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Exploring the Origin and Genetic Diversity of the Giant Reed, Arundo donax in South Africa

Published online by Cambridge University Press:  21 March 2017

Kim Canavan*
Affiliation:
Doctoral Student, Researcher, and Professor, Department of Entomology and Zoology, Rhodes University, P.O. Box 94, Grahamstown, South Africa
Iain D. Paterson
Affiliation:
Doctoral Student, Researcher, and Professor, Department of Entomology and Zoology, Rhodes University, P.O. Box 94, Grahamstown, South Africa
Martin P. Hill
Affiliation:
Doctoral Student, Researcher, and Professor, Department of Entomology and Zoology, Rhodes University, P.O. Box 94, Grahamstown, South Africa
*
*Corresponding author’s E-mail: kanavan3@gmail.com
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Abstract

The giant reed, Arundo donax is one of the worst invasive alien species globally, including South Africa, where it invades riparian areas across the country. Biological control is being considered to address the invasive potential and negative impacts of the weed. This study investigated the phylogeography of A. donax to guide the biological control program. To determine plant haplotype and genetic diversity, three regions of the chloroplast were sequenced and three microsatellite markers were analyzed in 40 samples from across the plant’s distribution in South Africa. It was determined that all populations of A. donax in South Africa were haplotype M1, which is the most widely distributed haplotype worldwide, believed to originate from the Indus Valley, Asia. In addition, no genetic diversity was found, indicating that all the A. donax populations in South Africa are essentially one clone. The results indicate that suitable biological control agents are likely to be found in the ancient native range of haplotype M1. This research has contributed to the global understanding of the phylogeography of A. donax and will guide the biological control program in South Africa.

Type
Research and Education
Copyright
© Weed Science Society of America, 2017 

Alien species are often categorized as being either archaeophytes (species introduced at the beginning of the Neolithic period, 1500 B.C.E.) or neophytes (taxa spread after 1500 C.E.) (Pyšek et al. Reference Pyšek, Richardson, Rejmánek, Webster, Williamson and Kirschner2004). However, labeling a species as such is complex and necessitates looking at the phylogeography of the species. For example, archaeophytes can become neophytes with the introduction of new genetic material that can lead to novel genotypes (Saltonstall Reference Saltonstall2002). One such example has been found in the tall-statured grass, giant reed (Arundo donax L.), which has long been accepted as an archaeophyte in areas such as the Mediterranean region; however, with improved molecular work, it has become apparent that the reed can become a neophyte when recent and multiple introduction events occur (Tarin et al. Reference Tarin, Pepper, Goolsby, Moran, Arquieta, Kirk and Manhart2013). This has important implications concerning the genetic diversity of the species and the subsequent invasive potential in the introduced range that can be used to inform management of the species.

Box 1 Management Implications

The use of molecular-based techniques has proven to be an important tool in managing invasive alien species. In particular, the application of genetics in discerning the native range of invasive weeds has aided in efforts to understand the adaptive potential and population structure of invasive species. Furthermore, this information can play a critical role in guiding biological control programs that rely on determining the native range of an invasive plant to find suitable biological control agents. The invasive giant reed (Arundo donax L.) is being considered for a biological control program in South Africa, and this study aimed to use molecular-based techniques to inform this management approach. It was determined that A. donax populations have no genetic diversity and belong to haplotype M1, which is known to have an ancient origin in Afghanistan and Pakistan in the Indus Valley and is now found worldwide, including North America. From this, it is now possible to make use of the extensive studies that have already been conducted on haplotype M1 to find suitable biological control agents from the native range to introduce to North America. Much of this research will be applicable to South African populations due to a shared haplotype, and thus a number of potential biological control agents can now be considered for release in the country.

Arundo donax is a tall, perennial, reedlike grass that is one of the most biologically productive plants worldwide, reaching heights of 6 to 8 m (Angelini et al. Reference Angelini, Ceccarini and Bonari2005; Cosentino et al. Reference Cosentino, Copani, D’Agosta, Sanzone and Mantineo2006). It has intentionally been distributed worldwide as a result of its wide range of uses, most notably for erosion control, musical instruments, crafts, and as a building material (Bell Reference Bell1997; Cosentino et al. Reference Cosentino, Copani, D’Agosta, Sanzone and Mantineo2006; Dudley Reference Dudley2000). In areas where A. donax has been introduced, particularly in tropical and warm-temperate regions, it has naturalized, and in many areas, including the subtropical United States through Mexico, the Caribbean islands, South America, the Pacific Islands, Australia, and South Africa, it has become highly invasive (Dudley Reference Dudley2000; Else 1996; Haddadchi et al. 2013; Quinn and Holt Reference Quinn and Holt2008). Within these introduced ranges, A. donax can only reproduce asexually, but despite this, the reed is highly adaptable to a wide range of conditions such as varying soil types, salinity, and drought (Calheiros et al. Reference Calheiros, Quitério, Silva, Crispim, Brix, Moura and Castro2012; Lewandowski et al. Reference Lewandowski, Scurlock, Lindvall and Christou2003; Tracy and DeLoach Reference Tracy and DeLoach1998).

