Skip to main content
Log in

Assessment of genetic variability in grapefruits (Citrus paradisi Macf.) and pummelos (C. maxima (Burm.) Merr.) using RAPD and SSR markers

  • Published:
Euphytica Aims and scope Submit manuscript

Abstract

The genetic variability of 38 grapefruit (Citrus paradisi Macf.) and three pummelos (C. maxima (Burm.) Merr..) accessions was evaluated using RAPD, and single sequence repeat (SSR) analyses. Approximately49% of the 198 RAPD were polymorphic, and 4.6 alleles per SSR loci were identified. PIC values changed from 0.093 to 0.450. A UPGMA phenetic tree was constructed and two main grapefruit groups were identified. The grapefruit accessions `do Cabo' and `Siamesa-Filipinas'clustered very close to the pummelos in Group A. The Group B consisted of three sub-groups, which comprised all of the other grapefruit accessions. The majority of grapefruit accessions showed a narrow genetic base suggesting that the observed morphological polymorphism within the group must be associated with somatic mutations, which were not detected by these molecular markers.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

References

  • Anon., 1998. Production Yearbook - 1998, FAO, Rome.

    Google Scholar 

  • Beidler, L.L., P.R. Hilliard & R.L. Rill, 1982 Ultrasensitive staining of nucleic acids with silver. Analyt Biochem 126: 374–380.

    Article  PubMed  CAS  Google Scholar 

  • Cameron, S.W. & H.B. Frost, 1968. Genetics, breeding, and nucellar embryony. In: W. Reuther, L.D. Batchelor & H.J. Webber (Eds.), The Citrus Industry, pp. 325–389, vol. 2. University of California, USA.

    Google Scholar 

  • Coletta Filho, H.D., M.A. Machado, M.L.P.N. Targon, M.C.P.Q.D.G. Moreira & J. Pompeu Jr, 1998. Analysis of the genetic diversity among mandarins (Citrus spp.) using RAPD markers. Euphytica 102: 133–139.

    Article  CAS  Google Scholar 

  • Cristofani, M., R.V. Brondani, V.M. Novelli & M.A. Machado, 1998. Desenvolvimento de marcadores microssatélites para análise genética em citros. Genet Mol Biol 21: 222.

    Google Scholar 

  • Echt, C.S., G.G. Vendramin, C.D. Nelson & P. Marquardt, 1999. Microsatellite DNA as shared genetic markers among conifer species. Can J Res 29: 365–371.

    Article  CAS  Google Scholar 

  • Gmitter, F.G., Jr. 1993. 'Marsh' Grapefruit. Fruit Var J 47: 130–133.

    Google Scholar 

  • Halldén, C., M. Hansen, N.O. Nilsson, A. Hjerdin & T. Säll, 1996. Competition as a source of errors in RAPD analysis. Theor Appl Genet 93: 1185–1192.

    Article  Google Scholar 

  • Hodgson, R.W., 1967. Horticultural varieties of Citrus. In: W. Reuther, H.J. Webber and L.D. Batchelor (Eds.), The Citrus Industry, pp. 431–591, vol. 1. University of California, USA.

    Google Scholar 

  • Katzir, N., Y. Danin-Poleg, G. Tzuri, Z. Karchi, U. Lavi & P.B. Cregan, 1996. Length polymorphism and homologies of microsatellites in several Cucurbitaceae species. Theor Appl Genet 93: 1282–1290.

    Article  CAS  Google Scholar 

  • Kijas, J.M.H., M.R. Thomas, J.C.S. Fowler & M.L. Roose, 1997. Introduction of trinucleotide microsatellites into a linkage map of Citrus. Theor Appl Genet 94: 701–706.

    Article  CAS  Google Scholar 

  • Kumamoto, J., R.W. Scora, H.W. Lawton & W.A. Clerx, 1987. Mystery of the forbidden fruit: historical epilogue on the origin of grapefruit, Citrus paradisi (Rutacea). Econ Bot 41: 97–107.

    Google Scholar 

  • Liu, B., 1998. Statistical Genomics: Linkage, Mapping, and QTL Analysis, pp. 156–162. CRC Press LLC, Boca Raton.

    Google Scholar 

  • Luro, F., F. Laigrent, J.M. Bové & P. Ollitrault, 1995. DNA Amplified fingerprinting, a useful tool for determination of genetic origin and diversity analysis in Citrus. HortScience 30: 1063–1067.

