Superstatistical and DNA sequence coding of the human genome

M. O. Costa, R. Silva, and D. H. A. L. Anselmo
Phys. Rev. E 106, 064407 – Published 12 December 2022

Abstract

In this work, by considering superstatistics we investigate the short-range correlations (SRCs) and the fluctuations in the distribution of lengths of strings of nucleotides. To this end, a stochastic model provides the distributions of the size of the exons based on the q-Gamma and inverse q-Gamma distributions. Specifically, we define a time series for exon sizes to investigate the SRC and the fluctuations through the superstatistics distributions. To test the model's viability, we use the Project Ensembl database of genes to extract the time evolution of exon sizes, calculated in terms of the number of base pairs (bp) in these biological databases. Our findings show that, depending on the chromosome, both distributions are suitable for describing the length distribution of human DNA for lengths greater than 10 bp. In addition, we used Bayesian statistics to perform a selection model approach, which revealed weak evidence for the inverse q-Gamma distribution for a considerable number of chromosomes.

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  • Received 6 July 2022
  • Accepted 16 November 2022

DOI:https://doi.org/10.1103/PhysRevE.106.064407

©2022 American Physical Society

Physics Subject Headings (PhySH)

Physics of Living Systems

Authors & Affiliations

M. O. Costa*

  • Departamento de Física, Universidade Federal do Rio Grande do Norte, Natal - RN, 59072-970, Brasil

R. Silva and D. H. A. L. Anselmo

  • Departamento de Física, Universidade Federal do Rio Grande do Norte, Natal - RN, 59072-970, Brasil and Programa de Pós-Graduação em Física, Universidade do Estado do Rio Grande do Norte, Mossoró - Rio Grande do Norte, 59610-210, Brasil

  • *marconeoliveiraa@gmail.com
  • raimundosilva@fisica.ufrn.br
  • doryh@fisica.ufrn.br

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Issue

Vol. 106, Iss. 6 — December 2022

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