Arundo donax is widespread and abundant throughout the African continent (Milton Reference Milton2004). It was deliberately introduced into South Africa in the late 1700s, primarily for erosion control (Guthrie Reference Guthrie2007). The reed spread throughout the country as vegetative growth was facilitated by anthropogenic activities, including building of dams and soil stabilization; it has since become one of the worst invasive alien species in the country and is now present in all nine provinces (Guthrie Reference Guthrie2007; Van der Merwe et al. Reference Van der Merwe, Schoonbee and Pretorius1990; van Wilgen et al. Reference van Wilgen, Nel and Rouget2007). The reed has been listed as a Category 1 invasive alien species according to the National Environmental Management: Biodiversity Act (NEMBA, Act No. 10 of 2004) (Henderson 2001; van Wilgen et al. Reference van Wilgen, Nel and Rouget2007). Category 1 plants are prohibited from being sold or planted, and additional efforts are needed to keep the plant under control (Henderson 2001). Using climate envelope models, a study by Rouget et al. (Reference Rouget, Richardson, Nel, Le Maitre, Egoh and Mgidi2004) estimated that 79% of South Africa, Lesotho, and Swaziland is potentially suitable for A. donax to invade. To address the invasive threat and impacts of A. donax, control options are being considered that include investigating the potential of biological control. However, before such management can be considered, it is important to first address the plant’s phylogeography in the region to help guide this process.

Arundinoideae is one of the most unresolved grass subfamilies, historically known as the dustbin group by taxonomists (Barker et al. Reference Barker, Linder and Harley1995; Hardion et al. Reference Hardion, Verlaque, Baumel, Juin and Vila2012; Linder et al. Reference Linder, Verboom and Barker1997). For A. donax this is further complicated by the fact that the reeds are a “cryptogenic species,” and thus its true origin is highly debated, as the biogeographic and evolutionary origin of the species is obscured through ancient cultivation (Mariani et al. Reference Mariani, Cabrini, Danin, Piffanelli, Fricano, Gomarasca, Dicandilo, Grassi and Soave2010). Two lineages of A. donax have been identified based on genetic analyses: European and Asian/Middle Eastern populations (Mariani et al. Reference Mariani, Cabrini, Danin, Piffanelli, Fricano, Gomarasca, Dicandilo, Grassi and Soave2010). In Asian populations, A. donax was found to have viable seeds, and thus there is a relatively high degree of genetic variation (Hardion et al. Reference Hardion, Verlaque, Baumel, Juin and Vila2012). In Europe, however, A. donax stands are sterile, and thus there is lower genetic diversity compared with Asian populations (Lewandowski et al. Reference Lewandowski, Scurlock, Lindvall and Christou2003). It is believed that these populations reflect a genetic subset of populations from Asia and thus represent a genetic bottleneck (Ahmad et al. Reference Ahmad, Liow, Spencer and Jasieniuk2008; Hardion et al. Reference Hardion, Verlaque, Baumel, Juin and Vila2012). This most likely occurred when particular genotypes were selected and spread such that, over time, a single clone was being cultivated worldwide (Ahmad et al. Reference Ahmad, Liow, Spencer and Jasieniuk2008).

The genetic lineages found in A. donax and their species immigration history may have important consequences for the evolutionary processes that regulate the species’ geographic range and consequent invasive potential. The evolutionary mechanisms that drive range expansion in invasive alien species are highly complex and for the most part not fully understood; however, it is generally agreed that a plant’s ability to adapt is driven by genetic diversity (Holt Reference Holt2003; Kirkpatrick and Barton Reference Kirkpatrick and Barton1997; Vendramin et al. Reference Vendramin, Fady, González-Martínez, Hu, Scotti, Sebastiani, Soto, Petit, Vendramin and Fady2008). Multiple introductions of a species into an area can overcome bottleneck effects by providing novel alleles and new genetic combinations (Chapman et al. Reference Chapman, Parh and Oraguzie2000; Pérez de la Vega et al. Reference Pérez de la Vega, García and Allard1991). With increased genetic diversity, plants are expected to have increased adaptability; for example, the invasive reed canarygrass (Phalaris arundinacea L.) in North America has been found to have increased genetic variation due to multiple introductions from the native range, resulting in rapid selection of novel genotypes that allow for adaptation (Lavergne and Molofsky Reference Lavergne and Molofsky2007). Similarly, A. donax has been found to have increased genetic diversity where there have been multiple introduction events; for example, Tarin et al. (Reference Tarin, Pepper, Goolsby, Moran, Arquieta, Kirk and Manhart2013) determined that, although there is likely only one clonal lineage in North America, there is microsatellite marker evidence for different populations within this lineage as a result of introductions from different sources. Such immigration history in A. donax may be an important factor in the plant’s adaptability in the adventive range.

Finally, determining the phylogeography of A. donax will serve as an important tool in managing the species, particularly in guiding biological control. The use of molecular techniques to discern the native range of a species has shown to have great potential in biological control, as there is growing evidence that herbivores are sensitive to plant genotype (Bhattarai Reference Bhattarai2015; Cronin et al. Reference Cronin, Kiviat, Meyerson, Bhattarai and Allen2016; Lambert and Casagrande Reference Lambert and Casagrande2007). For example, a study by Goolsby et al. (Reference Goolsby, De Barro, Makinson, Pemberton, Hartley and Frohlich2006) used genetics to investigate the role of coevolution on the invasive Old World climbing fern [Lygodium microphyllum (Cav.) R. Br.] and the phytophagous mite (Floracarus perrepae Knihinicki & Boczek) in the United States. Herbivore transfer experiments determined that F. perrepae were most effective at inducing galls in the climbing fern plant haplotypes from the same native range (Goolsby et al. Reference Goolsby, De Barro, Makinson, Pemberton, Hartley and Frohlich2006). The determination of a strong geographical pattern in mite–fern associations supported the theory of local adaptations (Ehrlich and Raven Reference Ehrlich and Raven1964) and further helped guide biological control to optimize host exploitation in the correct region of origin. Genetic techniques are thus important to help ensure that biological control agents are selected from plants in the correct area of introduction so they will be locally adapted (Goolsby et al. Reference Goolsby, De Barro, Makinson, Pemberton, Hartley and Frohlich2006; Roderick Reference Roderick2004).

