Skip to main content

Advertisement

Log in

Predictive modeling of elevated groundwater nitrate in a karstic spring-contributing area using random forests and regression-kriging

  • Original Article
  • Published:
Environmental Earth Sciences Aims and scope Submit manuscript

Abstract

Many of Florida’s large springs have seen an order of magnitude increase in nitrate concentration since the mid-twentieth century, which has contributed to the proliferation of nuisance algae and alteration of spring ecosystems. Cost-effective strategies to limit nitrate inputs require identification of contributing land areas within springs (springsheds) where surficial nitrogen sources are most likely to be transported to the underlying aquifer. To address spatial variability in vulnerability to nitrogen loading, spatial models specific to nitrate were developed for the Silver Springs springshed (Florida, USA). Random forest classification models were trained using an extensive (1554 wells) groundwater nitrate dataset assembled from public water system and agency monitoring data. Spatial layers representing soil hydrology, subsurface geology, recharge potential, and nitrogen sources were used as predictor variables. Random forest models produced out-of-bag error estimates of 21% or less, and variable importance plots indicated that a subset of subsurface geological predictors was the most important contributors to overall model accuracy. Although predictors representing land use and nitrogen sources contributed less to overall model accuracy, they were still important in the final spatial discrimination of the most vulnerable areas. Random forest model accuracy was further improved by kriging of model residuals, and kriged residuals were added to model estimates to produce final prediction maps. The models developed are well suited for a management decision framework for environmental restoration, as it informs the manager with maps of probabilistic information. Recognizing the potential for legacy nitrate impacts, we recommend the current models be adopted as a part of a tiered approach to restoration projects that first prioritizes critical areas using the models presented herein and subsequently uses site-specific information to verify local impacts.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  • Albertin AR, Sickman JO, Pinowska A, Stevenson RJ (2012) Identification of nitrogen sources and transformations within karst springs using isotope tracers of nitrogen. Biogeochemistry 108:219–232. https://doi.org/10.1007/s10533-011-9592-0

    Article  Google Scholar 

  • Aller L, Bennet T, Lehr JH, Petty RJ (1987) DRASTIC: a standardized system for evaluating ground water pollution using hydrological settings. US EPA document no. EPA/600/2-85-018

  • Almasri MN, Kaluarachchi JJ (2007) Modeling nitrate contamination of groundwater in agricultural watersheds. J. Hydrol 343:211–229. https://doi.org/10.1016/j.jhydrol.2007.06.016

    Article  Google Scholar 

  • Arthur J, Wood HA, Baker A, Cichon J, Raines G (2007) Development and implementation of a bayesian-based aquifer vulnerability assessment in Florida. Nat Resour Res 16:93–107. https://doi.org/10.1007/s11053-007-9038-5

    Article  Google Scholar 

  • Boniol D, Williams M, Munch D (1993) Mapping recharge to the Floridan aquifer using a geographic information system. Technical Publication SJ93-5. St Johns River Water Management District, Palatka

  • Boniol D, Davis J, Jeannee N, Stokes J (2014) Top of the Floridan aquifer system in peninsular Florida. Technical Fact Sheet SJ2014-FS1. St Johns River Water Management District, Palatka

  • Breiman L (2001) Random forests. Mach Learn 45:5–32

    Article  Google Scholar 

  • Budd DA, Vacher HL (2004) Matrix permeability of the confined Floridan aquifer, Florida, USA. Hydrogeol J 12:531–549. https://doi.org/10.1007/s10040-004-0341-5

    Article  Google Scholar 

  • Cohen MJ, Lamsal S, Korhnak LV (2007) Sources, transport and transformation of nitrate-n in the florida environment, special publication SJ2007-SP10. St. Johns River Water Management Disctrict, Palatka

    Google Scholar 

  • Eller KT, Katz B (2014) Nitrogen source inventory and loading estimates for the Silver Springs BMAP contributing area (Final Draft). Florida Department of Environmental Protection, Tallahassee

  • FDOH (2016) Florida Water Management Inventory Project. Florida Department of Health. http://www.floridahealth.gov/environmental-health/onsite-sewage/research/flwmi/index.html. Accessed Dec 2016

