Evaluation of intraspecies genetic variation within the 60 kDa heat-shock protein gene (groEL) of Bartonella species

References

1. Baker J. A. 1946; A rickettsial infection in Canadian voles. J Exp Med 84:37–50
   [Google Scholar]
2. Benachenhou-Lahfa N., Labedan B., Forterre P. 1994; PCR- mediated cloning and sequencing of the gene encoding glutamate dehydrogenase from the archaeon Sulfolobus shibatae: identification of putative amino-acid signatures for extremophilic adaption. Gene 140:17–24
   [Google Scholar]
3. Berry V., Gascuel O. 1996; On the interpretation of bootstrap trees: appropriate threshold of clade selection and induced gain. Mol Biol Evol 13:999–1011
   [Google Scholar]
4. Birtles R. J., Raoult D. 1996; Comparison of partial citrate synthase gene (gltA) sequences for phylogenetic analysis of Bartonella species. Int J Syst Bacteriol 46:891–897
   [Google Scholar]
5. Birtles R. J., Harrison T. G., Saunders N. A., Molyneux D. H. 1995; Proposals to unify the genera Grahamella and Bartonella, with descriptions of Bartonella talpae comb. nov., Bartonella peromysci comb. nov., and three new species, Bartonella grahamii sp. nov., Bartonella taylorii sp. nov., and Bartonella doshiae sp. nov. Int J Syst Bacteriol 45:1–8
   [Google Scholar]
6. Breitschwerdt E. B., Kordick D. L., Malarkey D. E., Keene B., Hadfield T. L., Wilson K. 1995; Endocarditis in a dog due to infection with a novel Bartonella subspecies. J Clin Microbiol 33:154–160
   [Google Scholar]
7. Brenner D. J., O'Connor S. P., Winkler H. H., Steigerwalt A. G. 1993; Proposals to unify the genera Bartonella and Rochalimaea, with descriptions of Bartonella quintana comb. nov., Bartonella vinsonii comb. nov., Bartonella henselae comb. nov., and Bartonella elizabethae comb. nov., and to remove the family Bartonellaceae from the order Rickettsiales. Int J Syst Bacteriol 43:777–786
   [Google Scholar]
8. Brown J. R., Masuchi Y., Robb F. T., Doolittle W. F. 1994; Evolutionary relationships of bacterial and archaeal glutamine synthetase genes. J Mol Evol 38:566–576
   [Google Scholar]
9. Cáceres-Rios H., Rodríguez-Tafur J., Bravo-Puccio F., Maguina-Vargas C., Díaz C. S., Ramos D. C., Patarca R. 1995; Verruga peruana: an infectious endemic angiomatosis. Crit Rev Oncog 6:47–56
   [Google Scholar]
10. Checa S. K., Viale A. M. 1997; The 70-kDa heat-shock protein/DnaK chaperone system is required for the productive folding of ribulose-bisphosphate carboxylase subunits in Escherichia coli. Eur J Biochem 248:848–855
    [Google Scholar]
11. Clarridge J. E., Raich T. J., Pirwani D. 8 other authors 1995; Strategy to detect and identify Bartonella species in routine clinical laboratory yields Bartonella henselae from human immunodeficiency virus-positive patient and unique Bartonella strain from his cat. J Clin Microbiol 33:2107–2113
    [Google Scholar]
12. Creti R., Citarella F., Tibone O., Sanangelantoni A., Palm P., Cammarano P. 1991; Nucleotide sequence of a DNA region comprising the gene for elongation factor la (EF-la) from the ultrathermophilic archaeote Pyrococcus woesei: phylogenetic implications. J Mol Evol 33:332–342
    [Google Scholar]
13. Daly J. S., Worthington M. G., Brenner D. J. 7 other authors 1993; Rochalimaea elizabethae sp. nov. isolated from a patient with endocarditis. J Clin Microbiol 31:872–881
    [Google Scholar]
14. Dame J. B., Mahan S. M., Yowell C. A. 1992; Phylogenetic relationship of Cowdria ruminantium, agent of heartwater, to Anaplasma marginale and other members of the order Rickettsiales determined on the basis of 16S rRNA sequence. Int J Syst Bacteriol 42:270–274
    [Google Scholar]
15. Dolan M. J., Wong M. T., Regnery R.L., Jorgensen J. H., Garcia M., Peters J., Drehner D. 1993; Syndrome of Rochalimaea henselae adenitis suggesting cat scratch disease. Ann Intern Med 118:331–336
    [Google Scholar]
16. Dorsch M., Moreno E., Stackebrandt E. 1989; Nucleotide sequence of the 16S rRNA from Brucella abortus. Nucleic Acids Res 17:1765
    [Google Scholar]
17. Eisen J. A. 1995; The RecA protein as a model molecule for molecular systematics studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species. J Mol Evol 41:1105–1123
    [Google Scholar]
18. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791
    [Google Scholar]
