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Lysobacter panacihumi sp. nov., isolated from ginseng cultivated soil

  • Microbial Physiology and Biochemistry
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Abstract

A Gram-negative, non-motile, aerobic, catalase-, and oxidasepositive bacterial strain, designated DCY117T, was isolated from ginseng cultivated soil in Gochang-gun, Republic of Korea, and was characterized taxonomically using a multifaceted approach. 16S rRNA gene sequence analysis revealed that strain DCY117T showed highest similarity to Lysobacter ruishenii CTN-1T (95.3%). Phylogenetic analysis revealed that closely related relatives of strain DCY117T were L. aestuarii S2-CT (95.1%), L. daejeonensis GH1-9T (95.0%), and L. caeni BUT-8T (94.9%). Diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), and phosphatidylethanolamine (PE) were the major polar lipids of strain DCY117T. The major isoprenoid quinone was Q-8. The major cellular fatty acids of strain DCY117T were iso-C15:0, iso-C16:0, and summed feature 9 (comprising iso-C17:1ω9c and/or 10-methyl-C16:0). Genomic DNA G + C content was 61.8 mol%. On the basis of our findings, strain DCY117T is a novel species in the genus Lysobacter. We propose the name Lysobacter panacihumi sp. nov., and the type strain is DCY117T (= KCTC 62019T = JCM 32168T).

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Author notes

  1. These authors contributed equally to this work.

Authors and Affiliations

  1. Department of Oriental Medicinal Biotechnology, Kyung Hee University, Yongin, 17104, Republic of Korea

    Yue Huo, Jong-Pyo Kang, Yaxi Han & Deok-Chun Yang

  2. College of Food Science and Engineering, Jilin Agricultural University, Changchun, 130118, P. R. China

    Yue Huo & Chunhong Piao

  3. Graduate School of Biotechnology, College of Life Sciences, Kyung Hee University, Yongin, 17104, Republic of Korea

    Joon Hurh, Jong-Chan Ahn, Ramya Mathiyalagan & Deok-Chun Yang

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  1. Yue Huo
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  2. Jong-Pyo Kang
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  3. Joon Hurh
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Correspondence to Deok-Chun Yang.

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Huo, Y., Kang, JP., Hurh, J. et al. Lysobacter panacihumi sp. nov., isolated from ginseng cultivated soil. J Microbiol. 56, 748–752 (2018). https://doi.org/10.1007/s12275-018-8202-4

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