Chapter Two - Ribosome Biogenesis: From Structure to Dynamics
Introduction
The nucleolus is the most prominent feature of the cell nucleus. When Fontana (1781) noticed it first, he described a specific spot inside the nucleus; however, he ignored that he was observing the only point where one can exactly localize the presence of specific genes without any special techniques.
Ribosomal genes are present in many repeats which are differently amplified in different species (Cmarko et al., 2008) up to a point where it has become generally accepted to assert that two genomes existed, the nuclear genome and the nucleolar one. These two genomes work together and mutually influence each other; as it has become more and more clear in these last years, some nucleolar functions are strictly related to nuclear functions (Martin et al., 2009, Pederson & Tsai, 2009).
Many reviews have been devoted to the nucleolus, both in animal and in plant cells, and this organelle has been studied and observed under many different aspects. In this chapter, we will mainly consider the nucleolus and its activity in view of the dynamics connected to ribosome biogenesis, integrating new concepts into an old story.
Section snippets
Morphology and cytochemistry
Structure and function are, as usual, strictly related and the nucleolus is no exception.
At light microscopy, it has long been studied and some of its inner structures described; some were more or less corresponding to reality, such as the “nucleolini” described as prominent inside nucleoli and later recognized to be fibrillar centers (FCs; Love and Wildy, 1963). The nucleolar body is clearly identified in the nucleus when stained by a vital fluorescent probe such as SYTO RNASelect (S32703,
Extra situm
Nucleolar transcription has been studied extra situm since 1969 when Miller and coworkers devised a technique for spreading nucleoli. The surprising result was the presence of the transcription units in the form of Christmas trees. It was soon realized that along the DNA axis each RNA branch developed from a small knob, which was recognized to be the RNA polymerase I, while at the distal terminus of the branch, a terminal knob is present. This knob has been shown to be constituted by U3 snRNPs
Ribosome Dynamics
The proof of the nucleolar dynamism is represented by the continuous exchange of molecules between the organelle and the nucleoplasm in response to specific cellular needs. In this transfer of proteins, obviously leading to a temporary specific distribution of a factor, distinct signals or pathways should exist to determine the retention or the release of a factor from the nucleolus.
Emmott and Hiscox (2009) propose the idea that the nucleolus is assembled on the basis of a core of nucleolar
Concluding Remarks
The nucleolus is a fascinating structure, and after more than 200 years since its discovery still retains many secrets. Perhaps the most intriguing characteristics are its plasticity, and the dynamics behind. These features not only involve the spatial organization of the nucleolus but also its functions. Besides being the ribosomal factory of the cell, the nucleolus has probably several other functions and involvements, and researchers have just begun to unveil some of these roles. The next
Acknowledgments
This work was supported by the Fondo di Ateneo per la Ricerca (FAR 2009). The authors would like to thank all the people who supported them during this endless task.
This chapter is dedicated to the memory of Prof. Maria Gabriella Manfredi Romanini, who now knows all the answers.
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