Data and code availability
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The authors declare that all data supporting the findings of this study are available within the article, the supplementary data, and the data repository or from the corresponding author upon reasonable request. The processed data for integrated, tumor subtype classified, malignant cell subsets, and CAF subsets are deposited with all custom codes in zenodo (https://zenodo.org/record/6024273#.Yg2eTJZUtaY). The doi listed in the key resources table.
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Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.