Particle-based model to simulate the micromechanics of biological cells

P. Van Liedekerke, E. Tijskens, H. Ramon, P. Ghysels, G. Samaey, and D. Roose
Phys. Rev. E 81, 061906 – Published 3 June 2010

Abstract

This paper is concerned with addressing how biological cells react to mechanical impulse. We propose a particle based model to numerically study the mechanical response of these cells with subcellular detail. The model focuses on a plant cell in which two important features are present: (1) the cell’s interior liquidlike phase inducing hydrodynamic phenomena, and (2) the cell wall, a viscoelastic solid membrane that encloses the protoplast. In this particle modeling framework, the cell fluid is modeled by a standard smoothed particle hydrodynamics (SPH) technique. For the viscoelastic solid phase (cell wall), a discrete element method (DEM) is proposed. The cell wall hydraulic conductivity (permeability) is built in through a constitutive relation in the SPH formulation. Simulations show that the SPH-DEM model is in reasonable agreement with compression experiments on an in vitro cell and with analytical models for the basic dynamical modes of a spherical liquid filled shell. We have performed simulations to explore more complex situations such as relaxation and impact, thereby considering two cell types: a stiff plant type and a soft animal-like type. Their particular behavior (force transmission) as a function of protoplasm and cell wall viscosity is discussed. We also show that the mechanics during and after cell failure can be modeled adequately. This methodology has large flexibility and opens possibilities to quantify problems dealing with the response of biological cells to mechanical impulses, e.g., impact, and the prediction of damage on a (sub)cellular scale.

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  • Received 16 December 2009

DOI:https://doi.org/10.1103/PhysRevE.81.061906

©2010 American Physical Society

Authors & Affiliations

P. Van Liedekerke*, E. Tijskens, and H. Ramon

  • Department of BIOSYST, KULeuven, Leuven, Belgium

P. Ghysels, G. Samaey, and D. Roose

  • Department of Computer Science, KULeuven, Leuven, Belgium

  • *Corresponding author. Present address: Department of BIOSYST, KULeuven, Kasteelpark Arenberg 30, Leuven, Belgium; paul.vanliedekerke@biw.kuleuven.be

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Vol. 81, Iss. 6 — June 2010

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