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Genomic Organization of Streptomyces flavotricini NGL1 and Streptomyces erythrochromogenes HMS4 Reveals Differential Plant Beneficial Attributes and Laccase Production Capabilities

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Abstract

The genus Streptomyces has been explored in industrial sectors due to its endurance to environmental stresses, the production of a plethora of biomolecules, the biological remediation of soils, and alleviating plant stresses. The whole genome of NGL1 and HMS4 was sequenced due to the specific laccase activity against 2,6-dimethoxyphenol (2,6-DMP) and differential plant beneficial attributes. The deduced genome of 8.85 Mbp and 7.73 Mbp in size with a G+C content of 72.03% and 72.3% was obtained for NGL1 and HMS4, respectively. A total of 8438 and 7322 protein coding genes, 155 (130 tRNA, 25 rRNA) and 145 tRNA (121 tRNA, 24 rRNA) coding genes were predicted in NGL1 and HMS4, respectively. The comparative genomics of NGL1 and HMS4 showed 185 and 162 genes encoding for carbohydrate-active enzymes, respectively. The genomic ability of these strains to encode carbohydrate-active enzymes, laccase, and diversity of BGCs, along with plant beneficial attributes to suppress the plant pathogens can be used for several industrial and agricultural applications.

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Data Availability

The nucleotide sequences for 16S rRNA gene are submitted in NCBI GenBank with accession numbers MZ928430 for NGL1 and MZ928431 for HMS4. The whole-Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession no. JAINUL000000000 and JAINUE000000000 for Streptomyces flavotricini NGL1 (https://www.ncbi.nlm.nih.gov/nuccore/JAINUE000000000) and Streptomyces erythrochromogenes HMS4 (https://www.ncbi.nlm.nih.gov/nuccore/JAINUE000000000), respectively. The submission ID: SUB10271849, BioProject ID: PRJNA758194 for NGL1 and BioProject ID: PRJNA758184, BioSample accession: SAMN21014842, Submission ID: SUB10271813 for HMS4.

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Funding

This study was funded by Science for Equity, Empowerment and Development Division (SEED), Department of Science and Technology, New Delhi, GOI under the grants no. SP/YO/125/2017 and SEED-TIASN-023-2018.

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  1. College of Horticulture and Forestry, Dr YS Parmar University of Horticulture & Forestry, Neri, Hamirpur, HP, 177 001, India

    Richa Salwan

  2. University Centre for Research and Development, Chandigarh University, Gharuan, Mohali, PB, 140 413, India

    Randhir Kaur & Vivek Sharma

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  1. Richa Salwan
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Salwan, R., Kaur, R. & Sharma, V. Genomic Organization of Streptomyces flavotricini NGL1 and Streptomyces erythrochromogenes HMS4 Reveals Differential Plant Beneficial Attributes and Laccase Production Capabilities. Mol Biotechnol 64, 447–462 (2022). https://doi.org/10.1007/s12033-021-00424-6

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