Subdiffusive target problem: Survival probability

S. B. Yuste and Katja Lindenberg
Phys. Rev. E 76, 051114 – Published 14 November 2007

Abstract

The asymptotic survival probability of a spherical target in the presence of a single subdiffusive trap or surrounded by a sea of subdiffusive traps in a continuous Euclidean medium is calculated. In one and two dimensions the survival probability of the target in the presence of a single trap decays to zero as a power law and as a power law with logarithmic correction, respectively. The target is thus reached with certainty, but it takes the trap an infinite time on average to do so. In dimensions higher than two a single trap may never reach the target and so the survival probability is finite and, in fact, does not depend on whether the traps move diffusively or subdiffusively. When the target is surrounded by a sea of traps, on the other hand, its survival probability decays as a stretched exponential in all dimensions (with a logarithmic correction in the exponent for d=2). A trap will therefore reach the target with certainty, and will do so in a finite time. These results may be directly related to enzyme binding kinetics on DNA in the crowded cellular environment.

  • Received 19 September 2007

DOI:https://doi.org/10.1103/PhysRevE.76.051114

©2007 American Physical Society

Authors & Affiliations

S. B. Yuste1 and Katja Lindenberg2

  • 1Departamento de Física, Universidad de Extremadura, E-06071 Badajoz, Spain
  • 2Department of Chemistry and Biochemistry 0340 and Institute for Nonlinear Science, University of California–San Diego, 9500 Gilman Drive, La Jolla, California 92093-0340, USA

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Vol. 76, Iss. 5 — November 2007

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