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Automatic anatomical labeling of arteries and veins using conditional random fields

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International Journal of Computer Assisted Radiology and Surgery Aims and scope Submit manuscript

Abstract

Purpose

For safe and reliable laparoscopic surgery, it is important to determine individual differences of blood vessels such as the position, shape, and branching structures. Consequently, a computer-assisted laparoscopy that displays blood vessel structures with anatomical labels would be extremely beneficial. This paper details an automated anatomical labeling method for abdominal arteries and veins extracted from 3D CT volumes.

Methods

The proposed method represents a blood vessel tree as a probabilistic graphical model by conditional random fields (CRFs). An adaptive gradient algorithm is adopted for structure learning. The anatomical labeling of blood vessel branches is performed by maximum a posteriori estimation.

Results

We applied the proposed method to 50 cases of arterial and portal phase abdominal X-ray CT volumes. The experimental results showed that the F-measure of the proposed method for abdominal arteries and veins was 94.4 and 86.9%, respectively.

Conclusion

We developed an automated anatomical labeling method to annotate each blood vessel branches of abdominal arteries and veins using CRF. The proposed method outperformed a state-of-the-art method.

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References

  1. Shinoda T, Kitasaka T, Mori K, Suenaga Y, Misawa K, Fujiwara M (2008) A study on automated anatomical labeling of abdominal arteries extracted from 3D abdominal CT images, vol 107. Technical Report of IEICE, PRMU, pp 45–150

  2. Suzuki Y, Okada T, Hori M, Yokota F, Linguraru M, Tomiyama N, Sato Y (2012) Automated anatomical labeling of abdominal arteries from CT data based on optimal path finding between segmented organ and aorta regions: a robust against topological variability. Int J CARS 7:S47–S48

    Google Scholar 

  3. Mori K, Oda M, Egusa T, Jiang Z, Kitasaka T, Fujiwara M, Misawa K (2010) Automated nomenclature of upper abdominal arteries for displaying anatomical names on virtual laparoscopic images. In: Medical imaging and virtual reality LNCS 6326, pp 353–362

  4. Hoang BH, Oda M, Jiang Z, Kitasaka T, Misawa K, Fujiwara M, Mori K (2011) A study on automated anatomical labeling to arteries concerning with colon from 3D abdominal CT images, vol 7962. In: Proceedings of the SPIE, pp 79623R-1–79623R-9

  5. Bilgel M, Roy S, Carass A, Nyquist PA, Prince JL (2013) Automated anatomical labeling of the cerebral arteries using belief propagation. In: Proceedings of the SPIE medical, imaging, pp 866918–866918

  6. Robben D, Sunaert S, Thijs V, Wilms G, Maes F, Suetens P (2013) Anatomical labeling of the Circle of Willis using maximum a posteriori graph matching. In: MICCAI2013. Part I, LNCS 8149, pp 566–573

  7. Ghanavati S, Lerch JP, Sled JG (2014) Automatic anatomical labeling of the complete cerebral vasculature in mouse models. NeuroImage 95:117–128

    Article  PubMed  Google Scholar 

  8. Bogunovic H, Pozo JM, Cardenes R, Roman LS, Frangi AF (2014) Anatomical labeling of the Circle of Willis using maximum a posteriori probability estimation. IEEE Trans Med Imaging 32:1587–1599

    Article  Google Scholar 

  9. Matsuzaki T, Oda M, Kitasaka T, Hayashi Y, Misawa K, Mori K (2015) Automated anatomical labeling of abdominal arteries and hepatic portal system extracted from abdominal CT volumes. Med Image Anal 20:152–161

    Article  PubMed  Google Scholar 

  10. Sutton C, McCallum A (2006) An introduction to conditional random fields for relational learning. Intro. to statistical relational learning. The MIT Press, Cambridge

    Google Scholar 

  11. Duchi J, Hazan E, Singer Y (2011) Adaptive subgradient methods for online learning and stochastic optimization. J Mach Learn Res 12:2121–2159

    Google Scholar 

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Acknowledgements

The authors thank colleagues for suggestions and advice.

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Authors and Affiliations

Authors

Corresponding author

Correspondence to Takayuki Kitasaka.

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Funding

This work was supported in part by a Grant-In-Aid for Scientific Research from the Ministry of Education, Culture, Sports, Science and Technology of Japan (26560255, 26108006, 25242047, 15K01344), the Japan Society for the Promotion of Science, and the Practical Research for Innovative Cancer Control from Japan Agency for Medical Research and Development (AMED).

Conflict of interest

The authors declare that they have no conflict of interest.

Ethical approval

The study was approved by the institutional review board of the Aichi Cancer Center.

Informed consent

Informed consent was obtained from all individual participants included in the study.

Appendix

Appendix

See Table 4.

Table 4 Abbreviations of target blood vessels of anatomical labeling

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Kitasaka, T., Kagajo, M., Nimura, Y. et al. Automatic anatomical labeling of arteries and veins using conditional random fields. Int J CARS 12, 1041–1048 (2017). https://doi.org/10.1007/s11548-017-1549-x

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  • DOI: https://doi.org/10.1007/s11548-017-1549-x

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