Journal of Molecular Biology
Volume 162, Issue 3, 15 December 1982, Pages 679-692
Journal home page for Journal of Molecular Biology

Mechanism of action of eukaryotic DNA methyltransferase: Use of 5-azacytosine-containing DNA

https://doi.org/10.1016/0022-2836(82)90395-3Get rights and content

Abstract

Hemimethylated DNA substrates prepared from cell cultures treated with 5-azacytidine are efficient acceptors of methyl groups from S-adenosylmethionine in the presence of a crude preparation of mouse spleen DNA methyltransferase. Partially purified methyltransferase was also capable of efficiently modifying single-stranded unmethylated DNA. The methylation of single-stranded DNA was less sensitive to inhibition by salt than duplex DNA. The presence of other DNA species in the reaction mix (duplex or single-stranded, methylated or unmethylated) inhibited the modification of the hemimethylated duplex DNA. The enzyme was specific for DNA, since the presence of RNA in reaction mixtures did not inhibit the methylation of DNA. DNA methyltransferase formed a tight-binding complex with hemimethylated duplex DNA containing high levels of 5-azacytosine, and this complex was not dissociated by high concentrations of salt. Treatment of cultured cells with biologically effective concentrations of 5-azacytidine and other cytidine analogs modified in the 5 position resulted in a loss of extractable active enzyme from the cells. The amount of extractable active enzyme recovered slowly with time after treatment. These results suggest that incorporation of 5-azacytidine into DNA inhibits the progress of DNA methyltransferase along the duplex, perhaps by the formation of a tight-binding complex. This complex formation might be irreversible, so that new enzyme synthesis might be required to reverse the block of DNA methylation.

References (37)

  • R.L.P. Adams et al.

    Biochim. Biophys. Acta

    (1979)
  • A. Bensadoun et al.

    Anal. Biochem

    (1976)
  • A.P. Bird

    J. Mol. Biol

    (1978)
  • R.H. Burdon et al.

    Trends Biochem. Sci

    (1980)
  • S.J. Compere et al.

    Cell

    (1981)
  • P.G. Constantinides et al.

    Devel. Biol

    (1978)
  • F. Creusot et al.

    J. Biol. Chem

    (1982)
  • D. Drahovsky et al.

    J. Mol. Biol

    (1971)
  • D. Drahovsky et al.

    J. Mol. Biol

    (1971)
  • M. Harris

    Cell

    (1982)
  • E.F. Hartree

    Anal. Biochem

    (1972)
  • P.A. Jones et al.

    Cell

    (1980)
  • A. Kornberg
  • S.M. Taylor et al.

    Cell

    (1979)
  • M. Wigler et al.

    Cell

    (1981)
  • R.J. Britten et al.

    Methods Enzymol

    (1974)
  • J.K. Christman et al.

    Eur. J. Biochem

    (1977)
  • S. Friedman

    Mol. Pharmacol

    (1981)
  • Cited by (167)

    • The old and the new: DNA and RNA methylation in normal and malignant hematopoiesis

      2020, Experimental Hematology
      Citation Excerpt :

      HMAs are chemical analogues of cytosine, which were originally developed as cytotoxic agents [41]. However, it was quickly established that when incorporated into DNA, they function as an inhibitor of all three DNMTs [42,43]. Azacitidine covalently traps DNMTs on DNA, resulting in genomewide DNA hypomethylation through passive dilution of methylated cytosine over multiple generations of cell division [44].

    • Epigenetics: A primer for clinicians

      2016, Blood Reviews
      Citation Excerpt :

      Azanucleosides are incorporated into DNA in place of cytosine. As methylation is replicated, DNMTs become irreversibly bound to the aza-substituted ring, resulting in loss of enzyme function [192,193], passive demethylation of subsequently replicated DNA, [194–197] and gene re-expression. The unresolved reaction between the aza-substituted DNA base and the DNMT enzyme produces a bulky adduct which also results in DNA damage (described in Additional effects of these drugs below).

    • Inhibitors of DNA Methylation, Histone Deacetylation, and Histone Demethylation. A Perfect Combination for Cancer Therapy.

      2016, Advances in Cancer Research
      Citation Excerpt :

      Azacytidine and decitabine were synthesized as cytostatic agents in 1964 (Sorm, Piskala, Cihak, & Vesely, 1964) and azacytidine was later found to be a natural product of Streptoverticillium ladakanus (Bergy & Herr, 1966; Hanka, Evans, Mason, & Dietz, 1966). Early clinical trials found both compounds to be too toxic for use, but in the 1980s, it was discovered that azacytidine could induce differentiation in cultured mouse embryo cells and inhibit the methylation of newly synthesized DNA (Jones & Taylor, 1980; Taylor & Jones, 1982). Studies were also emerging from the Baylin laboratory and others in the 1980s and 1990s regarding the existence of promoter CpG island hypermethylation and the correlation with transcriptional repression.

    • Computational fishing of new DNA methyltransferase inhibitors from natural products

      2015, Journal of Molecular Graphics and Modelling
      Citation Excerpt :

      These are responsible of transferring a methyl group from S-adenosyl-l-methionine (SAM) to the carbon-5 position of cytosine in DNA. This mechanism has been proposed for several authors (Fig. 1) [6–9]. Currently, three types of cytosine-5 DNMTs have been identified, including two de novo DNA methyltransferases; DNMT3A and DNMT3B, which establish the methylation patterns during embryonic development in mammals and in differentiated cells [10,11]; and DNMT1, the most abundant and active of these enzymes responsible for copying the methylation pattern of DNA during cell division [12,13].

    View all citing articles on Scopus

    This work was supported by grant no. GM30892 from the National Institutes of Health.

    View full text