Abstract
A new method to measure 1J(Ni,Cα i) and 2J(Ni,Cα (i − 1)) coupling constants in proteins based on a J-modulated sensitivity enhanced HSQC was introduced. Coupling constants were measured in the denatured and in the native state of ubiquitin and found to depend on the conformation of the protein backbone. Using a combined data set of experimental coupling constants from ubiquitin and staphylococcal nuclease (Delaglio et al., 1991), the angular dependence of the coupling constants on the backbone angles ψand φwas investigated. It was found that the size of 2J(Ni,Cα (i − 1)) correlates strongly with the backbone conformation, while only a weak conformational dependence on the size of 1J(Ni,Cα i) coupling constants was observed. Coupling constants in the denatured state of ubiquitin were uniform along the sequence of the protein and not dependent on a given residue type. Furthermore it was shown that the observed coupling constants were in good agreement with predicted coupling constants using a simple model for the random coil.
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Bax, A., Vuister, G.W., Grzesiek, S., Delaglio, F., Wang, A.C., Tschudin, R. and Zhu, G. (1994) Meth. Enzymol., 239, 79–105.
Bevington, P.R. (1969) In Data reduction and Error Analysis for the Physical Sciences, McGraw-Hill, New York, NY, pp. 195–203.
Billeter, M., Neri, D., Otting, G., Qian, Y.Q. and Wüthrich, K. (1992) J. Biomol. NMR, 2, 257–274.
Bronstein, I.N. and Semendjajew, K.A. (1989) In Taschenbuch der Mathematik, 24th edn., Verlag Harri Deutsch, Thun amp; Frankfurt/M., pp. 24–27.
Bystrov, V.P. (1976) Prog. NMR Spectrosc., 10, 44–81.
Cornilescu, G., Delaglio, F. and Bax, A. (1999) J. Biomol. NMR, 13, 289–302.
Cornilescu, G., Marquardt, J.L., Ottiger, M. and Bax, A (1998) J. Am. Chem. Soc., 120, 6836–6837.
Delaglio, F., Torchia, D.A. and Bax, A. (1991) J. Biomol. NMR, 1, 439–466. 55
Edison, A.S., Markley, J.L. and Weinhold, F. (1994a) J. Biomol. NMR, 4, 519–542.
Edison, A.S., Weinhold, F., Westler, W.M., and Markley, J.L. (1994b) J. Biomol. NMR, 4, 543–551.
Emsley, L. and Bodenhausen, G. (1990) Chem. Phys. Lett., 165, 469–476.
Heikkinenen, S., Permi, P. and Kilpeläinen, I. (2001) J. Magn. Reson., 148, 53–60.
Hennig, M., Bermel, W., Schwalbe, H. and Griesinger, C. (2000) J. Am. Chem. Soc., 122, 6268–6277.
Hennig, M., Bermel, W., Spencer, A., Dobson, C.M., Smith, L.J. and Schwalbe, H. (1999) J. Mol. Biol., 288, 705–723.
Juranić, N. and Macura, S. (2001) J. Am. Chem. Soc., 123, 4099–4100.
Kay, L.E., Ikura, M., Tschudin, A. and Bax, A. (1991) J. Magn. Reson., 89, 496–514.
Kuboniwa, H., Grzesiek, S., Delaglio, F. and Bax, A. (1994) J. Biomol. NMR, 4, 871–878.
Konradi, R., Billeter, M. and Wüthrich, K. (1996) J. Mol. Graphics, 14, 52–55.
Loll, P.J. and Lattman E.E. (1989) Proteins, 5, 183–201.
Meissner, A., Duus, J. Ø. and Sørensen O.W. (1997) J. Biomol. NMR, 10, 89–94.
Neri, D., Otting, G. and Wüthrich, K. (1990) J. Am. Chem. Soc., 112, 3663–3665.
Mierke, D.F., Gradolnik, S.G. and Kessler, H. (1992) J. Am. Chem. Soc., 114, 8283–8284.
Permi, P. and Annila, A. (2000) J. Biomol. NMR, 16, 221–227.
Permi, P., Rosevar, P.R. and Annila, A. (2000) J. Biomol. NMR, 17, 43–54.
Peti, W., Hennig, M., Smith, L.J. and Schwalbe, H. (2000) J. Am. Chem. Soc., 122, 12017–12018.
Peti, W., Smith, L.J., Redfield, C. and Schwalbe, H. (2001) J. Biomol. NMR, 19, 153–165.
Schwalbe, H., Fiebig, K.M., Buck, M., Jones, J.A., Grimshaw, S.B., Glaser, S.J., Smith, L.J. and Dobson, C.M. (1997) Biochemistry, 36, 8977–8991.
Shaka, A.J., Barker P.B. and Freeman R. (1985) J. Magn. Reson., 64, 547–552.
Smith, L.J., Bolin, K.A., Schwalbe, H., MacArthur, M.W., Thornton, J.M. and Dobson, C.M. (1996) J. Mol. Biol., 255, 494–506.
Tjandra, N. and Bax, A. (1997) J. Magn. Reson., 124, 512–515.
Tjandra, N., Grzesiek, S. and Bax, A. (1996) J. Am. Chem. Soc., 118, 6264–6272.
Vuister, G.W., Delaglio, F. and Bax, A. (1993) J. Biomol. NMR, 3, 67–80.
Wang, A.C., Grzesiek, S., Tschudin, R., Lodi, P.J. and Bax, A. (1995) J. Biomol. NMR, 5, 376–382.
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Wirmer, J., Schwalbe, H. Angular dependence of 1J(Ni,Cα i) and 2J(Ni,Cα (i − 1)) coupling constants measured in J-modulated HSQCs. J Biomol NMR 23, 47–55 (2002). https://doi.org/10.1023/A:1015384805098
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DOI: https://doi.org/10.1023/A:1015384805098