Issue 1, 2009
From the journal:

Molecular BioSystems

Dynamical effects of epigenetic silencing of 14-3-3σ expression†

Julio Vera,‡*a   Julia Schultz,‡b   Saleh Ibrahim,c   Yvonne Raatz,d   Olaf Wolkenhauera  and  Manfred Kunzd  

* Corresponding authors

a Systems Biology and Bioinformatics Group, Department of Computer Science, University of Rostock, 18051 Rostock, Germany
E-mail: julio.vera@uni-rostock.de
Web: www.sbi.uni-rostock.de
Fax: (+49) 381 498 75 72
Tel: (+49) 381 498 76 81

b Department of Medical Biochemistry and Molecular Biology, University of Rostock, 18057 Rostock, Germany

c Department of Dermatology, Allergology and Venereology, University of Schleswig-Holstein, Campus Lübeck, 23538 Lübeck, Germany

d Comprehensive Center for Inflammation Medicine, University of Schleswig-Holstein, Campus Lübeck, 23538 Lübeck, Germany

Abstract

The development and progression of malignant tumours are often due to deregulated cell cycle control involving a plethora of different molecules. Among these, tumour suppressor proteins like p53 play a crucial role. p53 induces 14-3-3σ, a multifunctional protein kinase inhibitor, centrally involved in cell cycle control and DNA damage repair after genotoxic stress. Recently, it has been shown that 14-3-3σ is epigenetically silenced in a variety of tumours, which might contribute to tumour development and progression via impaired cell cycle control. In addition, p53, its inhibitor MDM2 and 14-3-3σ form a signalling module in which 14-3-3σ positively regulates the activity of p53 through feedback regulation. Here we present a mathematical model integrating the effects of 14-3-3σ gene silencing, the dynamics of 14-3-3σ induction and compartmentalisation by genotoxic stress and the role of interacting molecules p53 and MDM2. In vitro experiments with different melanoma cell lines were performed and our mathematical model was subjected to computer simulations to analyse different scenarios of activation depending on genemethylation status and DNA damage levels. Our analysis indicates that 14-3-3σ expression is silenced by high genemethylation, but also that strong stimulation is necessary to induce 14-3-3σ expression in cases of intermediate levels of genemethylation. More intriguingly, the model suggests that epigenetic silencing of 14-3-3σ affects p53 dynamics in a synergistic way, such that the accumulative effect of partial downregulation of p53 expression and reduction of its nuclear fraction could affect drastically the activity of p53 as a transcription factor.

Graphical abstract: Dynamical effects of epigenetic silencing of 14-3-3σ expression

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Article information

DOI
https://doi.org/10.1039/B907863K
Article type
Paper
Submitted
20 Apr 2009
Accepted
24 Aug 2009
First published
25 Sep 2009

Mol. BioSyst., 2009,6, 264-273

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Dynamical effects of epigenetic silencing of 14-3-3σ expression

J. Vera, J. Schultz, S. Ibrahim, Y. Raatz, O. Wolkenhauer and M. Kunz, Mol. BioSyst., 2009, 6, 264 DOI: 10.1039/B907863K

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