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Analyse chromosomal integrierter HBV-DNA durch inverse nested PCR

  • Wissenschaft · Special: PCR & qPCR
  • DNA-Integration
  • Published:
BIOspektrum Aims and scope

Abstract

Chronic infection with human hepatitis B virus (HBV) causes about 887.000 deaths annually and is a major risk factor for liver cancer through as-yet unclear mechanisms. HBV DNA integrates into the host cell genome early during infection. HBV integration is not required for viral replication but contributes to subviral particle formation. It is also associated with HBV-induced liver cancer, so its detection, quantification, and characterization are key to understanding HBV-associated disease.

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Literatur

  1. Tu T, Budzinska MA, Shackel NA et al. (2017) HBV DNA integration: molecular mechanisms and clinical implications. Viruses 9:75

    Article  CAS  PubMed Central  Google Scholar 

  2. Tu T, Budzinska MA, Shackel NA et al. (2015) Conceptual models for the initiation of hepatitis B virus-associated hepa-tocellular carcinoma. Liver Int 35:1786–1800

    Article  CAS  PubMed  Google Scholar 

  3. Levrero M, Zucman-Rossi J (2016) Mechanisms of HBV-induced hepatocellular carcinoma. J Hepatol 64:S84–S101

    Article  CAS  PubMed  Google Scholar 

  4. Yan H, Zhong G, Xu G et al. (2012) Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus. Elife 3, doi: https://doi.org/10.7554/eLife.00049

  5. Ni Y, Lempp FA, Mehrle S et al. (2014) Hepatitis B and D viruses exploit sodium taurocholate co-transporting polypeptide for species-specific entry into hepatocytes. Gastroenterology 146:1070–1083

    Article  CAS  PubMed  Google Scholar 

  6. Tu T, Budzinska MA, Vondran FWR et al. (2018) Hepatitis B virus DNA integration occurs early in the viral life cycle in an in vitro infection model via NTCP-dependent uptake of enveloped virus particles. J Virol 92, doi: https://doi.org/10.1128/JVI.02007-17

  7. Budzinska MA, Shackel NA, Urban S et al. (2018) Sequence analysis of integrated hepatitis B virus DNA during HBeAg-seroconversion. Emerg Microbes Infect 7:142

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Tu T, Mason WS, Clouston AD et al. (2015) Clonal expansion of hepatocytes with a selective advantage occurs during all stages of chronic hepatitis B virus infection. J Viral Hepat 22:737–753

    Article  CAS  PubMed  Google Scholar 

  9. Mason WS, Gill US, Litwin S et al. (2016) HBV DNA integration and clonal hepatocyte expansion in chronic hepatitis B patients considered immune tolerant. Gastroenterology 151:986–998

    Article  CAS  PubMed  Google Scholar 

  10. Hsu T, Möröy T, Etiemble J et al. (1988) Activation of c-myc by woodchuck hepatitis virus insertion in hepatocellular carcinoma. Cell 55:627–635

    Article  CAS  PubMed  Google Scholar 

  11. Hansen LJ, Tennant BC, Seeger C et al. (1993) Differential activation of myc gene family members in hepatic carcinogenesis by closely related hepatitis B viruses. Mol Cell Biol 13:659–667

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Budzinska MA, Shackel NA, Urban T et al. (2018) Cellular genomic sites of hepatitis B virus DNA integration. Genes (Basel) 9:356

    Article  CAS  Google Scholar 

  13. Ohshima K, Mukai Y, Shiraki H et al. (1997) Clonal integration and expression of human T-cell lymphotropic virus type I in carriers detected by polymerase chain reaction and inverse PCR. Am J Hematol 54:306–312

    Article  CAS  PubMed  Google Scholar 

  14. Tu T, Jilbert AR (2017) Detection of hepatocyte clones containing integrated hepatitis B virus DNA using inverse nested PCR. Methods Mol Biol 1540:97–118

    Article  CAS  PubMed  Google Scholar 

  15. Tu T, Urban S (2018) Detection of low copy number integrated viral DNA formed by in vitro hepatitis B infection. J Vis Exp, doi: https://doi.org/10.3791/58202

    Google Scholar 

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Correspondence to Stephan Urban.

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Thomas Tu 2004–2008 Studium der Biomedizinischen Wissenschaften an der Universität Adelaide, Australien; dort 2008–2013 Promotion in Biomedizin bei Prof. Dr. A. Jilbert. 2012–2015 Postdoktorand an der Universität Sydney, Australien, bei Prof. Dr. N. Shackel. Seit 2015 Postdoktorand an der Universität Heidelberg bei Prof. Dr. S. Urban.

Shirin Nkongolo 2008–2015 Medizinstudium an den Universitäten Heidelberg und Montpellier, Frankreich. 2012–2015 Promotion in Medizin an der Universität Heidelberg bei Prof. Dr. S. Urban. Seit 2016 Ärztin an der Universitätsklinik Heidelberg und Postdoktorandin an der Universität Heidelberg bei Prof. Dr. S. Urban.

Stephan Urban 1982–1992 Chemie- und Biochemiestudium an der Universität Tübingen. 1992–1995 Promotion am Max-Planck-Institut für Biochemie in Martinsried bei Prof. Dr. Dr. P. H. Hofschneider. 1995–2000 Postdoktorand am ZMBH der Universität Heidelberg bei Prof. Dr. H. Schaller. 2000 Habilitation in Molekularbiologie an der Universität Heidelberg; dort 2001–2008 Arbeitsgruppenleiter Molekulare Virologie, 2008–2014 apl. Professor an der Biologischen Fakultät und seit 2014 W3-Professor für Translationale Virologie.

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Tu, T., Nkongolo, S. & Urban, S. Analyse chromosomal integrierter HBV-DNA durch inverse nested PCR. Biospektrum 25, 282–284 (2019). https://doi.org/10.1007/s12268-019-1047-5

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  • DOI: https://doi.org/10.1007/s12268-019-1047-5

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