Issue 8, 2023

Effect of substrate charge density on the adsorption of intrinsically disordered protein amyloid β40: a molecular dynamics study

Abstract

The inhibitory effect of negatively charged gold nanoparticles (AuNPs) on amyloidogenic protein fibrillation has been established from experiments and computer simulations. Here, we investigate the effect of the charge density (σ) of gold (Au) surfaces on the adsorption of the intrinsically disordered amyloid β40 (Aβ40) monomer using molecular dynamics (MD) simulations. On the basis of the binding free energy, some key residues (ARG5, LYS16, LYS28, LEU17-ALA21, ILE31-VAL38) were found to be responsible for preventing the β-sheet formation, which is known to be a precursor for fibrillation. Until a critical charge density (σc) of −0.167 e nm−2, the key residues remained adsorbed on the Au slab. A saturation in the number of condensed counterions (Na+) on Aβ40 was also observed at σc. Beyond σc, the condensation of Na+ occurs only on the Au slab, leading to competition between positively charged key residues and condensed ions. This competition was found to be responsible for the lack of adsorption of the key residues, leading to β-sheet formation for σ > −0.167 e nm−2. This study suggests that if the key residues are not adsorbed, then β-sheet formation is observed, which can then lead to the development of proto-fibrils and subsequently fibrillation. Therefore the surface should have an optimal charge density to be an effective inhibitor of fibrillation.

Graphical abstract: Effect of substrate charge density on the adsorption of intrinsically disordered protein amyloid β40: a molecular dynamics study

Supplementary files

Article information

Article type
Paper
Submitted
02 Dec 2022
Accepted
31 Jan 2023
First published
01 Feb 2023

Soft Matter, 2023,19, 1642-1652

Effect of substrate charge density on the adsorption of intrinsically disordered protein amyloid β40: a molecular dynamics study

P. Kalipillai, E. Raghuram and E. Mani, Soft Matter, 2023, 19, 1642 DOI: 10.1039/D2SM01581A

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