Volume-Exclusion Effects in Tethered-Particle Experiments: Bead Size Matters

Darren E. Segall, Philip C. Nelson, and Rob Phillips
Phys. Rev. Lett. 96, 088306 – Published 3 March 2006

Abstract

We give a theoretical analysis of bead motion in tethered-particle experiments, a single-molecule technique that has been used to explore the dynamics of a variety of macromolecules of biological interest. Our analysis reveals that the proximity of the tethered bead to a nearby surface gives rise to a volume-exclusion effect, resulting in an entropic stretching-force on the molecule that changes its statistical properties. In addition, volume exclusion brings about intriguing scaling relations between key observables (statistical moments of the bead) and parameters such as bead size and contour length of the molecule. We present analytic and numerical results for these effects in both flexible and semiflexible tethers. Finally, our results give a precise, experimentally testable prediction for the probability distribution of the bead center measured from the polymer attachment point.

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  • Received 20 August 2005

DOI:https://doi.org/10.1103/PhysRevLett.96.088306

©2006 American Physical Society

Authors & Affiliations

Darren E. Segall1,*, Philip C. Nelson2, and Rob Phillips3

  • 1Division of Engineering and Applied Science, California Institute of Technology, Pasadena, California 91125, USA
  • 2Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
  • 3Division of Engineering and Applied Science and Kavli Nanoscience Institute, California Institute of Technology, Pasadena, California 91125, USA

  • *Present address: Areté Associates, 5000 Van Nuys Boulevard, Sherman Oaks, CA 91403, USA.

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Vol. 96, Iss. 8 — 3 March 2006

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