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The title complex, [Cu(C12H18N2O8)(H2O)]·2H2O, crystallizes with the tetra­dentate ethyl­enediamine­tetra­acetic acid (edta) diester derivative and one water mol­ecule forming a pyramidal environment. The vacant site of the octa­hedral complex is remotely associated with an O atom of one of the carbonyl atoms of the edta derivative.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536806001279/tk2001sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536806001279/tk2001Isup2.hkl
Contains datablock I

CCDC reference: 298553

Key indicators

  • Single-crystal X-ray study
  • T = 173 K
  • Mean [sigma](C-C) = 0.005 Å
  • R factor = 0.033
  • wR factor = 0.072
  • Data-to-parameter ratio = 12.4

checkCIF/PLATON results

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Alert level C CRYSC01_ALERT_1_C The word below has not been recognised as a standard identifier. deep PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.05 Ratio PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.46 Ratio PLAT230_ALERT_2_C Hirshfeld Test Diff for O3 - C8 .. 5.64 su PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for O2 PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 2 H2 O
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 26.00 From the CIF: _reflns_number_total 3207 Count of symmetry unique reflns 1889 Completeness (_total/calc) 169.77% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 1318 Fraction of Friedel pairs measured 0.698 Are heavy atom types Z>Si present yes
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 7 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion
checkCIF publication errors
Alert level A PUBL024_ALERT_1_A The number of authors is greater than 5. Please specify the role of each of the co-authors for your paper.
Author Response: CE: crystallographer; LvK: student who prepared and crystallised the title compound; MWB, HJA: supervisors of LvK; EPJ, PS, MWB: Project leaders.


1 ALERT level A = Data missing that is essential or data in wrong format 0 ALERT level G = General alerts. Data that may be required is missing

Computing details top

Data collection: COLLECT (Nonius, 1998); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: X-SEED.