To date, no work has been carried out on determining the native origin of A. donax populations in South Africa and how these populations are genetically structured compared with populations elsewhere in the world. With a biological control program being proposed, this study assessed the phylogeography of A. donax in South Africa with the aim of contributing to the knowledge of the founder history of this invasive species and to obtain a better understanding of its reproduction and dispersal mechanisms.

Materials and Methods

Sampling and DNA Extraction

Leaf tissue was collected from the young apical leaves of A. donax during the growing season. Samples were collected from across the distribution of A. donax in South Africa (Figure 1). Fresh leaves were dried in silica gel according to the protocol of Chase and Hills (Reference Chase and Hills1991). DNA was extracted using the Qiagen DNeasy® Plant Mini Kit (Valencia, CA). The Qiagen protocol was modified in that leaf tissue was ground dry in liquid nitrogen before the addition of the extraction buffer.

Figure 1 Map of South Africa showing site locations of samples (Appendix S1) and Arundo donax distribution according to Fish et al. (Reference Fish, Mashau, Moeaha and Nembudani2015).

cpDNA

Plastid DNA diversity was assessed by amplifying and sequencing three intergenic spacers: trnT (UGU) to trnL (UAA) (Taberlet et al. Reference Taberlet, Gielly, Pautou and Bouvet1991), rbcL to psaI, and trnS(GCU) to psbD (Saltonstall Reference Saltonstall2001) using the methods of Hardion et al. (2014). Ten picomoles of forward and reverse primers were added to 12.5 μl of Promega MasterMix (Madison, WI) (reaction concentration of 1 U of Taq, 1.5mM MgCl2, and 0.2 μM dNTPS), 2 μl of Promega MgCl2, and 7 μl of template DNA per reaction. Promega nuclease-free water was added to reach a final volume of 25 μl. Amplifications were performed in one of the following machines: Labnet Multigene II (Labnet International, Edison, NJ) or Applied Biosystems 2720 thermal cycler (Applied Biosystems™, Foster City, CA). For the trnLb region (trnT to trnL), the PCR cycling protocol was 94 C for 2 min, 35 cycles of 94 C for 1 min, 56 C for 1 min, 72 C for 2 min, followed by a final extension at 72 C for 5 min. PCR products were cleaned at Inqaba Biotec™, Johannesburg, South Africa. Cycle sequencing reactions were done using BigDye Terminator v. 3.1 Cycle Sequencing Kit (Applied Biosystems™) with the same primers as used in the PCR reactions. Cycle-sequencing products were purified using ethanol-sodium acetate precipitation. Capillary electrophoresis was done using an ABI 3500® (Applied Biosystems™) genetic analyzer at Inqaba Biotec™.

Microsatellites

Three microsatellite primers developed by Tarin et al. (Reference Tarin, Pepper, Goolsby, Moran, Arquieta, Kirk and Manhart2013) for A. donax in the native (Old World) and introduced (North America) ranges were used (Appendix S2); these markers were selected because they were found to have the highest number of alleles in the Old World and North America. PCR reactions contained 10 pmoles of forward and reverse primers, 12.5 μl of Promega MasterMix (Madison, WI) (reaction concentration of 1 U of Taq, 1.5mM MgCl2, and 0.2 μM dNTPS), 2 μl of Promega MgCl2, and 7 μl of template DNA per reaction. Promega nuclease-free water was added to reach a final volume of 25 μl. Amplifications were performed in one of the following machines: Labnet Multi Gene II (Labnet International) or Applied Biosystems 2720 thermal cycler (Applied Biosystems™). The PCR cycling protocol was 98 C for 30 s, 30 cycles of 98 C for 10 s, 55–62 C for 30 s, 72 C for 15 s, followed by a final extension at 72 C for 5 min. Primers were fluorescently labeled by Applied Biosystems™, South Africa. PCR products were diluted 20 times with Promega nuclease-free water and sent to Inqaba Biotec™, Johannesburg, South Africa for analysis. Capillary electrophoresis of DNA fragments was done using an ABI 3500® (Applied Biosystems™) genetic analyzer at Inqaba Biotec™.

To determine an error rate for the microsatellite analysis as recommended by Bonin et al. (Reference Bonin, Bellemain, Bronken Eidesen, Pompanon, Brochmann and Taberlet2004), a subset of samples were duplicated (30%). Finally, to avoid subjectivity in scoring of peaks, any peaks that were ambiguous and any stutter peaks were scored as missing data.

Data Analysis

Chloroplast DNA chromatograms were examined, and contiguous sequences were assembled and manually edited in GeneStudio™ v. 2.2.0.0. (GeneStudio, Suwanee, GA). Alignment of sequences was done in MEGA v. 5.2.2, using ClustalW set to default parameters (Kumar et al. Reference Kumar, Stecher, Peterson and Tamura2012), and included all worldwide haplotypes downloaded from GenBank.

For microsatellite data, chromatogram alignment was first conducted with Geneious v. 8.1.7 (Kearse et al. Reference Kearse, Moir, Wilson, Stones-Havas, Cheung, Sturrock, Buxton, Cooper, Markowitz, Duran, Thierer, Ashton, Meintjes and Drummond2012). The chromatogram ladders were all aligned to ensure peaks were registered in the same position. The data set was entered into a diploid binary matrix (1=presence, 0=absence of homologous alleles) and analyzed using GenAIEx v. 6.5 (Peakall and Smouse Reference Peakall and Smouse2012).

