PDI family thioredoxin from disk abalone (Haliotis discus discus): Responses to stimulants (PAMPs, bacteria, and viral) and functional characterization
Introduction
Reactive oxygen species (ROS) are highly reactive molecules that readily react with macromolecules such as DNA and RNA. ROS comprise free radicals, like O2•−, •OH, and non-radicals, such as H2O2 and O2 [1] and are involved in several signaling pathways related to cell proliferation, metabolism, cell survival, antioxidants, anti-inflammatory reactions, ion homeostasis, and DNA damage responses [2,3]. They are generated naturally in cells during oxidative metabolism and cellular responses to xenobiotics, cytokines, and bacterial invasion. They may also be generated in response to external stimuli, such as ultraviolet rays and heat [2]. Excessive ROS can be highly toxic to cells and can lead to carcinogenesis, neurodegeneration, and aging [4]. Thioredoxin can convert oxidized ROS to its reduced form via thiol-disulfide reduction. Cellular proteins may be oxidized and malfunction as a direct response to ROS or after reacting with their derivatives generated under stress conditions [5].
The regulation of oxidative and reductive stress is essential to defend cells from ROS. Eukaryotes and prokaryotes have integrated antioxidant systems, which contain enzymatic and non-enzymatic antioxidants that are effective in impeding the injurious effects of ROS [6]. Furthermore, numerous proteins such as thioredoxin, thioredoxin domain-containing proteins, catalase, superoxide dismutase, peroxiredoxin, glutathione peroxidase, glutathione transferase, and glutaredoxin act as antioxidants [6]. Herein, we studied thioredoxin domain-containing 5 (TXNDC5), which is involved in redox homeostasis, inhibition of apoptosis, hypoxia, cell proliferation, migration, and invasion [7].
Abalones (Haliotis spp.) are important marine gastropods cultivated worldwide as a food source. The disk abalone (Haliotis discus discus) belongs to the Haliotidae family and is found in Korea, Japan, and Eastern Asia. In nature, they grow to a diameter of 100–225 mm. The abalone aquaculture industry in Korea continues to face several outbreaks of diseases caused by bacteria, viruses, and other parasites. Furthermore, unfavorable environmental factors can cause stress to cultivated abalones. Abalones are invertebrates with a primitive immune system and lack an adaptive immune system present in most vertebrates. Therefore, elucidation of their immune mechanisms is vital for developing new strategies for disease prevention.
In this study, the TXNDC5 cDNA sequence from the disk abalone transcriptome database was characterized. In silico analysis of the cDNA and protein sequence of disk abalone TXNDC5 (AbTXNDC5) was performed, and their temporal expression patterns were observed in hemocytes and gills upon being challenged by bacteria (Vibrio parahaemolyticus, Listeria monocytogenes), viral hemorrhagic septicemia virus (VHSV), and pathogen-associated molecular pattern molecules (PAMPs) (poly I:C and lipopolysaccharides). Furthermore, AbTXNDC5 expression was examined in different developmental stages, and a recombinant rAbTXNDC5 protein was synthesized to validate its functional properties.
Section snippets
Identification of disk abalone TXNDC5 sequence
The coding sequence of AbTXNDC5 was extracted from the disk abalone transcriptomic database established by Jeju National University, Republic of Korea. It was sequenced by a 454-genome Sequencer FLX machine (Roche, USA). The sequence was identified using the BLAST tool (https://blast.ncbi.nlm.nih.gov/Blast.cgi) on the National Center for Biotechnology Information (NCBI) curated database [8].
In silico analysis of the AbTXNDC5 sequence
The open reading frames (ORFs) and the deduced amino acid sequences of AbTXNDC5 were obtained from the
Molecular characterization
Homology screening of the AbTXNDC5 coding sequence was performed using NCBI databases. The sequence was deposited to the NCBI GenBank under accession number MH197145.1. As per the in silico analysis, the ORF of AbTXNDC5 is 1179 bp in length and encodes for 392 amino acids. The estimated molecular mass and predicted isoelectric point (pI) of AbTXNDC5 are 44.5 kDa and 4.89, respectively. The instability index of AbTXNDC5 is 38.69, which classifies the protein as stable. The AbTXNDC5 sequence
Discussion
PDI proteins are primarily present in the ER and comprise four tandem thioredoxin-like domains (a, b, b′, x, and a′, where a, b, b′, and a′ are thioredoxin domains and x is the linker domain). In addition to TXNDC5, more than 20 PDI proteins have been identified in human cells [13]. PDI proteins are arranged into a U-shaped structure in nature. However, TXNDC5 lacks a thioredoxin domain in the middle and exhibits an a, b, x, and a′ structure. TXNDC5 has three catalytic activities, namely
Conclusions
In conclusion, our study indicates that TXNDC5 may be an essential gene in the primary immune system and regulation of cellular redox homeostasis in abalones and might confer protection from stress. We performed an in silico analysis of Haliotis discus discus TXNDC5 using different bioinformatics tools. The spatial and temporal expressions of AbTXNDC5 were evaluated by qPCR, and the involvement of AbTXNDC5 in the host immune system was determined. We observed that AbTXNDC5 expression varied in
CRediT authorship contribution statement
D.S. Liyanage: Conceptualization, Methodology, Investigation, Writing – original draft. W.K.M. Omeka: Conceptualization, Methodology, Investigation, Writing – original draft. W.M. Gayashani Sandamalika: Validation, Writing – review & editing. H.M.V. Udayantha: Formal analysis, Writing – review & editing. Taehyug Jeong: Resources, Supervision, Data curation. Sukkyoung Lee: Resources, Supervision, Data curation. Jehee Lee: Resources, Writing – review & editing, Supervision, Project
Acknowledgments
This research was supported by the Golden Seed Project; the Ministry of Agriculture, Food and Rural Affairs (MAFRA); the Ministry of Oceans and Fisheries (MOF); the Rural Development Administration (RDA); and the Korea Forest Service (KFS) (213008-05-1-SB730).
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