Skip to main content
Log in

Population structure and genetic diversity in yellow catfish (Pelteobagrus fulvidraco) assessed with microsatellites

  • Research Note
  • Published:
Journal of Genetics Aims and scope Submit manuscript

Abstract

Yellow catfish (Pelteobagrus fulvidraco) is an important aquaculture species which is widely distributed, especially in the Yangtze River of China. To facilitate its conservation and stock improvement, 273 yellow catfish samples from the Yangtze River (seven populations) and Baiyangdian (BYD) Lake were genotyped using eight microsatellites in combination with capillary electrophoresis. A total of 250 alleles were detected at eight loci in eight populations showing high allelic (\(N_{\mathrm{a}} = 31.25 \pm 7.38\)) and genetic diversity (\(H_{\mathrm{e}} = 0.888\)–0.944). Both \(F_{{\mathrm{ST}}}\) and clustering analyses revealed the presence of subtle population differences between the species of Yangtze River and the BYD lake. Mantel tests suggest that genetic distance is significantly correlated with geographical distance (\(R = 0.9294\) and \(P< 0.05\)). The results of genetic diversity and population structure will help in conservation and improvement of yellow catfish.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

References

  • Bohonak A. J. 2002 ibd (isolation by distance): a program for analyses of isolation by distance. J. Hered. 93, 153–154.

    Article  CAS  PubMed  Google Scholar 

  • Bossart J. L. and Prowell D. P. 1998 Genetic estimates of population structure and gene flow: limitations, lessons and new directions. Trends Ecol. Evol. 13, 202–206.

    Article  CAS  PubMed  Google Scholar 

  • Botstein D., White R. L., Skolnick M. and Davis R. W. 1980 Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am. J. Hum. Genet. 32, 314–331.

    CAS  PubMed  PubMed Central  Google Scholar 

  • China Fisheries Statistical Yearbook 2017 Ministry of agriculture and fisheries bureau of China. China Agriculture Press, Beijing.

  • Diwan N. and Cregan P. B. 1997 Automated sizing of fluorescent-labeled simple sequence repeat (SSR) markers to assay genetic variation in soybean. Theor. Appl. Genet. 95, 723–733.

    Article  CAS  Google Scholar 

  • Earl D. A. 2012 STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 4, 359–361.

    Article  Google Scholar 

  • Evanno G., Regnaut S. and Goudet J. 2005 Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14, 2611–2620.

    Article  CAS  PubMed  Google Scholar 

  • Excoffier L., Laval G. and Schneider S. 2005 Arlequin (version 3.0), an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1, 47–50.

    Article  CAS  Google Scholar 

  • Hu G. F., Liang H. W., Li Z., Wang C. Z., Wu Q, C., Liu X. J. et al. 2009 Isolation and characterization of polymorphic microsatellite markers in the yellow catfish. Pelteobagrus fulvidraco. Conserv. Genet. Resour. 1, 63.

    Article  Google Scholar 

  • Launey S., Ledu C., Boudry P., Bonhomme F. and Naciri-Graven Y. 2002 Geographic structure in the European flat oyster (Ostrea edulis L.) as revealed by microsatellite polymorphism. J. Hered. 93, 331–351.

    Article  CAS  PubMed  Google Scholar 

  • Liu H. Y., Chen X. H. and Fei X. 2016 Population genetic structure of Pelteobagrus fulvidraco in the lakes of the middle and lower reaches of the Yangtze River and in Fuxian Lake of Yunnan. J. Cent. China Normal Univ. 50, 269–275.

    CAS  Google Scholar 

  • Pritchard J. K., Stephens M. and Donnelly P. 2000 Inference of population structure using multilocus genotype data. Genetics 155, 945–959.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Song P., Pan Y. F., Zhu X., Hu J. R., Hu Y. C. and Cai C. L. 2001 RAPD markers and genetic diversity in Pelteobagrus Fulvidraco. Wuhan Univ. J. Nat. Sci. 47, 233–237.

    CAS  Google Scholar 

  • Taggart J. B., Hynes R. A., Prodöuhl P. A. and Ferguson A. 1992 A simplified protocol for routine total DNA isolation from salmonid fishes. J. Fish Biol. 40, 963–965.

    Article  CAS  Google Scholar 

  • Tan Z. J., Zhang T. Q., Lu C. Y., Li C. and Sun X. W. 2011 Development and characteristics of tri- and tetra-nucleotide microsatellites for silver carp (Hypophthalmichthys molitrix). J. Shanghai Ocean Univ. 20, 328–335.

    CAS  Google Scholar 

  • Vemireddy L. R., Archak S. and Nagaraju J. 2007 Capillary electrophoresis is essential for microsatellite marker based detection and quantification of adulteration of Basmati rice (Oryza sativa). J. Agric. Food Chem. 55, 8112–8117.

    Article  CAS  PubMed  Google Scholar 

  • Williams S. L. and Orth R. J. 1998 Genetic diversity and structure of natural and transplanted eelgrass populations in the Chesapeake and Chincoteague Bays. Estuaries 21, 118–128.

    Article  Google Scholar 

  • Yeh F. C., Yang R. C. and Boyle T. 1999 POPGENE version 1.32, Microsoft window-base software for population genetic analysis, a quick user’s guide. University of Alberta, Center for International Forestry Research, Alberta, Canada.

  • Zhang J., Ma W. G., Wang W. M., Gui J. F. and Mei J. 2016 Parentage determination of yellow catfish (Pelteobagrus fulvidraco) based on microsatellite DNA markers. Aquacult. Int. 24, 567–576.

    Article  CAS  Google Scholar 

  • Zhou W., Wang J., Jin B. S., Gao T. X. and Song N. 2016 . J. Fish China 40, 1531–1541.

    Google Scholar 

Download references

Acknowledgement

This work was supported by China Agriculture Research System (CARS-46) and National Natural Science Foundation of China (31502158).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jie Mei.

Additional information

Corresponding editor: H. A. Ranganath.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (docx 24 KB)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Guo, W., Guo, C., Wang, Y. et al. Population structure and genetic diversity in yellow catfish (Pelteobagrus fulvidraco) assessed with microsatellites. J Genet 98, 26 (2019). https://doi.org/10.1007/s12041-019-1070-9

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s12041-019-1070-9

Keywords

Navigation