• Open Access

Superposed recurrence plots for reconstructing a common input applied to neurons

Ryota Nomura, Kantaro Fujiwara, and Tohru Ikeguchi
Phys. Rev. E 106, 034205 – Published 12 September 2022

Abstract

In the brain, common inputs play an important role in eliciting synchronous firing in the assembly of neurons. However, common inputs are usually unknown to observers. If an unobserved common input can be reconstructed only from outputs, it would be beneficial to the understanding of communication in the brain. Thus, we have developed a method for reconstructing a common input only from output firing rates of uncoupled neuron models. To this end, we propose a superposed recurrence plot (SRP) comprising points determined by using a union of points at each pixel among multiple recurrence plots. The SRP method can reconstruct a common input when using various types of neurons with different firing rate baselines, even when using uncoupled neuron models that exhibit chaotic responses. The SRP method robustly reconstructs the common input applied to the neuron models when we select adequate time windows to calculate the firing rates in accordance with the width of the fluctuations. These results suggest that certain information is embedded in the firing rate. These findings could be a possible basis for analyzing whole-brain communication utilizing rate coding.

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  • Received 24 June 2022
  • Accepted 21 July 2022

DOI:https://doi.org/10.1103/PhysRevE.106.034205

Published by the American Physical Society under the terms of the Creative Commons Attribution 4.0 International license. Further distribution of this work must maintain attribution to the author(s) and the published article's title, journal citation, and DOI.

Published by the American Physical Society

Physics Subject Headings (PhySH)

Physics of Living Systems

Authors & Affiliations

Ryota Nomura1,2,*, Kantaro Fujiwara3, and Tohru Ikeguchi1,4

  • 1Graduate School of Engineering, Tokyo University of Science, 6–3–1, Niijuku, Katsushika-ku, Tokyo 125-8585, Japan
  • 2Faculty of Human Education, Kagoshima Immaculate Heart University, 2365, Amatatsu-cho, Satsumasendai, Kagoshima 895-0011, Japan
  • 3International Research Center for Neurointelligence, The University of Tokyo, 7–3–1, Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
  • 4Faculty of Engineering, Tokyo University of Science, 6–3–1, Niijuku, Katsushika-ku, Tokyo 125-8585, Japan

  • *Present address: Faculty of Human Sciences, Waseda University, 2–579–15, Mikashima, Tokorozawa, Saitama, 359-1192 Japan; nomuraryota@waseda.jp; nomura@hisenkei.net

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Issue

Vol. 106, Iss. 3 — September 2022

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