Effects of Sequence and Solvation on the Temperature-Pressure Conformational Landscape of Proteinlike Heteropolymers

Silvina Matysiak and Payel Das
Phys. Rev. Lett. 111, 058103 – Published 1 August 2013
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Abstract

We study the role of sequence and solvation in shaping the temperature-pressure (T, P) conformational landscape of model heteropolymers with a coarse-grained model. We design foldable primarily hydrophobic sequences with fixed polar content in water at physiological conditions, which demonstrate (T, P) dependence of conformational stability similar to biological proteins. Inherent helicity emerges as a result of local polar-polar interactions in the sequences that mimic biological α helices. The helical propensity is reduced upon solvation and remains unaltered at cold T and high P, which is driven by the T-P induced changes of the hydration shell. Consequently, at nonphysiological conditions the weakening of hydrophobic interactions facilitates population of non-native, helical, compact conformations stabilized through direct nonlocal interactions between polar residues.

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  • Received 12 January 2013

DOI:https://doi.org/10.1103/PhysRevLett.111.058103

© 2013 American Physical Society

Authors & Affiliations

Silvina Matysiak1,* and Payel Das2,†

  • 1Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742, USA
  • 2Computational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, New York 10598, USA

  • *matysiak@umd.edu
  • daspa@us.ibm.com

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Issue

Vol. 111, Iss. 5 — 2 August 2013

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