Abstract
Asthma, a chronic lung disease characterized by obstruction of airway passage is characterized by inflammation and hyperresponsiveness with increase in the number of eosinophils. Interleukin-13, plays a significant role in causing inflammation during an asthmatic attack by bronchial constriction. Mometasone, a glucocorticoid has been used as the first line of administration for people affected with asthma for almost a decade. However, in several cases, people treated with mometasone have faced systemic and local side effects. To reduce these side effects, we hypothesized vitamin D that can be used as a substitute to mometasone. For this purpose, we employed the use of molecular docking and simulation studies for comparative study. The docking studies revealed the binding residues of interleukin-13 which are bound to the active site. Among all, we noticed three binding residue Leu83, His84 and Arg86 common for both mometasone and vitamin D. Also, the binding energies share a significant similarity between them. The docked complexes of mometasone and vitamin D with interleukin-13 were evaluated with molecular dynamics simulation. Consistently, the MD analysis uncovered the interesting note on conformational adaptation between the complexes as well as that vitamin D has the complementary binding efficiency to interleukin-13 as compared to mometasone. The substitution of vitamin D might provide a promising gateway to reduce the side effects caused by mometasone and also reduce the cost for treatment of asthma patients.
Similar content being viewed by others
References
Bendl J, Stourac J, Sebestova E, Vavra O, Musil M, Brezovsky J, Damborsky J (2016) HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering. Nucleic Acids Res 44:W479–W487. https://doi.org/10.1093/nar/gkw416
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) The protein data bank. Nucleic Acids Res 28:235–242
Cave A, Arlett P, Lee E (1999) Inhaled and nasal corticosteroids: factors affecting the risks of systemic adverse effects. Pharmacol Ther 83:153–179
Dahl R (2006) Systemic side effects of inhaled corticosteroids in patients with asthma. Respir Med 100:1307–1317. https://doi.org/10.1016/j.rmed.2005.11.020
Elias JA, Lee CG, Zheng T, Shim Y, Zhu Z (2003) Interleukin-13 and leukotrienes: an intersection of pathogenetic schema. Am J Respir Cell Mol Biol 28:401–404. https://doi.org/10.1165/rcmb.F264
Gale CR, Robinson SM, Harvey NC, Javaid MK, Jiang B, Martyn CN, Godfrey KM, Cooper C (2008) Maternal vitamin D status during pregnancy and child outcomes. Eur J Clin Nutr 62:68–77. https://doi.org/10.1038/sj.ejcn.1602680
Hanania NA, Chapman KR, Kesten S (1995) Adverse effects of inhaled corticosteroids. Am J Med 98:196–208. https://doi.org/10.1016/S0002-9343(99)80404-5
Jeffrey GA, Takagi S (1978) Hydrogen-bond structure in carbohydrate crystals. Acc Chem Res 11:264–270. https://doi.org/10.1021/ar50127a002
Kahn K, Bruice TC (2002) Parameterization of OPLS-AA force field for the conformational analysis of macrocyclic polyketides. J Comput Chem 23:977–996. https://doi.org/10.1002/jcc.10051
Kelly HW, Nelson HS (2003) Potential adverse effects of the inhaled corticosteroids. J Allergy Clin Immunol 112:469–478 (quiz 479)
Majak P, Olszowiec-Chlebna M, Smejda K, Stelmach I (2011) Vitamin D supplementation in children may prevent asthma exacerbation triggered by acute respiratory infection. J Allergy Clin Immunol 127:1294–1296. https://doi.org/10.1016/j.jaci.2010.12.016
Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, Goodsell DS, Olson AJ (2009) AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility. J Comput Chem 30:2785–2791. https://doi.org/10.1002/jcc.21256
Raghuraman P, Jesu Jaya Sudan R, Lesitha Jeeva Kumari J, Sudandiradoss C (2016) Casting the critical regions in nucleotide binding oligomerization domain 2 protein: a signature mediated structural dynamics approach. J Biomol Struct Dyn. https://doi.org/10.1080/07391102.2016.1254116
Raghuraman P, Jesu Jaya Sudan R, Lesitha Jeeva Kumari J, Sudandiradoss C (2017) Systematic prioritization of functional hotspot in RIG-1 domains using pattern based conventional molecular dynamic simulation. Life Sci 184:58–70. https://doi.org/10.1016/j.lfs.2017.07.011
Schüttelkopf AW, van Aalten DMF (2004) PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. Acta Crystallogr D Biol Crystallogr 60:1355–1363. https://doi.org/10.1107/S0907444904011679
Shahin MYA, El-lawah AA, Amin A, El-Tawil IAH (2017) Study of serum vitamin D level in adult patients with bronchial asthma. Egypt J Chest Dis Tuberc 66:5–9. https://doi.org/10.1016/j.ejcdt.2016.11.005
Suissa S, Ernst P, Benayoun S, Baltzan M, Cai B (2000) Low-dose inhaled corticosteroids and the prevention of death from asthma. N Engl J Med 343:332–336. https://doi.org/10.1056/NEJM200008033430504
Tachimoto H, Mezawa H, Segawa T, Akiyama N, Ida H, Urashima M (2016) Improved control of childhood asthma with low-dose, short-term Vitamin D supplementation: A randomized, double-blind, placebo-controlled trial. Allergy Eur J Allergy Clin Immunol 71:1001–1009. https://doi.org/10.1111/all.12856
The Universal Protein Resource (UniProt) (2008) Nucleic Acids Res 36:D190–D195. https://doi.org/10.1093/nar/gkm895
Ultsch M, Bevers J, Nakamura G, Vandlen R, Kelley RF, Wu LC, Eigenbrot C (2013) Structural basis of signaling blockade by anti-IL-13 antibody Lebrikizumab. J Mol Biol 425:1330–1339. https://doi.org/10.1016/j.jmb.2013.01.024
Wills-Karp M (2004) Interleukin-13 in asthma pathogenesis. Immunol Rev 202:175–190. https://doi.org/10.1111/j.0105-2896.2004.00215.x
Wynn TA (2003) IL-13 effector functions. Annu Rev Immunol 21:425–456. https://doi.org/10.1146/annurev.immunol.21.120601.141142
Acknowledgements
The authors gratefully acknowledge VIT University, Vellore for the support through Seed Grant for this research work.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that there is no conflict of interests regarding the publication of this paper.
Rights and permissions
About this article
Cite this article
Ramireddy, S., Raghuraman, P., Khandelwal, P. et al. A molecular simulation analysis of vitamin D targets interleukin 13 (IL13) as an alternative to mometasone in asthma. 3 Biotech 8, 373 (2018). https://doi.org/10.1007/s13205-018-1394-9
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s13205-018-1394-9