Results

The analysis of chloroplast sequences for A. donax revealed that all samples from across South Africa were haplotype M1 from Hardion et al. (2014). TrnT-trnL samples aligning with TL5 (accession number: KF169820) and rbcL-psaI samples aligning with L16 (accession number: KF169810) and trnS-psbD samples aligning with accession number: KF169824. No variation in the chloroplast sequences was found across all samples.

Of the four biogeographical clusters determined by Hardion et al. (2014), the South African A. donax groups with the Middle East biogeographic cluster. Haplotype M1 is the most common haplotype worldwide and was found in 28 samples in the Mediterranean and Irano-Touranian regions; the haplotype was also found in New Caledonia, Peru, and North America (Hardion et al. Reference Hardion, Verlaque, Saltonstall, Leriche and Vila2014). The most closely related haplotypes are M2, M3, and M4, which are found in Afghanistan and Pakistan in the Indus Valley (Hardion et al. Reference Hardion, Verlaque, Saltonstall, Leriche and Vila2014).

All plants sampled across South Africa shared a single multilocus genotype. All populations were found to share the same genotype, and in addition, all replicated samples were found to have no variation in the peaks amplified. The study found an error rate of zero. South African samples had a low number of alleles, particularly when considering the allelic diversity from studies of populations in the Old World (native range) and introduced range (New World) (Table 1). There was no genetic diversity found across all populations of A. donax in South Africa. Tarin et al. (Reference Tarin, Pepper, Goolsby, Moran, Arquieta, Kirk and Manhart2013) also found no genetic diversity within populations in North America and Israel (Table 2). From this, it was determined that using only three of Tarin et al.’s (2013) microsatellite markers was sufficient, as they highlighted the genetic uniformity in populations, and including more markers would most likely not show any significant differences across populations.

Table 1 The number of alleles found for each marker for A. donax in the Old World (native range) compared with the introduced ranges in North America and South Africa.a

a Data for populations outside South Africa were sourced from Tarin et al. (Reference Tarin, Pepper, Goolsby, Moran, Arquieta, Kirk and Manhart2013).

Table 2 Comparison of the genetic diversity of A. donax in New World populations (introduced) and Old World populations (native range) and a comparison of clonality within populations (separate genets in separate locations) and how these compare with populations in South Africa.a

a Data for populations outside South Africa were sourced from Tarin et al. (Reference Tarin, Pepper, Goolsby, Moran, Arquieta, Kirk and Manhart2013).

Discussion

Arundo donax is believed to represent one of the world’s oldest plant invasions (Hardion et al. Reference Hardion, Verlaque, Saltonstall, Leriche and Vila2014). For thousands of years, A. donax has been a favored plant for a variety of uses and selected genotypes were chosen and distributed worldwide (Goolsby et al. Reference Goolsby, Moran, Adamczyk, Kirk, Jones, Marcos and Cortés2009). Within these adventive ranges, A. donax does not reproduce sexually and thus relies on vegetative growth (Khudamrongsawat et al. Reference Khudamrongsawat, Tayyar and Holt2009). All of these factors have contributed to a lack of genetic diversity in A. donax outside the Asian/Middle Eastern populations (Flores and Wood Reference Flores and Wood2009; Khudamrongsawat et al. Reference Khudamrongsawat, Tayyar and Holt2009; Saltonstall et al. Reference Saltonstall, Lambert and Meyerson2010). The results from this study are similar to those found in other parts of the plant’s introduced distribution, with only one haplotype (haplotype M1) being found across South Africa and populations being found to be genetically uniform.

The Mediterranean region is the source of about 60% of all naturalized alien grasses in southern Africa (Milton Reference Milton2004). The success of these Mediterranean plants can be attributed to bioclimatic suitability (Groves and Di Castri Reference Groves and Di Castri1991) and also to the fact that, with European settlers, there was a high volume of re-introductions of plants (Milton Reference Milton2004). Arundo donax is one such plant that was recorded to have been taken from populations in the Mediterranean in the late 1700s (Milton Reference Milton2004; Perdue Reference Perdue1958). Support for this was found in this study, wherein A. donax in South Africa was found to share the same haplotype (haplotype M1) as Mediterranean populations. South African populations thus likely belong to the European A. donax lineage, which is a genetic subset of populations from Asia (Ahmad et al. Reference Ahmad, Liow, Spencer and Jasieniuk2008; Hardion et al. Reference Hardion, Verlaque, Baumel, Juin and Vila2012).

Records show that A. donax was most likely introduced multiple times since the 1700s (Guthrie Reference Guthrie2007); however, only one microsatellite phenotype was found across all populations in South Africa. Such low genetic diversity is surprising considering the history of the plant. Two alternate hypotheses can be drawn from this: (1) a specific clone was selected from the Mediterranean, and (2) a lack of sexual reproduction after initial establishment may have resulted in a decay in genotypic diversity over time until one genotype drifted to fixation in the populations, as has been found in other clonal plants (Le Roux et al. Reference Le Roux, Wieczorek, Wright and Tran2007; Parker Reference Parker1979). Haplotype M1, found in the Mediterranean region, is known to have low genetic diversity; Mariani et al. (Reference Mariani, Cabrini, Danin, Piffanelli, Fricano, Gomarasca, Dicandilo, Grassi and Soave2010) found no spatial pattern of genetic variation in A. donax in the region. Furthermore, studies of haplotype M1 have determined that populations of A. donax in North America and France have the same DNA profile (Ahmad et al. Reference Ahmad, Liow, Spencer and Jasieniuk2008). Unlike other plant species, the distribution of genotypes for A. donax is for the most part not a natural process but instead mediated by human activity (Mariani et al. Reference Mariani, Cabrini, Danin, Piffanelli, Fricano, Gomarasca, Dicandilo, Grassi and Soave2010). Therefore, when the same genotypes are found across large distances, this can be interpreted as a recent dispersal through trade for anthropogenic purposes (Mariani et al. Reference Mariani, Cabrini, Danin, Piffanelli, Fricano, Gomarasca, Dicandilo, Grassi and Soave2010). In South Africa, the distribution of A. donax reflects a human-mediated spread in which a single clone has most likely been cultivated across the country.

