Direct construction of mesoscopic models from microscopic simulations

Huan Lei, Bruce Caswell, and George Em Karniadakis
Phys. Rev. E 81, 026704 – Published 16 February 2010

Abstract

Starting from microscopic molecular-dynamics (MD) simulations of constrained Lennard-Jones (LJ) clusters (with constant radius of gyration Rg), we construct two mesoscopic models [Langevin dynamics and dissipative particle dynamics (DPD)] by coarse graining the LJ clusters into single particles. Both static and dynamic properties of the coarse-grained models are investigated and compared with the MD results. The effective mean force field is computed as a function of the intercluster distance, and the corresponding potential scales linearly with the number of particles per cluster and the temperature. We verify that the mean force field can reproduce the equation of state of the atomistic systems within a wide density range but the radial distribution function only within the dilute and the semidilute regime. The friction force coefficients for both models are computed directly from the time-correlation function of the random force field of the microscopic system. For high density or a large cluster size the friction force is overestimated and the diffusivity underestimated due to the omission of many-body effects as a result of the assumed pairwise form of the coarse-grained force field. When the many-body effect is not as pronounced (e.g., smaller Rg or semidilute system), the DPD model can reproduce the dynamic properties of the MD system.

  • Figure
  • Figure
  • Figure
  • Figure
  • Figure
  • Figure
  • Figure
9 More
  • Received 27 October 2009
  • Publisher error corrected 19 February 2010

DOI:https://doi.org/10.1103/PhysRevE.81.026704

©2010 American Physical Society

Corrections

19 February 2010

Erratum

Publisher's Note: Direct construction of mesoscopic models from microscopic simulations [Phys. Rev. E 81, 026704 (2010)]

Huan Lei, Bruce Caswell, and George Em Karniadakis
Phys. Rev. E 81, 029905 (2010)

Authors & Affiliations

Huan Lei1, Bruce Caswell2, and George Em Karniadakis1,*

  • 1Division of Applied Mathematics, Brown University, Providence, Rhode Island 02912, USA
  • 2Division of Engineering, Brown University, Providence, Rhode Island 02912, USA

  • *gk@dam.brown.edu

Article Text (Subscription Required)

Click to Expand

References (Subscription Required)

Click to Expand
Issue

Vol. 81, Iss. 2 — February 2010

Reuse & Permissions
Access Options
Author publication services for translation and copyediting assistance advertisement

Authorization Required


×
×

Images

×

Sign up to receive regular email alerts from Physical Review E

Log In

Cancel
×

Search


Article Lookup

Paste a citation or DOI

Enter a citation
×