1887

Abstract

Two Gram-positive coccoid, non-motile bacteria with -ornithine as diagnostic diamino acid of the peptidoglycan and an interpeptide bridge of -Orn ← Gly-Glu were isolated from a sample of garden soil. The major menaquinone is MK-8(H). 13-methyl and 12-methyl tetradecanoic acids are the predominant fatty acids. The polar lipids are phosphatidylinositol, phosphatidylglycerol, diphosphatidylglycerol, phosphatidylserine and two unknown phospholipids. Mycotic acids are absent. The DNA base composition is 72 mol% G+C. Recent comparative 16S rDNA studies revealed that strains HKI 0125 and HKI 0131 represent a novel lineage adjacent to the family of the order but distinct from the previously described genera of this family. On the basis of the genotypic, chemotaxonomic, morphological and physiological characteristics of these two isolates it is proposed to classify HKI 0125 and HKI 0131 in a new genus and species for which the name gen. nov., sp. nov. is proposed. The type strain is HKI 0125(= DSM 12335).

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1999-10-01
2024-04-25
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References

  1. Bergey D. H., Harrison F. C., Breed R. S., Hammer B. W., Huntoon F. M.editors 1923 Bergey’s Manual of Determinative Bacteriology Baltimore: Williams & Wilkins;
    [Google Scholar]
  2. Collins M. D., Jones D. 1980; Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J ApplBacteriol 48:459–470
    [Google Scholar]
  3. Collins M. D., Pirouz T., Goodfellow M., Minnikin D. E. 1977; Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230
    [Google Scholar]
  4. Collins M. D., Jones D., Keddie R. M., Kroppenstedt R. M., Schleifer K. H. 1983a; Classification of some coryneform bacteria in a new genus Aureobacterium. Syst Appl Microbiol 4:236–252
    [Google Scholar]
  5. Collins M. D., Jones D., Keddie R. M., Kroppenstedt R. M., Schleifer K. H. 1983b; Aureobacterium gen. nov. Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the USB, List no. 11. Int J Syst Bacteriol 33:672–674
    [Google Scholar]
  6. De Soete G. 1983; A least square algorithm for fitting additive trees to proximity data. Psychometrika 48:621–626
    [Google Scholar]
  7. Felsenstein J. 1993 phylip (Phylogenetic Inference Package) version 3.5.1. Seattle: Department of Genetics, University of Washington;
    [Google Scholar]
  8. Frank H., Rettenmeier A., Weicker H., Nicholson G. J., Bayer E. 1980; A new gas chromatographic method for determination of amino acid levels in human serum. Clin Chim Acta 105:201–211
    [Google Scholar]
  9. Goto-Yamamoto N., Sato S.-I., Miki H., Park Y. K., Tadenuma M. 1993; Taxonomic studies on yeast-lysing bacteria, and a new species Rarobacter incanus. J Gen Appl Microbiol 39:261–272
    [Google Scholar]
  10. Groth I., Schumann P., Weiss N., Martin K., Rainey F. A. 1996; Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46:234–239
    [Google Scholar]
  11. Groth I., Schumann P., Rainey F. A., Martin K., Schuetze B., Augsten K. 1997; Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47:1129–1133
    [Google Scholar]
  12. Jukes T. H., Cantor C. R. 1969 Evolution of protein molecules. Mammalian Protein Metabolism 321–132 Edited by Munro H. N. New York: Academic Press;
    [Google Scholar]
  13. MacKenzie S. L. 1987; Gas chromatographic analysis of amino acids as the A-heptafluorobutyryl isobutyl esters. J Assoc Off Anal Chern 70:151–160
    [Google Scholar]
  14. Maidak B. L., Larsen N., McCaughey M. J., Overbeek R., Olsen G. J., Woese C. R. 1997; The ribosomal database project. Nucleic Acids Res 25:109–111
    [Google Scholar]
  15. Martin K., Schumann P., Rainey F. A., Schuetze B., Groth I. 1997; Janibacter limosus gen. nov., sp. nov., a new actinomycete with meso-diaminopimelic acid in the cell wall. Int J Syst Bacteriol 47:529–534
    [Google Scholar]