Aqua[N,N'-bis(methoxycarbonylmethyl)-3,6-diazaoctanedioato]copper(II) dihydrate top
Crystal data top
[Cu(C12H18N2O8)(H2O)]·2H2OF(000) = 454
Mr = 435.87Dx = 1.578 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1895 reflections
a = 7.5208 (15) Åθ = 1.0–27.5°
b = 13.158 (3) ŵ = 1.25 mm1
c = 9.5684 (19) ÅT = 173 K
β = 104.31 (3)°Prism, deep-blue
V = 917.5 (4) Å30.37 × 0.25 × 0.12 mm
Z = 2
Data collection top
Nonius KappaCCD
diffractometer
3207 independent reflections
Radiation source: fine-focus sealed tube2958 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
φ and ω scans to fill Ewald sphereθmax = 26.0°, θmin = 2.2°
Absorption correction: multi-scan
(SCALEPACK; Otwinowski & Minor, 1997)
h = 98
Tmin = 0.70, Tmax = 0.86k = 1614
4595 measured reflectionsl = 711
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.072 w = 1/[σ2(Fo2) + (0.0345P)2 + 0.0434P]
where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
3207 reflectionsΔρmax = 0.40 e Å3
259 parametersΔρmin = 0.29 e Å3
10 restraintsAbsolute structure: Flack (1983)
Primary atom site location: heavy-atom methodAbsolute structure parameter: 0.019 (14)
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cu10.23557 (4)0.25030 (4)0.00962 (3)0.02389 (11)
C20.5768 (3)0.2594 (4)0.0698 (3)0.0307 (7)
H2A0.67680.30990.05930.037*
H2B0.58850.21080.14610.037*
N10.3977 (3)0.3126 (2)0.1159 (3)0.0268 (6)
O40.0183 (3)0.32292 (18)0.0974 (2)0.0305 (5)
O10.4575 (3)0.18617 (19)0.1147 (2)0.0329 (5)
O20.2076 (3)0.1354 (2)0.2088 (3)0.0469 (7)
N20.2834 (3)0.4052 (2)0.1303 (3)0.0241 (6)
O30.1949 (4)0.1715 (2)0.4398 (3)0.0545 (7)
C70.3275 (5)0.3967 (3)0.2864 (4)0.0347 (8)
H7A0.43660.35250.31760.042*
H7B0.22400.36260.31420.042*
C40.3165 (5)0.2962 (3)0.2721 (4)0.0344 (8)
H4A0.41270.30460.32550.041*
H4B0.22040.34790.30780.041*
C50.2338 (5)0.1918 (3)0.3003 (4)0.0376 (9)
O50.7552 (3)0.1706 (2)0.1334 (3)0.0427 (6)
O90.1030 (3)0.17133 (19)0.1246 (3)0.0333 (6)
H910.006 (3)0.188 (2)0.111 (4)0.040*
H920.111 (4)0.1074 (14)0.127 (4)0.040*
O80.1329 (3)0.46735 (18)0.1410 (3)0.0417 (6)
O60.4207 (4)0.4810 (2)0.5079 (3)0.0529 (7)
O70.3460 (4)0.5790 (2)0.3125 (3)0.0559 (8)
C60.6001 (4)0.2027 (3)0.0701 (3)0.0279 (7)
C120.0084 (4)0.4148 (3)0.0673 (3)0.0283 (7)
C100.4160 (4)0.4230 (3)0.0817 (4)0.0323 (8)
H10A0.30510.45900.13680.039*
H10B0.52310.45050.11220.039*
C110.4404 (5)0.4428 (3)0.0780 (4)0.0318 (8)
H11A0.55400.40900.13260.038*
H11B0.45450.51670.09640.038*
C130.1123 (4)0.4618 (3)0.0697 (4)0.0340 (8)
H13A0.14410.53210.04810.041*
H13B0.04080.46570.14360.041*
C90.3655 (5)0.4960 (3)0.3668 (4)0.0353 (8)