  • Friedman J, Hastie T, Tibshirani R (2009) The elements of statistical learning : data mining, inference, and prediction, springer series in statistics. Springer, New York

    Google Scholar 

  • Gurdak JJ, Qi SL (2012) Vulnerability of recently recharged groundwater in principle aquifers of the united states to nitrate contamination. Environ Sci Technol 46:6004–6012. https://doi.org/10.1021/es300688b

    Article  Google Scholar 

  • Heffernan JB, Albertin AR, Fork ML, Katz BG, Cohen MJ (2012) Denitrification and inference of nitrogen sources in the karstic Floridan Aquifer. Biogeosciences 9:1671–1690

    Article  Google Scholar 

  • Hengl T (2009) A practical guide to geostatistical mapping. http://spatial-analyst.net/book/. Accessed June 2016 (self published online book ISBN: 978-90-9024981-0)

  • Katz BG (2004) Source of nitrate contamination and age of water in large karstic springs of Florida. Environ Geol 46:689–706

    Article  Google Scholar 

  • Katz BG, Sepulveda AA, Verdi RJ (2009) Estimating nitrogen loading to ground water and assessing vulnerability to nitrate contamination in a large karstic springs basin, Florida. J Am Water Resour Assoc 45:607–627

    Article  Google Scholar 

  • Kuhn M (2008) Building predictive models in R using the caret package. J Stat Softw 28:1–26

    Article  Google Scholar 

  • Kuniansky EL, Bellino JC, Dixon JF (2012) Transmissivity of the upper Floridan aquifer in Florida and parts of Georgia, South Carolina, and Alabama, U.S. Geological Survey Scientific Investigations Map 3204. https://pubs.usgs.gov/sim/3204. Accessed July 2018

  • Liaw A, Wiener M (2002) Classification and regression by randomForest. R News 2:18–22

    Google Scholar 

  • Lindsey B, Katz B, Berndt M, Ardis A, Skach K (2010) Relations between sinkhole density and anthropogenic contaminants in selected carbonate aquifers in the eastern United States. Environ Earth Sci 60:1073–1090. https://doi.org/10.1007/s12665-009-0252-9

    Article  Google Scholar 

  • MACTEC Engineering and Consulting Inc (2007) Phase I report Wekiva River basin nitrate sourcing study. Prepared for the St. Johns River Water Management District (Palatka, FL) and the Florida Department of Environmental Protection (Tallahassee, FL)

  • Munch Toth, Huang Davis, Fortich Osburn, Phlips Quinlan, Allen Woods, Cooney Knight, Clarke Knight (2007) Fifty-year retrospective study of the ecology of Silver Springs, Florida, Special Publication SJ2007-SP4. St. Johns River Water Managmeent District, Palatka

    Google Scholar 

  • National Climatic Data Center (2018) NOAA. https://www.ncdc.noaa.gov/. Accessed Aug 2018

  • Nolan BT, Hitt KJ, Ruddy BC (2002) Probability of nitrate contamination of recently recharged groundwaters in the conterminous United States. Environ Sci Technol 36:2138–2145. https://doi.org/10.1021/es0113854

    Article  Google Scholar 

  • NRCS (2016) Soil Survey Staff, Natural Resources Conservation Service, United States Department of Agriculture. Soil Survey Geographic (SSURGO) Database for Florida. https://websoilsurvey.sc.egov.usda.gov/App/HomePage.html. Accessed June 2016

  • Pacheco FAL, Van Der Weijden CH (2002) Mineral weathering rates calculated from spring water data: a case study in an area with intensive agriculture, the Morais Massif, northeast Portugal. Appl Geochem 17:583–603. https://doi.org/10.1016/S0883-2927(01)00121-4

    Article  Google Scholar 

  • Pacheco FAL, Sousa Oliveira A, Van Der Weijden AJ, Van Der Weijden CH (1999) Weathering, biomass production and groundwater chemistry in an area of dominant anthropogenic influence, the Chaves-Vila Pouca de Aguiar region, north of Portugal. Water Air Soil Pollut 115:481–512. https://doi.org/10.1023/A:1005119121666

