1.488 (4) | C11—H11A | 0.9900 |
O4—C12 | 1.270 (4) | C11—H11B | 0.9900 |
O1—C6 | 1.267 (4) | C13—H13A | 0.9900 |
O2—C5 | 1.201 (5) | C13—H13B | 0.9900 |
N2—C7 | 1.452 (4) | C8—H8A | 0.9800 |
N2—C13 | 1.476 (4) | C8—H8B | 0.9800 |
N2—C11 | 1.477 (4) | C8—H8C | 0.9800 |
O3—C5 | 1.321 (4) | O11—H111 | 0.83 (4) |
O3—C8 | 1.474 (6) | O11—H112 | 0.82 (4) |
C7—C9 | 1.508 (5) | O10—H101 | 0.81 (4) |
C7—H7A | 0.9900 | O10—H102 | 0.81 (4) |
C7—H7B | 0.9900 | C14—H14A | 0.9800 |
C4—C5 | 1.504 (5) | C14—H14B | 0.9800 |
C4—H4A | 0.9900 | C14—H14C | 0.9800 |
C4—H4B | 0.9900 | | |
| | | |
O1—Cu1—O4 | 176.58 (11) | O2—C5—O3 | 125.2 (4) |
O2—Cu1—O9 | 101.32 (10) | O2—C5—C4 | 124.6 (4) |
O2—Cu1—N2 | 154.03 (9) | O3—C5—C4 | 110.2 (4) |
O9—Cu1—N1 | 170.86 (12) | Cu1—O9—H91 | 113 (2) |
O9—Cu1—N2 | 102.95 (10) | Cu1—O9—H92 | 120 (2) |
O1—Cu1—O9 | 88.28 (10) | H91—O9—H92 | 110 (3) |
O4—Cu1—O9 | 94.48 (10) | C9—O6—C14 | 117.2 (3) |
O1—Cu1—N1 | 85.28 (9) | O5—C6—O1 | 123.1 (3) |
O4—Cu1—N1 | 92.20 (10) | O5—C6—C2 | 119.3 (3) |
O1—Cu1—N2 | 96.76 (10) | O1—C6—C2 | 117.5 (3) |
O4—Cu1—N2 | 80.68 (9) | O8—C12—O4 | 122.9 (3) |
N1—Cu1—N2 | 84.29 (10) | O8—C12—C13 | 118.0 (3) |
O1—Cu1—O2 | 93.07 (10) | O4—C12—C13 | 119.1 (3) |
O4—Cu1—O2 | 88.37 (9) | N1—C10—C11 | 111.7 (3) |
N1—Cu1—O2 | 72.61 (10) | N1—C10—H10A | 109.3 |
N1—C2—C6 | 113.3 (2) | C11—C10—H10A | 109.3 |
N1—C2—H2A | 108.9 | N1—C10—H10B | 109.3 |
C6—C2—H2A | 108.9 | C11—C10—H10B | 109.3 |
N1—C2—H2B | 108.9 | H10A—C10—H10B | 107.9 |
C6—C2—H2B | 108.9 | N2—C11—C10 | 112.1 (3) |
H2A—C2—H2B | 107.7 | N2—C11—H11A | 109.2 |
C4—N1—C2 | 110.4 (3) | C10—C11—H11A | 109.2 |
C4—N1—C10 | 110.9 (3) | N2—C11—H11B | 109.2 |
C2—N1—C10 | 111.5 (3) | C10—C11—H11B | 109.2 |
C4—N1—Cu1 | 111.7 (2) | H11A—C11—H11B | 107.9 |
C2—N1—Cu1 | 105.11 (19) | N2—C13—C12 | 114.1 (3) |
C10—N1—Cu1 | 107.07 (18) | N2—C13—H13A | 108.7 |
C12—O4—Cu1 | 120.4 (2) | C12—C13—H13A | 108.7 |
C6—O1—Cu1 | 116.6 (2) | N2—C13—H13B | 108.7 |
C5—O2—Cu1 | 103.7 (3) | C12—C13—H13B | 108.7 |
C7—N2—C13 | 113.4 (2) | H13A—C13—H13B | 107.6 |
C7—N2—C11 | 112.1 (2) | O7—C9—O6 | 123.3 (3) |
C13—N2—C11 | 113.0 (3) | O7—C9—C7 | 125.4 (3) |
C7—N2—Cu1 | 114.3 (2) | O6—C9—C7 | 111.3 (3) |
C13—N2—Cu1 | 103.57 (18) | O3—C8—H8A | 109.5 |
C11—N2—Cu1 | 99.42 (18) | O3—C8—H8B | 109.5 |
C5—O3—C8 | 115.3 (4) | H8A—C8—H8B | 109.5 |
N2—C7—C9 | 115.1 (3) | O3—C8—H8C | 109.5 |
N2—C7—H7A | 108.5 | H8A—C8—H8C | 109.5 |
C9—C7—H7A | 108.5 | H8B—C8—H8C | 109.5 |
N2—C7—H7B | 108.5 | H111—O11—H112 | 115 (4) |
C9—C7—H7B | 108.5 | H101—O10—H102 | 118 (4) |
H7A—C7—H7B | 107.5 | O6—C14—H14A | 109.5 |
N1—C4—C5 | 111.3 (3) | O6—C14—H14B | 109.5 |
N1—C4—H4A | 109.4 | H14A—C14—H14B | 109.5 |
C5—C4—H4A | 109.4 | O6—C14—H14C | 109.5 |
N1—C4—H4B | 109.4 | H14A—C14—H14C | 109.5 |
C5—C4—H4B | 109.4 | H14B—C14—H14C | 109.5 |
H4A—C4—H4B | 108.0 | | |
| | | |
Cu1—N1—C5—O2 | −26.8 (2) | Cu1—N1—C4—C5 | −39.8 (3) |
N1—C4—C5—O2 | 12.1 (5) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O10—H102···O7i | 0.81 (4) | 2.23 (3) | 3.024 (5) | 167 (6) |
O9—H92···O8i | 0.84 (2) | 1.85 (2) | 2.695 (4) | 178 (4) |
O9—H91···O5ii | 0.83 (2) | 1.88 (2) | 2.638 (3) | 153 (3) |
O11—H112···O5 | 0.82 (4) | 2.21 (3) | 2.981 (5) | 157 (7) |
Symmetry codes: (i) −x, y−1/2, −z; (ii) x−1, y, z. |