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Phylogenetic analysis of Antrodia and related taxa based on partial mitochondrial SSU rDNA sequences

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Abstract

Sequences of mitochondrial SSU rDNA were obtained from six species of Antrodia and related fungal taxa to reveal their phylogenetic relationships. Phylogenetic analysis showed that the species of Antrodia did not cluster into a single clade. Brown rot fungi were separated into two main groups through which Antrodia was dispersed. Antrodia sinuosa, A. serialis, A. heteromorpha and A. malicola clustered with Perenniporia, Fomitopsis, Piptoporus, Daedalea and Melanoporia within one group of brown rot fungi, while A. carbonica and A. vaillantii clustered with Oligoporus, Gloeophyllum and Auriporia within the other group of brown rot fungi, indicating that Antrodia is a heterogeneous genus and that brown rot fungi have evolved convergently.

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References

  • Alexopoulos C.J., Mims C.W. and Blackwell M. 1996. Introductory mycology. 4th edn. John Wiley & Sons, New York.

    Google Scholar 

  • Bigelow D.M., Gilbertson R.L. and Matheron M.E. 1998. Cultural studies of brown rot in heartwood of living lemon trees in Arizona. Mycol. Res. 102: 257–262.

    Article  Google Scholar 

  • Boidin J., Mugnier J. and Canales R. 1998. Taxonomie moleculaire des aphyllophorales. Mycotaxon 66: 445–491.

    Google Scholar 

  • Bruns T.D. and Szaro T.M. 1992. Rate and mode differences between nuclear and mitochondrial small subunit rRNA genes in mushrooms. Mol. Biol. Evol. 9: 836–855.

    PubMed  CAS  Google Scholar 

  • Chang T.T. and Chou W.N. 1995. Antrodia cinnamomoea sp nov on Cinnamomum kanehirai in Taiwan. Mycol. Res. 99: 756–758.

    Google Scholar 

  • Corner E.J.H. 1989. Ad Polyporaceas VI: The genus Trametes. Beih. Nova Hedwigia 97: 1–197.

    Google Scholar 

  • Cummings D.J., Domenico J.J., Nelson J. and Sigin M.L. 1989. DNA sequence, structure, and phylogenetic relationships of the small subunit rRNA coding region of mitochondrial DNA from Podospora anserina. J. Mol. Evol. 28: 232–241.

    Article  PubMed  CAS  Google Scholar 

  • Donk M.A. 1964. The conspectus of the families of the Aplyllophorales. Persoonia 3: 337–343.

    Google Scholar 

  • Donk M.A. 1966. Notes on European polypores-I. Persoonia 4: 337–343.

    Google Scholar 

  • Donk M.A. 1968. The generic names proposed for Polyporaceae. J Cramer, Berlin.

    Google Scholar 

  • Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783–791.

    Article  Google Scholar 

  • Gilbertson R.L. 1980. Wood-rotting fungi of North America. Mycologia 72: 1–49.

    Google Scholar 

  • Gilbertson R.L. 1981. North American wood-rotting fungi that cause brown rots. Mycotaxon 12: 372–416.

    Google Scholar 

  • Gilbertson R.L. and Ryvarden L. 1986. North American polypores, Vol 1. Abortiporus – Lindtneria. Fungiflora, Oslo.

  • Ginns J. 1984. New names, new combinations, & new synonymy in the Corticiaceae, Hymenochaetaceae, & Polyporaceae. Mycotaxon 21: 325–333.

    Google Scholar 

  • Gonzalez P. and Labarere J. 2000. Phylogenetic relationships of Pleurotus species according to the sequence and secondary structure of the mitochondrial small subunit rRNAV4,V6 and V9 domains. Microbiology 146: 209–221.

    PubMed  CAS  Google Scholar 

  • Hibbett D.S. and Donoghue M.J. 1995. Progress toward a phylogenetic analysis of the Polyporaceae through parsimony analysis of mitochondrial ribosomal DNA sequences Can. J. Bot. 73: S853–S861.

    CAS  Google Scholar 

  • Hibbett D.S. and Donoghue M.J. 2001. Analysis of character correlations among wood decay mechanisms, mating systems, and substrate ranges in homobasidiomycetes. Syst. Biol. 50: 215–242.

    Article  PubMed  CAS  Google Scholar 

  • Hibbett D.S., Pine E.M., Langer E., Langer G. and Donoghue M.J. 1997. Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences. Proc. Natl. Acad. Sci. USA 94: 12002–12006.

    Article  PubMed  CAS  Google Scholar 

  • Hibbett D.S. and Thorn R.G. 2001. Basidiomycota: Homobasidiomycetes. In: McLaughlin D.J., McLaughlin E.G. and Lemke P.A. (eds), Systematics and evolution, The Mycota VII Part B. Springer-Verlag, Berlin Heidelberg, pp. 121–168.