Arundo donax genetic diversity reflects a genetic bottleneck and is thus a good model for studying genetically depauperate species (Ahmad et al. Reference Ahmad, Liow, Spencer and Jasieniuk2008). Genetically depauperate plant species can be defined based on the overall species nuclear diversity H being lower than 0.05; this corresponds to the heterozygosity of a locus whose most frequent allele exceeds 0.97 (Vendramin et al. Reference Vendramin, Fady, González-Martínez, Hu, Scotti, Sebastiani, Soto, Petit, Vendramin and Fady2008). Genetically depauperate species present challenges to long-established views of genetics and the importance of genetic diversity (Vendramin et al. Reference Vendramin, Fady, González-Martínez, Hu, Scotti, Sebastiani, Soto, Petit, Vendramin and Fady2008). The genetic uniformity of A. donax is surprising considering the cosmopolitan nature of the plant, because different habitats are more likely to be occupied by differentially adapted clones rather than single clones (Godt et al. Reference Godt, Walker and Hamrick1997). One of the few other examples of this is the Italian stone pine (Pinus pinea L.), which has only one Mediterranean-wide haplotype (Vendramin et al. Reference Vendramin, Fady, González-Martínez, Hu, Scotti, Sebastiani, Soto, Petit, Vendramin and Fady2008). As with A. donax, the plant’s distribution and ability to spread is more a result of a suitable disperser (attributed to human movement for cultivation dating back to 3000 B.C.E.) rather than genetic variation (Fallour et al. Reference Fallour, Fady and Lefevre1997; Vendramin et al. Reference Vendramin, Fady, González-Martínez, Hu, Scotti, Sebastiani, Soto, Petit, Vendramin and Fady2008).

Genetically depauperate invasive alien species raise important questions on the role of genetic diversity in invasive potential. Founding plant populations generally have little genetic diversity and generate low intrapopulational genetic variation after range expansion (Burdon and Marshall Reference Burdon and Marshall1981; Le Roux et al. Reference Le Roux, Wieczorek, Wright and Tran2007). It is now believed that their success and ability to adapt can largely be attributed to phenotypic plasticity rather than genetic differentiation (Thompson et al. Reference Thompson, McNeilly and Gray1991), which is termed a “general-purpose genotype” (Van Doninck et al. Reference Van Doninck, Schön, De Bruyn and Martens2002). Successful clones are believed to possess more broadly adapted (general purpose) genotypes compared with sexual taxa (Baker Reference Baker1967).

The “general-purpose theory” is likely a good model to explain the expansion of A. donax in South Africa given its lack of genetic diversity. Arundo donax can tolerate a wide range of environmental conditions, including variations in moisture, temperature, and salinity (Saltonstall et al. Reference Saltonstall, Lambert and Meyerson2010; Tracy and DeLoach Reference Tracy and DeLoach1998), and is also one of the fastest-growing plants worldwide, having growth rates of up to 10 cm d−1 (Lewandowski et al. Reference Lewandowski, Scurlock, Lindvall and Christou2003; Seawright et al. Reference Seawright, Rister, Lacewell, McCorkle, Sturdivant, Yang and Goolsby2009). This high phenotypic plasticity is believed to have allowed the plant to persist and invade adventive ranges worldwide (Quinn and Holt Reference Quinn and Holt2008). There are a number of examples of genetically depauperate invasive alien grasses, including common cordgrass [Spartina anglica (C. E. Hubbard)], which has low genetic diversity in the United Kingdom and France (Thompson et al. Reference Thompson, McNeilly and Gray1991), and crimson fountain grass [Pennisetum setaceum (Forssk.) Chiov.], which has a single invasive haplotype (Le Roux et al. Reference Le Roux, Wieczorek, Wright and Tran2007; Thompson et al. Reference Thompson, McNeilly and Gray1991). For these species, it is likely that plasticity is the mechanism allowing them to become invasive in the introduced range (Le Roux et al. Reference Le Roux, Wieczorek, Wright and Tran2007; Thompson et al. Reference Thompson, McNeilly and Gray1991).

Determining the genetic diversity and haplotypes present in A. donax populations in South Africa has important implications for the future of the biological control program. First, determining the haplotype present in South Africa allowed insight into the ancestral lineage of these populations. The nearest relative of the invasive haplotype M1 is in Afghanistan and Pakistan along the Indus Valley (haplotypes M2, M3, and M4) (Hardion et al. Reference Hardion, Verlaque, Saltonstall, Leriche and Vila2014). A search for biological control agents suitable for South Africa should thus focus on monophagous herbivores in this region. Second, information on genetic diversity should give an indication of how the biological control agents are more likely to adapt and potentially resist herbivory. Plants with higher genetic diversity are able to adapt and resist herbivory (Fritz and Simms Reference Fritz and Simms1992). Therefore, plants that have low genetic diversity are more likely to suffer from herbivory, as they have limited evolutionary potential for adaptability and defense against agents (Muller-Scharer et al. Reference Muller-Scharer, Schaffner and Steinger2004; Tarin et al. Reference Tarin, Pepper, Goolsby, Moran, Arquieta, Kirk and Manhart2013).

