Tumebacillus soli sp. nov., isolated from non-rhizosphere soil

References

1. Baek S. H., Cui Y., Kim S. C., Cui C. H., Yin C., Lee S. T., Im W. T. 2011; Tumebacillus ginsengisoli sp. nov., isolated from soil of a ginseng field. Int J Syst Evol Microbiol 61:1715–1719 [View Article][PubMed]
   [Google Scholar]
2. Benson D. A., Cavanaugh M., Clark K., Karsch-Mizrachi I., Lipman D. J., Ostell J., Sayers E. W. 2013; Genbank. Nucleic Acids Res 41:D36–D42 [View Article][PubMed]
   [Google Scholar]
3. Bowman J. P. 2000; Description of cellulophaga algicola sp. nov., isolated from the surfaces of antarctic algae, and reclassification of cytophaga uliginosa (zobell and upham 1944) reichenbach 1989 as cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50:1861–1868 [View Article][PubMed]
   [Google Scholar]
4. Cappuccino J. G., Sherman N. 2002; Microbiology: a Laboratory Manual. Menlo Park, 6th edn. CA: Benjamin/Cummings;
   [Google Scholar]
5. Ezaki T., Hashimoto Y., Yabuuchi E. 1989; Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229 [View Article]
   [Google Scholar]
6. Felsenstein J. 1981; Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376 [View Article]
   [Google Scholar]
7. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [View Article]
   [Google Scholar]
8. Felsenstein J. 1989; PHYLIP – phylogeny inference package (version 3.2). Cladistics 5:164–166
   [Google Scholar]
9. Fitch W. M., Margoliash E. 1967; Construction of phylogenetic trees. Science 155:279–284 [View Article][PubMed]
   [Google Scholar]
10. Fitch W. M. 1971; Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416 [View Article]
    [Google Scholar]
11. Goris J., Suzuki Ken-ichiro., Vos P. D., Nakase T., Kersters K. 1998; Evaluation of a microplate DNA - DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44:1148–1153 [View Article]
    [Google Scholar]
12. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules. In Mammalian Protein Metabolism , pp. 21–132 Edited by Munro H. H. New York: Academic Press; [CrossRef]
    [Google Scholar]
13. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. et al. 2012; Introducing eztaxon-e: a prokaryotic 16S rrna gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721 [View Article][PubMed]
    [Google Scholar]
14. Komagata K., Suzuki K. 1988; Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–207 [View Article]
    [Google Scholar]
15. Lane D. J. 1991; 16S/23S RNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics , pp. 115–175 Edited by Stackebrandt E., Goodfellow M. London: John Wiley & Sons Ltd;
    [Google Scholar]
16. Lanyi B. 1988; Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19:1–67 [CrossRef]
    [Google Scholar]
17. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. 2007; Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–2948 [View Article][PubMed]
    [Google Scholar]
18. Marmur J. 1961; A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3:208–218 [CrossRef]
    [Google Scholar]
19. Minnikin D. E., Hutchinson I. G., Caldicott A. B., Goodfellow M. 1980; Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr A 188:221–233 [View Article]
    [Google Scholar]
20. Moore W. E. C., Stackebrandt E., Kandler O., Colwell R. R., Krichevsky M. I., Truper H. G., Murray R. G. E., Wayne L. G., Grimont P. A. D. et al. 1987; Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Evol Microbiol 37:463–464 [View Article]
    [Google Scholar]
21. Nam S. W., Kim W., Chun J., Goodfellow M. 2004; Tsukamurella pseudospumae sp. nov., a novel actinomycete isolated from activated sludge foam. Int J Syst Evol Microbiol 54:1209–1212 [View Article][PubMed]
    [Google Scholar]
22. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
    [Google Scholar]
23. Schleifer K. H., Kandler O. 1972; Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407–477[PubMed]
    [Google Scholar]
24. Smibert R. M., Krieg N. R. 1994; Phenotypic characterization. In Methods for General and Molecular Bacteriology pp. 607–654 Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
    [Google Scholar]
25. Steven B., Chen M. Q., Greer C. W., Whyte L. G., Niederberger T. D. 2008; Tumebacillus permanentifrigoris gen. nov., sp. nov., an aerobic, spore-forming bacterium isolated from canadian high arctic permafrost. Int J Syst Evol Microbiol 58:1497–1501 [View Article][PubMed]
    [Google Scholar]
26. Tamaoka J., Komagata K. 1984; Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128 [View Article]
    [Google Scholar]
27. Wang Q., Xie N., Qin Y., Shen N., Zhu J., Mi H., Huang R. 2013; Tumebacillus flagellatus sp. nov., an α-amylase/pullulanase-producing bacterium isolated from cassava wastewater. Int J Syst Evol Microbiol 63:3138–3142 [View Article][PubMed]
    [Google Scholar]
28. Wu Y. F., Zhang B., Xing P., Wu Q. L., Liu S. J. 2015; Tumebacillus algifaecis sp. nov., isolated from decomposing algal scum. Int J Syst Evol Microbiol 65:2194–2198 [View Article][PubMed]
    [Google Scholar]