Skip to main content

Advertisement

Log in

The complete mitochondrial genome sequence of Anthracoceros coronatus (Bucerotiformes: Bucerotidae)

  • Technical Note
  • Published:
Conservation Genetics Resources Aims and scope Submit manuscript

Abstract

Anthracoceros coronatus (Bucerotiformes: Bucerotidae) has been listed in near threatened category in the IUCN Red List of Threatened Species, due to population decline. Mitochondrial genome (mitogenome) sequence is informative and very useful for systematics and conservation biology studies. In this study, we first determined and characterized the complete mitogenome of A. coronatus using next-generation sequencing platform. The complete mitogenome of A. coronatus was 17,214 bp in length, with an AT ratio of 52.8%. It contained the typical structure of 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes and a non-coding control region or D-loop region, with an identical gene order to that of most other vertebrates. The complete mitogenome sequence of A. coronatus would not only provide additional molecular markers of choice for detecting illegal poaching and trafficking of this bird species, but also would contribute to phylogenomic study of hornbill birds.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455–477

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, Putz J, Middendorf M, Stadler PF (2013) MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol 69:313–319

    Article  PubMed  Google Scholar 

  • Boore JL (1999) Animal mitochondrial genomes. Nucleic Acids Res 27:1767–1780

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Chen YY, Li CQ, Yan HY, Xiao H, Chen SY (2017) The complete mitochondrial genome sequence of Buceros bicornis (Bucerotiformes: Bucerotidae). Conservation Genet Resour. doi:10.1007/s12686-017-0803-4

    Article  Google Scholar 

  • Galtier N, Nabholz B, Glémin S, Hurst GD (2009) Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Mol Ecol 18:4541–4550

    Article  PubMed  CAS  Google Scholar 

  • Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M (2013) De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc 8:1494–1512

    Article  PubMed  CAS  Google Scholar 

  • Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955–964

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Mindell DP, Sorenson MD, Dimcheff DE (1998) An extra nucleotide is not translated in mitochondrial ND3 of some birds and turtles. Mol Biol Evol 15:1568–1571

    Article  PubMed  CAS  Google Scholar 

  • Nurk S, Bankevich A, Antipov D, Gurevich A, Korobeynikov A, Lapidus A, Prjibelsky A, Pyshkin A, Sirotkin A, Sirotkin Y (2013) Assembling genomes and mini-metagenomes from highly chimeric reads. In: International conference on research in computational molecular biology, vol 7821, pp 158–170

  • Pacheco MA, Battistuzzi FU, Lentino M, Aguilar RF, Kumar S, Escalante AA (2011) Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders. Mol Biol Evol 28:1927–1942

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Que TC, Xie NW, He BX, Pan ZW, Li JM, Zhao XM, Nong RC, Nong LC (2010) Recent distribution and protection of oriental pied hornbill in GuangXi Xidaming Mountain Nature Reserve. Ecol Sci 29:417–421

    Google Scholar 

  • Ripley SD (1982) synopsis of the birds of India and Pakistan. Q Rev Biol 65:605–621

    Google Scholar 

  • Sneha V, Davidar P (2007) Observations on possible social play in the Malabar Pied Hornbill Anthracoceros coronatus at Dandeli, northern Karnataka. Indian Birds 3 6:228–230

    Google Scholar 

  • Wyman SK, Jansen RK, Boore JL (2004) Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252–3255

    Article  PubMed  CAS  Google Scholar 

  • Zacharias V, Gaston AJ (1999) The recent distribution of endemic, disjunct and globally uncommon birds in the forests of Kerala state, south-west India. Bird Conserv Int 9:191–225

    Article  Google Scholar 

Download references

Acknowledgements

We thank Mr. Zhugang Wu for collecting sample. This study was supported by the Hundred Oversea Talents Recruitment Program of Yunnan Province.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Shanyuan Chen.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Li, R., Chen, Y., Yan, H. et al. The complete mitochondrial genome sequence of Anthracoceros coronatus (Bucerotiformes: Bucerotidae). Conservation Genet Resour 10, 401–404 (2018). https://doi.org/10.1007/s12686-017-0835-9

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12686-017-0835-9

Keywords

Navigation