Biological control agents for A. donax in South Africa should be those adapted to the worldwide haplotype M1. These could be sourced from other countries with biological control programs against this haplotype or from the center of origin of the haplotype in the Indus Valley. Agents adapted to haplotype M1 will be suitable for all the A. donax in South Africa due to the clonal nature of the plant in the country. Two biological control agents were released on haplotype M1 A. donax in the United States, the eurytomid wasp (Tetramesa romana Walker) and the armored scale (Rhizaspidiotus donacis Leonardi) in 2010 (Goolsby et al. Reference Goolsby, Kirk, Moran, Racelis, Adamczyk, Cortes, Marcos, Jimenez, Summy, Ciomperlik and Sands2011). It is too soon to evaluate their impact on A. donax populations in the region; however, laboratory-based impact studies have shown that both agents have the potential to reduce plant growth and spread (Cortes et al. Reference Cortes, Goolsby, Moran and Marcos-García2011; Moore et al. Reference Moore, Watts and Goolsby2010; Moran et al. Reference Moran, Goolsby, Racelis, Cohen, Ciomperlik, Summy, Sands and Kirk2013). As such, these agents should be considered for biological control in South Africa.

Acknowledgments

Funding for this work was provided by the South African Research Chairs Initiative of the Department of Science and Technology and the National Research Foundation of South Africa. Any opinion, finding, conclusion, or recommendation expressed in this material is that of the authors, and the NRF does not accept any liability in this regard.

Supplementary materials

To view supplementary material for this article, please visit https://doi.org/10.1017/inp.2016.5

Footnotes

Associate Editor: Jacob N. Barney, Virginia Tech.

