Phylogeny of Viruses☆
Keywords
Bayesian reasoning
Character-based inference
Distance-based inference
Epidemiology
Evolution
Evolutionary rate
Maximum likelihood reasoning
Molecular clock
Mutation
Phylogenetic tree
Phylogenomics
Phylogeography
Recombination
Taxonomy
Tree of Life
Further Reading
- Dolja and Koonin, 2006VV Dolja, EV Koonin (Eds.), Comparative genomics and evolution of complex viruses, Virus Research, 117 (2006), pp. 1-184
- Domingo, 2007Virus evolutionD.M. Knipe, P.M. Howley, D.E. Griffin, et al. (Eds.), Fields virology (5th edn.), Wolters Kluwer, Lippincott Williams and Wilkins, Philadelphia, PA (2007), pp. 389-421
- Domingo et al., 1999E Domingo, RG Webster, JJ Holland (Eds.), Origin and evolution of viruses, Academic Press, San Diego (1999)
- Drummond et al., 2012Bayesian phylogenetics with BEAUti and the BEAST 1.7Molecular Biology and Evolution, 29 (2012), pp. 1969-1973
- Felsenstein, 2004Inferring phylogeniesSinauer Associates, Inc, Sunderland, MA (2004)
- Gibbs et al., 1995Molecular basis of virus evolutionCambridge University Press, Cambridge (1995)
- King et al., 2012A.M.Q. King, M.J. Adams, E.B. Carstens, E.J. Lefkowitz (Eds.), Virus taxonomy: the 9th report of the international committee on taxonomy of viruses, Elsevier, Academic Press, San Diego, CA (2012)
- Lauber et al., 2013The footprint of genome architecture in the largest genome expansion in RNA virusesPLoS Pathogens, 9 (7) (2013), p. e1003500
- Moya et al., 2004The population genetics and evolutionary epidemiology of RNA virusesNature Reviews Microbiology, 2 (2004), pp. 279-288
- Page and Holmes, 1998Molecular evolution. A phylogenetic approachBlackwell Publishing, Boston (1998)
- Salemi and Vandamme, 2003M Salemi, AM Vandamme (Eds.), The phylogenetic handbook. A practical approach to DNA and protein phylogeny, Cambridge University Press, Cambridge (2003)
- Stamatakis, 2014RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogeniesBioinformatics, 30 (2014), pp. 1312-1313
- Villarreal, 2005Viruses and evolution of lifeASM Press, Washington, DC (2005)
- Weaver et al., 2016S.C. Weaver, M. Denison, M. Roosinck, M. Vignuzzi (Eds.), Virus Evolution, Current Research and Future Directions, Academic Press, Caister (2016)
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Change History: December 2016. AE Gorbalenya and C Lauber updated sections Introduction, Tree Definitions, Phylogenetic Analysis and Applications of Phylogeny in Virology, the reference section. Introduced Figures 1-4.
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