C80.1023 (7)0.0735 (5)0.4823 (6)0.0853 (17)
H8A0.07830.06530.58710.128*
H8B0.01410.07200.45360.128*
H8C0.18110.01800.43440.128*
O110.8627 (8)0.3366 (3)0.3498 (5)0.1052 (14)
H1110.813 (9)0.335 (5)0.418 (5)0.126*
H1120.859 (9)0.283 (3)0.306 (6)0.126*
O100.2262 (7)0.2879 (4)0.3848 (4)0.1058 (16)
H1010.219 (9)0.325 (4)0.316 (5)0.127*
H1020.265 (10)0.230 (2)0.380 (7)0.127*
C140.4641 (7)0.5707 (4)0.5992 (4)0.0605 (12)
H14A0.50240.54980.70050.091*
H14B0.35530.61420.58480.091*
H14C0.56390.60850.57360.091*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cu10.01935 (16)0.02059 (18)0.03275 (19)0.0005 (2)0.00838 (12)0.0034 (2)
C20.0244 (13)0.033 (2)0.0393 (16)0.0009 (18)0.0169 (11)0.0021 (19)
N10.0297 (13)0.0230 (15)0.0306 (15)0.0005 (12)0.0129 (11)0.0015 (12)
O40.0244 (11)0.0217 (13)0.0404 (13)0.0032 (10)0.0014 (9)0.0025 (10)
O10.0205 (10)0.0378 (14)0.0435 (14)0.0038 (10)0.0138 (9)0.0114 (12)
O20.0627 (17)0.0366 (16)0.0413 (16)0.0125 (14)0.0125 (13)0.0025 (13)
N20.0239 (12)0.0209 (14)0.0265 (15)0.0010 (11)0.0042 (10)0.0007 (11)
O30.0694 (17)0.059 (2)0.0336 (16)0.0091 (15)0.0094 (13)0.0123 (14)
C70.0398 (18)0.033 (2)0.031 (2)0.0009 (16)0.0089 (15)0.0002 (15)
C40.041 (2)0.036 (2)0.0283 (19)0.0021 (17)0.0124 (15)0.0032 (15)
C50.038 (2)0.040 (2)0.036 (2)0.0077 (18)0.0121 (16)0.0032 (18)
O50.0202 (12)0.0593 (18)0.0500 (16)0.0076 (12)0.0115 (10)0.0118 (13)
O90.0209 (11)0.0281 (14)0.0546 (16)0.0001 (10)0.0164 (11)0.0077 (12)
O80.0292 (12)0.0256 (14)0.0604 (17)0.0066 (11)0.0076 (11)0.0000 (12)
O60.086 (2)0.0474 (18)0.0215 (13)0.0055 (15)0.0058 (12)0.0002 (12)
O70.099 (2)0.0322 (17)0.0313 (15)0.0053 (15)0.0066 (14)0.0003 (12)
C60.0214 (16)0.0284 (18)0.0356 (19)0.0014 (13)0.0104 (13)0.0036 (14)
C120.0230 (16)0.0238 (19)0.039 (2)0.0008 (14)0.0089 (14)0.0015 (15)
C100.0328 (17)0.028 (2)0.038 (2)0.0048 (15)0.0126 (14)0.0023 (15)
C110.0360 (18)0.0196 (18)0.038 (2)0.0060 (14)0.0065 (14)0.0043 (14)
C130.0328 (17)0.030 (2)0.0370 (19)0.0025 (15)0.0044 (14)0.0049 (16)
C90.0366 (18)0.038 (2)0.0297 (19)0.0043 (16)0.0057 (14)0.0022 (16)
C80.087 (4)0.098 (5)0.067 (4)0.016 (3)0.011 (3)0.021 (3)
O110.160 (4)0.065 (3)0.091 (3)0.006 (3)0.032 (3)0.005 (2)
O100.125 (3)0.134 (4)0.056 (2)0.046 (3)0.019 (2)0.031 (2)
C140.091 (3)0.057 (3)0.032 (2)0.010 (3)0.012 (2)0.011 (2)
Geometric parameters (Å, º) top
Cu1—O11.918 (2)O5—C61.247 (4)
Cu1—O22.545 (3)O9—H910.827 (17)
Cu1—O41.951 (2)O9—H920.844 (18)
Cu1—O91.956 (2)O8—C121.235 (4)
Cu1—N12.080 (3)O6—C91.326 (4)
Cu1—N22.326 (3)O6—C141.456 (5)
C2—N11.485 (4)O7—C91.203 (5)
C2—C61.504 (5)C12—C131.529 (5)
C2—H2A0.9900C10—C111.516 (5)
