Halarchaeum rubridurum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt samples

References

1. Cline S. W., Schalkwyk L. C., Doolittle W. F. ( 1989 ). Transformation of the archaebacterium Halobacterium volcanii with genomic DNA. . J Bacteriol 171, 4987–4991.[PubMed]
   [Google Scholar]
2. Dussault H. P. ( 1955 ). An improved technique for staining red halophilic bacteria. . J Bacteriol 70, 484–485.[PubMed]
   [Google Scholar]
3. Ezaki T., Hashimoto Y., Yabuuchi E. ( 1989 ). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. . Int J Syst Bacteriol 39, 224–229. [View Article]
   [Google Scholar]
4. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783–791. [View Article]
   [Google Scholar]
5. Felsenstein J. ( 2002 ). phylip (phylogeney inference package), version 3.6a. . Distributed by the author, University of Washington;, Seattle, USA:.
   [Google Scholar]
6. Gonzalez C., Gutierrez C., Ramirez C. ( 1978 ). Halobacterium vallismortis sp. nov. An amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. . Can J Microbiol 24, 710–715. [View Article] [PubMed]
   [Google Scholar]
7. Gutiérrez M. C., Castillo A. M., Kamekura M., Ventosa A. ( 2008 ). Haloterrigena salina sp. nov., an extremely halophilic archaeon isolated from a salt lake. . Int J Syst Evol Microbiol 58, 2880–2884. [View Article] [PubMed]
   [Google Scholar]
8. Kamekura M. ( 1993 ). Lipids of extreme halophiles. . In The Biology of Halophilic Bacteria, pp. 135–161. Edited by Vreeland R. H., Hochstein L. I. . Boca Raton, FL:: CRC Press;.
   [Google Scholar]
9. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. & other authors ( 2007 ). clustal w and clustal_x version 2.0. . Bioinformatics 23, 2947–2948. [View Article] [PubMed]
   [Google Scholar]
10. Minegishi H., Mizuki T., Echigo A., Fukushima T., Kamekura M., Usami R. ( 2008 ). Acidophilic haloarchaeal strains are isolated from various solar salts. . Saline Syst 4, 16. [View Article] [PubMed]
    [Google Scholar]
11. Minegishi H., Echigo A., Nagaoka S., Kamekura M., Usami R. ( 2010 ). Halarchaeum acidiphilum gen. nov., sp. nov., a moderately acidophilic haloarchaeon isolated from commercial solar salt. . Int J Syst Evol Microbiol 60, 2513–2516. [View Article] [PubMed]
    [Google Scholar]
12. Minegishi H., Kamekura M., Kitajima-Ihara T., Nakasone K., Echigo A., Shimane Y., Usami R., Itoh T., Ihara K. ( 2012 ). Gene orders in the upstream of 16S rRNA genes divide genera of the family Halobacteriaceae into two groups. . Int J Syst Evol Microbiol 62, 188–195. [View Article] [PubMed]
    [Google Scholar]
13. Miyazaki S., Sugawara H., Gojobori T., Tateno Y. ( 2003 ). DNA Data Bank of Japan (DDBJ) in XML. . Nucleic Acids Res 31, 13–16. [View Article] [PubMed]
    [Google Scholar]
14. Oren A. ( 2012 ). Taxonomy of the family Halobacteriaceae: a paradigm for changing concepts in prokaryote systematics. . Int J Syst Evol Microbiol 62, 263–271. [View Article] [PubMed]
    [Google Scholar]
15. Oren A., Ventosa A., Grant W. D. ( 1997 ). Proposed minimal standards for description of new taxa in the order Halobacteriales . . Int J Syst Bacteriol 47, 233–238. [View Article]
    [Google Scholar]
16. Pearson W. R., Lipman D. J. ( 1988 ). Improved tools for biological sequence comparison. . Proc Natl Acad Sci U S A 85, 2444–2448. [View Article] [PubMed]
    [Google Scholar]
17. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
18. Smibert R. M., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607–654. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
19. Stackebrandt E., Ebers J. ( 2006 ). Taxonomic parameters revisited: tarnished gold standards. . Microbiology Today 33, 152–155.
    [Google Scholar]
20. Stackebrandt E., Frederiksen W., Garrity G. M., Grimont P. A., Kämpfer P., Maiden M. C., Nesme X., Rosselló-Mora R., Swings J. & other authors ( 2002 ). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. . Int J Syst Evol Microbiol 52, 1043–1047. [View Article] [PubMed]
    [Google Scholar]
21. Stamatakis A., Ludwig T., Meier H. ( 2005 ). RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. . Bioinformatics 21, 456–463. [View Article] [PubMed]
    [Google Scholar]
22. Tamaoka J., Komagata K. ( 1984 ). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. . FEMS Microbiol Lett 25, 125–128. [View Article]
    [Google Scholar]
23. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. & other authors ( 1987 ). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37, 463–464. [View Article]
    [Google Scholar]
24. Yamauchi Y., Minegishi H., Echigo A., Shimane Y., Shimoshige H., Kamekura M., Itoh T., Doukyu N., Inoue A., Usami R. ( 2013 ). Halarchaeum salinum sp. nov., a moderately acidophilic haloarchaeon isolated from commercial sea salt. . Int J Syst Evol Microbiol 63, 1138–1142. [View Article] [PubMed]
    [Google Scholar]