Spectroscopic analysis in molecular simulations with discretized Wiener-Khinchin theorem for Fourier-Laplace transformation

Akira Koyama, David A. Nicholson, Marat Andreev, Gregory C. Rutledge, Koji Fukao, and Takashi Yamamoto
Phys. Rev. E 102, 063302 – Published 9 December 2020

Abstract

The Wiener-Khinchin theorem for the Fourier-Laplace transformation (WKT-FLT) provides a robust method to obtain the single-side Fourier transforms of arbitrary time-domain relaxation functions (or autocorrelation functions). Moreover, by combining an on-the-fly algorithm with the WKT-FLT, the numerical calculations of various complex spectroscopic data in a wide frequency range become significantly more efficient. However, the discretized WKT-FLT equation, obtained simply by replacing the integrations with the discrete summations, always produces two artifacts in the frequency-domain relaxation function. In addition, the artifacts become more apparent in the frequency-domain response function converted from the relaxation function. We find the sources of these artifacts that are associated with the discretization of the WKT-FLT equation. Taking these sources into account, we derive discretized WKT-FLT equations designated for both the frequency-domain relaxation and response functions with the artifacts removed. The use of the discretized WKT-FLT equations with the on-the-fly algorithm is illustrated by a flow chart. We also give application examples for the wave-vector-dependent dynamic susceptibility in an isotropic amorphous polyethylene and the frequency-domain response functions of the orientation vectors in an n-alkane crystal.

  • Figure
  • Figure
  • Figure
  • Figure
  • Figure
  • Figure
  • Figure
9 More
  • Received 5 June 2020
  • Accepted 7 October 2020

DOI:https://doi.org/10.1103/PhysRevE.102.063302

©2020 American Physical Society

Physics Subject Headings (PhySH)

Condensed Matter, Materials & Applied PhysicsPolymers & Soft MatterFluid DynamicsStatistical Physics & Thermodynamics

Authors & Affiliations

Akira Koyama*

  • Department of General Education, National Institute of Technology, Toyota College, 2-1 Eisei-cho, Toyota, Aichi 471-8525, Japan

David A. Nicholson, Marat Andreev, and Gregory C. Rutledge

  • Department of Chemical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA

Koji Fukao

  • Department of Physical Sciences, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan

Takashi Yamamoto

  • Department of Physics and Informatics, Yamaguchi University, Yamaguchi 753-8512, Japan

  • *koyama@toyota-ct.ac.jp

Article Text (Subscription Required)

Click to Expand

References (Subscription Required)

Click to Expand
Issue

Vol. 102, Iss. 6 — December 2020

Reuse & Permissions
Access Options
Author publication services for translation and copyediting assistance advertisement

Authorization Required


×
×

Images

×

Sign up to receive regular email alerts from Physical Review E

Log In

Cancel
×

Search


Article Lookup

Paste a citation or DOI

Enter a citation
×