Issue 18, 2020

Circumvention of common labelling artefacts using secondary nanobodies

Abstract

A standard procedure to study cellular elements is via immunostaining followed by optical imaging. This methodology typically requires target-specific primary antibodies (1.Abs), which are revealed by secondary antibodies (2.Abs). Unfortunately, the antibody bivalency, polyclonality, and large size can result in a series of artifacts. Alternatively, small, monovalent probes, such as single-domain antibodies (nanobodies) have been suggested to minimize these limitations. The discovery and validation of nanobodies against specific targets are challenging, thus only a minimal amount of them are currently available. Here, we used STED, DNA-PAINT, and light-sheet microscopy, to demonstrate that secondary nanobodies (1) increase localization accuracy compared to 2.Abs; (2) allow direct pre-mixing with 1.Abs before staining, reducing experimental time, and enabling the use of multiple 1.Abs from the same species; (3) penetrate thick tissues more efficiently; and (4) avoid probe-induced clustering of target molecules observed with conventional 2.Abs in living or poorly fixed samples. Altogether, we show how secondary nanobodies are a valuable alternative to 2.Abs.

Graphical abstract: Circumvention of common labelling artefacts using secondary nanobodies

Associated articles

Supplementary files

Article information

Article type
Paper
Submitted
08 Jan 2020
Accepted
17 Apr 2020
First published
24 Apr 2020
This article is Open Access
Creative Commons BY license

Nanoscale, 2020,12, 10226-10239

Circumvention of common labelling artefacts using secondary nanobodies

S. Sograte-Idrissi, T. Schlichthaerle, C. J. Duque-Afonso, M. Alevra, S. Strauss, T. Moser, R. Jungmann, S. O. Rizzoli and F. Opazo, Nanoscale, 2020, 12, 10226 DOI: 10.1039/D0NR00227E

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