C2—H2B0.9900C10—H10A0.9900
N1—C41.484 (4)C10—H10B0.9900
N1—C101.488 (4)C11—H11A0.9900
O4—C121.270 (4)C11—H11B0.9900
O1—C61.267 (4)C13—H13A0.9900
O2—C51.201 (5)C13—H13B0.9900
N2—C71.452 (4)C8—H8A0.9800
N2—C131.476 (4)C8—H8B0.9800
N2—C111.477 (4)C8—H8C0.9800
O3—C51.321 (4)O11—H1110.83 (4)
O3—C81.474 (6)O11—H1120.82 (4)
C7—C91.508 (5)O10—H1010.81 (4)
C7—H7A0.9900O10—H1020.81 (4)
C7—H7B0.9900C14—H14A0.9800
C4—C51.504 (5)C14—H14B0.9800
C4—H4A0.9900C14—H14C0.9800
C4—H4B0.9900
O1—Cu1—O4176.58 (11)O2—C5—O3125.2 (4)
O2—Cu1—O9101.32 (10)O2—C5—C4124.6 (4)
O2—Cu1—N2154.03 (9)O3—C5—C4110.2 (4)
O9—Cu1—N1170.86 (12)Cu1—O9—H91113 (2)
O9—Cu1—N2102.95 (10)Cu1—O9—H92120 (2)
O1—Cu1—O988.28 (10)H91—O9—H92110 (3)
O4—Cu1—O994.48 (10)C9—O6—C14117.2 (3)
O1—Cu1—N185.28 (9)O5—C6—O1123.1 (3)
O4—Cu1—N192.20 (10)O5—C6—C2119.3 (3)
O1—Cu1—N296.76 (10)O1—C6—C2117.5 (3)
O4—Cu1—N280.68 (9)O8—C12—O4122.9 (3)
N1—Cu1—N284.29 (10)O8—C12—C13118.0 (3)
O1—Cu1—O293.07 (10)O4—C12—C13119.1 (3)
O4—Cu1—O288.37 (9)N1—C10—C11111.7 (3)
N1—Cu1—O272.61 (10)N1—C10—H10A109.3
N1—C2—C6113.3 (2)C11—C10—H10A109.3
N1—C2—H2A108.9N1—C10—H10B109.3
C6—C2—H2A108.9C11—C10—H10B109.3
N1—C2—H2B108.9H10A—C10—H10B107.9
C6—C2—H2B108.9N2—C11—C10112.1 (3)
H2A—C2—H2B107.7N2—C11—H11A109.2
C4—N1—C2110.4 (3)C10—C11—H11A109.2
C4—N1—C10110.9 (3)N2—C11—H11B109.2
C2—N1—C10111.5 (3)C10—C11—H11B109.2
C4—N1—Cu1111.7 (2)H11A—C11—H11B107.9
C2—N1—Cu1105.11 (19)N2—C13—C12114.1 (3)
C10—N1—Cu1107.07 (18)N2—C13—H13A108.7
C12—O4—Cu1120.4 (2)C12—C13—H13A108.7
C6—O1—Cu1116.6 (2)N2—C13—H13B108.7
C5—O2—Cu1103.7 (3)C12—C13—H13B108.7
C7—N2—C13113.4 (2)H13A—C13—H13B107.6
C7—N2—C11112.1 (2)O7—C9—O6123.3 (3)
C13—N2—C11113.0 (3)O7—C9—C7125.4 (3)
C7—N2—Cu1114.3 (2)O6—C9—C7111.3 (3)
C13—N2—Cu1103.57 (18)O3—C8—H8A109.5
C11—N2—Cu199.42 (18)O3—C8—H8B109.5
C5—O3—C8115.3 (4)H8A—C8—H8B109.5
N2—C7—C9115.1 (3)O3—C8—H8C109.5
N2—C7—H7A108.5H8A—C8—H8C109.5
C9—C7—H7A108.5H8B—C8—H8C109.5
N2—C7—H7B108.5H111—O11—H112115 (4)
C9—C7—H7B108.5H101—O10—H102118 (4)
H7A—C7—H7B107.5O6—C14—H14A109.5
N1—C4—C5111.3 (3)O6—C14—H14B109.5
N1—C4—H4A109.4H14A—C14—H14B109.5
C5—C4—H4A109.4O6—C14—H14C109.5
N1—C4—H4B109.4H14A—C14—H14C109.5
C5—C4—H4B109.4H14B—C14—H14C109.5
H4A—C4—H4B108.0
Cu1—N1—C5—O226.8 (2)Cu1—N1—C4—C539.8 (3)
N1—C4—C5—O212.1 (5)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O10—H102···O7i0.81 (4)2.23 (3)3.024 (5)167 (6)
O9—H92···O8i0.84 (2)1.85 (2)2.695 (4)178 (4)
O9—H91···O5ii0.83 (2)1.88 (2)2.638 (3)153 (3)
O11—H112···O50.82 (4)2.21 (3)2.981 (5)157 (7)
Symmetry codes: (i) x, y1/2, z; (ii) x1, y, z.
 

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