  16. Minnikin D. E., Alshamaony L., Goodfellow M. 1975; Differentiation of Mycobacterium, Nocardia, and related taxa by thin-layer chromatographic analysis of whole-organism methanolysates. J Gen Microbiol 88:200–204
    [Google Scholar]
  17. Minnikin D. E., Collins M. D., Goodfellow M. 1979; Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47:87–95
    [Google Scholar]
  18. Orla-Jensen S. 1919 The Lactic Acid Bacteria Copenhagen: Host;
    [Google Scholar]
  19. Park Y.-H., Suzuki K.-I., Yim D.-G.7 other authors 1993; Suprageneric classification of peptidoglycan group B actinomycetes by nucleotide sequencing of 5S ribosomal RNA. Antonie Leeuwenhoek 64:307–313
    [Google Scholar]
  20. Prauser H., Schumann P., Rainey F. A., Kroppenstedt R. M., Stackebrandt E. 1997; Terracoccus luteus gen. nov., sp. nov., an LL-diaminopimelic acid-containing coccoid actinomycete from soil. Int J Syst Bacteriol 47:1218–1224
    [Google Scholar]
  21. Rainey F. A., Weiss N., Prauser H., Stackebrandt E. 1994; Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis. FEMS Microbiol Lett 118:135–139
    [Google Scholar]
  22. Rainey F. A., Ward-Rainey N., Kroppenstedt R. M., Stackebrandt E. 1996; The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46:1088–1092
    [Google Scholar]
  23. Schleifer K. H. 1985; Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18:123–156
    [Google Scholar]
  24. Schleifer K. H., Kandler O. 1972; Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407–477
    [Google Scholar]
  25. Schumann P., Prauser H., Rainey F. A., Stackebrandt E., Hirsch P. 1997; Friedmanniella antarctica gen. nov., sp. nov., an LL-diaminopimelic acid-containing actinomycete from Antarctic sandstone. Int J Syst Bacteriol 47:278–283
    [Google Scholar]
  26. Stackebrandt E., Koch C., Gvozdiak O., Schumann P. 1995; Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., and Micrococcus Cohn 1872 gen. emend. Int J Syst Bacteriol 45:682–692
    [Google Scholar]
  27. Stackebrandt E., Rainey F. A., Ward-Rainey N. 1997; Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47:479–491
    [Google Scholar]
  28. Stead D. E., Sellwood J. E., Wilson J., Viney I. 1992; Evaluation of a commercial microbial identification system based on fatty acid profiles for rapid, accurate identification of plant pathogenic bacteria. J Appl Bacteriol 72:315–321
    [Google Scholar]
  29. Takeuchi M., Hatano K. 1998; Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. Int J Syst Bacteriol 48:739–747
    [Google Scholar]
  30. Takeuchi M., Yokota A. 1994; Phylogenetic analysis of the genus Microbacterium based on 16S rRNA gene sequences. FEMS Microbiol Lett 124:11–16
    [Google Scholar]
  31. Uchida K., Aida K. 1984; An improved method for the glycolate test for simple identification of the acyl type of bacterial cell walls. J Gen Appl Microbiol 30:131–134
    [Google Scholar]
  32. Yamada K., Komagata K. 1972a; Taxonomic studies on coryneform bacteria. IV. Morphological, cultural, biochemical, and physiological characteristics. J Gen Appl Microbiol 18:399–416
    [Google Scholar]
  33. Yamada K., Komagata K. 1972b; Taxonomic studies on coryneform bacteria. V. Classification of coryneform bacteria. J Gen Appl Microbiol 18:417–431
    [Google Scholar]
  34. Yamamoto N., Sato S.-I., Saito K., Hasuo T., Tadenuma M., Suzuki K.-I., Tamaoka J., Komagata K. 1988; Rarobacter faecitabidus gen. nov., sp. nov., a yeast-lysing coryneform bacterium. Int J Syst Bacteriol 38:7–11
    [Google Scholar]
  35. Yokota A., Takeuchi M., Sakane T., Weiss N. 1993; Proposal of six new species of the genus Aureobacterium and transfer of Flavobacterium esteraromaticum Omelianski to the genus Aureobacterium as Aureobacterium esteraromaticum comb. nov. Int J Syst Bacteriol 43:555–564
    [Google Scholar]
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