References

Literature Cited

Ahmad, R, Liow, P, Spencer, DF, Jasieniuk, M (2008) Molecular evidence for a single genetic clone of invasive Arundo donax in the United States. Aquat Bot 88:113120 CrossRefGoogle Scholar
Angelini, LG, Ceccarini, L, Bonari, E (2005) Biomass yield and energy balance of giant reed (Arundo donax L.) cropped in central Italy as related to different management practices. Eur J Agron 22:375389 Google Scholar
Baker, HHG (1967) Support for Baker’s law-as a rule. Evolution (NY) 21:853856 CrossRefGoogle ScholarPubMed
Barker, NP, Linder, HP, Harley, EH (1995) Polyphyly of Arundinoideae (Poaceae): evidence from rbcL sequence data. Syst Bot 20:423435 CrossRefGoogle Scholar
Bell, GP (1997) Ecology and management of Arundo donax, and approaches to riparian habitat restoration in southern California. Pages 103113 in Brock J, Wade M, Pyšek P & Green D eds. Plant Invasions: Studies from North America and Europe. Leiden, Netherlands: Backhuys Google Scholar
Bhattarai, GP (2015) Biogeographical approaches for studying species invasion. Ph.D dissertation. Baton Rouge, LA: Louisiana State UniversityGoogle Scholar
Bonin, A, Bellemain, E, Bronken Eidesen, P, Pompanon, F, Brochmann, C, Taberlet, P (2004) How to track and assess genotyping errors in population genetics studies. Mol Ecol 13:32613273 Google Scholar
Burdon, JJ, Marshall, DR (1981) Biological control and the reproductive mode of weeds. J Appl Ecol 18:649658 Google Scholar
Calheiros, CSC, Quitério, PVB, Silva, G, Crispim, LFC, Brix, H, Moura, SC, Castro, PML (2012) Use of constructed wetland systems with Arundo and Sarcocornia for polishing high salinity tannery wastewater. J Environ Manage 95:6671 CrossRefGoogle ScholarPubMed
Chapman, HM, Parh, D, Oraguzie, N (2000) Genetic structure and colonizing success of a clonal, weedy species, Pilosella officinarum (Asteraceae). Heredity (Edinb) 84:401409 CrossRefGoogle ScholarPubMed
Chase, MW, Hills, HH (1991) Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon 40:215220 Google Scholar
Cortes, E, Goolsby, JA, Moran, PJ, Marcos-García, MA (2011) The effect of the armored scale, Rhizaspidiotus donacis (Hemiptera: Diaspididae), on shoot growth of the invasive plant Arundo donax (Poaceae: Arundinoideae). Biocontrol Sci Technol 21:535545 CrossRefGoogle Scholar
Cosentino, SL, Copani, V, D’Agosta, GM, Sanzone, E, Mantineo, M (2006) First results on evaluation of Arundo donax L. clones collected in Southern Italy. Ind Crops Prod 23:212222 Google Scholar
Cronin, JT, Kiviat, E, Meyerson, LA, Bhattarai, GP, Allen, WJ (2016) Biological control of invasive Phragmites australis will be detrimental to native P. australis . Biol Invasions 18:27492752 CrossRefGoogle Scholar
Dudley, TL (2000) Arundo donax L. Pages 5358 in Bossard CC, Randall JM & Hoshovsky MC eds. Invasive Plants of : California’s Wildlands. Berkeley: University of California Press Google Scholar
Else, JA (1996) Post-flood establishment of native woody species and an exotic, Arundo donax, in a southern Californian riparian system. M.Sc. dissertation. San Diego, CA: San Diego State University Google Scholar
Ehrlich, PR, Raven, PH (1964) Butterflies and plants: a study in coevolution. Evolution (NY) 18:586608 CrossRefGoogle Scholar
Fallour, D, Fady, B, Lefevre, F (1997) Study on isozyme variation in Pinus pinea L.: evidence for low polymorphism. Silvae Genet 46:201206 Google Scholar
Fish, L, Mashau, A, Moeaha, M, Nembudani, M (2015) Identification Guide to Southern African Grasses. An Identification Manual with Keys, Descriptions and Distributions. Pretoria: South African National Biodiversity Institute Google Scholar
Flores, A, Wood, M (2009) Biocontrol battle begins against giant reed (Arundo). Agric Res 57:1214 Google Scholar
Fritz, R, Simms, E (1992) Plant resistance to herbivores and pathogens: ecology, evolution, and genetics. Science 259:16311632 Google Scholar
Godt, MJW, Walker, J, Hamrick, JL (1997) Genetic diversity in the endangered lily Harperocallis flava and a close relative Tofieldia racemosa . Conserv Biol 11:361366 Google Scholar
Goolsby, JA, De Barro, PJ, Makinson, JR, Pemberton, RW, Hartley, DM, Frohlich, DR (2006) Matching the origin of an invasive weed for selection of a herbivore haplotype for a biological control programme. Mol Ecol 15:287297 CrossRefGoogle ScholarPubMed
Goolsby, JA, Kirk, AA, Moran, PJ, Racelis, AE, Adamczyk, JJ, Cortes, E, Marcos, MA, Jimenez, MM, Summy, KR, Ciomperlik, MA, Sands, DPA (2011) Establishment of the armored scale, Rhizaspidiotus donacis, a biological control agent of Arundo donax . Southwest Entomol 36:373374 Google Scholar
Goolsby, JA, Moran, PJ, Adamczyk, JJ, Kirk, AA, Jones, WA, Marcos, MA, Cortés, E (2009) Host range of the European, rhizome-stem feeding scale Rhizaspidiotus donacis (Hemiptera: Diaspididae), a candidate biological control agent for giant reed, Arundo donax (Poales: Poaceae) in North America. Biocontrol Sci Technol 19:899918 CrossRefGoogle Scholar
Groves, RH, Di Castri, F (1991) Biogeography of Mediterranean Invasions. Cambridge: Cambridge University Press Google Scholar
Guthrie, G (2007) Impacts of the invasive reed Arundo donax on biodiversity at the community-ecosystem level. M.Sc. dissertation. Cape Town, Western Cape: University of the Western CapeGoogle Scholar
Haddadchi, A, Gross, CL, Fatemi, M (2013) The expansion of sterile Arundo donax (Poaceae) in southeastern Australia is accompanied by genotypic variation. Aquat Bot 104:153161 Google Scholar
Hardion, L, Verlaque, R, Baumel, A, Juin, M, Vila, B (2012) Revised systematics of Mediterranean Arundo (Poaceae) based on AFLP fingerprints and morphology. Taxon 61:12171226 Google Scholar
Hardion, L, Verlaque, R, Saltonstall, K, Leriche, A, Vila, B (2014) Origin of the invasive Arundo donax (Poaceae): a trans-Asian expedition in herbaria. Ann Bot 114:455462 CrossRefGoogle ScholarPubMed
Henderson, L (2001) Alien Weeds and Invasive Plants. A complete guide to declared weeds and invaders in South Africa. Pretoria: Agricultural Research Council, Plant Protection Research Institute Google Scholar
Holt, RD (2003) On the evolutionary ecology of species’ ranges. Evol Ecol Res 5:159178 Google Scholar
Kearse, M, Moir, R, Wilson, A, Stones-Havas, S, Cheung, M, Sturrock, S, Buxton, S, Cooper, A, Markowitz, S, Duran, C, Thierer, T, Ashton, B, Meintjes, P, Drummond, A (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:16471649 Google Scholar
Khudamrongsawat, J, Tayyar, R, Holt, JS (2009) Genetic diversity of giant reed (Arundo donax) in the Santa Ana River, California. Weed Sci 52:395405 CrossRefGoogle Scholar
Kirkpatrick, M, Barton, NH (1997) Evolution of a species’ range. Am Nat 150:123 Google Scholar
Kumar, S, Stecher, G, Peterson, D, Tamura, K (2012) MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis. Bioinformatics 28:26852686 Google Scholar