19. Felsenstein J. 1989; phylip: phylogeny inference package. Cladistics 5:164–166
    [Google Scholar]
20. Ferreyra R. G., Soncini F. C., Viale A. M. 1993; Cloning, characterization, and functional expression in Escherichia coli of chaperonin (groESL) genes from the phototrophic sulfur bacterium Chromatium vinosum. J Bacteriol 175:1514–1523
    [Google Scholar]
21. Fischer H. M., Babst M., Kaspar T., Acuna G., Arigoni F., Hennecke H. 1993; One member of a groESL-like chaperonin multigene family in Bradyrhizobium japonicum is co-regulated with symbiotic nitrogen fixation genes. EMBO J 12:2901–2912
    [Google Scholar]
22. Fitch W. M., Margoliash E. 1967; Construction of phylogenetic trees. Science 155:279–284
    [Google Scholar]
23. Fox G. E., Stackebrandt E., Hepsell R. B. 16 other authors 1980; The phylogeny of prokaryotes. Science 209:457–463
    [Google Scholar]
24. Genetics Computer Group 1996; Wisconsin Sequence Analysis Package, version 9.0. Genetics Computer Group; Madison, USA:
    [Google Scholar]
25. Gor D., Mayfield J. E. 1992; Cloning and nucleotide sequence of the Brucella abortus groE operon. Biochim Biophys Acta 1130:120–122
    [Google Scholar]
26. Gupta R. S. 1995; Evolution of the chaperonin families (Hsp60, Hsp10, and Tcp-1) of proteins and the origin of eukaryotic cells. Mol Microbiol 15:1–11
    [Google Scholar]
27. Hasegawa M., Hashimoto T. 1993; Ribosomal RNA trees misleading?. Nature 361:23
    [Google Scholar]
28. Hoekstra M. F. 1988; Lid lysates: an economical and rapid method for plasmid analysis. Biotechniques 6:930–932
    [Google Scholar]
29. Jukes T. H., Bhushan V. 1986; Silent nucleotide substitutions and G -I- C content of some mitochondrial and bacterial genes. J Mol Evol 24:39–44
    [Google Scholar]
30. Karlin S., Weinstock G. M., Brendel V. 1995; Bacterial classifications derived from RecA protein sequence comparisons. J Bacteriol 177:6881–6893
    [Google Scholar]
31. Kimura M. 1980; A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120
    [Google Scholar]
32. Kordick D.L., Hilyard E. J., Hadfield T.L., Wilson K. H., Steigerwalt A. G., Brenner D. J., Breitschwerdt E. B. 1997; Bartonella clarridgeiae, a newly recognized zoonotic pathogen causing inoculation papules, fever, and lymphadenopathy (cat scratch disease). J Clin Microbiol 35:1813–1818
    [Google Scholar]
33. Kosoy M., Regnery R., Tzianabos T., Marston E., Jones D., Green D., Maupin G., Olson J., Childs J. 1997; Distribution, diversity and host specificity of Bartonella in rodents from the southeastern United States. Am J Trop Med. Hyg 57:578–588
    [Google Scholar]
34. Kruse M., Gamulin V., Cetkovic H., Pancer Z., Muller I. M., Muller E. G. 1996; Molecular evolution of the metazoan protein kinase C multigene family. J Mol Evol 43:374–383
    [Google Scholar]
35. Kumada Y., Benson D. R., Hillemann D., Hosted T. J., Rochefor D. A., Thompson C. J., Wohlleben W., Tateno Y. 1993; Evolution of the glutamine synthetase gene, one of the oldest existing and functioning genes. Proc Natl Acad Sci USA 90:3009–3013
    [Google Scholar]
36. Lally N.C., Nicoll S., Paxton E. A., Cary C. M., Sumption K. J. 1995; The Cowdria ruminantium groE operon. Microbiology 141:2091–2100
    [Google Scholar]
37. Lawson P. A., Clarridge J. E., Collins M. D. 1996; Description of Bartonella-clarridgeiae sp.nov. isolated from the cat of a patient with Bartonellahenselae-septicemia. Med Microbiol Lett 5:64–73
    [Google Scholar]
38. Maniatis T., Fritsch E. F., Sambrook J. 1989 Molecular Cloning: a Laboratory Manual Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
39. Masui S., Sasaki T., Ishikawa H. 1997; groE-homologous operon of Wolbachia, an intracellular symbiont of arthropods: a new approach for their phylogeny. Zool Sci 14:701–706
    [Google Scholar]
40. Maurin M., Birtles R., Raoult D. 1997; Current knowledge of Bartonella species. Eur J Clin Microbiol Infect Dis 16:487–506
    [Google Scholar]
41. Myers W. F., Wisseman C. L. 1980; Genetic relatedness among the Typhus group of Rickettsiae. Int J Syst Bacteriol 30:143–159
    [Google Scholar]
42. Myers W. F., Wisseman C. L., Fiset P., Oaks E. V., Smith J. F. 1979; Taxonomic relationship of vole agent to Rochalimaea quintana. Infect Immun 26:976–983
    [Google Scholar]
