Issue 35, 2006

How are the ready and unready states of nickel–iron hydrogenase activated by H2? A density functional theory study

Abstract

We have explored possible mechanisms for the formation of the catalytically active Nia–S state of the enzyme, nickel iron hydrogenase, from the Ni*r (ready) or Ni*u (unready) state, by reaction with H2, using density functional theory calculations with the BP86 functional in conjunction with a DZVP basis set. We find that for the reaction of the ready state, which is taken to have an –OH bridge, the rate determining step is the cleavage of H2 at the Ni3+ centre with a barrier of ∼15 kcal mol−1. We take the unready state to have a –OOH bridge, and find that reaction with H2 to form the Nir–S state can proceed by two possible routes. One such path has a number of steps involving electron transfer, which is consistent with experiment, as is the calculated barrier of ∼19 kcal mol−1. The alternative pathway, with a lower barrier, may not be rate determining. Overall, our predictions give barriers in line with experiment, and allow details of the mechanism to be explored which are inaccessible from experiment.

Graphical abstract: How are the ready and unready states of nickel–iron hydrogenase activated by H2? A density functional theory study

Supplementary files

Article information

Article type
Paper
Submitted
07 Jun 2006
Accepted
17 Jul 2006
First published
27 Jul 2006

Phys. Chem. Chem. Phys., 2006,8, 4086-4094

How are the ready and unready states of nickel–iron hydrogenase activated by H2? A density functional theory study

P. Jayapal, M. Sundararajan, I. H. Hillier and N. A. Burton, Phys. Chem. Chem. Phys., 2006, 8, 4086 DOI: 10.1039/B608069C

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