    CAS  Google Scholar 

  • Machado, M.A., H.D. Coletta Filho, M.L.P.N. Targon & J. Pompeu Jr, 1996. Genetic relationship of Mediterranean mandarins (Citrus deliciosa Tenore) using RAPD markers. Euphytica 92: 321–326.

    Article  Google Scholar 

  • Müller, G.W. & Costa, A.S. 1977. Tristeza control in Brazil by preimmunization with mild strains. In: Congress International Society of Citriculture, Orlando, USA, 1977. Proc Int Soc for Citriculture 3: 868–872.

    Google Scholar 

  • Murray, M.G. & Thompson, W.F., 1980. Rapid isolation of high molecular weight plant DNA. Nucl Acds Res 8: 4321–4325.

    CAS  Google Scholar 

  • Novelli, V.M., M.A. Machado & M. Cristofani, 1999. Marcadores microssatélites (SSR-Simple Sequence Repeats) na identificação de cultivares de laranja doce. Genet Mol Biol 22: 724.

    Google Scholar 

  • Orford, S.J., N.S. Scot & J.M. Timmis, 1995. A hypervariable middle repetitive DNA sequence from citrus. Theor Appl Genet 91: 1248–1252.

    Article  CAS  Google Scholar 

  • Rafalski, J.A., S.V. Tingey & J.G.K. Williams, 1991. RAPD markers - a new technology for genetic mapping and plant breeding. Ag Biotech News Info 3: 645–648.

    Google Scholar 

  • Rohlf, F.J., 1992. Numerical Taxonomy and Multivariate Analysis System. Version 1.70. Exeter Software, Seatauket, N.Y.

    Google Scholar 

  • Rongwen, J., M.S. Akkaya, A.A. Bhagwat, U. Lavi & P.B. Cregan, 1995. The use of microsatellite DNA markers for soybean genotype identification. Theor Appl Genet 90: 43–48.

    Article  CAS  Google Scholar 

  • Saghai Maroof, M.A., R.B. Biyashev, G.P. Yang, Q. Zang & R.W. Allard, 1994. Extraordinarily polymorphic microsatellite DNA in barley: species diversity, chromosomal locations, and population dynamics. Proc Natl Acad Sci USA 91: 5466–5470.

    Article  PubMed  CAS  Google Scholar 

  • Scora, R.W., J. Kumamoto, R.K. Soost & E.M. Nauer, 1982. Contribution to the origin of grapefruit, Citrus paradisi (Rutaceae). Syst Bot 7: 170–177.

    Article  Google Scholar 

  • Swingle, W.T., 1943. The botany of citrus and its wild relatives of the orange subfamily. In: W. Reuther, H.J. Webber & L.D. Batchelor (Eds.), The Citrus Industry, pp. 129–474, vol. 1 (1st Edn), University of California, USA.

    Google Scholar 

  • Thomas, M.R. & N.S. Scott, 1993. Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequencetagged sites (STSs). Theor Appl Genet 86: 985–990.

    CAS  Google Scholar 

  • Vardi, A., 1988. Application of recent taxonomical approaches and new techniques to citrus breeding. Proc Int Soc Citriculture 1: 303–308.

    Google Scholar 

  • Wilkie, S.E., P.G. Isaac & R.J. Slater, 1993. Random amplified polimorphic DNA (RAPD) markers for genetic analysis in Allium. Theor Appl Genet 86: 497–504.

    Article  CAS  Google Scholar 

  • Wu, K. & S.D. Tanksley, 1993. Abundances, polymorphisms and genetic mapping of microsatellites in rice. Mol Gen Genet 241: 225–235.

    Article  PubMed  CAS  Google Scholar 

  • Yamamoto, M., S. Kobayashi, Y. Nakamura & Y. Yamada, 1993. Phylogenic relationships of Citrus revealed by RFLP analysis of mitochondrial and chloroplast DNA. Japan J Breed 43: 355–365.

    CAS  Google Scholar 

  • Yang, G.P., M.A. Saghai Maroof, C.G. Xu & Q. Zhang, 1994. Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice. Mol Gen Genet 245: 187–194.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Corazza-Nunes, M., Machado, M., Nunes, W. et al. Assessment of genetic variability in grapefruits (Citrus paradisi Macf.) and pummelos (C. maxima (Burm.) Merr.) using RAPD and SSR markers. Euphytica 126, 169–176 (2002). https://doi.org/10.1023/A:1016332030738

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1016332030738

Navigation