    Article  Google Scholar 

  • Pacheco FAL, Martins LMO, Quininha M, Oliveira AS, Sanches Fernandes LF (2018) Modification to the DRASTIC framework to assess groundwater contaminant risk in rural mountainous catchments. J Hydrol 566:175–191. https://doi.org/10.1016/j.jhydrol.2018.09.013

    Article  Google Scholar 

  • Pebesma EJ (2004) Multivariable geostatistics in S: the gstat package. Comput Geosci 30:683–691

    Article  Google Scholar 

  • Pebesma EJ, Bivand RS (2005) Classes and methods for spatial data in R. R News 5:9–13

    Google Scholar 

  • Phelps GG (2004) Chemistry of ground water in the silver springs basin, Florida, with an emphasis on nitrate. Scientific Investigations Report 2004-5144. U.S. Geological Survey, Reston

  • Price CV, Nakagaki N, Hitt KJ, Clawges RM (1990) Enhanced historical land-use and land-cover data sets of the U.S.Geological Survey. Data Series 240. U.S. Geological Survey, Reston. https://water.usgs.gov/GIS/dsdl/ds240/index.html. Accessed June 2016

  • Quinlan EL, Phlips EJ, Donnelly KA, Jett CH, Sleszynski P, Keller S (2008) Primary producers and nutrient loading in Silver Springs, FL, USA. Aquat Bot 88:247–255

    Article  Google Scholar 

  • R Core Team (2017) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria

    Google Scholar 

  • Reddy KR, Dobberfuhl D, Fitzgerald CMC, Frazer T, Graham W, Jawitz J, Kaplan D, Inglett P, Martin J, Osborne T, Burger P, Canion A, Coveney M, Lowe E, Mattson R, Slater J, Sucsy P (2017) Collaborative research initiative on springs protection and sustainability (CRISPS): final report. St Johns River Water Management District, Palatka

    Google Scholar 

  • Rodriguez-Galiano V, Mendes MP, Garcia-Soldado MJ, Chica-Olmo M, Ribeiro L (2014) Predictive modeling of groundwater nitrate pollution using Random Forest and multisource variables related to intrinsic and specific vulnerability: a case study in an agricultural setting (Southern Spain). Sci Total Environ 476–477:189–206. https://doi.org/10.1016/j.scitotenv.2014.01.001

    Article  Google Scholar 

  • Sing T, Sander O, Beerenwinkel N, Lengauer T (2005) ROCR: visualizing classifier performance in R. Bioinformatics 21:7881

    Article  Google Scholar 

  • SJRWMD (2011) 2009 Land cover and land use. St. Johns River Water Management District, Palatka

    Google Scholar 

  • Stevenson RJ, Pinowska A, Albertin A, Sickman JO (2007) Ecological condition of algae and nutrients in Florida springs: the synthesis report. Prep. Florida Dep. Environ. Prot, Tallahassee

    Google Scholar 

  • Stokes J, Huang C (2013) Silver springs refinement (GIS layer). St Johns River Water Managment District, Palatka

    Google Scholar 

  • Tesoriero AJ, Voss FD (1997) Predicting the probability of elevated nitrate concentrations in the Puget Sound Basin: implications for aquifer susceptibility and vulnerability. Groundwater 35:1029–1039

    Article  Google Scholar 

  • Williams LJ, Dixon JF (2015) Digital surfaces and thicknesses of selected hydrogeologic units of the Floridan aquifer system in Florida and parts of Georgia, Alabama, and South Carolina. United States Geol. Surv. DS 926

  • Wynn S, Borisova T, Hodges A (2014) Economic value of the services provided by florida springs and other water bodies : a summary of existing studies. Univ. Florida IFAS FE959, pp 1–8

Download references

Acknowledgements

The authors would like to acknowledge Shane Williams, Mary Paulic, Jeff Davis, Brandon Dees, and Bill VanSickle for providing valuable feedback, datasets, and GIS assistance to support this work.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Andy Canion.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 272 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Canion, A., McCloud, L. & Dobberfuhl, D. Predictive modeling of elevated groundwater nitrate in a karstic spring-contributing area using random forests and regression-kriging. Environ Earth Sci 78, 271 (2019). https://doi.org/10.1007/s12665-019-8277-1

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s12665-019-8277-1

Keywords

Navigation