Nonequilibrium biochemical structures in two space dimensions with local activation and regulation

B. Fourcade
Phys. Rev. E 101, 012420 – Published 31 January 2020

Abstract

Integrin receptor (IR) clustering is an example of pattern self-organization in biological systems. This paper describes a model for receptor activation whose content is guided by two major principles in cellular signal transduction: (i) Proteins cycle between different conformational states; (ii) the dynamics of their conformational dynamics is environment dependent. Based on a simple activation pathway where these two hypotheses are formulated in a self-consistent way, this paper focuses mainly on stochastic simulations valid in the limit of a small number of molecules. It is shown that coherent clustering can lead to digital signaling and receptor competition in biochemical systems where the model gives a recruitment mechanism for the reinforcement of the mechanical linkage with the extracellular matrix. Together with previous works, this paper provides a workable model for cell integrin adhesive structures when feedback mediated by membrane diffusing signals is dominant. Consequences are discussed in the framework of published data concerning the local production of a key phospholipid for cell signaling (PIP2).

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  • Received 3 June 2019
  • Revised 23 December 2019

DOI:https://doi.org/10.1103/PhysRevE.101.012420

©2020 American Physical Society

Physics Subject Headings (PhySH)

Physics of Living SystemsStatistical Physics & Thermodynamics

Authors & Affiliations

B. Fourcade*

  • Grenoble-Alpes University, CNRS, LIPHy, 38000, Grenoble, France

  • *Bertrand.Fourcade@univ-grenoble-alpes.fr

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Issue

Vol. 101, Iss. 1 — January 2020

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