43. Norman A. F., Regnery R., Jameson P., Greene C., Krause D. C. 1995; Differentiation of Bartonella-like isolates at the species level by PCR-restriction fragment length polymorphism in the citrate synthase gene. J Clin Microbiol 33:1797–1803
    [Google Scholar]
44. Olsen G. J., Woese C. R. 1993; Ribosomal RNA: a key to phylogeny. FASEB J 7:113–123
    [Google Scholar]
45. Regnery R. L., Anderson B. E., Clarridge J. E., Rodríguez-Barradas M. C., Jones D. C., Carr J. H. 1992a; Characterization of a novel Rochalimaea species, R. henselae sp. nov., isolated from blood of a febrile, human immunodeficiency virus-positive patient. J Clin Microbiol 30:265–274
    [Google Scholar]
46. Regnery R., Martin M., Olson J. 1992b; Naturally occurring “Rochalimaea henselae” infection in domestic cat. Lancet 340:557–558
    [Google Scholar]
47. Roux V., Rydkina E., Eremeeva M., Raoult D. 1997; Citrate synthase comparison, a new tool for phylogenetic analysis, and its application for the Rickettsiae. Int J Syst Bacteriol 47:252–261
    [Google Scholar]
48. Rusanganwa E., Gupta R. S. 1993; Cloning and characterization of multiple groEL chaperonin-encoding genes in Rhizobium meliloti. Gene 126:67–75
    [Google Scholar]
49. Saitou N., Nei M. 1987; The neighbor joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
50. Sawada H., leki H., Oyaizu H., Matsumoto S. 1993; Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium radiobacter and Agrobacterium rhizogenes. Int J Syst Bacteriol 43:694–702
    [Google Scholar]
51. Segal G., Ron E. Z. 1995; The groESL operon of Agrobacterium tumefaciens: evidence for heat shock-dependent mRNA cleavage. J Bacteriol 177:750–757
    [Google Scholar]
52. Segal R., Ron E. Z. 1996; Regulation and organization of the groE and dnaK operons in Eubacteria. FEMS Microbiol Lett 138:1–10
    [Google Scholar]
53. Shatters R. G., Somerville J. E., Kahn M. L. 1989; Regulation of glutamine synthetase II activity in Rhizobium meliloti 104a14. J Bacteriol 171:5087–5094
    [Google Scholar]
54. Staden R. 1982; An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences. Nucleic Acids Res 10:2951–2961
    [Google Scholar]
55. Steel M. A., Lockhart P. J., Penny D. 1993; Confidence in evolutionary trees from biological sequence data. Nature 364:440–442
    [Google Scholar]
56. Sumner J. W., Sims K. G., Jones D. C., Anderson B. E. 1993; Ehrlichia chaffeensis expresses an immunoreactive protein homologous to the Escherichia coli GroEL protein. Infect Immun 61:3536–3569
    [Google Scholar]
57. Swofford D. 1991; Phylogenetic analysis using parsimony (paup), version 3.1.1. Champaign, IL: Illinois Natural History Survey;
    [Google Scholar]
58. Tiboni O., Cammarano P., Sanangelantoni A. M. 1993; Cloning and sequencing of the gene encoding glutamine synthetase I from the archeum Pyrococcus woesi: anomalous phylogenetics inferred from analysis of archeal and bacterial glutamine synthetase I sequences. J Bacteriol 175:2271–2277
    [Google Scholar]
59. Viale A. M., Arakaki A. K., Soncini F. C., Ferreyra R. G. 1994; Evolutionary relationships among eubacterial groups as inferred from GroEL (chaperonin) sequence comparisons. Int J Syst Bacteriol 44:527–533
    [Google Scholar]
60. Vinson J. W. 1966; In vitro cultivation of the rickettsial agent of trench fever. Bull WHO 35:155–164
    [Google Scholar]
61. Wang W., Shakes D. C. 1996; Molecular evolution of the 14- 3-3 protein family. J Mol Evol 43:384–398
    [Google Scholar]
62. Weisburg W. G., Dobson M. E., Samuel J. E., Dasch G. A., Mallavia L. P., Mandelco L., Sechrest J. E., Weiss E., Woese C. R. 1989; Phylogenetic diversity of the Rickettsiae. J Bacteriol 171:4202–4206
    [Google Scholar]
63. Weiss E., Dasch G. A., Woodman D. R., Williams J. C. 1978; Vole agent identified as a strain of the trench fever rickettsia, Rochalimaea quintana. Infect Immun 19:1013–1020
    [Google Scholar]
64. Weiss E., Mamay H. K., Dasch G. A. 1982; Ornithine metabolism in the genus Rochalimaea. J Bacteriol 150:245–250
    [Google Scholar]
65. Westfall H. N., Edman D. C., Weiss E. 1984; Analysis of fatty acids of the genus Rochalimaea by electron capture gas chromatography: detection of nonanoic acid. J Clin Microbiol 19:305–310
    [Google Scholar]
66. Woese C. R., Kandler O., Wheelis M. L. 1990; Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 87:4576–4579
    [Google Scholar]