Lambert, AM, Casagrande, RA (2007) Susceptibility of native and non-native common reed to the non-native mealy plum aphid (Homoptera: Aphididae) in North America. Environ Entomol 36:451457 Google Scholar
Lavergne, S, Molofsky, J (2007) Increased genetic variation and evolutionary potential drive the success of an invasive grass. Proc Natl Acad Sci USA 104:38833888 Google Scholar
Le Roux, JJ, Wieczorek, AM, Wright, MG, Tran, CT (2007) Super-genotype: global monoclonality defies the odds of nature. PLoS One 2:e590 Google Scholar
Lewandowski, I, Scurlock, JMO, Lindvall, E, Christou, M (2003) The development and current status of perennial rhizomatous grasses as energy crops in the US and Europe. Biomass Bioenergy 25:335361 Google Scholar
Linder, HP, Verboom, GA, Barker, NP (1997) Phylogeny and evolution in the Crinipes Group of grasses (Arundinoideae: Poaceae). Kew Bull 52:91110 Google Scholar
Mabberley, DJ (1997) The Plant-Book. Cambridge: Cambridge University Press Google Scholar
Mariani, C, Cabrini, R, Danin, A, Piffanelli, P, Fricano, A, Gomarasca, S, Dicandilo, M, Grassi, F, Soave, C (2010) Origin, diffusion and reproduction of the giant reed (Arundo donax L.): a promising weedy energy crop. Ann Appl Biol 157:191202 Google Scholar
Milton, SJ (2004) Grasses as invasive alien plants in South Africa: working for water. S Afr J Sci 100:6975 Google Scholar
Moore, GW, Watts, DA, Goolsby, JA (2010) Ecophysiological responses of giant reed (Arundo donax) to herbivory. Invasive Plant Sci Manag 3:521529 CrossRefGoogle Scholar
Moran, PJ, Goolsby, JA, Racelis, AE, Cohen, AC, Ciomperlik, MA, Summy, KR, Sands, DP, Kirk, AA (2013) Mass rearing of the stem-galling wasp Tetramesa romana, a biological control agent of the invasive weed Arundo donax . Pages 163201 in Morales-Ramos JA, Shapiro-Ilan D & Rojas G eds. Mass-Rearing of Beneficial Organisms. San Diego, CA: Elsevier Google Scholar
Muller-Scharer, H, Schaffner, U, Steinger, T (2004) Evolution in invasive plants: implications for biological control. Trends Ecol Evol 19:417422 Google Scholar
Parker, ED (1979) Ecological implications of clonal diversity in parthenogenetic morphospecies. Integr Comp Biol 19:753762 Google Scholar
Peakall, R, Smouse, PE (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update. Bioinformatics 28:25372539 CrossRefGoogle ScholarPubMed
Perdue, RE (1958) Arundo donax—source of musical reeds and industrial cellulose. Econ Bot 12:368404 CrossRefGoogle Scholar
Pérez de la Vega, M, García, P, Allard, RW (1991) Multilocus genetic structure of ancestral Spanish and colonial Californian populations of Avena barbata . Proc Natl Acad Sci USA 88:12021206 Google Scholar
Pyšek, P, Richardson, DM, Rejmánek, M, Webster, GL, Williamson, M, Kirschner, J (2004) Alien plants in checklists and floras: towards better communication between taxonomists and ecologists. Taxon 53:131143 CrossRefGoogle Scholar
Quinn, LD, Holt, JS (2008) Ecological correlates of invasion by Arundo donax in three southern California riparian habitats. Biol Invasions 10:591601 Google Scholar
Roderick, GK (2004) Tracing the origin of pests and natural enemies: genetic and statistical approaches. Pages 97112 in Ehler LE, Sforza R & Mateille T eds. Genetics, Evolution and Biological Control. CAB eBooks Google Scholar
Rouget, M, Richardson, DM, Nel, JL, Le Maitre, DC, Egoh, B, Mgidi, T (2004) Mapping the potential ranges of major plant invaders in South Africa, Lesotho and Swaziland using climatic suitability. Divers Distrib 10:475484 Google Scholar
Saltonstall, K (2001) A set of primers for amplification of noncoding regions of chloroplast DNA in the grasses. Mol Ecol Notes 1:7678 Google Scholar
Saltonstall, K (2002) Cryptic invasion by a non-native genotype of the common reed, Phragmites australis, into North America. Proc Natl Acad Sci USA 99:24452449 Google Scholar
Saltonstall, K, Lambert, A, Meyerson, LA (2010) Genetics and reproduction of common (Phragmites australis) and giant reed (Arundo donax). Invasive Plant Sci Manag 3:495505 Google Scholar
Seawright, EK, Rister, ME, Lacewell, RD, McCorkle, DA, Sturdivant, AW, Yang, C, Goolsby, JA (2009) Economic implications for the biological control of Arundo donax: Rio Grande Basin. Southwest Entomol 34:377394 Google Scholar
Taberlet, P, Gielly, L, Pautou, G, Bouvet, J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol 17:11051109 Google Scholar
Tarin, D, Pepper, AE, Goolsby, JA, Moran, PJ, Arquieta, AC, Kirk, AE, Manhart, JR (2013) Microsatellites uncover multiple introductions of clonal giant reed (Arundo donax). Invasive Plant Sci Manag 6:328338 CrossRefGoogle Scholar
Thompson, JD, McNeilly, T, Gray, AJ (1991) Population variation in Spartina anglica C. E. Hubbard. II. Reciprocal transplants among three successional populations. New Phytol 117:129139 CrossRefGoogle Scholar
Tracy, JL, DeLoach, CJ (1998) Suitability of classical biological control for giant reed (Arundo donax) in the United States. Pages 73–109 in Arundo and Saltcedar Management Workshop Proceedings. Holtville: University of California Cooperative ExtensionGoogle Scholar
Van der Merwe, CG, Schoonbee, HJ, Pretorius, J (1990) Observations on concentrations of the heavy metals zinc, manganese, nickel and iron in the water, in the sediments and in two aquatic macrophytes, Typha capensis (Rohrb.) N. E. Br. and Arundo donax L., of a stream affected by goldmine and industrial effluent. Water South Africa 16:119124 Google Scholar
Van Doninck, K, Schön, I, De Bruyn, L, Martens, K (2002) A general purpose genotype in an ancient asexual. Oecologia 132:205212 Google Scholar
van Wilgen, BW, Nel, JL, Rouget, M (2007) Invasive alien plants and South African rivers: a proposed approach to the prioritization of control operations. Freshw Biol 52:711723 Google Scholar
Vendramin, GG, Fady, B, González-Martínez, SC, Hu, FS, Scotti, I, Sebastiani, F, Soto, A, Petit, R, Vendramin, GG, Fady, B, et al. (2008) Genetically depauperate but widespread: the case of an emblematic Mediterranean pine. Evolution (NY) 62:680688 Google Scholar
Figure 0

Figure 1 Map of South Africa showing site locations of samples (Appendix S1) and Arundo donax distribution according to Fish et al. (2015).

Figure 1

Table 1 The number of alleles found for each marker for A. donax in the Old World (native range) compared with the introduced ranges in North America and South Africa.a

Figure 2

Table 2 Comparison of the genetic diversity of A. donax in New World populations (introduced) and Old World populations (native range) and a comparison of clonality within populations (separate genets in separate locations) and how these compare with populations in South Africa.a

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