Biochemical and Biophysical Research Communications
Lipase member H is a novel secreted protein selectively upregulated in human lung adenocarcinomas and bronchioloalveolar carcinomas
Introduction
Lung cancer is one of the most frequent causes of cancer-related death worldwide in both men and women [1]. By histology, lung cancer is classified into small cell lung carcinoma (SCLC) and non-small cell lung carcinoma (NSCLC). NSCLC is further classified into several major subtypes, such as adenocarcinoma (AC), squamous cell carcinoma (SCC), and large cell carcinoma (LCC). Among NSCLCs, AC is the most frequent subtype of lung cancer [2]. Many genetic alterations have been reported to be involved in the initiation and progression of lung cancer [3], [4], [5], [6]. Moreover, recent studies using DNA microarrays demonstrated that gene expression patterns were distinct for lung cancers of different histological types [7], [8]. However, molecular markers for various lung cancers have not yet been established.
In this study, we investigated novel biomarkers for lung cancer using a public microarray database. We identified lipase member H (LIPH) as one of the genes significantly upregulated in lung AC and bronchioloalveolar carcinoma (BAC). Moreover, we show that LIPH was associated with better survival in lung cancer patients.
Section snippets
Cell culture
Sixteen NSCLC cell lines including 9 AC cell lines (PC-3, PC-14, RERF-LC-KJ, RERF-LC-MS, ABC-1, RERF-LC-Ad1, RERF-LC-Ad2, VMRC-LCD, and LC-2/Ad) and 7 squamous cell carcinoma (SCC) cell lines (PC-1, LC-1 sq, RERF-LC-AI, RERF-LC-Sq1, EBC-1, HARA, and LK-2) were used in this study. PC-1 and PC-14 cells were purchased from Immuno-Biological Laboratories (Fujioka, Japan). The human small airway epithelial cells (SAECs) and normal human bronchial epithelial cells (NHBECs) were purchased from Takara
LIPH expression is upregulated in lung adenocarcinoma
To identify novel biomarker genes for lung cancer cells, we surveyed publicly available human lung cancer microarray data deposited in the NCBI GEO database. When gene expression in the lung AC and SCC was compared by bioinformatic analysis, 701 genes were identified as upregulated by more than 2-fold in AC compared to SCC (data not shown). Among these, we further selected genes encoding secretory proteins that could be detected in the sera of lung cancer patients. LIPH was identified as one of
Discussion
The LIPH gene is located within 3q.27 region of chromosome 3 long arm which is reported as one of the most frequent areas of gene amplification in NSCLC [6]. In SCC, some of the tumor driver genes such as those encoding p63, phosphatidylinositol 3-kinase C catalytic subunit isoform-α (PI3KCA), and sex-determining region Y-box 2 (Sox2) are located at 3q [10], [11], [12]. The frequency of 3q.27 amplification in SCC has been reported to be around 30% [13], [14]. In this study, we detected similar
Acknowledgments
Human lung cancer cell lines, LC-2/Ad, RERF-LC-KJ, RERF-LC-AI, EBC-1, LK-2, and Sq-1 cells were provided by the RIKEN BRC through the National Bio-Resource Project of the MEXT, Japan. ABC-1, HARA, PC-3, RERF-LC-Ad1, RERF-LC-Ad2, RERF-LC-MS, RERF-LC-Sq1, and VMRC-LCD cells were also provided from JCRB Cell Bank.
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