    Google Scholar 

  • Jülich W. 1981. Higher taxa of Basidiomycetes. Bibl. Mycol. 85: 1–485.

    Google Scholar 

  • Kim S.Y. and Jung H.S. 1999. Molecular taxonomy of Ceriporia. Mycotaxon 70: 237–246.

    Google Scholar 

  • Kishino H. and Hasegawa M. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. Mol. Evol. 29: 170–179.

    Article  CAS  Google Scholar 

  • Ko K.S., Hong S.G. and Jung H.S. 1997. Phylogenetic analysis of Trichaptum based on nuclear 18S, 58S, and ITS ribosomal DNA sequences. Mycologia 89: 727–734.

    CAS  Google Scholar 

  • Ko K.S. and Jung H.S. 1999a. Phylogenetic re-evaluation of Trametes consors based on mitochondrial small subunit ribosomal DNA sequences. FEMS Microbiol. Lett. 170: 181–186.

    Article  PubMed  CAS  Google Scholar 

  • Ko K.S. and Jung H.S. 1999b. Molecular phylogeny of Trametes and related genera. Antonie van Leeuwenhoek 75: 191–199.

    Article  PubMed  CAS  Google Scholar 

  • Lombard F.F. 1990. A cultural study of several species of Antrodia (Polyporaceae, Aphyllophorales). Mycologia 82: 185–191.

    Google Scholar 

  • Maddison W.P. and Maddison D.R. 1992. MacClade,Version 3.04. Sinauer Associates, Inc. Publ., Sunderland.

    Google Scholar 

  • Nobles M.K. 1958. A rapid test for the extracellular oxidase in cultures of wood-inhabiting Hymenomycetes. Can. J. Bot. 36: 91–99.

    Article  CAS  Google Scholar 

  • Nobles M.K. 1965. Identification of cultures of wood-inhabiting Hymenomycetes. Can. J. Bot. 43: 1097–1139.

    Google Scholar 

  • Nobles M.K. 1971. Cultural characters as a guide to the taxonomy of the Polyporaceae. In: Petersen R.H. (ed.), Evolution in the higher Basidiomycetes. The University of Tennessee Press, Knoxville, pp. 169–196.

    Google Scholar 

  • Redhead S.A. and Ginns J.H. 1985. A reappraisal of agaric genera associated with brown rots of wood. Trans. Mycol. Soc. Japan. 26: 349–381.

    Google Scholar 

  • Ryvarden L. 1976–1978. Polyporaceae of North Europe. Volume 1–2. Fungiflora, Oslo.

  • Ryvarden L. 1991. Genera of polypores: Nomenclature and taxonomy. Syn. Fung. 5: 1–363.

    Google Scholar 

  • Ryvarden L. and Gilbertson R.L. 1993. European polypores, Part 1. Abortiporus – Lindtneria. Syn. Fung. 6: 1–387.

    Google Scholar 

  • Stalpers J.A. 1978. Identification of wood-inhabiting Aphyllophorales in pure culture. Stud. Mycol. 16: 1–248.

    Google Scholar 

  • Swofford D.L. 1999. PAUP*: Phylogenetic analysis using parsimony,Version 4.0b4a. Sinauer Associates, Inc. Publ., Sunderland.

    Google Scholar 

  • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F. and Higgins D.G. 1997. The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 24: 4876–4882.

    Article  Google Scholar 

  • White T.J., Bruns T., Lee S. and Taylor T.W. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Sninsky J.J. and White T.J. (eds), PCR protocols: A guide to methods and applications. Academic Press, New York, pp. 315–322.

    Google Scholar 

  • Yao Y.J., Pegler D.N. and Chase M.W. 1999. Application of ITS (nrDNA) sequences in the phylogenetic study of Tyromyces s.l. Mycol. Res. 10: 219–229.

    Article  Google Scholar 

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Authors and Affiliations

  1. Laboratory of Cell Biology, Korea Research Institute of Bioscience and Biotechnology, Taejon, 305-600, Korea

    S.Y. Kim

  2. Department of Pathology, Columbia University College of Physicians and Surgeons, New York, 10032, USA

    S.Y. Kim

  3. Laboratory of Microbiology, Ulsan Medical College, Seoul, 138-736, Korea

    S.Y. Park

  4. Department of Microbiology and Cancer Research Center, Seoul National University College of Medicine, Seoul, 110-799, Korea

    K.S. Ko

  5. School of Biological Sciences, Seoul National University, Seoul, 151-742, Korea

    H.S. Jung

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  1. S.Y. Kim
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  4. H.S. Jung
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Correspondence to H.S. Jung.

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Kim, S., Park, S., Ko, K. et al. Phylogenetic analysis of Antrodia and related taxa based on partial mitochondrial SSU rDNA sequences. Antonie Van Leeuwenhoek 83, 81–88 (2003). https://doi.org/10.1023/A:1022993703799

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